Topic 25 -- Abstracts with Biological Entities (English) - 75 Topics

cite ad title authors publish year publish time dataset abstract mentions covid pmcid pubmed id doi cord uid topic weight Similarity scispacy Similarity specter
1 Bashir_2020 An efficient pattern growth approach for mining fault tolerant frequent itemsets Bashir, Shariq 2020 2020-04-01 PMC N PMC7126664 10.1016/j.eswa.2019.113046 qndr28n6 0.919214 Lee_C_2017, Xu_Z_2009, Saw_A_2019, Saw_A_2019 Hu_Y_2006, Lee_G_2009, Wu_Y_2020, McCrae_2008
2 Dai_Q_2012 Sequence comparison via polar coordinates representation and curve tree Dai, Qi; Guo, Xiaodong; Li, Lihua 2012 2012-01-07 PMC N PMC7094155 22001081.0 10.1016/j.jtbi.2011.09.030 2lg8i9r1 0.917643 Chang_2011, Saw_A_2019, Qi_Z_2018, Liao_2006 Song_2005, Li_C_2018, Wu_C_2018, Deng_2014
3 Feng_2010 New method for comparing DNA primary sequences based on a discrimination measure Feng, Jie; Hu, Yong; Wan, Ping; Zhang, Aibing; Zhao, Weizhong 2010 2010-10-21 PMC N PMC7094107 20688082.0 10.1016/j.jtbi.2010.07.040 jvfjf7aw 0.849763 Chang_2011, Qi_Z_2018, Saw_A_2019, Dai_Q_2012 Chang_2011, Saw_A_2019, Otsuka_1999, Zhang_2017
4 Zhao_2012 Using Support Vector Machine and Evolutionary Profiles to Predict Antifreeze Protein Sequences Zhao, Xiaowei; Ma, Zhiqiang; Yin, Minghao 2012 2012-02-17 COMM-USE N PMC3292016 22408447.0 10.3390/ijms13022196 7vfo98ho 0.842544 Saw_A_2019, Qi_Z_2018, Lee_C_2017, Dai_Q_2012, Chang_2011 Cai_C_2006, Xue_G_2013, Xu_Y_2015
5 Mendizabal-Ruiz_2018 Genomic signal processing for DNA sequence clustering Mendizabal-Ruiz, Gerardo; Román-Godínez, Israel; Torres-Ramos, Sulema; Salido-Ruiz, Ricardo A.; Vélez-Pérez, Hugo; Morales, J. Alejandro 2018 2018-01-24 None N PMC5786891 29379686.0 10.7717/peerj.4264 qy4kirx1 0.841180 Bocharov_2018, Chang_2011, Qi_Z_2018, Liou_2013 Zhao_2011, Hoang_2015, Wei_D_2012, Mu_Z_2019
6 Dai_Q_2013 Study of LZ-word distribution and its application for sequence comparison Dai, Qi; Yan, Zhaofang; Shi, Zhuoxing; Liu, Xiaoqing; Yao, Yuhua; He, Pingan 2013 2013-11-07 PMC N PMC7094135 23876763.0 10.1016/j.jtbi.2013.07.008 y7697hx8 0.834801 Saw_A_2019, Chang_2011, Qi_Z_2018, Liu_L_2012, Lee_C_2017 Liu_L_2012, Wang_2008, Nandy_2009, Zhang_2013
7 Wu_Y_2020 NetNCSP: Nonoverlapping closed sequential pattern mining Wu, Youxi; Zhu, Changrui; Li, Yan; Guo, Lei; Wu, Xindong 2020 2020-03-31 PMC Y 10.1016/j.knosys.2020.105812 pdf3i2tt 0.826997 Polverino_2017, Chang_2011, Qi_Z_2018, Dai_Q_2012, Lee_C_2017 Bashir_2020, Lee_G_2009, Hu_Y_2006, McCrae_2008
8 Wąż_P_2013 Descriptors of 2D-dynamic graphs as a classification tool of DNA sequences Wąż, Piotr; Bielińska-Wąż, Dorota; Nandy, Ashesh 2013 2013-09-03 PMC N PMC7088265 10.1007/s10910-013-0249-1 x4z2iz7b 0.826101 Liao_2006, Dai_Q_2012, Chang_2011, Qi_Z_2018 Yu_J_2009, Zou_S_2014, Deng_2014, Qi_Z_2018
9 Lu_C_2005 A memory-efficient algorithm for multiple sequence alignment with constraints Lu, Chin Lung; Huang, Yen Pin 2005 2005-01-01 PMC N PMC7109922 15374876.0 10.1093/bioinformatics/bth468 e9app2cv 0.804339 Lee_C_2017, Chang_2011, Saw_A_2019, Dai_Q_2012, Qi_Z_2018 Song_2005, Chung_2007, Pessia_2015, Kai_Z_2019
10 Peng_2018 Algorithms for interval-valued fuzzy soft sets in emergency decision making based on WDBA and CODAS with new information measure Peng, Xindong; Garg, Harish 2018 2018-05-31 PMC N PMC7116931 10.1016/j.cie.2018.04.001 lrcxwtx7 0.800745 Bocharov_2018, Qi_Z_2018, Liou_2013, Polverino_2017, Chowell_2017 Liu_Y_2014, Zhong_2010, Al-qaness_2020, Arji_2019
11 Feng_2019 Relative space-based GIS data model to analyze the group dynamics of moving objects Feng, Mingxiang; Shaw, Shih-Lung; Fang, Zhixiang; Cheng, Hao 2019 2019-07-31 PMC N PMC7111340 10.1016/j.isprsjprs.2019.05.002 eydkfqi2 0.799425 Bocharov_2018, Polverino_2017, Chowell_2017, Dai_Q_2012 Liu_K_2007, Davis_2007, Li_M_2015, Zou_Z_2013
12 Shikder_2019 An OpenMP-based tool for finding longest common subsequence in bioinformatics Shikder, Rayhan; Thulasiraman, Parimala; Irani, Pourang; Hu, Pingzhao 2019 2019-04-11 COMM-USE N PMC6458724 30971295.0 10.1186/s13104-019-4256-6 vhvwxvwq 0.794093 Saw_A_2019, Lee_C_2017, Qi_Z_2018, Chang_2011, Saw_A_2019 Lu_C_2005, Reeder_2007, Dong_2019
13 Liu_C_2005 Profiling and Searching for RNA Pseudoknot Structures in Genomes Liu, Chunmei; Song, Yinglei; Malmberg, Russell L.; Cai, Liming 2005 2005-01-01 PMC N PMC7122704 10.1007/11428848_123 egbkl2v2 0.783355 Liu_C_2005, Chang_2011, Dai_Q_2012, Saw_A_2019 Liu_C_2005, Dost_2006, Kim_J_2007
14 Hou_W_2017 A new method to analyze protein sequence similarity using Dynamic Time Warping Hou, Wenbing; Pan, Qiuhui; Peng, Qianying; He, Mingfeng 2017 2017-03-31 PMC N PMC7125777 27974244.0 10.1016/j.ygeno.2016.12.002 oim1ifw0 0.777375 Chang_2011, Qi_Z_2018, Saw_A_2019, Dai_Q_2012 Wu_C_2018, Abo-Elkhier_2019, Li_C_2018, Hoang_2015
15 Lee_G_2009 Proportional fault-tolerant data mining with applications to bioinformatics Lee, Guanling; Peng, Sheng-Lung; Lin, Yuh-Tzu 2009 2009-02-19 PMC N PMC7087812 10.1007/s10796-009-9158-z kt9sbn40 0.775531 Lee_C_2017, Liou_2013, Saw_A_2019, Qi_Z_2018, Chang_2011 Bashir_2020, Wilson_2003, Hu_Y_2006, Wu_Y_2020
16 Mousavi_2012 An enhanced beam search algorithm for the Shortest Common Supersequence Problem Mousavi, Sayyed Rasoul; Bahri, Fateme; Tabataba, Farzaneh Sadat 2012 2012-04-30 PMC N PMC7127599 10.1016/j.engappai.2011.08.006 1ul9zqhb 0.773213 Lee_C_2017, Liou_2013, Saw_A_2019, Qi_Z_2018 Amiri_2018, Kai_Z_2019, Kai_Z_2018, Masoudi-Sobhanzadeh_2016
17 Liu_K_2007 Extended model of topological relations between spatial objects in geographic information systems Liu, Kimfung; Shi, Wenzhong 2007 2007-08-31 PMC N PMC7147859 10.1016/j.jag.2006.09.004 pd9a1em0 0.771077 Liao_2006, Qi_Z_2018, Chang_2011, Saw_A_2019 Feng_2019, Zou_Z_2013, Grubesic_2009, Dai_L_2018
18 Basu_2010 AMS 3.0: prediction of post-translational modifications Basu, Subhadip; Plewczynski, Dariusz 2010 2010-04-28 COMM-USE N PMC2874555 20423529.0 10.1186/1471-2105-11-210 f7vhyau9 0.763188 Saw_A_2019, Dai_Q_2012, Qi_Z_2018, Lee_C_2017, Chang_2011 Choo_2009, Fung_2018
19 Jiang_2009 Reasoning with rough description logics: An approximate concepts approach Jiang, Yuncheng; Wang, Ju; Tang, Suqin; Xiao, Bao 2009 2009-02-15 PMC N PMC7094356 10.1016/j.ins.2008.10.021 6dcghdxf 0.761797 Bocharov_2018, Jiang_2009, Li_J_2015, Liou_2013 Jiang_2009, Capotorti_2006, Li_J_2015
20 Zuo_G_2011 Jackknife and Bootstrap Tests of the Composition Vector Trees Zuo, Guanghong; Xu, Zhao; Yu, Hongjie; Hao, Bailin 2011 2011-03-05 NONCOMM N PMC5054193 21382595.0 10.1016/s1672-0229(10)60028-9 vm5zjr64 0.751583 Saw_A_2019, Chang_2011, Liou_2013, Kinene_2016 Banks_2006, Zhang_2017, Redelings_2007
21 Du_X_2019 Language model-based automatic prefix abbreviation expansion method for biomedical big data analysis Du, Xiaokun; Zhu, Rongbo; Li, Yanhong; Anjum, Ashiq 2019 2019-09-30 PMC N PMC7103364 10.1016/j.future.2019.01.016 ak33vta6 0.750663 Polverino_2017, Zheng_2020, Lipsitch_2014, Lee_C_2017, Bocharov_2018 Joshi_2020, McCrae_2008, Yu_A_2011, Li_Y_2020
22 Lu_Q_2006 KDE Bioscience: Platform for bioinformatics analysis workflows Lu, Qiang; Hao, Pei; Curcin, Vasa; He, Weizhong; Li, Yuan-Yuan; Luo, Qing-Ming; Guo, Yi-Ke; Li, Yi-Xue 2006 2006-08-31 PMC N PMC7106075 16260186.0 10.1016/j.jbi.2005.09.001 ihh521ur 0.750643 Montgomery_2004, Curcin_2005, Xu_Z_2009, Cheng_2013 Greenbaum_2009, Aziz_2012, Snyder_2006
23 Krantz_2020 True epidemic growth construction through harmonic analysis Krantz, Steven G.; Polyakov, Peter; Rao, Arni S.R. Srinivasa 2020 2020-06-07 PMC N PMC7118632 32173304.0 10.1016/j.jtbi.2020.110243 odupmsen 0.745690 Bocharov_2018, Mendizabal-Ruiz_2018, Liou_2013, Qi_Z_2018 Groendyke_2012, Wang_2014, Kenah_2007
24 Cho_Y_2005 Cleavage Site Analysis Using Rule Extraction from Neural Networks Cho, Yeun-Jin; Kim, Hyeoncheol 2005 2005-01-01 PMC N PMC7114972 10.1007/11539087_132 gc9hevy5 0.744576 Bocharov_2018, Cho_Y_2005, Qi_Z_2018, Liou_2013 Cho_Y_2005, Teng_2002, Kiemer_2004
25 Liu_L_2012 A relative Lempel–Ziv complexity: Application to comparing biological sequences Liu, Liwei; Li, Dongbo; Bai, Fenglan 2012 2012-03-19 PMC N PMC7094452 10.1016/j.cplett.2012.01.061 lz0gy9el 0.743254 Chang_2011, Saw_A_2019, Qi_Z_2018, Lee_C_2017 Zhang_2017
26 Jabbari_2014 A fast and robust iterative algorithm for prediction of RNA pseudoknotted secondary structures Jabbari, Hosna; Condon, Anne 2014 2014-05-18 COMM-USE N PMC4064103 24884954.0 10.1186/1471-2105-15-147 u14tj0so 0.740782 Saw_A_2019, Lee_C_2017, Qi_Z_2018, Chang_2011, Dai_Q_2012 Sperschneider_2012, Kai_Z_2019
27 Zhao_2013 SSW Library: An SIMD Smith-Waterman C/C++ Library for Use in Genomic Applications Zhao, Mengyao; Lee, Wan-Ping; Garrison, Erik P.; Marth, Gabor T. 2013 2013-12-04 COMM-USE N PMC3852983 24324759.0 10.1371/journal.pone.0082138 6f1vqkqm 0.739414 Lee_C_2017, Montgomery_2004, Cheng_2013, Lu_Q_2006 Lu_C_2005, Shepard_2016, Reeder_2007, Phillippy_2009
28 Rizzi_2010 Hierarchical Clustering Using the Arithmetic-Harmonic Cut: Complexity and Experiments Rizzi, Romeo; Mahata, Pritha; Mathieson, Luke; Moscato, Pablo 2010 2010-12-02 COMM-USE N PMC2997101 21151943.0 10.1371/journal.pone.0014067 jn3aqdck 0.730809 Bocharov_2018, Liou_2013, Qi_Z_2018, Lee_C_2017, Chang_2011 Wei_D_2012, Lu_C_2005, Zhao_2011, Xiao_2005
29 Zou_Z_2013 Semantic overlay network for large-scale spatial information indexing Zou, Zhiqiang; Wang, Yue; Cao, Kai; Qu, Tianshan; Wang, Zhongmin 2013 2013-08-31 PMC N PMC7125740 10.1016/j.cageo.2013.04.019 y0s4cf6g 0.725043 Liou_2013, Bocharov_2018, Lu_Q_2006, Polverino_2017 Feng_2019, Liu_K_2007, Pfeiffer_2015, Cai_Y_2019
30 Wang_2018 Prediction of RNA-protein interactions using conjoint triad feature and chaos game representation Wang, Hongchu; Wu, Pengfei 2018 2018-08-17 COMM-USE N PMC6984769 30117758.0 10.1080/21655979.2018.1470721 ldze0a22 0.724231 Lee_C_2017, Qi_Z_2018, Chang_2011, Saw_A_2019, Dai_Q_2012 Muppirala_2011, Suresh_2015, Shen_2018, Xiao_2017
31 Dai_Q_2009 Using Gaussian model to improve biological sequence comparison Dai, Qi; Liu, Xiaoqing; Li, Lihua; Yao, Yuhua; Han, Bin; Zhu, Lei 2009 2009-05-28 PMC N PMC7166749 19479732.0 10.1002/jcc.21322 yjon4plr 0.723115 Chang_2011, Saw_A_2019, Qi_Z_2018, Lee_C_2017, Dai_Q_2012
32 Wang_2014 ADLD: A Novel Graphical Representation of Protein Sequences and Its Application Wang, Lei; Peng, Hui; Zheng, Jinhua 2014 2014-10-30 COMM-USE N PMC4230005 25530796.0 10.1155/2014/959753 dc45h6v3 0.720002 Chang_2011, Qi_Z_2018, Saw_A_2019, Liu_L_2012, Dai_Q_2012 Deng_2014, Wu_C_2018, Li_C_2018, Qi_Z_2018
33 Hu_Y_2006 Mining association rules with multiple minimum supports: a new mining algorithm and a support tuning mechanism Hu, Ya-Han; Chen, Yen-Liang 2006 2006-10-31 PMC N PMC7127670 10.1016/j.dss.2004.09.007 s96d3ust 0.719224 Polverino_2017, Lee_C_2017, Zheng_2020, Bocharov_2018, Liou_2013 Bashir_2020, Lee_G_2009, Wu_Y_2020, McCrae_2008
34 Liu_C_2005 Profiling and Searching for RNA Pseudoknot Structures in Genomes Liu, Chunmei; Song, Yinglei; Malmberg, Russell L.; Cai, Liming 2005 2005-01-01 PMC N PMC7120494 10.1007/11567752_2 jms7hrmp 0.705169 Chang_2011, Liu_C_2005, Dai_Q_2012, Saw_A_2019 Liu_C_2005, Dost_2006, Kim_J_2007
35 Tao_J_2005 Probabilistic Reasoning for Closed-Room People Monitoring Tao, Ji; Tan, Yap-Peng 2005 2005-01-01 PMC N PMC7123562 10.1007/3-540-32367-8_15 ym9j0ei0 0.702671 Polverino_2017, Qi_Z_2018, Chang_2011, Bocharov_2018, Dai_Q_2012 Tao_J_2004, Budzan_2013, Guo_S_2020, Thi_T_2014
36 Jonić_2016 Versatility of Approximating Single-Particle Electron Microscopy Density Maps Using Pseudoatoms and Approximation-Accuracy Control Jonić, Slavica; Sorzano, Carlos Oscar S. 2016 2016-12-21 COMM-USE N PMC5209604 28097146.0 10.1155/2016/7060348 wvw6q7px 0.699812 Bifolchi_2013, Qi_Z_2018, Liao_2006, Saw_A_2019, Dai_Q_2012 Jonić_2016, Quintana_1998, Punjani_2019, Zhong_2020
37 Reeder_2007 pknotsRG: RNA pseudoknot folding including near-optimal structures and sliding windows Reeder, Jens; Steffen, Peter; Giegerich, Robert 2007 2007-05-03 NONCOMM N PMC1933184 17478505.0 10.1093/nar/gkm258 zgv4kd6j 0.697764 Lu_Q_2006, Montgomery_2004, UNKNOWN_2018, Wang_2006, Lee_C_2017 Sperschneider_2012
38 HESS_2007 An empirical test of the midpoint rooting method HESS, PABLO N.; DE MORAES RUSSO, CLAUDIA A. 2007 2007-12-07 PMC N PMC7110036 10.1111/j.1095-8312.2007.00864.x 2ai20pd1 0.697737 Kinene_2016, Chang_2011, Zheng_2008, Lee_C_2017 Banks_2006, Khan_2008, Kinene_2016
39 Sher_2017 DRREP: deep ridge regressed epitope predictor Sher, Gene; Zhi, Degui; Zhang, Shaojie 2017 2017-10-03 COMM-USE N PMC5629616 28984193.0 10.1186/s12864-017-4024-8 f3uo372d 0.697281 Saw_A_2019, Lee_C_2017, Dai_Q_2012, Qi_Z_2018, Chang_2011 Mock_2019, Sollner_2008, Poran_2020, Desautels_2020
40 Yang_2007 Predicting Palmitoylation Sites Using a Regularised Bio-basis Function Neural Network Yang, Zheng Rong 2007 2007-01-01 PMC N PMC7120480 10.1007/978-3-540-72031-7_37 7qriyc1a 0.694072 Saw_A_2019, Dai_Q_2012, Qi_Z_2018, Chang_2011, Feng_2010 van_Dijk_2008, Zhang_2018, Tsukamoto_2013, Joshi_2017
41 Nagraj_2018 epicontacts: Handling, visualisation and analysis of epidemiological contacts Nagraj, VP; Randhawa, Nistara; Campbell, Finlay; Crellen, Thomas; Sudre, Bertrand; Jombart, Thibaut 2018 2018-10-11 COMM-USE N PMC6572866 31240097.0 10.12688/f1000research.14492.2 82820j9a 0.691003 UNKNOWN_2018, Lu_Q_2006, Montgomery_2004, Murray_2017 Robert_2020, Chen_2007, Chen_2010, Cori_2018
42 Bello-Orgaz_2016 Social big data: Recent achievements and new challenges Bello-Orgaz, Gema; Jung, Jason J.; Camacho, David 2016 2016-03-31 PMC N PMC7106299 10.1016/j.inffus.2015.08.005 3gv6469y 0.687618 Lu_Q_2006, Kurc_2006, Curcin_2005, Bocharov_2018 Souza_2020, Pfeiffer_2015, Lee_G_2009, Yang_2019
43 Li_Y_2017 A novel fast vector method for genetic sequence comparison Li, Yongkun; He, Lily; Lucy He, Rong; Yau, Stephen S.-T. 2017 2017-09-22 None N PMC5610321 28939913.0 10.1038/s41598-017-12493-2 jxd60j4o 0.686456 Chang_2011, Zheng_2008, Lee_C_2017, Qi_Z_2018, Dai_Q_2012 Nandy_2009
44 Hoang_2015 A new method to cluster DNA sequences using Fourier power spectrum Hoang, Tung; Yin, Changchuan; Zheng, Hui; Yu, Chenglong; Lucy He, Rong; Yau, Stephen S.-T. 2015 2015-05-07 PMC N PMC7094126 25747773.0 10.1016/j.jtbi.2015.02.026 nw3tybw9 0.684528 Chang_2011, Saw_A_2019, Qi_Z_2018, Dai_Q_2012 Zhao_2011, Wei_D_2012, Dong_2019, Otsuka_1999
45 Xiao_2017 Prediction of lncRNA-protein interactions using HeteSim scores based on heterogeneous networks Xiao, Yun; Zhang, Jingpu; Deng, Lei 2017 2017-06-16 COMM-USE N PMC5473862 28623317.0 10.1038/s41598-017-03986-1 qyd6qyjf 0.683558 Chang_2011, Saw_A_2019, Qi_Z_2018, Dai_Q_2012, Sen_D_2018 Liui_2020, Trypsteen_2016, Suresh_2015
46 Huang_2006 MIMOX: a web tool for phage display based epitope mapping Huang, Jian; Gutteridge, Alex; Honda, Wataru; Kanehisa, Minoru 2006 2006-10-12 COMM-USE N PMC1618411 17038191.0 10.1186/1471-2105-7-451 1ypgij14 0.681190 Montgomery_2004, Lee_C_2017, Lu_Q_2006, Chang_2011, Qi_Z_2018 Delhalle_2012, Mayrose_2007, van_der_Linden_2014, Kumar_2019
47 Yu_J_2009 TN curve: A novel 3D graphical representation of DNA sequence based on trinucleotides and its applications Yu, Jia-Feng; Sun, Xiao; Wang, Ji-Hua 2009 2009-12-07 PMC N PMC7094124 19679137.0 10.1016/j.jtbi.2009.08.005 i5fs2yye 0.681033 Chang_2011, Qi_Z_2018, Liao_2006, Saw_A_2019, Dai_Q_2012 Zou_S_2014, Xie_G_2011, Otsuka_1999, Deng_2014
48 Mu_Z_2019 DCGR: feature extractions from protein sequences based on CGR via remodeling multiple information Mu, Zengchao; Yu, Ting; Qi, Enfeng; Liu, Juntao; Li, Guojun 2019 2019-06-20 COMM-USE N PMC6587251 31221087.0 10.1186/s12859-019-2943-x ut9z9eo7 0.680292 Qi_Z_2018, Saw_A_2019, Dai_Q_2012, Chang_2011, Lee_C_2017 Li_C_2018, Lee_B_2009, Jia_J_2016
49 Souza_2020 An Innovative Big Data Predictive Analytics Framework over Hybrid Big Data Sources with an Application for Disease Analytics Souza, Joglas; Leung, Carson K.; Cuzzocrea, Alfredo 2020 2020-03-28 PMC N PMC7123615 10.1007/978-3-030-44041-1_59 mxprt6x6 0.679609 Bocharov_2018, Kurc_2006, Zhou_2020, Curcin_2005 Bello-Orgaz_2016, VanderWaal_2017, Yang_2019
50 Montgomery_2004 Sockeye: A 3D Environment for Comparative Genomics Montgomery, Stephen B.; Astakhova, Tamara; Bilenky, Mikhail; Birney, Ewan; Fu, Tony; Hassel, Maik; Melsopp, Craig; Rak, Marcin; Robertson, A. Gordon; Sleumer, Monica; Siddiqui, Asim S.; Jones, Steven J.M. 2004 2004-05-01 None N PMC479126 15123592.0 10.1101/gr.1890304 ts1eb8fk 0.675873 Cheng_2013, Chang_2011, Wang_2006, Dai_Q_2012 Wang_2006, Cheng_2013, Zhang_2017, Song_2005
51 Guo_F_2017 Accurate prediction of human essential genes using only nucleotide composition and association information Guo, Feng-Biao; Dong, Chuan; Hua, Hong-Li; Liu, Shuo; Luo, Hao; Zhang, Hong-Wan; Jin, Yan-Ting; Zhang, Kai-Yue 2017 2017-06-15 PMC N PMC7110051 28158612.0 10.1093/bioinformatics/btx055 vj9tv3or 0.674826 Chang_2011, Lee_C_2017, Qi_Z_2018, Saw_A_2019, Dai_Q_2012 Biao_2016, Xiao_2017, Nakai_1992, Suresh_2015
52 Dandekar_2017 Generating Fake but Realistic Headlines Using Deep Neural Networks Dandekar, Ashish; Zen, Remmy A. M.; Bressan, Stéphane 2017 2017-07-04 PMC N PMC7121779 10.1007/978-3-319-64471-4_34 zqmdcj1z 0.673993 Lipsitch_2014, Mooney_2013, Polverino_2017, Zheng_2020, Nelson_2012 Jiang_2017, Choi_2017, Tikhomirov_2018, Mock_2019
53 Wang_2006 MMDB: annotating protein sequences with Entrez's 3D-structure database Wang, Yanli; Addess, Kenneth J.; Chen, Jie; Geer, Lewis Y.; He, Jane; He, Siqian; Lu, Shennan; Madej, Thomas; Marchler-Bauer, Aron; Thiessen, Paul A.; Zhang, Naigong; Bryant, Stephen H. 2006 2006-11-29 NONCOMM N PMC1751549 17135201.0 10.1093/nar/gkl952 6qpsxmgi 0.672915 Cheng_2013, UNKNOWN_2016, Montgomery_2004, UNKNOWN_2018 Song_2005, Myllykoski_2017, Zemla_2011
54 Vanderwende_2007 Beyond SumBasic: Task-focused summarization with sentence simplification and lexical expansion Vanderwende, Lucy; Suzuki, Hisami; Brockett, Chris; Nenkova, Ani 2007 2007-11-30 PMC N PMC7115785 10.1016/j.ipm.2007.01.023 j22q89l9 0.667464 Polverino_2017, Zheng_2020, Lipsitch_2014, Nelson_2012, Nelson_2012 Tikhomirov_2018, Bertin_2017, Joshi_2020, McCrae_2008
55 Yan_C_2019 IILLS: predicting virus-receptor interactions based on similarity and semi-supervised learning Yan, Cheng; Duan, Guihua; Wu, Fang-Xiang; Wang, Jianxin 2019 2019-12-27 COMM-USE N PMC6933616 31881820.0 10.1186/s12859-019-3278-3 ch4kere3 0.667198 Saw_A_2019, Qi_Z_2018, Chang_2011, Lee_C_2017, Feng_2010 Mock_2019, Cho_M_2019, Bae_S_2011
56 Kurc_2006 An XML-based System for Synthesis of Data from Disparate Databases Kurc, Tahsin; Janies, Daniel A.; Johnson, Andrew D.; Langella, Stephen; Oster, Scott; Hastings, Shannon; Habib, Farhat; Camerlengo, Terry; Ervin, David; Catalyurek, Umit V.; Saltz, Joel H. 2006 2006-06-30 PMC N 16501185.0 10.1197/jamia.m1848 m0q52a2t 0.664907 Bocharov_2018, Montgomery_2004, Cheng_2013, Mendizabal-Ruiz_2018
57 Bendaña_2008 Colorstock, SScolor, Ratón: RNA alignment visualization tools Bendaña, Yuri R.; Holmes, Ian H. 2008 2008-02-15 PMC N PMC7109877 18218657.0 10.1093/bioinformatics/btm635 r9diwa8y 0.658227 UNKNOWN_2018, UNKNOWN_2016, Montgomery_2004, Cheng_2013 Reeder_2007, Yamasaki_2019
58 Wei_D_2012 A novel hierarchical clustering algorithm for gene sequences Wei, Dan; Jiang, Qingshan; Wei, Yanjie; Wang, Shengrui 2012 2012-07-23 COMM-USE N PMC3443659 22823405.0 10.1186/1471-2105-13-174 61djk4bs 0.657866 Chang_2011, Saw_A_2019, Lee_C_2017, Qi_Z_2018, Dai_Q_2012 Otsuka_1999, Saw_A_2019, Dong_2019, Zhao_2011
59 Qi_Z_2018 Novel Method of 3-Dimensional Graphical Representation for Proteins and Its Application Qi, Zhao-Hui; Li, Ke-Cheng; Ma, Jin-Long; Yao, Yu-Hua; Liu, Ling-Yun 2018 2018-06-12 NONCOMM N PMC6024350 29977111.0 10.1177/1176934318777755 fvuwick5 0.657435 Chang_2011, Saw_A_2019, Dai_Q_2012, Liao_2006 Deng_2014, Ghosh_2011, Li_C_2018
60 Tagashira_2020 PhyloFold: Precise and Swift Prediction of RNA Secondary Structures to Incorporate Phylogeny among Homologs Masaki Tagashira 2020 2020-03-06 BioRxiv N 10.1101/2020.03.05.975797 l72x4wn3 0.656981 Lee_C_2017, Chang_2011, Saw_A_2019, Qi_Z_2018, Dai_Q_2012 Sperschneider_2012, Zhang_2013, Choo_2009, Low_J_2010
61 Saw_A_2019 Alignment-free similarity analysis for protein sequences based on fuzzy integral Saw, Ajay Kumar; Tripathy, Binod Chandra; Nandi, Soumyadeep 2019 2019-02-26 None N PMC6391537 30808983.0 10.1038/s41598-019-39477-8 sgw66xhn 0.656479 Saw_A_2019, Chang_2011, Qi_Z_2018, Lee_C_2017 Saw_A_2019, Xie_X_2012, Wu_C_2018, Li_C_2018
62 Ren_R_2016 The attribute reductions of three-way concept lattices Ren, Ruisi; Wei, Ling 2016 2016-05-01 PMC N PMC7126604 10.1016/j.knosys.2016.01.045 jzpt9ldx 0.654574 Bocharov_2018, Zheng_2020, Sen_D_2018, Polverino_2017, Qi_Z_2018 Li_J_2015, Liu_K_2007, Vanderwende_2007, Cai_Y_2019
63 Ren_H_2017 Anomaly detection based on a dynamic Markov model Ren, Huorong; Ye, Zhixing; Li, Zhiwu 2017 2017-10-31 PMC N PMC7094635 10.1016/j.ins.2017.05.021 ufuin9r4 0.650538 Bocharov_2018, Chang_2011, Qi_Z_2018, Saw_A_2019, Liou_2013 Wieland_2007, Craigmile_2007, Mohamad_Mohsin_2014
64 Kinene_2016 Rooting Trees, Methods for Kinene, T.; Wainaina, J.; Maina, S.; Boykin, L.M. 2016 2016-12-31 PMC N PMC7149615 10.1016/b978-0-12-800049-6.00215-8 3atcqejc 0.648534 Zheng_2008, Munjal_2018, Chang_2011, Chang_2011 Gamermann_2014, HESS_2007, Banks_2006
65 Sperschneider_2012 Predicting pseudoknotted structures across two RNA sequences Sperschneider, Jana; Datta, Amitava; Wise, Michael J. 2012 2012-12-01 COMM-USE N PMC3516145 23044552.0 10.1093/bioinformatics/bts575 iuglkdcp 0.648336 Wang_2006, Lee_C_2017, Dawson_2007, Montgomery_2004 Low_J_2010, Kai_Z_2019
66 Gao_L_2011 Remote Data Retrieval for Bioinformatics Applications: An Agent Migration Approach Gao, Lei; Dai, Hua; Zhang, Tong-Liang; Chou, Kuo-Chen 2011 2011-06-20 COMM-USE N PMC3119054 21701677.0 10.1371/journal.pone.0020949 etifey83 0.646616 Zheng_2020, Bocharov_2018, Polverino_2017, Lu_Q_2006, Nelson_2012 Pfeiffer_2015, Lefkowitz_2008, Stokes_1993, Lu_Q_2006
67 Masoudi-Sobhanzadeh_2016 World Competitive Contests (WCC) algorithm: A novel intelligent optimization algorithm for biological and non-biological problems Masoudi-Sobhanzadeh, Yosef; Motieghader, Habib 2016 2016-12-31 PMC N 10.1016/j.imu.2016.06.002 z1xao2ic 0.636979 Zheng_2020, Polverino_2017, Mooney_2013, Bocharov_2018, Lee_C_2017 Mousavi_2012, Amiri_2018, Kai_Z_2019, Minhas_2020
68 Deng_2014 DV-Curve Representation of Protein Sequences and Its Application Deng, Wei; Luan, Yihui 2014 2014-05-08 COMM-USE N PMC4034481 24899916.0 10.1155/2014/203871 8j04y50s 0.634849 Chang_2011, Qi_Z_2018, Liao_2006, Saw_A_2019, Dai_Q_2012 Godeny_1990
69 Munteanu_2008 Natural/random protein classification models based on star network topological indices Munteanu, Cristian Robert; González-Díaz, Humberto; Borges, Fernanda; de Magalhães, Alexandre Lopes 2008 2008-10-21 PMC N PMC7094162 18692072.0 10.1016/j.jtbi.2008.07.018 g4k6pc82 0.634151 Saw_A_2019, Qi_Z_2018, Liao_2006, Dai_Q_2012, Chang_2011 Liu_X_2009, Li_C_2018, Perez-Bello_2009, Xiao_2005
70 Hoffman_2016 Automatically quantifying the scientific quality and sensationalism of news records mentioning pandemics: validating a maximum entropy machine-learning model Hoffman, Steven J.; Justicz, Victoria 2016 2016-07-31 PMC N PMC7127105 26854419.0 10.1016/j.jclinepi.2015.12.010 df5mfd82 0.633627 UNKNOWN_2010, Lipsitch_2014, Nelson_2012, Nelson_2012, Mooney_2013 Kobres_2019, Robinson_2013, Ak_Ç_2020, Kobres_2019
71 Delli_Ponti_2018 A Method for RNA Structure Prediction Shows Evidence for Structure in lncRNAs Delli Ponti, Riccardo; Armaos, Alexandros; Marti, Stefanie; Tartaglia, Gian Gaetano 2018 2018-12-03 COMM-USE N PMC6286970 30560136.0 10.3389/fmolb.2018.00111 scn7b4c6 0.631240 Chang_2011, Saw_A_2019, Liao_2006, Qi_Z_2018, Dai_Q_2012 ponti_2018, Yamasaki_2019
72 Song_2005 Efficient Parameterized Algorithm for Biopolymer Structure-Sequence Alignment Song, Yinglei; Liu, Chunmei; Huang, Xiuzhen; Malmberg, Russell L.; Xu, Ying; Cai, Liming 2005 2005-01-01 PMC N PMC7121179 10.1007/11557067_31 gjild96e 0.630315 Chang_2011, Qi_Z_2018, Dai_Q_2012, Saw_A_2019 Myllykoski_2017
73 Al-karawi_2020 Machine Learning Analysis of Chest CT Scan Images as a Complementary Digital Test of Coronavirus (COVID-19) Patients Dhurgham Al-karawi; Shakir Al-Zaidi; Nisreen Polus; Sabah Jassim 2020 2020-04-17 BioRxiv Y 10.1101/2020.04.13.20063479 w8nwj3u6 0.630226 Polverino_2017, Bocharov_2018, Zheng_2020, Qi_Z_2018, Chang_2011
74 Khanna_2019 Prediction of novel mouse TLR9 agonists using a random forest approach Khanna, Varun; Li, Lei; Fung, Johnson; Ranganathan, Shoba; Petrovsky, Nikolai 2019 2019-12-20 COMM-USE N PMC6924143 31856726.0 10.1186/s12860-019-0241-0 wo6356vq 0.630213 Saw_A_2019, Chang_2011, Qi_Z_2018, Dai_Q_2012, Feng_2010 Li_Y_2013, Villanueva_2011, Shen_2017
75 Jiang_2009 Reasoning within expressive fuzzy rough description logics Jiang, Yuncheng; Wang, Ju; Deng, Peimin; Tang, Suqin 2009 2009-12-01 PMC N PMC7133619 10.1016/j.fss.2009.01.004 elf16dno 0.624332 Jiang_2009, Liou_2013, Bocharov_2018, Li_J_2015 Jiang_2009, Capotorti_2006, Peng_2018, Fox_J_2003
76 Capotorti_2006 Management of uncertainty orderings through ASP Capotorti, Andrea; Formisano, Andrea 2006 2006-12-31 PMC N PMC7151761 10.1016/b978-044452075-3/50012-1 gi8c1omv 0.622847 Bocharov_2018, Mooney_2013, Zheng_2020, Chowell_2017 Jiang_2009, Jiang_2009, Fox_J_2003, Chu_H_2008
77 Dong_2017 Virus Database and Online Inquiry System Based on Natural Vectors Dong, Rui; Zheng, Hui; Tian, Kun; Yau, Shek-Chung; Mao, Weiguang; Yu, Wenping; Yin, Changchuan; Yu, Chenglong; He, Rong Lucy; Yang, Jie; Yau, Stephen ST 2017 2017-12-17 NONCOMM N PMC5751915 29308007.0 10.1177/1176934317746667 09a32vyg 0.622072 UNKNOWN_2018, Cheng_2013, O'Leary_2016, Xu_Z_2009 Hirahata_2006, Pellet_2009, Han_L_2005
78 McCrae_2008 Synonym set extraction from the biomedical literature by lexical pattern discovery McCrae, John; Collier, Nigel 2008 2008-03-24 COMM-USE N PMC2335115 18366721.0 10.1186/1471-2105-9-159 ycbyx6vu 0.621768 Polverino_2017, Lee_C_2017, Liou_2013, Chang_2011, Bocharov_2018 Du_X_2019, Yu_A_2011, Greenbaum_2009, Robson_2016
79 Biao_2016 Accurate prediction of human essential genes using only nucleotide composition and association information Feng-Biao Biao; Chuan Dong; Hong-Li Hua; Shuo Liu; Hao Luo; Hong-Wan Zhang; Yan-Ting Jin; Kai-Yue Zhang 2016 2016-10-28 BioRxiv N 10.1101/084129 w49x7kca 0.619546 Chang_2011, Lee_C_2017, Qi_Z_2018, Saw_A_2019, Dai_Q_2012 Guo_F_2017, Xiao_2017, Kalia_2016, Levy_2000
80 Gibbs_2014 Multi-omic network signatures of disease Gibbs, David L.; Gralinski, Lisa; Baric, Ralph S.; McWeeney, Shannon K. 2014 2014-01-07 COMM-USE N PMC3882664 24432028.0 10.3389/fgene.2013.00309 hs30wwiq 0.619435 Montgomery_2004, Qi_Z_2018, Chang_2011, Kurc_2006, Yu_H_2007 Xu_P_2019, McGarvey_2009, Prokop_2020, McClure_2019
81 AlMoammar_2018 Selecting Accurate Classifier Models for a MERS-CoV Dataset AlMoammar, Afnan; AlHenaki, Lubna; Kurdi, Heba 2018 2018-11-09 PMC N PMC7123473 10.1007/978-3-030-01054-6_74 fridlqhv 0.617276 Saw_A_2019, Lee_C_2017, Zuo_G_2011, Saw_A_2019 Faridi_2016, Alfaraj_2018
82 Abo-Elkhier_2019 Measuring Similarity among Protein Sequences Using a New Descriptor Abo-Elkhier, Mervat M.; Abd Elwahaab, Marwa A.; Abo El Maaty, Moheb I. 2019 2019-11-22 COMM-USE N PMC6893242 31886192.0 10.1155/2019/2796971 41atidai 0.615348 Chang_2011, Qi_Z_2018, Lee_C_2017, Dai_Q_2012, Saw_A_2019 Li_C_2018, Lee_B_2009, Wu_C_2018
83 Zou_S_2014 A 2D graphical representation of the sequences of DNA based on triplets and its application Zou, Sai; Wang, Lei; Wang, Junfeng 2014 2014-01-02 COMM-USE N PMC3896961 24383852.0 10.1186/1687-4153-2014-1 gkek599u 0.614079 Chang_2011, Qi_Z_2018, Liao_2006, Dai_Q_2012, Saw_A_2019 Yu_J_2009, Otsuka_1999, Nandy_2009, Xie_G_2011
84 EL-Manzalawy_2008 Predicting linear B-cell epitopes using string kernels EL-Manzalawy, Yasser; Dobbs, Drena; Honavar, Vasant 2008 2008-07-01 None N PMC2683948 18496882.0 10.1002/jmr.893 rtpbltkf 0.612419 Saw_A_2019, Chang_2011, Qi_Z_2018, Lee_C_2017, Dai_Q_2012 Hua_R_2013, Lon_J_2020, Lollier_2011, Huang_2008
85 Maday_2020 An adaptive parareal algorithm Maday, Y.; Mula, O. 2020 2020-04-09 PMC N 10.1016/j.cam.2020.112915 ejaditj5 0.611928 Bocharov_2018, Liou_2013, Qi_Z_2018, Simon_2010 Acar_2016, Ding_2013, Chen_2015
86 Liou_2013 Structural Complexity of DNA Sequence Liou, Cheng-Yuan; Tseng, Shen-Han; Cheng, Wei-Chen; Tsai, Huai-Ying 2013 2013-04-04 COMM-USE N PMC3638703 23662161.0 10.1155/2013/628036 w8luu86h 0.611529 Bocharov_2018, Qi_Z_2018, Chang_2011, Lee_C_2017 Otsuka_1999, Chang_2011, Song_2005
87 Qureshi_2013 VIRsiRNApred: a web server for predicting inhibition efficacy of siRNAs targeting human viruses Qureshi, Abid; Thakur, Nishant; Kumar, Manoj 2013 2013-12-11 COMM-USE N PMC3878835 24330765.0 10.1186/1479-5876-11-305 ap60vws9 0.608621 Naito_2007, Saw_A_2019, Lee_C_2017, Chang_2011, Liu_Y_2008 Thakur_2011, Zhou_2012, Zhu_X_2015, Sui_H_2009
88 Tien_2008 Methods for simultaneously identifying coherent local clusters with smooth global patterns in gene expression profiles Tien, Yin-Jing; Lee, Yun-Shien; Wu, Han-Ming; Chen, Chun-Houh 2008 2008-03-20 COMM-USE N PMC2322988 18366693.0 10.1186/1471-2105-9-155 735m0znd 0.607660 Chang_2011, Qi_Z_2018, Saw_A_2019, Dai_Q_2012, Feng_2010 Wei_D_2012, Ragonnet-Cronin_2013, Gatherer_2007, Pessia_2015
89 Shen_2018 RPiRLS: Quantitative Predictions of RNA Interacting with Any Protein of Known Sequence Shen, Wen-Jun; Cui, Wenjuan; Chen, Danze; Zhang, Jieming; Xu, Jianzhen 2018 2018-02-28 COMM-USE N PMC6017498 29495575.0 10.3390/molecules23030540 6oca1mrm 0.607149 Saw_A_2019, Qi_Z_2018, Chang_2011, Dai_Q_2012, Lee_C_2017 Muppirala_2011, Suresh_2015, Järvelin_2016, Xia_H_2015
90 Chung_2007 RE-MuSiC: a tool for multiple sequence alignment with regular expression constraints Chung, Yun-Sheng; Lee, Wei-Hsun; Tang, Chuan Yi; Lu, Chin Lung 2007 2007-05-08 NONCOMM N PMC1933182 17488842.0 10.1093/nar/gkm275 cjcvm3x7 0.606465 Lee_C_2017, Chang_2011, Qi_Z_2018, Dai_Q_2012, Kirillova_2009 Lu_C_2005, Song_2005, Zemla_2011, Altschul_1991
91 Kshirsagar_2013 Multitask learning for host–pathogen protein interactions Kshirsagar, Meghana; Carbonell, Jaime; Klein-Seetharaman, Judith 2013 2013-07-01 NONCOMM N PMC3694681 23812987.0 10.1093/bioinformatics/btt245 sdgt2ms5 0.605957 Bocharov_2018, Gamermann_2014, Sen_D_2018, Chang_2011, Qi_Z_2018 Arnold_2012, Mitchell_2019, Chasman_2016, Mitchell_2013
92 Bitard-Feildel_2018 HCAtk and pyHCA: A Toolkit and Python API for the Hydrophobic Cluster Analysis of Protein Sequences Tristan Bitard-Feildel; Isabelle Callebaut 2018 2018-01-18 BioRxiv N 10.1101/249995 maf96bof 0.605137 Wang_2006, Lee_C_2017, Montgomery_2004, Cheng_2013, Lu_Q_2006 Pridgeon_2003, Wang_2013, Yu_L_2017, Choo_2009
93 Cármenes_1989 Predict7, a program for protein structure prediction Cármenes, R.S.; Freije, J.P.; Molina, M.M.; Martín, J.M. 1989 1989-03-15 PMC N PMC7111062 2539121.0 10.1016/0006-291x(89)90049-1 k4eetalp 0.604694 Montgomery_2004, Lu_Q_2006, Lee_C_2017, Wang_2006, Saw_A_2019 Choo_2009, Wang_2013
94 Acar_2016 Adaptive multiresolution method for MAP reconstruction in electron tomography Acar, Erman; Peltonen, Sari; Ruotsalainen, Ulla 2016 2016-11-30 PMC N PMC7115799 27522477.0 10.1016/j.ultramic.2016.08.002 3u81ntle 0.603472 Polverino_2017, Qi_Z_2018, Bocharov_2018, Dai_Q_2012 Saad_2005, Punjani_2019, Zhang_2011, Chichón_2012
95 Xu_J_2010 QSAR Studies on Andrographolide Derivatives as α-Glucosidase Inhibitors Xu, Jun; Huang, Sichao; Luo, Haibin; Li, Guoji; Bao, Jiaolin; Cai, Shaohui; Wang, Yuqiang 2010 2010-03-02 COMM-USE N PMC2869241 20479989.0 10.3390/ijms11030880 s0ps9rd0 0.600900 Qi_Z_2018, Saw_A_2019, Dai_Q_2012, Liao_2006, Feng_2010 Zhong_2015, Li_X_2019, Li_W_2011, Xie_J_2018
96 Liu_S_2012 Application of Consensus Scoring and Principal Component Analysis for Virtual Screening against β-Secretase (BACE-1) Liu, Shu; Fu, Rao; Zhou, Li-Hua; Chen, Sheng-Ping 2012 2012-06-11 COMM-USE N PMC3372491 22701601.0 10.1371/journal.pone.0038086 7vwpvcdd 0.599296 Saw_A_2019, Qi_Z_2018, Dai_Q_2012, Feng_2010, Polverino_2017 Lee_H_2014, Grazioso_2012, Theerawatanasirikul_2020
97 Dogantekin_2013 Automatic RNA virus classification using the Entropy-ANFIS method Dogantekin, Esin; Avci, Engin; Erkus, Oznur 2013 2013-07-31 PMC N 10.1016/j.dsp.2013.01.011 xoepiscc 0.597797 Polverino_2017, Qi_Z_2018, Saw_A_2019, Dai_Q_2012, Chang_2011
98 Xu_Z_2009 CVTree update: a newly designed phylogenetic study platform using composition vectors and whole genomes Xu, Zhao; Hao, Bailin 2009 2009-07-01 NONCOMM N PMC2703908 19398429.0 10.1093/nar/gkp278 02opdk0m 0.597241 Cheng_2013, Montgomery_2004, Lee_C_2017, Chang_2011 Zhang_2017, Cheng_2013, Yu_Z_2010
99 Zhao_2013 Design and Experimental Approach to the Construction of a Human Signal-Molecule-Profiling Database Zhao, Xinyan; Dong, Tao 2013 2013-12-09 COMM-USE N PMC3881147 24351788.0 10.3390/ijerph10126887 l56eboio 0.595807 Zheng_2020, Polverino_2017, Nelson_2012, Nelson_2012, Lu_Q_2006 Deiab_2013, Jia_J_2016, Leu_S_2010, Chiba_2012
100 Dórea_2013 Exploratory Analysis of Methods for Automated Classification of Laboratory Test Orders into Syndromic Groups in Veterinary Medicine Dórea, Fernanda C.; Muckle, C. Anne; Kelton, David; McClure, JT.; McEwen, Beverly J.; McNab, W. Bruce; Sanchez, Javier; Revie, Crawford W. 2013 2013-03-07 COMM-USE N PMC3591392 23505427.0 10.1371/journal.pone.0057334 yts4xppb 0.590109 Bocharov_2018, Saw_A_2019, Polverino_2017, Liou_2013, Chang_2011 AlMoammar_2018, Wu_J_2020
101 Yu_A_2011 A comparison of two methods for retrieving ICD-9-CM data: The effect of using an ontology-based method for handling terminology changes Yu, Alexander C.; Cimino, James J. 2011 2011-04-30 None N PMC3440000 21262390.0 10.1016/j.jbi.2011.01.005 abrweljg 0.589284 Zheng_2020, Polverino_2017, Nelson_2012, Nelson_2012, Mooney_2013 McCrae_2008, Du_X_2019, Robson_2016, McComb_2003
102 Höhl_2007 Is Multiple-Sequence Alignment Required for Accurate Inference of Phylogeny? Höhl, Michael; Ragan, Mark A. 2007 2007-04-23 PMC N PMC7107264 17454975.0 10.1080/10635150701294741 lqviqh3m 0.587252 Chang_2011, Saw_A_2019, Lee_C_2017, Qi_Z_2018 Zhang_2017, Hilton_2018
103 Saw_A_2019 Alignment-free method for DNA sequence clustering using Fuzzy integral similarity Saw, Ajay Kumar; Raj, Garima; Das, Manashi; Talukdar, Narayan Chandra; Tripathy, Binod Chandra; Nandi, Soumyadeep 2019 2019-03-06 None N PMC6403383 30842590.0 10.1038/s41598-019-40452-6 qaqvg453 0.585943 Saw_A_2019, Chang_2011, Lee_C_2017, Dai_Q_2012 Wei_D_2012, Dong_2019, Zhang_2017, Otsuka_1999
104 ponti_2018 A method for RNA structure prediction shows evidence for structure in lncRNAs Riccardo Delli ponti; Alexandros Armaos; Stefanie Marti; Gian Gaetano Tartaglia 2018 2018-04-16 BioRxiv N 10.1101/284869 jb447ndz 0.585861 Chang_2011, Saw_A_2019, Liao_2006, Qi_Z_2018, Dai_Q_2012 Delli_Ponti_2018, Sperschneider_2012
105 Dong_2019 A Novel Approach to Clustering Genome Sequences Using Inter-nucleotide Covariance Dong, Rui; He, Lily; He, Rong Lucy; Yau, Stephen S.-T. 2019 2019-04-09 COMM-USE N PMC6465635 31024610.0 10.3389/fgene.2019.00234 buc4dd5y 0.583195 Lee_C_2017, Chang_2011, Saw_A_2019, Saw_A_2019, Dai_Q_2012 Zhang_2017, Yu_Z_2010, Godeny_1990, Pessia_2015
106 Pathegama_2005 Interactive Real-time Image Analysis System for Distant Operation Pathegama, Mahinda P.; Göl, Özdemir 2005 2005-01-01 PMC N PMC7121714 10.1007/0-387-26325-x_3 5nc8f3a4 0.579875 May_E_2016, Montgomery_2004, Mendizabal-Ruiz_2018, Bocharov_2018 Kylberg_2009, Graham_2007, Liu_Q_2005, Acar_2016
107 Muthukrishnan_2014 Support vector machine (SVM) based multiclass prediction with basic statistical analysis of plasminogen activators Muthukrishnan, Selvaraj; Puri, Munish; Lefevre, Christophe 2014 2014-01-27 COMM-USE N PMC3924408 24468032.0 10.1186/1756-0500-7-63 8c75hp7r 0.578759 Qi_Z_2018, Saw_A_2019, Chang_2011, Dai_Q_2012, Lee_C_2017 Rimstad_1995, Cai_C_2006, Huang_2012, Böttcher-Friebertshäuser_2018
108 Sadreyev_2003 Profile–profile comparisons by COMPASS predict intricate homologies between protein families Sadreyev, Ruslan I.; Baker, David; Grishin, Nick V. 2003 2003-10-23 PMC N PMC2366929 14500884.0 iomwwsud 0.578045 Saw_A_2019, Lee_C_2017, Chang_2011, Qi_Z_2018 Das_J_2017, Zemla_2011, Mönttinen_2019
109 Sun_P_2015 Conformational B-Cell Epitope Prediction Method Based on Antigen Preprocessing and Mimotopes Analysis Sun, Pingping; Ju, Haixu; Zhang, Baowen; Gu, Yu; Liu, Bo; Huang, Yanxin; Zhang, Huijie; Li, Yuxin 2015 2015-01-29 COMM-USE N PMC4326220 25705652.0 10.1155/2015/257030 qk1pr335 0.576468 Saw_A_2019, Chang_2011, Lee_C_2017, Dai_Q_2012, Qi_Z_2018 Lon_J_2020, Lollier_2011, Xue_G_2013, Li_S_2016
110 Liang_2018 Forecasting influenza epidemics by integrating internet search queries and traditional surveillance data with the support vector machine regression model in Liaoning, from 2011 to 2015 Liang, Feng; Guan, Peng; Wu, Wei; Huang, Desheng 2018 2018-06-25 COMM-USE N PMC6022725 29967755.0 10.7717/peerj.5134 yupm6smb 0.575952 UNKNOWN_2018, Lipsitch_2014, Saw_A_2019, Lee_C_2017 Yuan_2013, Chen_2019, Martin_2011, Distante_2020
111 Zhong_2020 CryoDRGN: Reconstruction of heterogeneous structures from cryo-electron micrographs using neural networks Ellen D. Zhong; Tristan Bepler; Bonnie Berger; Joseph H Davis 2020 2020-03-29 BioRxiv N 10.1101/2020.03.27.003871 oohx14kl 0.574269 Qi_Z_2018, Chang_2011, Liu_Z_2008, Montgomery_2004 Jonić_2016, Punjani_2020, Pfab_2020, DiMaio_2016
112 Muppirala_2011 Predicting RNA-Protein Interactions Using Only Sequence Information Muppirala, Usha K; Honavar, Vasant G; Dobbs, Drena 2011 2011-12-22 COMM-USE N PMC3322362 22192482.0 10.1186/1471-2105-12-489 8k7d1riv 0.573156 Qi_Z_2018, Chang_2011, Saw_A_2019, Lee_C_2017, Dai_Q_2012 Suresh_2015, Shen_2018, Li_Z_2009
113 Lespinats_2011 ColorPhylo: A Color Code to Accurately Display Taxonomic Classifications Lespinats, Sylvain; Fertil, Bernard 2011 2011-11-13 PMC N PMC3255521 22253532.0 10.4137/ebo.s7565 hohrbxyj 0.573054 Chang_2011, Polverino_2017, Qi_Z_2018, Dai_Q_2012, Feng_2010 Harper_2013, Lung_2013
114 Schuck_2009 On computational approaches for size-and-shape distributions from sedimentation velocity analytical ultracentrifugation Schuck, Peter 2009 2009-10-06 PMC N PMC2892069 19806353.0 10.1007/s00249-009-0545-7 ip0fxvhp 0.572262 Bocharov_2018, Liou_2013, Qi_Z_2018, Chowell_2017, Mendizabal-Ruiz_2018 Chou_2011, Jonić_2016, Jonić_2016
115 Izakian_2012 A new PSO-optimized geometry of spatial and spatio-temporal scan statistics for disease outbreak detection Izakian, Hesam; Pedrycz, Witold 2012 2012-06-30 PMC N PMC7104009 10.1016/j.swevo.2012.02.001 mrbi0a7r 0.572198 Bifolchi_2013, Chang_2011, Kenah_2007, Welch_2011, Polverino_2017 Takahashi_2008, Cao_Z_2010, Wen_T_2007, Routledge_2019
116 Kai_Z_2019 An efficient simulated annealing algorithm for the RNA secondary structure prediction with Pseudoknots Kai, Zhang; Yuting, Wang; Yulin, Lv; Jun, Liu; Juanjuan, He 2019 2019-12-27 COMM-USE N PMC6933665 31881969.0 10.1186/s12864-019-6300-2 9z8z03rp 0.570747 Polverino_2017, Saw_A_2019, Chang_2011, Qi_Z_2018 Kai_Z_2018, Sperschneider_2012
117 Li_M_2015 Predicting RNA Secondary Structures: One-grammar-fits-all Solution Li, Menglu; Cheng, Micheal; Ye, Yongtao; Hon, Wk; Ting, Hf; Lam, Tw; Tang, Cy; Wong, Thomas; Yiu, Sm 2015 2015-01-01 PMC N PMC7121278 10.1007/978-3-319-19048-8_18 p8puu1jk 0.570415 Lee_C_2017, Chang_2011, Qi_Z_2018, Saw_A_2019, Dost_2006 Fricke_2019, Low_J_2010, Gao_J_2010
118 Amiri_2018 Time-constrained maximal covering routing problem Amiri, Afsaneh; Salari, Majid 2018 2018-12-04 PMC N PMC7079968 10.1007/s00291-018-0541-3 j51gaesp 0.568510 Polverino_2017, Chang_2011, Mousavi_2012, Lee_C_2017, Saw_A_2019 Feng_2017, Mousavi_2012, Xiao_2006, Yoon_2015
119 Xie_X_2012 Protein sequence analysis based on hydropathy profile of amino acids Xie, Xiao-li; Zheng, Li-fei; Yu, Ying; Liang, Li-ping; Guo, Man-cai; Song, John; Yuan, Zhi-fa 2012 2012-01-27 PMC N PMC3274743 22302429.0 10.1631/jzus.b1100052 g1ob16b9 0.567828 Saw_A_2019, Qi_Z_2018, Chang_2011, Dai_Q_2012 Das_J_2017, Godeny_1990
120 Perez-Bello_2009 Alignment-free prediction of mycobacterial DNA promoters based on pseudo-folding lattice network or star-graph topological indices Perez-Bello, Alcides; Munteanu, Cristian Robert; Ubeira, Florencio M.; Lopes De Magalhães, Alexandre; Uriarte, Eugenio; González-Díaz, Humberto 2009 2009-02-07 PMC N PMC7126577 18992259.0 10.1016/j.jtbi.2008.09.035 us6ay892 0.565524 Qi_Z_2018, Chang_2011, Saw_A_2019, Dai_Q_2012, Bocharov_2018 Singleton_2018, Zhang_2015
121 Zhao_2011 A novel clustering method via nucleotide-based Fourier power spectrum analysis Zhao, Bo; Duan, Victor; Yau, Stephen S.-T. 2011 2011-06-21 PMC N PMC7094093 21443881.0 10.1016/j.jtbi.2011.03.029 7u5frg8w 0.565077 Chang_2011, Liao_2006, Saw_A_2019, Qi_Z_2018 Hoang_2015, Godeny_1990, Wei_D_2012, Dong_2019
122 Qi_Z_2010 New method for global alignment of 2 DNA sequences by the tree data structure Qi, Zhao-Hui; Qi, Xiao-Qin; Liu, Chen-Chen 2010 2010-03-21 PMC N PMC7094160 20025888.0 10.1016/j.jtbi.2009.12.012 88eqc5ah 0.564359 Saw_A_2019, Saw_A_2019, Qi_Z_2018, Feng_2010 Song_2005, Otsuka_1999, Saw_A_2019, Dong_2019
123 Guo_Y_2010 A novel way to numerically characterize DNA sequences and its application Guo, Ying; Wang, Yan‐fang; Zhang, Sheng‐li 2010 2010-11-03 PMC N PMC7168550 10.1002/qua.22872 sfuee2e9 0.563584 Chang_2011, Liao_2006, Saw_A_2019, Qi_Z_2018, Saw_A_2019
124 Xiao_2005 Using cellular automata to generate image representation for biological sequences Xiao, X.; Shao, S.; Ding, Y.; Huang, Z.; Chen, X.; Chou, K.-C. 2005 2005-02-10 PMC N PMC7088382 15700108.0 10.1007/s00726-004-0154-9 54ioyzbc 0.563119 Qi_Z_2018, Chang_2011, Montgomery_2004, Lee_C_2017, Liou_2013 Xiao_2005, Song_2005, Gupta_2019
125 Tsui_2003 Technical description of RODS: a real-time public health surveillance system Tsui, Fu-Chiang; Espino, Jeremy U.; Dato, Virginia M.; Gesteland, Per H.; Hutman, Judith; Wagner, Michael M. 2003 2003-10-31 None N PMC212776 12807803.0 10.1197/jamia.m1345 jg13scgo 0.561539 Rodier_2007, Murray_2017, Griffiths_2010, Wei_B_2011, Fielding_2014 Hale_2019, Fan_S_2010, Lazarus_2006
126 Du_Q_2017 2L-PCA: a two-level principal component analyzer for quantitative drug design and its applications Du, Qi-Shi; Wang, Shu-Qing; Xie, Neng-Zhong; Wang, Qing-Yan; Huang, Ri-Bo; Chou, Kuo-Chen 2017 2017-08-01 COMM-USE N PMC5642577 29050302.0 10.18632/oncotarget.19757 jbmj21c5 0.561385 Bocharov_2018, Leach_2010, Kirillova_2009, Liou_2013, Qi_Z_2018 Zhou_2010, Jia_J_2016, He_Z_2010, Wang_2018
127 David_2010 Using simple artificial intelligence methods for predicting amyloidogenesis in antibodies David, Maria Pamela C; Concepcion, Gisela P; Padlan, Eduardo A 2010 2010-02-08 COMM-USE N PMC3098112 20144194.0 10.1186/1471-2105-11-79 6yvdv1xk 0.559511 Saw_A_2019, Chang_2011, Qi_Z_2018, Lee_C_2017, Feng_2010 Endres_2020, Lollier_2011, AlMoammar_2018, Zamanzadeh_2017
128 Pérez-Montoto_2009 Study of peptide fingerprints of parasite proteins and drug–DNA interactions with Markov-Mean-Energy invariants of biopolymer molecular-dynamic lattice networks Pérez-Montoto, Lázaro Guillermo; Dea-Ayuela, María Auxiliadora; Prado-Prado, Francisco J.; Bolas-Fernández, Francisco; Ubeira, Florencio M.; González-Díaz, Humberto 2009 2009-07-17 PMC N PMC7111648 10.1016/j.polymer.2009.05.055 zamrnne9 0.559162 Qi_Z_2018, Saw_A_2019, Chang_2011, Dai_Q_2012, Liao_2006 Bissaro_2020, Zhang_2015, Kumar_2013, Wang_2013
129 UNKNOWN_2019 UniProt: a worldwide hub of protein knowledge None 2019 2019-01-08 COMM-USE N PMC6323992 30395287.0 10.1093/nar/gky1049 pt7v3gb4 0.558129 UNKNOWN_2018, O'Leary_2016, Cheng_2013, UNKNOWN_2016 Choo_2009, van_Dijk_2008, Myler_2008, Bagowski_2010
130 Sloane_2020 Chapter 83 Artificial intelligence in medical devices and clinical decision support systems Sloane, Elliot B.; J. Silva, Ricardo 2020 2020-12-31 PMC N PMC7153310 10.1016/b978-0-12-813467-2.00084-5 7kskldmn 0.558112 Lu_Q_2006, Jiang_2009, Largo_2016, David_2013 Pourhomayoun_2020, Dórea_2013
131 Li_C_2018 Protein Sequence Comparison and DNA-binding Protein Identification with Generalized PseAAC and Graphical Representation Li, Chun; Zhao, Jialing; Wang, Changzhong; Yao, Yuhua 2018 2018-02-23 NONCOMM N PMC5930480 29380690.0 10.2174/1386207321666180130100838 u1imic5l 0.557754 Saw_A_2019, Qi_Z_2018, Chang_2011, Dai_Q_2012, Lee_C_2017 Zhang_2015, Godeny_1990
132 Lam_H_2017 Improved Algorithmic Complexity for the 3SEQ Recombination Detection Algorithm Lam, Ha Minh; Ratmann, Oliver; Boni, Maciej F 2017 2017-10-03 NONCOMM N PMC5850291 29029186.0 10.1093/molbev/msx263 ev6acl7b 0.556321 Chang_2011, Lee_C_2017, Saw_A_2019, Feng_2010, Dai_Q_2012 Wang_2010, Zhang_2017, Muslin_2019, Pessia_2015
133 Takahashi_2008 A flexibly shaped space-time scan statistic for disease outbreak detection and monitoring Takahashi, Kunihiko; Kulldorff, Martin; Tango, Toshiro; Yih, Katherine 2008 2008-04-11 COMM-USE N PMC2386448 18402711.0 10.1186/1476-072x-7-14 fpiew1jy 0.555225 Bifolchi_2013, Lemey_2009, Chowell_2017, Höhle_2007 Hale_2019, Izakian_2012, Glennon_2020, Que_J_2012
134 Xiong_2016 Weighted multifractal cross-correlation analysis based on Shannon entropy Xiong, Hui; Shang, Pengjian 2016 2016-01-31 PMC N PMC7128505 10.1016/j.cnsns.2015.06.029 geiq55mq 0.552799 Qi_Z_2018, Saw_A_2019, Chang_2011, Zhao_2013, Dai_Q_2012 Tian_2016, Argyroudis_2019, Tao_Y_2020, Pan_J_2008
135 Cho_Y_2005 Rule Generation Using NN and GA for SARS-CoV Cleavage Site Prediction Cho, Yeon-Jin; Kim, Hyeoncheol 2005 2005-01-01 PMC N PMC7122303 10.1007/11553939_111 my2l85bn 0.550363 Cho_Y_2005, Bocharov_2018, Chang_2011, Liou_2013 Fan_K_2005, Shan_2004, Kuo_C_2004
136 Holmes_2017 Solving the master equation for Indels Holmes, Ian H. 2017 2017-05-12 COMM-USE N PMC5427538 28494756.0 10.1186/s12859-017-1665-1 ff6kor0c 0.549123 Saw_A_2019, Chang_2011, Kinene_2016, Redelings_2007, Lee_C_2017 Redelings_2007, Pessia_2015, Hilton_2018
137 Kai_Z_2018 A Novel Efficient Simulated Annealing Algorithm for the RNA Secondary Structure Predicting with Pseudoknots Kai, Zhang; Yulin, Lv 2018 2018-07-06 PMC N PMC7121944 10.1007/978-3-319-95933-7_44 jxgd1yc4 0.548433 Qi_Z_2018, Chang_2011, Lee_C_2017, Saw_A_2019 Kai_Z_2019, Guo_Y_2013
138 Andreatta_2011 NNAlign: A Web-Based Prediction Method Allowing Non-Expert End-User Discovery of Sequence Motifs in Quantitative Peptide Data Andreatta, Massimo; Schafer-Nielsen, Claus; Lund, Ole; Buus, Søren; Nielsen, Morten 2011 2011-11-02 COMM-USE N PMC3206854 22073191.0 10.1371/journal.pone.0026781 dc63kane 0.548161 Liou_2013, Montgomery_2004, Bocharov_2018, Chang_2011, Zheng_2020 Choo_2009, Pessia_2015, Lee_B_2009, Shen_2018
139 Qi_Z_2009 Classification analysis of dual nucleotides using dimension reduction Qi, Zhao-Hui; Wang, Jian-Min; Qi, Xiao-Qin 2009 2009-09-07 PMC N PMC7126582 19481099.0 10.1016/j.jtbi.2009.05.011 5svtmk4a 0.547943 Chang_2011, Qi_Z_2018, Liao_2006, Saw_A_2019, Dai_Q_2012 Zhang_2017, Godeny_1990
140 Kolatkar_2008 C-ME: A 3D Community-Based, Real-Time Collaboration Tool for Scientific Research and Training Kolatkar, Anand; Kennedy, Kevin; Halabuk, Dan; Kunken, Josh; Marrinucci, Dena; Bethel, Kelly; Guzman, Rodney; Huckaby, Tim; Kuhn, Peter 2008 2008-02-20 COMM-USE N PMC2229842 18286178.0 10.1371/journal.pone.0001621 pb1e2w7s 0.547814 Lu_Q_2006, Montgomery_2004, Curcin_2005, Coker_2007 Wang_2006, Montgomery_2004, Molodenskiy_2019, Asbury_2010
141 Watson_2007 DetectiV: visualization, normalization and significance testing for pathogen-detection microarray data Watson, Michael; Dukes, Juliet; Abu-Median, Abu-Bakr; King, Donald P; Britton, Paul 2007 2007-09-14 COMM-USE N PMC2375028 17868443.0 10.1186/gb-2007-8-9-r190 rzzsmuoc 0.547006 Montgomery_2004, Mendizabal-Ruiz_2018, Cheng_2013, Lee_C_2017 Giles_2015, Wong_2007, McLoughlin_2011
142 Chen_2012 PepMapper: A Collaborative Web Tool for Mapping Epitopes from Affinity-Selected Peptides Chen, Wenhan; Guo, William W.; Huang, Yanxin; Ma, Zhiqiang 2012 2012-05-25 COMM-USE N PMC3360666 22701536.0 10.1371/journal.pone.0037869 t3zampk7 0.546928 Lee_C_2017, Chang_2011, Polverino_2017, Qi_Z_2018, Saw_A_2019 Mayrose_2007, Lollier_2011, Irving_2010, Sun_P_2015
143 Yang_2009 Peptide Bioinformatics- Peptide Classification Using Peptide Machines Yang, Zheng Rong 2009 2009-01-01 PMC N PMC7122642 19065810.0 10.1007/978-1-60327-101-1_9 hkvll3xh 0.543829 Sen_D_2018, Liou_2013, Lee_C_2017, Liu_Z_2008 Cai_C_2006, Lee_B_2009, Choo_2009
144 Kim_D_2018 Mapping Oil Spills from Dual-Polarized SAR Images Using an Artificial Neural Network: Application to Oil Spill in the Kerch Strait in November 2007 Kim, Daeseong; Jung, Hyung-Sup 2018 2018-07-11 COMM-USE N PMC6069476 29997367.0 10.3390/s18072237 4ylv92td 0.540221 Dai_Q_2012, Qi_Z_2018, Saw_A_2019, Polverino_2017, Saw_A_2019 Acar_2016, Ng_E_2011, Yuan_2018, You_H_2016
145 Xiao_2005 Using cellular automata images and pseudo amino acid composition to predict protein subcellular location Xiao, X.; Shao, S.; Ding, Y.; Huang, Z.; Chou, K.-C. 2005 2005-07-28 PMC N PMC7087770 16044193.0 10.1007/s00726-005-0225-6 fsh3gsvd 0.539880 Qi_Z_2018, Lee_C_2017, Chang_2011, Liou_2013, Kirillova_2009 Nakai_1992, Choo_2009, van_Dijk_2008, Li_C_2018
146 Carrillo-de-Gea_2016 A Computer-Aided Detection System for Digital Chest Radiographs Carrillo-de-Gea, Juan Manuel; García-Mateos, Ginés; Fernández-Alemán, José Luis; Hernández-Hernández, José Luis 2016 2016-05-31 COMM-USE N PMC5058572 27372536.0 10.1155/2016/8208923 fn929z9y 0.539330 Polverino_2017, Zheng_2020, Bocharov_2018, Liou_2013, Lee_C_2017 Javadi_2006, Hassanien_2020, Shuyue_2006, Upchurch_2018
147 Abbas_2020 Classification of COVID-19 in chest X-ray images using DeTraC deep convolutional neural network Asmaa Abbas; Mohammed Abdelsamea; Mohamed Gaber 2020 2020-04-01 BioRxiv Y 10.1101/2020.03.30.20047456 i5jk0407 0.538982 Polverino_2017, Qi_Z_2018, Lee_C_2017, Dai_Q_2012, Chang_2011 Fu_M_2020, Jin_C_2020, Wang_2020, Zheng_2020
148 Min_J_2013 iEzy-Drug: A Web Server for Identifying the Interaction between Enzymes and Drugs in Cellular Networking Min, Jian-Liang; Xiao, Xuan; Chou, Kuo-Chen 2013 2013-11-26 COMM-USE N PMC3858977 24371828.0 10.1155/2013/701317 jpj1czhg 0.538384 Qi_Z_2018, Lee_C_2017, Chang_2011, Liou_2013, Saw_A_2019 Myllykoski_2017, McDowell_1988, van_der_Linden_2014
149 Fan_Y_2014 iNR-Drug: Predicting the Interaction of Drugs with Nuclear Receptors in Cellular Networking Fan, Yue-Nong; Xiao, Xuan; Min, Jian-Liang; Chou, Kuo-Chen 2014 2014-03-19 COMM-USE N PMC3975431 24651462.0 10.3390/ijms15034915 qdld7hdc 0.537749 Lee_C_2017, Kirillova_2009, Qi_Z_2018, Chang_2011, Leach_2010 Xiao_2013, Tang_2020, Chen_2019
150 Wu_C_2018 A novel model for protein sequence similarity analysis based on spectral radius Wu, Chuanyan; Gao, Rui; De Marinis, Yang; Zhang, Yusen 2018 2018-06-07 PMC N PMC7094169 29524440.0 10.1016/j.jtbi.2018.03.001 f6lfykot 0.536779 Saw_A_2019, Chang_2011, Qi_Z_2018, Dai_Q_2012, Liao_2006 Li_C_2018, Abo-Elkhier_2019, Lee_B_2009, Abd_Elwahaab_2019
151 Lu_H_2009 Multilingual chief complaint classification for syndromic surveillance: An experiment with Chinese chief complaints Lu, Hsin-Min; Chen, Hsinchun; Zeng, Daniel; King, Chwan-Chuen; Shih, Fuh-Yuan; Wu, Tsung-Shu; Hsiao, Jin-Yi 2009 2009-05-31 PMC N PMC7108263 18838292.0 10.1016/j.ijmedinf.2008.08.004 ngow9w7p 0.535691 Murray_2017, Collier_2007, Nelson_2012, Nelson_2012, Knapp_2008 Chapman_2004, Zhang_2009, Xin_H_2019, Marsden-Haug_2007
152 Xu_Y_2013 iSNO-AAPair: incorporating amino acid pairwise coupling into PseAAC for predicting cysteine S-nitrosylation sites in proteins Xu, Yan; Shao, Xiao-Jian; Wu, Ling-Yun; Deng, Nai-Yang; Chou, Kuo-Chen 2013 2013-10-03 COMM-USE N PMC3792191 24109555.0 10.7717/peerj.171 3fwd4guk 0.535680 Polverino_2017, Liu_Z_2008, Chang_2011, Plewczyński_2008, Kirillova_2009 Myllykoski_2017, Buller_2012, Tremblay-Létourneau_2011, Wang_2013
153 Porter_2014 A multivariate CAR model for mismatched lattices Porter, Aaron T.; Oleson, Jacob J. 2014 2014-10-31 PMC N 25457598.0 10.1016/j.sste.2014.08.001 wyrvxocw 0.535171 Bocharov_2018, Bifolchi_2013, Chang_2011, Chowell_2017 Liccardo_2013, Groendyke_2012, Roy_M_2006
154 Aurrecoechea_2017 EuPathDB: the eukaryotic pathogen genomics database resource Aurrecoechea, Cristina; Barreto, Ana; Basenko, Evelina Y.; Brestelli, John; Brunk, Brian P.; Cade, Shon; Crouch, Kathryn; Doherty, Ryan; Falke, Dave; Fischer, Steve; Gajria, Bindu; Harb, Omar S.; Heiges, Mark; Hertz-Fowler, Christiane; Hu, Sufen; Iodice, John; Kissinger, Jessica C.; Lawrence, Cris; Li, Wei; Pinney, Deborah F.; Pulman, Jane A.; Roos, David S.; Shanmugasundram, Achchuthan; Silva-Franco, Fatima; Steinbiss, Sascha; Stoeckert, Christian J.; Spruill, Drew; Wang, Haiming; Warrenfeltz, Susanne; Zheng, Jie 2017 2017-01-04 NONCOMM N PMC5210576 27903906.0 10.1093/nar/gkw1105 t94aufs3 0.534580 UNKNOWN_2018, Cheng_2013, UNKNOWN_2016, O'Leary_2016 McGarvey_2009, Zhang_2007, Snyder_2006, Myler_2008
155 Yu_Z_2010 Proper Distance Metrics for Phylogenetic Analysis Using Complete Genomes without Sequence Alignment Yu, Zu-Guo; Zhan, Xiao-Wen; Han, Guo-Sheng; Wang, Roger W.; Anh, Vo; Chu, Ka Hou 2010 2010-03-18 COMM-USE N PMC2869232 20480005.0 10.3390/ijms11031141 a0pzw26l 0.534232 Chang_2011, Zheng_2008, Saw_A_2019, Qi_Z_2018 Yu_Z_2010, Zhang_2017, Hawkins_2019
156 Kim_K_2007 A LAD-based method for selecting short oligo probes for genotyping applications Kim, Kwangsoo; Ryoo, Hong Seo 2007 2007-06-01 PMC N PMC7080176 10.1007/s00291-007-0089-0 nfxcqsc2 0.533342 Kim_K_2007, Chang_2011, Mendizabal-Ruiz_2018, Pandya_2007 Kim_K_2007, Phillippy_2009, Kutyavin_2006, Tan_J_2009
157 Suresh_2015 RPI-Pred: predicting ncRNA-protein interaction using sequence and structural information Suresh, V.; Liu, Liang; Adjeroh, Donald; Zhou, Xiaobo 2015 2015-02-18 COMM-USE N PMC4330382 25609700.0 10.1093/nar/gkv020 bhtl73z9 0.533340 Bansal_2020, Qi_Z_2018, Kinjo_2012, Dost_2006, Chang_2011 Muppirala_2011, Shen_2018, Yamasaki_2019
158 Yuan_2013 Monitoring Influenza Epidemics in China with Search Query from Baidu Yuan, Qingyu; Nsoesie, Elaine O.; Lv, Benfu; Peng, Geng; Chunara, Rumi; Brownstein, John S. 2013 2013-05-30 COMM-USE N PMC3667820 23750192.0 10.1371/journal.pone.0064323 ctpgylnr 0.532631 Lee_C_2017, Saw_A_2019, Nelson_2012, Nelson_2012, Qi_Z_2018 Liang_2018, Chen_2019, Zhan_2020
159 Abd_Elwahaab_2019 A Statistical Similarity/Dissimilarity Analysis of Protein Sequences Based on a Novel Group Representative Vector Abd Elwahaab, Marwa A.; Abo-Elkhier, Mervat M.; Abo el Maaty, Moheb I. 2019 2019-05-08 COMM-USE N PMC6530227 31205946.0 10.1155/2019/8702968 9t3kneoo 0.531950 Chang_2011, Qi_Z_2018, Saw_A_2019, Zheng_2008, Liu_L_2012 Han_L_2005, Wei_D_2012, Abo-Elkhier_2019, Wu_C_2018
160 Kim_K_2007 Selecting Genotyping Oligo Probes Via Logical Analysis of Data Kim, Kwangsoo; Ryoo, Hong Seo 2007 2007-01-01 PMC N PMC7122177 10.1007/978-3-540-72665-4_8 9rx4jlw8 0.530399 Kim_K_2007, Cheng_2013, Yu_H_2007, Chang_2011 Kim_K_2007, Kutyavin_2006, Phillippy_2009, Tan_J_2009
161 Sperschneider_2010 DotKnot: pseudoknot prediction using the probability dot plot under a refined energy model Sperschneider, Jana; Datta, Amitava 2010 2010-01-31 NONCOMM N PMC2853144 20123730.0 10.1093/nar/gkq021 q26f8pv4 0.529976 Lee_C_2017, Dawson_2007, Dai_Q_2012, Song_2005 Sperschneider_2012, Reeder_2007, Kai_Z_2019
162 Xie_G_2011 Three 3D graphical representations of DNA primary sequences based on the classifications of DNA bases and their applications Xie, Guosen; Mo, Zhongxi 2011 2011-01-21 PMC N PMC7126940 20969878.0 10.1016/j.jtbi.2010.10.018 5cxaiw4k 0.529506 Chang_2011, Liao_2006, Qi_Z_2018, Zheng_2008, Saw_A_2019 Yu_J_2009, Otsuka_1999, Zou_S_2014, Nandy_2009
163 Bakker_2018 Dynamic graphs, community detection, and Riemannian geometry Bakker, Craig; Halappanavar, Mahantesh; Visweswara Sathanur, Arun 2018 2018-03-29 COMM-USE N PMC6214282 30839776.0 10.1007/s41109-018-0059-2 ear9cyri 0.528209 Bocharov_2018, Qi_Z_2018, Zheng_2020, Liou_2013, Polverino_2017 Pacheco_2017, Coelho_2008, Han_X_2014, Groendyke_2012
164 Ragonnet-Cronin_2013 Automated analysis of phylogenetic clusters Ragonnet-Cronin, Manon; Hodcroft, Emma; Hué, Stéphane; Fearnhill, Esther; Delpech, Valerie; Brown, Andrew J Leigh; Lycett, Samantha 2013 2013-11-06 None N PMC4228337 24191891.0 10.1186/1471-2105-14-317 qi630tpo 0.527651 Chang_2011, Zheng_2008, Cheng_2013, Saw_A_2019, Lee_C_2017 Tibayrenc_2015, Velsko_2014, Duarte_2009
165 Pourhomayoun_2020 Predicting Mortality Risk in Patients with COVID-19 Using Artificial Intelligence to Help Medical Decision-Making Mohammad Pourhomayoun; Mahdi Shakibi 2020 2020-04-01 BioRxiv Y 10.1101/2020.03.30.20047308 x70501t3 0.527651 Zheng_2020, Chen_2010, Bocharov_2018, Saw_A_2019, Amirov_2007 Andre_2020, Yan_L_2020, AlMoammar_2018, Sarkar_2020
166 Janies_2012 Analysis and visualization of H7 influenza using genomic, evolutionary and geographic information in a modular web service Janies, Daniel A.; Pomeroy, Laura W.; Aaronson, Jacob M.; Handelman, Samuel; Hardman, Jori; Kawalec, Kevin; Bitterman, Thomas; Wheeler, Ward C. 2012 2012-05-21 PMC N PMC7162197 10.1111/j.1096-0031.2012.00401.x ba4t4kkd 0.526819 UNKNOWN_2010, Lee_C_2017, Chang_2011, Nelson_2012, Nelson_2012
167 Robson_2016 Data-mining to build a knowledge representation store for clinical decision support. Studies on curation and validation based on machine performance in multiple choice medical licensing examinations Robson, Barry; Boray, Srinidhi 2016 2016-06-01 PMC N PMC7094475 27089305.0 10.1016/j.compbiomed.2016.02.010 uwbmox8a 0.525990 Mooney_2013, Lipsitch_2014, Coker_2007, Dentico_2005, Nelson_2012 McCrae_2008, Yu_A_2011, Joshi_2020, Nakai_1992
168 Tao_J_2004 A probabilistic approach to incorporating domain knowledge for closed-room people monitoring Tao, Ji; Tan, Yap-Peng 2004 2004-11-30 PMC N PMC7126007 10.1016/j.image.2004.07.001 dslwklo4 0.525204 Polverino_2017, Bocharov_2018, Qi_Z_2018, Chang_2011 Tao_J_2005, Guo_S_2020, Thi_T_2014, Capotorti_2006
169 Nguyen_2019 GraphDTA: Predicting drug–target binding affinity with graph neural networks Thin Nguyen; Hang Le; Thomas P. Quinn; Thuc Le; Svetha Venkatesh 2019 2019-06-27 BioRxiv N 10.1101/684662 zult69f2 0.524732 Zheng_2020, Bocharov_2018, Leach_2010, Lee_C_2017
170 Matsuzaw_2011 KBDeX: A Platform for Exploring Discourse in Collaborative Learning Matsuzaw, Yoshiaki; Oshima, Jun; Oshima, Ritsuko; Niihara, Yusuke; Sakai, Sanshiro 2011 2011-12-31 PMC N 10.1016/j.sbspro.2011.10.576 e2coy5ms 0.522318 Coker_2007, Knapp_2008, Mooney_2013, Walsh_2018, Dentico_2005 Pearson_2006, van_Aalst_2009, Ojima_2006, Pewnim_2011
171 Liu_W_2015 State-of-the-art methods for inverse design of an enclosed environment Liu, Wei; Zhang, Tengfei; Xue, Yu; Zhai, Zhiqiang (John); Wang, Jihong; Wei, Yun; Chen, Qingyan 2015 2015-09-30 PMC N PMC7127361 10.1016/j.buildenv.2015.02.041 vtt1k6ph 0.521904 Bocharov_2018, Liou_2013, Zheng_2020, Mendizabal-Ruiz_2018 Yuan_2014, Chen_2013, Zhu_S_2010, Liu_W_2012
172 Altschul_1991 Amino acid substitution matrices from an information theoretic perspective Altschul, Stephen F. 1991 1991-06-05 PMC N PMC7130686 2051488.0 10.1016/0022-2836(91)90193-a 9zfct1yx 0.521087 Lee_C_2017, Qi_Z_2018, Saw_A_2019, Chang_2011, Liao_2006 Wang_2013, Neer_1987
173 Xiao_2013 iGPCR-Drug: A Web Server for Predicting Interaction between GPCRs and Drugs in Cellular Networking Xiao, Xuan; Min, Jian-Liang; Wang, Pu; Chou, Kuo-Chen 2013 2013-08-27 COMM-USE N PMC3754978 24015221.0 10.1371/journal.pone.0072234 kt6wqvam 0.520719 Lee_C_2017, Qi_Z_2018, Chang_2011, Liou_2013, Bocharov_2018 Wang_2013, Fan_Y_2014, Min_J_2013
174 Jin_C_2020 Development and Evaluation of an AI System for COVID-19 Cheng Jin; Weixiang Chen; Yukun Cao; Zhanwei Xu; Xin Zhang; Lei Deng; Chuansheng Zheng; Jie Zhou; Heshui Shi; Jianjiang Feng 2020 2020-03-23 BioRxiv Y 10.1101/2020.03.20.20039834 k1lg8c7q 0.516936 Polverino_2017, Lee_C_2017, Saw_A_2019, Chang_2011, Nelson_2012 Fu_M_2020, Zheng_2020, Wang_2020
175 Roy_R_2007 3.36 Application of Multivalent Mannosylated Dendrimers in Glycobiology Roy, R.; Touaibia, M. 2007 2007-12-31 PMC N PMC7152399 10.1016/b978-044451967-2/00112-4 zj1fvery 0.516543 Wanka_2013, Cook_2013
176 Englund_2011 Viral Infections in Immunocompromised Patients Englund, Janet; Feuchtinger, Tobias; Ljungman, Per 2011 2011-01-31 None N PMC3030455 21195305.0 10.1016/j.bbmt.2010.11.008 63ohetih 0.516543 Chavanet_2008, Yu_W_2004
177 Mayrose_2007 Pepitope: epitope mapping from affinity-selected peptides Mayrose, Itay; Penn, Osnat; Erez, Elana; Rubinstein, Nimrod D.; Shlomi, Tomer; Freund, Natalia Tarnovitski; Bublil, Erez M.; Ruppin, Eytan; Sharan, Roded; Gershoni, Jonathan M.; Martz, Eric; Pupko, Tal 2007 2007-12-01 PMC N PMC7110138 17977889.0 10.1093/bioinformatics/btm493 7rs4jtfh 0.516486 Qi_Z_2018, Dai_Q_2012, Montgomery_2004, Chang_2011, Lee_C_2017 Irving_2010, Li_S_2016, Niesters_1987, Yu_M_2000
178 Shahid_2009 Comparison of distance measures in spatial analytical modeling for health service planning Shahid, Rizwan; Bertazzon, Stefania; Knudtson, Merril L; Ghali, William A 2009 2009-11-06 COMM-USE N PMC2781002 19895692.0 10.1186/1472-6963-9-200 eabho73n 0.515992 Bifolchi_2013, Chang_2011, So_M_2008, Chowell_2017 STRESMAN_2014, Hellmich_2017, Falcón-Lezama_2017
179 Ming_2014 Multistep-Ahead Air Passengers Traffic Prediction with Hybrid ARIMA-SVMs Models Ming, Wei; Bao, Yukun; Hu, Zhongyi; Xiong, Tao 2014 2014-02-27 COMM-USE N PMC3958729 24723814.0 10.1155/2014/567246 4mad9xws 0.514367 Bocharov_2018, Chowell_2017, Saw_A_2019, Chang_2011, Mendizabal-Ruiz_2018 Xie_G_2020, Yang_2018
180 Wilson_2003 Application of data mining techniques in pharmacovigilance Wilson, Andrew M; Thabane, Lehana; Holbrook, Anne 2003 2003-09-30 PMC N PMC1884444 14748811.0 10.1046/j.1365-2125.2003.01968.x 183n1lrf 0.514177 Nelson_2012, Nelson_2012, Lipsitch_2014, Collier_2007, Curcin_2005 Bai_J_2016, Vecoso_2019, Sun_P_2020
181 Heo_L_2020 Modeling of Severe Acute Respiratory Syndrome Coronavirus 2 (SARS-CoV-2) Proteins by Machine Learning and Physics-Based Refinement Lim Heo; Michael Feig 2020 2020-03-28 BioRxiv Y 10.1101/2020.03.25.008904 9qv11m4f 0.512731 Saw_A_2019, Lee_C_2017, Chang_2011, Dai_Q_2012, Qi_Z_2018 Rockx_2020, Tan_Y_2020, Park_2020
182 Liao_2006 Coronavirus phylogeny based on triplets of nucleic acids bases Liao, Bo; Liu, Yanshu; Li, Renfa; Zhu, Wen 2006 2006-04-15 PMC N PMC7094651 10.1016/j.cplett.2006.01.030 zocunore 0.512576 Qi_Z_2018, Chang_2011, Saw_A_2019, Dai_Q_2012 Lapps_1987, Jouvenne_1992, Boursnell_1984
183 Zhang_2013 Enhancement of accuracy and efficiency for RNA secondary structure prediction by sequence segmentation and MapReduce Zhang, Boyu; Yehdego, Daniel T; Johnson, Kyle L; Leung, Ming-Ying; Taufer, Michela 2013 2013-11-08 COMM-USE N PMC3952952 24564983.0 10.1186/1472-6807-13-s1-s3 p1i7bx94 0.511824 Chang_2011, Saw_A_2019, Lee_C_2017, Dai_Q_2012, Qi_Z_2018 Suresh_2015, Yamasaki_2019, Low_J_2010, Sperschneider_2012
184 Asbury_2010 Genome3D: A viewer-model framework for integrating and visualizing multi-scale epigenomic information within a three-dimensional genome Asbury, Thomas M; Mitman, Matt; Tang, Jijun; Zheng, W Jim 2010 2010-09-02 COMM-USE N PMC2941692 20813045.0 10.1186/1471-2105-11-444 5pvln91x 0.510798 Montgomery_2004, Bocharov_2018, Gamermann_2014, Chang_2011, Sen_D_2018 Montgomery_2004, Zhang_2017, Aziz_2012
185 Banakar_2016 An intelligent device for diagnosing avian diseases: Newcastle, infectious bronchitis, avian influenza Banakar, Ahmad; Sadeghi, Mohammad; Shushtari, Abdolhamid 2016 2016-09-30 PMC N PMC7125684 10.1016/j.compag.2016.08.006 6vuvhf8v 0.509725 Saw_A_2019, Lee_C_2017, Qi_Z_2018, Polverino_2017, Chang_2011 Balestrin_2014, Ren_X_2008, Alsultan_2019
186 Wang_2008 WSE, a new sequence distance measure based on word frequencies Wang, Jun; Zheng, Xiaoqi 2008 2008-09-30 PMC N 10.1016/j.mbs.2008.06.001 d6wcgkln 0.509588 Chang_2011, Qi_Z_2018, Zheng_2009, Zheng_2008, Saw_A_2019 Dai_Q_2013, Wu_C_2018, Gu_W_2004
187 Zhang_2007 Estimating residue evolutionary conservation by introducing von Neumann entropy and a novel gap-treating approach Zhang, S.-W.; Zhang, Y.-L.; Pan, Q.; Cheng, Y.-M.; Chou, K.-C. 2007 2007-08-21 PMC N PMC7088136 17710364.0 10.1007/s00726-007-0586-0 7bh8222u 0.508197 Qi_Z_2018, Chang_2011, Dai_Q_2012, Feng_2010 Pessia_2015, Altschul_1991, Hilton_2018
188 Shang_2020 CHEER: hierarCHical taxonomic classification for viral mEtagEnomic data via deep leaRning Jiayu Shang; Yanni Sun 2020 2020-03-27 BioRxiv N 10.1101/2020.03.26.009001 pd0cmefo 0.505952 Chang_2011, Lee_C_2017, Cheng_2013, Sen_D_2018, Montgomery_2004 Mock_2019, Yadav_2013, Lopez-Rincon_2020, Zhang_2017
189 Sandhu_2015 An intelligent system for predicting and preventing MERS-CoV infection outbreak Sandhu, Rajinder; Sood, Sandeep K.; Kaur, Gurpreet 2015 2015-07-08 PMC N PMC7089482 10.1007/s11227-015-1474-0 j5uufd63 0.505385 Coker_2007, Mwabu_2008, Mack_2007, Wei_B_2011, Zhou_2020 AlMoammar_2018, Eifan_2017, Al-Turaiki_2016
190 Nakai_1992 A knowledge base for predicting protein localization sites in eukaryotic cells Nakai, Kenta; Kanehisa, Minoru 1992 1992-12-31 PMC N PMC7134799 1478671.0 10.1016/s0888-7543(05)80111-9 98oo0bkl 0.505385 Qi_Z_2018, Chang_2011, Saw_A_2019, Lee_C_2017, Dai_Q_2012 van_Dijk_2008, Lee_B_2009, Choo_2009, Scott_2011
191 Fenga_2020 CoViD19 Meta heuristic optimization based forecast method on time dependent bootstrapped data Livio Fenga; Carlo Del Castello 2020 2020-04-07 BioRxiv Y 10.1101/2020.04.02.20050153 j1p4nmsa 0.501715 Bocharov_2018, Dai_Q_2012, Chang_2011, Qi_Z_2018, Polverino_2017 Chong_2020, Chernyshev_2020, Lega_2016, Hackl_2020
192 Zhang_2005 PRED(BALB/c): a system for the prediction of peptide binding to H2(d) molecules, a haplotype of the BALB/c mouse Zhang, Guang Lan; Srinivasan, Kellathur N.; Veeramani, Anitha; August, J. Thomas; Brusic, Vladimir 2005 2005-07-01 PMC N PMC1160239 15980450.0 10.1093/nar/gki479 y0wf456f 0.500880 Saw_A_2019, Qi_Z_2018, Chang_2011, Feng_2010, Lee_C_2017 Hou_Y_2012
193 Seemann_2008 Unifying evolutionary and thermodynamic information for RNA folding of multiple alignments Seemann, Stefan E.; Gorodkin, Jan; Backofen, Rolf 2008 2008-10-04 None N PMC2582601 18836192.0 10.1093/nar/gkn544 wtvfow2f 0.500571 Chang_2011, Saw_A_2019, Lee_C_2017, Qi_Z_2018, Dai_Q_2012 Fricke_2019
194 Jung_2017 Ontology-Based Approach to Social Data Sentiment Analysis: Detection of Adolescent Depression Signals Jung, Hyesil; Park, Hyeoun-Ae; Song, Tae-Min 2017 2017-07-24 PMC N PMC5547245 28739560.0 10.2196/jmir.7452 p7ga4h70 0.498180 Lipsitch_2014, Mooney_2013, Nelson_2012, Nelson_2012 Hu_G_2019, Fung_2015, Zyoud_2018
195 Pfab_2020 DeepTracer: Predicting Backbone Atomic Structure from High Resolution Cryo-EM Density Maps of Protein Complexes Jonas Pfab; Dong Si 2020 2020-02-13 BioRxiv N 10.1101/2020.02.12.946772 er6lz09f 0.497673 Qi_Z_2018, Chang_2011, Saw_A_2019, Liao_2006, Dai_Q_2012 Zhong_2020, Subramaniam_2016, Yang_2020
196 Dwith_Chenna_2018 Free-Form Deformation Approach for Registration of Visible and Infrared Facial Images in Fever Screening † Dwith Chenna, Yedukondala Narendra; Ghassemi, Pejhman; Pfefer, T. Joshua; Casamento, Jon; Wang, Quanzeng 2018 2018-01-04 COMM-USE N PMC5795541 29300320.0 10.3390/s18010125 uqvjx98j 0.496957 Polverino_2017, Chang_2011, Dai_Q_2012, Kylberg_2009, Lee_C_2017 Ghassemi_2018, Budzan_2013, Sun_G_2017, Lahiri_2012
197 Zhang_2009 Automatic online news monitoring and classification for syndromic surveillance Zhang, Yulei; Dang, Yan; Chen, Hsinchun; Thurmond, Mark; Larson, Cathy 2009 2009-11-30 PMC N PMC7114309 10.1016/j.dss.2009.04.016 r0lduvs1 0.496403 Rodier_2007, Coker_2007, Griffiths_2010, Wei_B_2011, Fielding_2014 Glennon_2020, Paterson_2013, Lu_H_2009, Fast_2017
198 Freifeld_2008 HealthMap: Global Infectious Disease Monitoring through Automated Classification and Visualization of Internet Media Reports Freifeld, Clark C.; Mandl, Kenneth D.; Reis, Ben Y.; Brownstein, John S. 2008 2008-04-30 None N PMC2274789 18096908.0 10.1197/jamia.m2544 1lgi1e60 0.494804 MacIntyre_2020, Lipsitch_2014, Curcin_2005, Murray_2017, Rodier_2007 Keller_2009, Keller_2009, Zhang_2009
199 Adetiba_2018 Alignment-Free Z-Curve Genomic Cepstral Coefficients and Machine Learning for Classification of Viruses Adetiba, Emmanuel; Olugbara, Oludayo O.; Taiwo, Tunmike B.; Adebiyi, Marion O.; Badejo, Joke A.; Akanle, Matthew B.; Matthews, Victor O. 2018 2018-03-07 PMC N PMC7120486 10.1007/978-3-319-78723-7_25 ddu6yl8r 0.490828 Lee_C_2017, Liou_2013, Chang_2011, Saw_A_2019, Liu_L_2012 Lopez-Rincon_2020, Mock_2019, AlMoammar_2018, Ozturk_2020
200 Wang_2014 Identification of indoor contaminant source location by a single concentration sensor Wang, Lin-Lin; You, Xue-Yi 2014 2014-07-18 PMC N PMC7089341 10.1007/s11869-014-0280-9 lpe49hcj 0.490046 Polverino_2017, Chang_2011, Feng_2010, Qi_Z_2018 Cai_H_2014, Bastani_2012, Feng_2019, Zulkifli_2018
201 Barbarini_2011 Prediction of Peptide Reactivity with Human IVIg through a Knowledge-Based Approach Barbarini, Nicola; Tiengo, Alessandra; Bellazzi, Riccardo 2011 2011-08-24 COMM-USE N PMC3160895 21887285.0 10.1371/journal.pone.0023616 9gozwdng 0.489671 Polverino_2017, Qi_Z_2018, Chang_2011, Bocharov_2018, Saw_A_2019 Sollner_2008, Lollier_2011, Irving_2010, Hua_R_2013
202 He_X_2020 Sample-Efficient Deep Learning for COVID-19 Diagnosis Based on CT Scans Xuehai He; Xingyi Yang; Shanghang Zhang; Jinyu Zhao; Yichen Zhang; Eric Xing; Pengtao Xie 2020 2020-04-17 BioRxiv Y 10.1101/2020.04.13.20063941 l3f469ht 0.489040 Zheng_2020, Bocharov_2018, Polverino_2017, Nelson_2012, Nelson_2012
203 Yang_2017 Chapter 7 China Infectious Diseases Automated-Alert and Response System (CIDARS) Yang, Weizhong; Li, Zhongjie; Lan, Yajia; Ma, Jiaqi; Jin, Lianmei; Lai, Shengjie; Liao, Yilan; Lv, Wei; Sun, Qiao; Wang, Jinfeng 2017 2017-12-31 PMC N PMC7149749 10.1016/b978-0-12-812343-0.00007-2 7khwthux 0.488827 Murray_2017, Lipsitch_2014, Rodier_2007, Polverino_2017, UNKNOWN_2010 Liang_2004, Corman_2019, Chong_2015, Al-Tawfiq_2014
204 Cheng_2010 Manifold construction based on local distance invariance Cheng, Wei-Chen; Liou, Cheng-Yuan 2010 2010-02-11 PMC N PMC7091362 10.1007/s12293-009-0030-y 3m1zet9t 0.488827 Polverino_2017, Liao_2006, Chang_2011, Qi_Z_2011 Bakker_2018, Liu_K_2007, Saad_2005, Feng_2019
205 Sareen_2016 IoT-based cloud framework to control Ebola virus outbreak Sareen, Sanjay; Sood, Sandeep K.; Gupta, Sunil Kumar 2016 2016-10-20 PMC N PMC7091278 10.1007/s12652-016-0427-7 2se42vec 0.488695 UNKNOWN_2010, Polverino_2017, Collier_2007, Mwabu_2008, Zhou_2020 Sood_2017, Zhu_H_2020, Huang_2013, Lwin_2017
206 Singh_2008 Comparative phyloinformatics of virus genes at micro and macro levels in a distributed computing environment Singh, Dadabhai T; Trehan, Rahul; Schmidt, Bertil; Bretschneider, Timo 2008 2008-02-13 COMM-USE N PMC2259424 18315855.0 10.1186/1471-2105-9-s1-s23 uo1d8xka 0.488001 Chang_2011, Bocharov_2018, Sen_D_2018, Gamermann_2014, Lee_C_2017 Gutiérrez_2013, Tibayrenc_2015, Lachheb_2019
207 Ozturk_2020 Classification of Coronavirus Images using Shrunken Features Saban Ozturk; Umut Ozkaya; Mucahid Barstugan 2020 2020-04-06 BioRxiv Y 10.1101/2020.04.03.20048868 2l1zw19o 0.485972 Polverino_2017, Qi_Z_2018, Chang_2011, Lee_C_2017, Mendizabal-Ruiz_2018 Wang_2020, Song_2020
208 Jia_J_2016 iPPBS-Opt: A Sequence-Based Ensemble Classifier for Identifying Protein-Protein Binding Sites by Optimizing Imbalanced Training Datasets Jia, Jianhua; Liu, Zi; Xiao, Xuan; Liu, Bingxiang; Chou, Kuo-Chen 2016 2016-01-19 COMM-USE N PMC6274413 26797600.0 10.3390/molecules21010095 c3ewuebx 0.485553 Bocharov_2018, Polverino_2017, Qi_Z_2018, Zheng_2020, Chang_2011 Xiao_2017, Zhang_2018, Zamanzadeh_2017
209 Tapinos_2019 The Utility of Data Transformation for Alignment, De Novo Assembly and Classification of Short Read Virus Sequences Tapinos, Avraam; Constantinides, Bede; Phan, My V. T.; Kouchaki, Samaneh; Cotten, Matthew; Robertson, David L. 2019 2019-04-26 COMM-USE N PMC6563281 31035503.0 10.3390/v11050394 y5xsf3ij 0.483866 Chang_2011, Deng_2015, Montgomery_2004, Liou_2013, Dai_Q_2012 Zhang_2017, Pessia_2015, Wang_2010
210 Lopes_2017 Computational Comparison and Visualization of Viruses in the Perspective of Clinical Information Lopes, António M.; Machado, J. A. Tenreiro; Galhano, Alexandra M. 2017 2017-04-08 PMC N PMC7090701 28391493.0 10.1007/s12539-017-0229-4 zbz88pqx 0.483861 Bocharov_2018, Liou_2013, Sen_D_2018, Mendizabal-Ruiz_2018 John_2019, Davidson_2019, Heydari_2020
211 Stubblefield_2020 Cardiac or Infectious? Transfer Learning with Chest X-Rays for ER Patient Classification Jonathan Stubblefield; Mitchell Hervert; Jason Causey; Jake Qualls; Wei Dong; Lingrui Cai; Jennifer Fowler; Emily Bellis; Karl Walker; Jason H. Moore; Sara Nehring; Xiuzhen Huang 2020 2020-04-15 BioRxiv Y 10.1101/2020.04.11.20062091 w8joc5ye 0.483493 Polverino_2017, Bocharov_2018, Nelson_2012, Nelson_2012, Kurc_2006 Fu_M_2020, Zhou_2020, Abbas_2020, Wang_2020
212 Saad_2005 Orientation determination by wavelets matching for 3D reconstruction of very noisy electron microscopic virus images Saad, Ali Samir 2005 2005-03-02 COMM-USE N PMC555555 15743519.0 10.1186/1472-6807-5-5 89xnnvuv 0.482558 Polverino_2017, Qi_Z_2018, Chang_2011, Dai_Q_2012, Feng_2010 Acar_2016, Chichón_2012, Laine_2015, Rochat_2012
213 Abdulrahman_2020 SimCOVID: An Open-Source Simulink-Based Program for Simulating the COVID-19 Epidemic Ismael Khorshed Abdulrahman 2020 2020-04-17 BioRxiv Y 10.1101/2020.04.13.20063354 nexylnv4 0.482269 Höhle_2007, Bifolchi_2013, Saw_A_2019, Renna_2020, Bocharov_2018
214 Cai_Y_2019 Temporal event searches based on event maps and relationships Cai, Yi; Xie, Haoran; Lau, Raymond Y.K.; Li, Qing; Wong, Tak-Lam; Wang, Fu Lee 2019 2019-12-31 PMC N PMC7105191 10.1016/j.asoc.2019.105750 4wnoa4l7 0.482072 Polverino_2017, Chang_2011, Qi_Z_2018, Bocharov_2018 Tikhomirov_2018, Zou_Z_2013, Keller_2009, Waagmeester_2020
215 Reeder_2006 Beyond Mfold: Recent advances in RNA bioinformatics Reeder, Jens; Höchsmann, Matthias; Rehmsmeier, Marc; Voss, Björn; Giegerich, Robert 2006 2006-06-25 PMC N PMC7125698 16530285.0 10.1016/j.jbiotec.2006.01.034 qgit5qqo 0.481275 Montgomery_2004, Liu_Z_2008, Cheng_2013, Dawson_2007 Yamasaki_2019, Järvelin_2016, Ding_2012, Xia_H_2015
216 Quintana_1998 Optimization of phosphorus localization by EFTEM of nucleic acid containing structures Quintana, C.; Marco, S.; Bonnet, N.; Risco, C.; Gutiérrez, M.L.; Guerrero, A.; Carrascosa, J.L. 1998 1998-08-31 PMC N PMC7135716 9744088.0 10.1016/s0968-4328(98)00011-0 wsgb5s6z 0.480682 Polverino_2017, Kylberg_2009, Qi_Z_2018, Liao_2006, Dai_Q_2012 Effantin_2016, Zhang_2015, Dea_S_1989
217 Liu_W_2006 Quantitative prediction of mouse class I MHC peptide binding affinity using support vector machine regression (SVR) models Liu, Wen; Meng, Xiangshan; Xu, Qiqi; Flower, Darren R; Li, Tongbin 2006 2006-03-31 COMM-USE N PMC1513606 16579851.0 10.1186/1471-2105-7-182 ltf82dh3 0.479609 Dai_Q_2012, Saw_A_2019, Chang_2011, Sen_D_2018, Qi_Z_2018 Wang_2012, Soam_2010
218 Zhou_2018 Early detection of dynamic harmful cascades in large-scale networks Zhou, Chuan; Lu, Wei-Xue; Zhang, Jingzun; Li, Lei; Hu, Yue; Guo, Li 2018 2018-09-30 PMC N PMC7102699 10.1016/j.jocs.2017.10.014 5wtrij3m 0.479609 Bocharov_2018, Polverino_2017, Qi_Z_2018, Chang_2011, Chowell_2017 Kan_J_2017, Zhan_2018, Shi_T_2019, Han_X_2014
219 Davis_2020 Vorpal: A novel RNA virus feature-extraction algorithm demonstrated through interpretable genotype-to-phenotype linear models Phillip Davis; John Bagnoli; David Yarmosh; Alan Shteyman; Lance Presser; Sharon Altmann; Shelton Bradrick; Joseph A. Russell 2020 2020-03-02 BioRxiv N 10.1101/2020.02.28.969782 48mtdwuv 0.479282 Chang_2011, Lee_C_2017, Dai_Q_2012, Qi_Z_2018, Liou_2013 Ren_X_2008, Niemeyer_2018, Zhang_2017, Lachheb_2019
220 Sen_D_2018 Graphical representation methods: How well do they discriminate between homologous gene sequences? Sen, Dwaipayan; Roy, Proyasha; Nandy, Ashesh; Basak, Subhash C.; Das, Sukhen 2018 2018-09-24 PMC N PMC7116999 10.1016/j.chemphys.2018.07.031 clagd6rh 0.479219 Bocharov_2018, Chang_2011, Gamermann_2014, Liu_Z_2008 Otsuka_1999, Liao_2006, Qi_Z_2018
221 He_Z_2010 Predicting Drug-Target Interaction Networks Based on Functional Groups and Biological Features He, Zhisong; Zhang, Jian; Shi, Xiao-He; Hu, Le-Le; Kong, Xiangyin; Cai, Yu-Dong; Chou, Kuo-Chen 2010 2010-03-11 COMM-USE N PMC2836373 20300175.0 10.1371/journal.pone.0009603 ni6iyzdn 0.478814 Saw_A_2019, Qi_Z_2018, Chang_2011, Lee_C_2017, Dai_Q_2012 Wang_2018, Zhou_2010, Chiba_2012
222 Huang_2020 Multiple-Input Deep Convolutional Neural Network Model for COVID-19 Forecasting in China Chiou-Jye Huang; Yung-Hsiang Chen; Yuxuan Ma; Ping-Huan Kuo 2020 2020-03-27 BioRxiv Y 10.1101/2020.03.23.20041608 yw81pkrq 0.478484 Li_C_2018, Saw_A_2019, Polverino_2017, Chang_2011, Zheng_2009 Li_M_2020, Mock_2019
223 Sidorov_2009 SNAD: sequence name annotation-based designer Sidorov, Igor A; Reshetov, Denis A; Gorbalenya, Alexander E 2009 2009-08-14 COMM-USE N PMC2739203 19682364.0 10.1186/1471-2105-10-251 s1gwh4qg 0.478050 Montgomery_2004, Cheng_2013, Wang_2006, Lu_Q_2006, UNKNOWN_2018 Pessia_2015, Choo_2009, Schäffer_2019
224 Chang_2011 Phylogenetic Analysis of Protein Sequences Based on Distribution of Length About Common Substring Chang, Guisong; Wang, Tianming 2011 2011-03-10 PMC N PMC7088358 21461804.0 10.1007/s10930-011-9318-0 le7v89mp 0.477702 Chang_2011, Zheng_2008, Lee_C_2017, Qi_Z_2018 Stephensen_1999, Yu_Z_2010, Zhang_2017
225 Peters_2007 Integrating epitope data into the emerging web of biomedical knowledge resources Peters, Bjoern; Sette, Alessandro 2007 2007-01-01 PMC N PMC7097317 17479127.0 10.1038/nri2092 vvlsqy36 0.475792 UNKNOWN_2004, Gupta_2009, Brister_2015, Zhou_2020 Jin_J_2018, Khan_2006, Lon_J_2020, Lollier_2011
226 Xiang_2020 VPTMdb: a viral post-translational modification database Yujia Xiang; Quan Zou; Lilin Zhao 2020 2020-04-02 BioRxiv N 10.1101/2020.04.01.019562 kl99afiu 0.475387 Brister_2015, Cheng_2013, Wang_2006, Lee_C_2017 Wimmer_2015
227 Tan_T_2007 A novel cognitive interpretation of breast cancer thermography with complementary learning fuzzy neural memory structure Tan, T.Z.; Quek, C.; Ng, G.S.; Ng, E.Y.K. 2007 2007-10-31 PMC N PMC7126614 10.1016/j.eswa.2006.06.012 nray6171 0.475171 Coker_2007, Bocharov_2018, Mwabu_2008, Shaw_2012, Ropeik_2004 Bandalakunta_Gururajarao_2019, Liu_Y_2020, Lahiri_2012, Zeeneldin_2018
228 Scott_2011 NoD: a Nucleolar localization sequence detector for eukaryotic and viral proteins Scott, Michelle S; Troshin, Peter V; Barton, Geoffrey J 2011 2011-08-03 COMM-USE N PMC3166288 21812952.0 10.1186/1471-2105-12-317 59yvbupx 0.474915 Lee_C_2017, Chang_2011, Qi_Z_2018, Cheng_2013, Wang_2006 Zhang_2015, Fulcher_2011, Wulan_2015
229 Mei_H_2004 Identification of encoding proteins related to SARS-CoV Mei, Hu; Sun, Lili; Zhou, Yuan; Xiong, Qing; Li, Zhiliang 2004 2004-01-01 PMC N PMC7089014 10.1360/03wb0198 d8onhd04 0.473877 Abou-Hamdan_2018, Choudhury_2011, David_2013, Largo_2016 Niemeyer_2018, Liu_M_2006, Zeng_2004, Frick_2020
230 Janssen_2015 The RNA shapes studio Janssen, Stefan; Giegerich, Robert 2015 2015-02-01 COMM-USE N PMC4308662 25273103.0 10.1093/bioinformatics/btu649 5igorndt 0.472620 Montgomery_2004, Wang_2006, Polverino_2017, Lee_C_2017, Chang_2011 Gao_J_2010, Reeder_2007, Low_J_2010, Sperschneider_2012
231 Ai_Y_2013 GenomeFingerprinter: The Genome Fingerprint and the Universal Genome Fingerprint Analysis for Systematic Comparative Genomics Ai, Yuncan; Ai, Hannan; Meng, Fanmei; Zhao, Lei 2013 2013-10-29 COMM-USE N PMC3812135 24205026.0 10.1371/journal.pone.0077912 b8jlvkg7 0.467733 Chang_2011, Dai_Q_2012, Cheng_2013, Zheng_2008, Qi_Z_2018 Cheng_2013, Phillippy_2009, Walker_2015
232 Moshiri_2020 ViralMSA: Massively scalable reference-guided multiple sequence alignment of viral genomes Niema Moshiri 2020 2020-04-21 BioRxiv N 10.1101/2020.04.20.052068 l9a7upui 0.467714 Cheng_2013, Montgomery_2004, Chang_2011, Lee_C_2017
233 Pérez-Montoto_2009 Scoring function for DNA–drug docking of anticancer and antiparasitic compounds based on spectral moments of 2D lattice graphs for molecular dynamics trajectories Pérez-Montoto, Lázaro G.; Santana, Lourdes; González-Díaz, Humberto 2009 2009-11-30 PMC N PMC7127518 19604606.0 10.1016/j.ejmech.2009.06.011 58p5b2vw 0.467652 Saw_A_2019, Qi_Z_2018, Chang_2011, Zheng_2009, Liao_2006 Wang_2013, González-Díaz_2009, Grazioso_2012, Pérez-Montoto_2009
234 Wang_2010 Method of regulatory network that can explore protein regulations for disease classification Wang, Hong Qiang; Zhu, Hai Long; Cho, William C.S.; Yip, Timothy T.C.; Ngan, Roger K.C.; Law, Stephen C.K. 2010 2010-03-31 PMC N PMC7126395 19962281.0 10.1016/j.artmed.2009.07.011 g60hnqlf 0.467170 Qi_Z_2018, Chang_2011, Gamermann_2014, Bocharov_2018, Bifolchi_2013 Chasman_2016, Parolo_2018, Xiao_2017, Noh_H_2018
235 Niethammer_2013 Segmentation with area constraints Niethammer, Marc; Zach, Christopher 2013 2013-01-31 None N PMC3656501 23084504.0 10.1016/j.media.2012.09.002 61va8q92 0.466622 Polverino_2017, Chowell_2017, Qi_Z_2018, Bifolchi_2013 Acar_2016, Punjani_2019, Saad_2005, Punjani_2020
236 Chang_2011 Genome analysis with the conditional multinomial distribution profile Chang, Guisong; Wang, Tianming 2011 2011-02-21 PMC N PMC7094119 21129383.0 10.1016/j.jtbi.2010.11.034 1ef1cxc8 0.466599 Zheng_2008, Qi_Z_2018, Liu_L_2012, Saw_A_2019 Zhang_2017, Sheikh_2020, Pavlović-Lažetić_2004
237 Pereira_2014 A Chemoinformatics Approach to the Discovery of Lead-Like Molecules from Marine and Microbial Sources En Route to Antitumor and Antibiotic Drugs Pereira, Florbela; Latino, Diogo A. R. S.; Gaudêncio, Susana P. 2014 2014-01-27 COMM-USE N PMC3944514 24473174.0 10.3390/md12020757 ud3x78u3 0.465845 Montgomery_2004, Gamermann_2014, Sen_D_2018, Park_2012, Dai_Q_2012 Alvin_2014, Pereira_2015, van_der_Kooy_2013, Tabares_2011
238 Weber_2017 Novel algorithm for accelerated electroanatomic mapping and prediction of earliest activation of focal cardiac arrhythmias using mathematical optimization Weber, Tobias; Katus, Hugo A.; Sager, Sebastian; Scholz, Eberhard P. 2017 2017-06-23 None N PMC5446561 28279745.0 10.1016/j.hrthm.2017.03.001 q3vrzlz1 0.464920 Polverino_2017, Chang_2011, Qi_Z_2018, Bocharov_2018, Feng_2010 Chorba_2020, Alexander_1999, Santilli_2019
239 Lee_C_2017 A Pairwise Alignment Algorithm for Long Sequences of High Similarity Lee, Chien-Tai; Peng, Sheng-Lung 2017 2017-10-13 PMC N PMC7123042 10.1007/978-981-10-5508-9_27 t1e0tr4w 0.464122 Saw_A_2019, Chang_2011, Dai_Q_2012, Liu_L_2012 Saw_A_2019, Song_2005
240 Zuo_G_2015 CVTree3 Web Server for Whole-genome-based and Alignment-free Prokaryotic Phylogeny and Taxonomy Zuo, Guanghong; Hao, Bailin 2015 2015-11-10 None N PMC4678791 26563468.0 10.1016/j.gpb.2015.08.004 qutbqcwb 0.463542 Zheng_2008, Chang_2011, Cheng_2013, Lee_C_2017, Xu_Z_2009 Xu_Z_2009, Yu_Z_2010
241 Munteanu_2009 Multi-target QPDR classification model for human breast and colon cancer-related proteins using star graph topological indices Munteanu, Cristian Robert; Magalhães, Alexandre L.; Uriarte, Eugenio; González-Díaz, Humberto 2009 2009-03-21 PMC N PMC7094125 19111559.0 10.1016/j.jtbi.2008.11.017 5k8np850 0.461435 Qi_Z_2018, Chang_2011, Saw_A_2019, Dai_Q_2012, Feng_2010 Jia_J_2016, Munteanu_2008, Alejandro_2018, Wang_2010
242 Gatherer_2007 Genome Signatures, Self-Organizing Maps and Higher Order Phylogenies: A Parametric Analysis Gatherer, Derek 2007 2007-09-17 COMM-USE N PMC2684143 19468314.0 hltgn9aj 0.460623 Chang_2011, Lee_C_2017, Qi_Z_2018, Dai_Q_2012, Saw_A_2019 Zhang_2017, Kepler_2010, Walker_2015, Pessia_2015
243 Seo_J_2019 An Exploration of Machine Learning Methods for Robust Boredom Classification Using EEG and GSR Data Seo, Jungryul; Laine, Teemu H.; Sohn, Kyung-Ah 2019 2019-10-20 COMM-USE N PMC6832442 31635194.0 10.3390/s19204561 vtktgyvh 0.459330 Zheng_2020, Bocharov_2018, Mendizabal-Ruiz_2018, Polverino_2017, Qi_Z_2018 Pietrowsky_1996, Drake_2000, Liu_Y_2020, Jung_2017
244 McClure_2019 Unified feature association networks through integration of transcriptomic and proteomic data McClure, Ryan S.; Wendler, Jason P.; Adkins, Joshua N.; Swanstrom, Jesica; Baric, Ralph; Kaiser, Brooke L. Deatherage; Oxford, Kristie L.; Waters, Katrina M.; McDermott, Jason E. 2019 2019-09-17 COMM-USE N PMC6748406 31527878.0 10.1371/journal.pcbi.1007241 4grjr0h3 0.457777 Gamermann_2014, Chang_2011, Chasman_2016, Liu_Z_2008 Gibbs_2014, Xiao_2017, Vella_2017, Gibbs_2013
245 Bekaert_2009 Recode-2: new design, new search tools, and many more genes Bekaert, Michaël; Firth, Andrew E.; Zhang, Yan; Gladyshev, Vadim N.; Atkins, John F.; Baranov, Pavel V. 2009 2009-09-25 NONCOMM N PMC2808893 19783826.0 10.1093/nar/gkp788 8y8ho2x5 0.456913 Cheng_2013, Lee_C_2017, Brister_2015, Nelson_2012, Nelson_2012 Cobucci-Ponzano_2006, Wang_2006
246 Wu_T_2009 IRSS: a web-based tool for automatic layout and analysis of IRES secondary structure prediction and searching system in silico Wu, Tzong-Yuan; Hsieh, Chi-Chun; Hong, Jun-Jie; Chen, Chung-Yung; Tsai, Yuh-Show 2009 2009-05-27 COMM-USE N PMC2698906 19473520.0 10.1186/1471-2105-10-160 wt0lvhfl 0.456496 Martínez-Salas_2008, Cheng_2013, Lamb_1991, Lee_C_2017 Hong_2013, Fajardo_2012, Yang_2015
247 Hong_2013 Viral IRES Prediction System - a Web Server for Prediction of the IRES Secondary Structure In Silico Hong, Jun-Jie; Wu, Tzong-Yuan; Chang, Tsair-Yuan; Chen, Chung-Yung 2013 2013-11-05 COMM-USE N PMC3818432 24223923.0 10.1371/journal.pone.0079288 7pdh7alh 0.454979 Martínez-Salas_2008, Morikawa_1992, Wu_T_2009, Landry_2009 Wu_T_2009, Fajardo_2012
248 Vazquez_2020 Identification of COVID-19 Can be Quicker through Artificial Intelligence framework using a Mobile Phone-Based Survey in the Populations when Cities/Towns Are Under Quarantine Vazquez, Arni S.R. Srinivasa Rao; Jose A. 2020 2020-01-01 COMM-USE Y 10.1017/ice.2020.61 47goscew 0.453091 Coker_2007, Zheng_2020, Mack_2007, Mwabu_2008 Martin_2020, dos_Santos_2018, Kuan_2012
249 Davis_2007 Assessing the Certainty of Locations Produced by an Address Geocoding System Davis, Clodoveu A.; Fonseca, Frederico T. 2007 2007-01-13 PMC N PMC7087595 10.1007/s10707-006-0015-7 aebmrvea 0.452957 Mooney_2013, Coker_2007, Nelson_2012, Nelson_2012, Zheng_2020 Feng_2019, STRESMAN_2014, Chen_2018, Keller_2009
250 Su_H_2012 Framing the structure of global open innovation research Su, Hsin-Ning; Lee, Pei-Chun 2012 2012-04-30 PMC N 10.1016/j.joi.2011.12.001 xu4camqf 0.452111 Curcin_2005, Kelley_2011, Lipsitch_2014, Coker_2007 Lee_P_2011, Fu_H_2013, Annisa_2019
251 Bhandari_2020 Solubility-Weighted Index: fast and accurate prediction of protein solubility Bikash K. Bhandari; Paul P. Gardner; Chun Shen Lim 2020 2020-02-16 BioRxiv N 10.1101/2020.02.15.951012 2rpr7aph 0.449608 Qi_Z_2018, Lee_C_2017, Wang_2006, Dai_Q_2012, Montgomery_2004 Kwon_2019, Eshaghi_2005, Choo_2009, Robinson_2013
252 Kylberg_2009 Towards Automated TEM for Virus Diagnostics: Segmentation of Grid Squares and Detection of Regions of Interest Kylberg, Gustaf; Sintorn, Ida-Maria; Borgefors, Gunilla 2009 2009-01-01 PMC N PMC7120801 10.1007/978-3-642-02230-2_18 43igjn6x 0.449507 Polverino_2017, Dai_Q_2012, Chang_2011, Qi_Z_2018 Zhang_2013, Graham_2007, Field_1982, Pelchen‐Matthews_2007
253 Srinivasan_2004 Prediction of class I T-cell epitopes: evidence of presence of immunological hot spots inside antigens Srinivasan, K.N.; Zhang, G.L.; Khan, A.M.; August, J.T.; Brusic, V. 2004 2004-08-04 PMC N PMC7110022 15262812.0 10.1093/bioinformatics/bth943 vmc0rrrk 0.448230 Naito_2007, Rice_1992, Eisenlohr_1992, Wucherpfennig_1995 Wang_2012, Hua_R_2013, Kim_S_2012, TANG_2015
254 Li_J_2015 Concept learning via granular computing: A cognitive viewpoint Li, Jinhai; Mei, Changlin; Xu, Weihua; Qian, Yuhua 2015 2015-03-20 PMC N PMC7094283 10.1016/j.ins.2014.12.010 6zjf6qzz 0.448205 Mooney_2013, Bocharov_2018, Ropeik_2004, Walsh_2018 Ren_R_2016, Amadieu_2009, Matsuzaw_2011, Jiang_2009
255 Amyar_2020 Multi-task Deep Learning Based CT Imaging Analysis For COVID-19: Classification and Segmentation Amine Amyar; Romain Modzelewski; Su Ruan 2020 2020-04-21 BioRxiv Y 10.1101/2020.04.16.20064709 hiac6ur7 0.446788 Polverino_2017, Lee_C_2017, Dai_Q_2012, Qi_Z_2018, Mendizabal-Ruiz_2018
256 Cao_Y_2005 Information theory-based algorithm for in silico prediction of PCR products with whole genomic sequences as templates Cao, Youfang; Wang, Lianjie; Xu, Kexue; Kou, Chunhai; Zhang, Yulei; Wei, Guifang; He, Junjian; Wang, Yunfang; Zhao, Liping 2005 2005-07-26 COMM-USE N PMC1183192 16042814.0 10.1186/1471-2105-6-190 whoydkd5 0.445201 Chang_2011, Saw_A_2019, Dai_Q_2012, Saw_A_2019 Goldberg_1991
257 Kim_M_2013 A mass weighted chemical elastic network model elucidates closed form domain motions in proteins Kim, Min Hyeok; Seo, Sangjae; Jeong, Jay Il; Kim, Bum Joon; Liu, Wing Kam; Lim, Byeong Soo; Choi, Jae Boong; Kim, Moon Ki 2013 2013-03-18 PMC N PMC3649262 23456820.0 10.1002/pro.2244 p8n8va3y 0.445063 Qi_Z_2018, Bifolchi_2013, Kirillova_2009, Chang_2011, Liou_2013 Mascarenhas_2017, RAMAKRISHNA_2015, CAO_S_2012, Eddy_2018
258 Lefkowitz_2008 Virus Databases Lefkowitz, E.J.; Odom, M.R.; Upton, C. 2008 2008-12-31 PMC N PMC7150036 10.1016/b978-012374410-4.00719-6 60vrlrim 0.445063 Nelson_2012, Nelson_2012, Bocharov_2018, Curcin_2005 Gautam_2019, Nakai_1992, Myler_2008
259 Prosperi_2011 A novel methodology for large-scale phylogeny partition Prosperi, Mattia C.F.; Ciccozzi, Massimo; Fanti, luri; Saladini, Francesco; Pecorari, Monica; Borghi, Vanni; Di Giambenedetto, Simona; Bruzzone, Bianca; Capetti, Amedeo; Vivarelli, Angela; Rusconi, Stefano; Carla Re, Maria; Gismondo, Maria Rita; Sighinolfi, Laura; Gray, Rebecca R.; Salemi, Marco; Zazzi, Maurizio; De Luca, Andrea 2011 2011-05-24 PMC N PMC6045912 21610724.0 10.1038/ncomms1325 b13p3mca 0.443930 Chang_2011, Saw_A_2019, Qi_Z_2018, Lee_C_2017, Giardina_2017 Tibayrenc_2015, Velsko_2014
260 Finnie_2016 EpiJSON: A unified data-format for epidemiology Finnie, Thomas J.R.; South, Andy; Bento, Ana; Sherrard-Smith, Ellie; Jombart, Thibaut 2016 2016-06-30 None N PMC7104924 27266846.0 10.1016/j.epidem.2015.12.002 8gyejoc5 0.441195 Bocharov_2018, Lu_Q_2006, Polverino_2017, Zheng_2020, Nelson_2012 Cori_2018, Grad_2014, Robert_2020, Ramshaw_2019
261 Chen_2015 Nuclear Magnetic Resonance-Assisted Prediction of Secondary Structure for RNA: Incorporation of Direction-Dependent Chemical Shift Constraints Chen, Jonathan\nL.; Bellaousov, Stanislav; Tubbs, Jason D.; Kennedy, Scott D.; Lopez, Michael J.; Mathews, David H.; Turner, Douglas H. 2015 2015-10-09 None N PMC4666457 26451676.0 10.1021/acs.biochem.5b00833 6mb9w76f 0.440926 Liao_2006, Chang_2011, Polverino_2017, Dai_Q_2012, Dawson_2007 Cornish_2006, Low_J_2010
262 Punjani_2019 Non-uniform refinement: Adaptive regularization improves single particle cryo-EM reconstruction Ali Punjani; Haowei Zhang; David J. Fleet 2019 2019-12-16 BioRxiv N 10.1101/2019.12.15.877092 bqwmx5dy 0.440635 Montgomery_2004, Qi_Z_2018, DiMaio_2016, Dai_Q_2012 Punjani_2020, Zhong_2020, Acar_2016, Jonić_2016
263 Wu_G_2007 Prediction of mutations engineered by randomness in H5N1 neuraminidases from influenza A virus Wu, G.; Yan, S. 2007 2007-08-28 PMC N PMC7088166 17721674.0 10.1007/s00726-007-0579-z wocuomb1 0.440230 Chang_2011, Wu_G_2005, Qi_Z_2018, Cheng_2012 Wu_G_2007, Deng_2019, Wu_G_2006, Gutiérrez_2013
264 Tian_2014 Financial time series analysis based on information categorization method Tian, Qiang; Shang, Pengjian; Feng, Guochen 2014 2014-12-15 PMC N PMC7126836 10.1016/j.physa.2014.08.055 e4shf7qq 0.440230 Polverino_2017, Stenseth_2008, Zheng_2020, Chang_2011, Tian_2016 Tian_2016, Tung_2011, Lee_C_2008, Chen_2005
265 Swindell_2008 HOW LONG WILL MY MOUSE LIVE? MACHINE LEARNING APPROACHES FOR PREDICTION OF MOUSE LIFESPAN Swindell, William R.; Harper, James M.; Miller, Richard A. 2008 2008-09-23 PMC N PMC2693389 18840793.0 486j76e1 0.440230 Bocharov_2018, Chang_2011, Gamermann_2014, Chowell_2017, Qi_Z_2018 Lorè_2020, Dessale_2017, Chung_2010
266 Alguwaizani_2018 Predicting Interactions between Virus and Host Proteins Using Repeat Patterns and Composition of Amino Acids Alguwaizani, Saud; Park, Byungkyu; Zhou, Xiang; Huang, De-Shuang; Han, Kyungsook 2018 2018-05-09 COMM-USE N PMC5966669 29854357.0 10.1155/2018/1391265 0dxrai3j 0.438886 Lee_C_2017, Chang_2011, Sen_D_2018, Naito_2007 Zhou_2018, Goodacre_2020, Bahir_2009
267 Reddy_2007 Positional clustering improves computational binding site detection and identifies novel cis-regulatory sites in mammalian GABA(A) receptor subunit genes Reddy, Timothy E.; Shakhnovich, Boris E.; Roberts, Daniel S.; Russek, Shelley J.; DeLisi, Charles 2007 2007-01-03 NONCOMM N PMC1807961 17204484.0 10.1093/nar/gkl1062 m56agj4z 0.438773 Chang_2011, Qi_Z_2018, Liu_Z_2008, Dai_Q_2012 Hagiwara_2012, Sarnowska_2007
268 Wang_2018 A Comprehensive In Silico Method to Study the QSTR of the Aconitine Alkaloids for Designing Novel Drugs Wang, Ming-Yang; Liang, Jing-Wei; Mohamed Olounfeh, Kamara; Sun, Qi; Zhao, Nan; Meng, Fan-Hao 2018 2018-09-18 COMM-USE N PMC6225272 30231506.0 10.3390/molecules23092385 fewy8y4a 0.437485 Qi_Z_2018, Saw_A_2019, Dai_Q_2012, Chang_2011, Liu_Z_2008 Su_J_2014, Tran_2011
269 Rumiński_2016 Analysis of the parameters of respiration patterns extracted from thermal image sequences Rumiński, Jacek 2016 2016-12-31 PMC N PMC7127106 10.1016/j.bbe.2016.07.006 grs9eqql 0.437468 Polverino_2017, Bocharov_2018, Qi_Z_2018, Lloyd_2009 Budzan_2013, Lahiri_2012, Sun_G_2017, Hassan_2020
270 Santillana_2014 Using Clinicians’ Search Query Data to Monitor Influenza Epidemics Santillana, Mauricio; Nsoesie, Elaine O.; Mekaru, Sumiko R.; Scales, David; Brownstein, John S. 2014 2014-08-12 PMC N PMC4296132 25115873.0 10.1093/cid/ciu647 71tnv4lp 0.437455 UNKNOWN_2010, MacIntyre_2020, Coker_2007, Amirov_2007 Sebastiani_2006, Rojek_2020, Meerhoff_2006, Freifeld_2008
271 Qureshi_2015 AVP‐IC(50)Pred: Multiple machine learning techniques‐based prediction of peptide antiviral activity in terms of half maximal inhibitory concentration (IC(50)) Qureshi, Abid; Tandon, Himani; Kumar, Manoj 2015 2015-11-26 None N PMC7161829 26213387.0 10.1002/bip.22703 a6y0eoov 0.437093 Saw_A_2019, Lee_C_2017, Qi_Z_2018, Dai_Q_2012, Chang_2011
272 Thomas_2007 GraphDNA: a Java program for graphical display of DNA composition analyses Thomas, Jamie M; Horspool, Daniel; Brown, Gordon; Tcherepanov, Vasily; Upton, Chris 2007 2007-01-23 COMM-USE N PMC1783863 17244370.0 10.1186/1471-2105-8-21 51khqqwx 0.436915 Chang_2011, Cheng_2013, Lee_C_2017, Dai_Q_2012, Whiteford_2005 Nowak_1984, Otsuka_1999
273 Razzak_2020 Improving Coronavirus (COVID-19) Diagnosis using Deep Transfer Learning Imran Razzak; Saeeda Naz; Arshia Rehman; Ahmed Khan; Ahmad Zaib 2020 2020-04-17 BioRxiv Y 10.1101/2020.04.11.20054643 sgy03deg 0.436244 Bocharov_2018, Polverino_2017, Mooney_2013, Zheng_2020, von_der_Gracht_2010
274 Khanna_2011 In silico approach to screen compounds active against parasitic nematodes of major socio-economic importance Khanna, Varun; Ranganathan, Shoba 2011 2011-11-30 COMM-USE N PMC3278842 22373185.0 10.1186/1471-2105-12-s13-s25 ufdgi67q 0.435371 Bocharov_2018, Lee_C_2017, Sen_D_2018, Chang_2011, Gamermann_2014 Alvin_2014, Zhuo_2017, Tabares_2011, Roeber_2013
275 Hirahata_2006 Genome Information Broker for Viruses (GIB-V): database for comparative analysis of virus genomes Hirahata, Masaki; Abe, Takashi; Tanaka, Naoto; Kuwana, Yoshikazu; Shigemoto, Yasumasa; Miyazaki, Satoru; Suzuki, Yoshiyuki; Sugawara, Hideaki 2006 2006-12-07 NONCOMM N PMC1781101 17158166.0 10.1093/nar/gkl1004 pbhvz1k0 0.435007 UNKNOWN_2016, UNKNOWN_2018, O'Leary_2016, Cheng_2013 Crucière_1988
276 Greenbaum_2009 Ontology Development for the Immune Epitope Database Greenbaum, Jason A.; Vita, Randi; Zarebski, Laura M.; Sette, Alessandro; Peters, Bjoern 2009 2009-08-08 PMC N PMC7121563 10.1007/978-1-4419-0540-6_4 hgxhyg46 0.434955 Murray_2017, Nelson_2012, Nelson_2012, Coker_2007, Mooney_2013 Sathiamurthy_2005, Zamanzadeh_2017, Lollier_2011, Xue_G_2013
277 Nguyen_2019 A non-contact infection screening system using medical radar and Linux-embedded FPGA: Implementation and preliminary validation Nguyen, Cuong V.; Le Quang, Truong; Vu, Trung Nguyen; Le Thi, Hoi; Van, Kinh Nguyen; Trong, Thanh Han; Trong, Tuan Do; Sun, Guanghao; Ishibashi, Koichiro 2019 2019-12-31 PMC N PMC7103934 10.1016/j.imu.2019.100225 yt302jyx 0.433737 Polverino_2017, Saw_A_2019, Bocharov_2018, Lee_C_2017, Mendizabal-Ruiz_2018 Fu_M_2020, Wu_J_2020, Huang_2013, Ozturk_2020
278 Zhang_2008 Hotspot Hunter: a computational system for large-scale screening and selection of candidate immunological hotspots in pathogen proteomes Zhang, Guang Lan; Khan, Asif M; Srinivasan, Kellathur N; Heiny, AT; Lee, KX; Kwoh, Chee Keong; August, J Thomas; Brusic, Vladimir 2008 2008-02-13 COMM-USE N PMC2259420 18315850.0 10.1186/1471-2105-9-s1-s19 f0ahybvs 0.432983 Chang_2011, Naito_2007, Deng_2015, Khan_2006 Kumar_2019, Yu_H_2007, Hoppe_2013, Wang_2012
279 Li_H_2009 An effective docking strategy for virtual screening based on multi-objective optimization algorithm Li, Honglin; Zhang, Hailei; Zheng, Mingyue; Luo, Jie; Kang, Ling; Liu, Xiaofeng; Wang, Xicheng; Jiang, Hualiang 2009 2009-02-11 COMM-USE N PMC2753843 19210777.0 10.1186/1471-2105-10-58 udzz15bk 0.432841 Polverino_2017, Chang_2011, Qi_Z_2018, Saw_A_2019, Dai_Q_2012 Mukherjee_2011, Kumar_2015, Lee_H_2014, Liu_S_2012
280 Hung_2006 Alignment using genetic programming with causal trees for identification of protein functions Hung, Chun-Min; Huang, Yueh-Min; Chang, Ming-Shi 2006 2006-09-01 PMC N PMC7117053 10.1016/j.na.2005.09.048 6l688krc 0.432715 Chang_2011, Qi_Z_2018, Saw_A_2019, Dai_Q_2012 Lee_B_2009, Neer_1987, Li_C_2018
281 van_Dijk_2008 Predicting sub-Golgi localization of type II membrane proteins van Dijk, A. D. J.; Bosch, D.; ter Braak, C. J. F.; van der Krol, A. R.; van Ham, R. C. H. J. 2008 2008-08-15 PMC N PMC7110242 18562268.0 10.1093/bioinformatics/btn309 do0gb0g6 0.432505 Qi_Z_2018, Liu_Z_2008, Polverino_2017, Chang_2011, Saw_A_2019 Fu_J_2000, Chen_1991
282 Yeh_J_2008 Sunscope: A Video-guided Intubation System Through a Detachable Imaging Probe Yeh, Jia-Rong; Shieh, Jiann-Shing; Lin, Chih-Peng; Sun, Wei-Zen 2008 2008-06-30 PMC N 18593652.0 10.1016/s1875-4597(08)60029-6 qpuaokuz 0.431627 Lu_Q_2006, Polverino_2017, Montgomery_2004, Kylberg_2009 Wang_2012, Amirav_2015, Kang_2018
283 Bastani_2012 Contaminant source identification within a building: Toward design of immune buildings Bastani, Arash; Haghighat, Fariborz; Kozinski, Janusz A. 2012 2012-05-31 PMC N PMC7127283 10.1016/j.buildenv.2011.12.002 t54c2si1 0.431233 Polverino_2017, Bocharov_2018, Zheng_2020, Chang_2011, Qi_Z_2018 Cai_H_2014, Wu_Y_2017, Bolashikov_2009, Tung_2009
284 Chen_2003 ZCURVE_CoV: a new system to recognize protein coding genes in coronavirus genomes, and its applications in analyzing SARS-CoV genomes Chen, Ling-Ling; Ou, Hong-Yu; Zhang, Ren; Zhang, Chun-Ting 2003 2003-07-25 PMC N PMC7134609 12859968.0 10.1016/s0006-291x(03)01192-6 f3nbz3o1 0.430250 Lee_C_2017, Cheng_2013, Xu_J_2016, Gardner_2008, Chang_2011 Kumar_2007, Wang_2009
285 Plewczyński_2008 The interactome: Predicting the protein-protein interactions in cells Plewczyński, Dariusz; Ginalski, Krzysztof 2008 2008-10-06 PMC N PMC6275871 18839074.0 10.2478/s11658-008-0024-7 0ec2xunt 0.429288 Qi_Z_2018, Chang_2011, Polverino_2017, Liu_Z_2008 Zhang_2015, Kumar_2013, van_Dijk_2008, He_R_2008
286 Tang_2015 Inferring the hosts of coronavirus using dual statistical models based on nucleotide composition Tang, Qin; Song, Yulong; Shi, Mijuan; Cheng, Yingyin; Zhang, Wanting; Xia, Xiao-Qin 2015 2015-11-26 COMM-USE N PMC4660426 26607834.0 10.1038/srep17155 gl65i3s0 0.429233 Wang_2007, Lee_C_2017, Wang_2015, Lu_P_2016, Ryu_W_2017 Niemeyer_2018, Phan_2018, Gu_H_2020
287 Song_2018 iProt-Sub: a comprehensive package for accurately mapping and predicting protease-specific substrates and cleavage sites Song, Jiangning; Wang, Yanan; Li, Fuyi; Akutsu, Tatsuya; Rawlings, Neil D; Webb, Geoffrey I; Chou, Kuo-Chen 2018 2018-04-19 COMM-USE N PMC6556904 29897410.0 10.1093/bib/bby028 78vjzrpx 0.428981 Cho_Y_2005, Chang_2011, Qi_Z_2018, Liu_Z_2008, Dai_Q_2012 Someya_2008, Choo_2009
288 Mock_2019 VIDHOP, viral host prediction with Deep Learning Florian Mock; Adrian Viehweger; Emanuel Barth; Manja Marz 2019 2019-03-12 BioRxiv N 10.1101/575571 o4y8ci0n 0.428160 Lu_P_2016, Karlsson_2012, Rice_1992, Grewelle_2020, Lumby_2018 Lopez-Rincon_2020, Rabaa_2015, Wu_H_2016, Xie_X_2015
289 Yang_2013 Mining Social Media and Web Searches For Disease Detection Yang, Y. Tony; Horneffer, Michael; DiLisio, Nicole 2013 2013-05-31 NONCOMM N PMC4140326 25170475.0 10.4081/jphr.2013.e4 k3ujatua 0.427940 Coker_2007, Mwabu_2008, Wei_B_2011, Zhou_2020, Griffiths_2010 Seo_D_2017, VELASCO_2014, Freifeld_2008, Keller_2009
290 Sharma_2017 Study of Sentiment Analysis Using Hadoop Sharma, Dipty 2017 2017-10-04 PMC N PMC7122945 10.1007/978-981-10-6620-7_35 r4n2is6u 0.427562 Mooney_2013, Coker_2007, Curcin_2005, Zhou_2020, Ropeik_2004 Jung_2017, Zhao_2020, Choi_2017, Bello-Orgaz_2016
291 Soam_2010 Improved Prediction of MHC Class I Binders/Non-Binders Peptides Through Artificial Neural Network Using Variable Learning Rate: SARS Corona Virus, a Case Study Soam, Sudhir Singh; Bhasker, Bharat; Mishra, Bhartendu Nath 2010 2010-11-13 PMC N PMC7123181 21431562.0 10.1007/978-1-4419-7046-6_22 71njvx7l 0.426993 Lee_C_2017, Saw_A_2019, Chang_2011, Qi_Z_2018, Polverino_2017 Wang_2012, Kumar_2019, Poran_2020, Hou_Y_2012
292 Qureshi_2016 AVCpred: an integrated web server for prediction and design of antiviral compounds Qureshi, Abid; Kaur, Gazaldeep; Kumar, Manoj 2016 2016-09-09 PMC N PMC7162012 27490990.0 10.1111/cbdd.12834 gsv6dh36 0.425957 Lee_C_2017, Naito_2007, UNKNOWN_2010, Chang_2011, Santillana_2014
293 Zhou_2011 Multi-conformation 3D QSAR study of benzenesulfonyl-pyrazol-ester compounds and their analogs as cathepsin B inhibitors Zhou, Zhigang; Wang, Yanli; Bryant, Stephen H. 2011 2011-09-01 PMC N PMC3167229 21798778.0 10.1016/j.jmgm.2011.06.013 kiwi87c9 0.425508 Saw_A_2019, Dai_Q_2012, Qi_Z_2018, Chang_2011 Grazioso_2012, Niu_C_2008, Li_J_2006
294 Barlow_2012 In-silico studies in Chinese herbal medicines’ research: Evaluation of in-silico methodologies and phytochemical data sources, and a review of research to date Barlow, D.J.; Buriani, A.; Ehrman, T.; Bosisio, E.; Eberini, I.; Hylands, P.J. 2012 2012-04-10 PMC N PMC7126886 22326356.0 10.1016/j.jep.2012.01.041 udvrdglk 0.425150 Dove_2004, Curcin_2005, Fathelrahman_2018, Awaisu_2019 Lee_C_2020, Dong_2017, Eng_Y_2019, Zhang_2019
295 Sandhu_2016 Smart monitoring and controlling of Pandemic Influenza A (H1N1) using Social Network Analysis and cloud computing Sandhu, Rajinder; Gill, Harsuminder K.; Sood, Sandeep K. 2016 2016-01-31 PMC N 10.1016/j.jocs.2015.11.001 c6ttke66 0.424479 Mwabu_2008, Coker_2007, Wei_B_2011, UNKNOWN_2010, Zhou_2020 Abdalla_2020, dos_Santos_2018, Li_H_2015
296 Zheng_2020 Deep Learning-based Detection for COVID-19 from Chest CT using Weak Label Chuansheng Zheng; Xianbo Deng; Qing Fu; Qiang Zhou; Jiapei Feng; Hui Ma; Wenyu Liu; Xinggang Wang 2020 2020-03-17 BioRxiv Y 10.1101/2020.03.12.20027185 ll4rxd9p 0.423680 Polverino_2017, Saw_A_2019, Dai_Q_2012, Höhle_2007, Saw_A_2019 Fu_M_2020, Jin_C_2020, Wang_2020
297 Pereira_2015 QSAR-Assisted Virtual Screening of Lead-Like Molecules from Marine and Microbial Natural Sources for Antitumor and Antibiotic Drug Discovery Pereira, Florbela; Latino, Diogo A. R. S.; Gaudêncio, Susana P. 2015 2015-03-17 COMM-USE N PMC6272462 25789820.0 10.3390/molecules20034848 okp8ofl0 0.423297 Dai_Q_2012, Saw_A_2019, Qi_Z_2018, Chang_2011, Gamermann_2014 Pereira_2014, Alvin_2014, Zhou_2010
298 Pessia_2015 K-Pax2: Bayesian identification of cluster-defining amino acid positions in large sequence datasets Pessia, Alberto; Grad, Yonatan; Cobey, Sarah; Puranen, Juha Santeri; Corander, Jukka 2015 2015-07-15 COMM-USE N PMC5320600 28348810.0 10.1099/mgen.0.000025 zuh78iul 0.422929 Chang_2011, Qi_Z_2018, Dai_Q_2012, Lee_C_2017, Gamermann_2014 Zhang_2017, Kepler_2010, Ren_X_2008
299 Boulos_2005 Web GIS in practice III: creating a simple interactive map of England's Strategic Health Authorities using Google Maps API, Google Earth KML, and MSN Virtual Earth Map Control Boulos, Maged N Kamel 2005 2005-09-21 COMM-USE N PMC1242244 16176577.0 10.1186/1476-072x-4-22 5dx3lscp 0.422929 Murray_2017, Lipsitch_2014, MacIntyre_2020, Rodier_2007 Boulos_2004, Kost_2019, Stevens_2015, Ramachandran_2011
300 Ardabili_2020 COVID-19 Outbreak Prediction with Machine Learning Sina F. Ardabili; Amir MOSAVI; Pedram Ghamisi; Filip Ferdinand; Annamaria R. Varkonyi-Koczy; Uwe Reuter; Timon Rabczuk; Peter M. Atkinson 2020 2020-04-22 BioRxiv Y 10.1101/2020.04.17.20070094 nu0pn2q8 0.422929 Bocharov_2018, Chowell_2017, Duan_2015, Liou_2013, Gamermann_2014
301 Fontanini_2015 Constructing Markov matrices for real-time transient contaminant transport analysis for indoor environments Fontanini, Anthony D.; Vaidya, Umesh; Ganapathysubramanian, Baskar 2015 2015-12-31 PMC N PMC7125716 10.1016/j.buildenv.2015.07.020 raycnjbl 0.422665 Bifolchi_2013, So_M_2008, Chowell_2017, Bocharov_2018 Chen_2015, Hathway_2011, Cai_H_2014, Chen_2013
302 Shegogue_2005 Integration of the Gene Ontology into an object-oriented architecture Shegogue, Daniel; Zheng, W Jim 2005 2005-05-10 COMM-USE N PMC1156866 15885145.0 10.1186/1471-2105-6-113 tv1fx7sy 0.422566 Montgomery_2004, Sen_D_2018, Qi_Z_2018, Liu_Z_2008 Foulger_2015, Sathiamurthy_2005, Vella_2017, Nakai_1992
303 Xiaoxuan_2020 Can Search Query Forecast successfully in China's 2019-nCov pneumonia? Li Xiaoxuan; Wu Qi; Lv Benfu 2020 2020-02-18 BioRxiv Y 10.1101/2020.02.12.20022400 vv1wjen0 0.421838 Lipsitch_2014, UNKNOWN_2010, Polverino_2017, Lee_C_2017, Chang_2011 He_Y_2020, Wang_2020, Li_M_2020
304 Keller_2009 Automated vocabulary discovery for geo-parsing online epidemic intelligence Keller, Mikaela; Freifeld, Clark C; Brownstein, John S 2009 2009-11-24 COMM-USE N PMC2787530 19930702.0 10.1186/1471-2105-10-385 f4q1r3vu 0.421108 Coker_2007, Wei_B_2011, Mwabu_2008, Dentico_2005, Griffiths_2010 Freifeld_2008, Collier_2007, Zhang_2009, Keller_2009
305 Choo_2009 A comprehensive assessment of N-terminal signal peptides prediction methods Choo, Khar Heng; Tan, Tin Wee; Ranganathan, Shoba 2009 2009-12-03 COMM-USE N PMC2788353 19958512.0 10.1186/1471-2105-10-s15-s2 2dbpm0nt 0.419997 Saw_A_2019, Chang_2011, Lee_C_2017, Qi_Z_2018, Dai_Q_2012 Voß_D_2009, van_Dijk_2008
306 Modak_2019 Application of Support Vector Machines in Viral Biology Modak, Sonal; Mehta, Swati; Sehgal, Deepak; Valadi, Jayaraman 2019 2019-11-23 PMC N PMC7114997 10.1007/978-3-030-29022-1_12 abn1i3ir 0.419995 Bocharov_2018, UNKNOWN_2004, Duan_2015, Johnson_2018 van_der_Linden_2014, Zheng_2011, Zhong_2007
307 Li_Z_2007 Structural parameterization and functional prediction of antigenic polypeptome sequences with biological activity through quantitative sequence-activity models (QSAM) by molecular electronegativity edge-distance vector (VMED) Li, ZhiLiang; Wu, ShiRong; Chen, ZeCong; Ye, Nancy; Yang, ShengXi; Liao, ChunYang; Zhang, MengJun; Yang, Li; Mei, Hu; Yang, Yan; Zhao, Na; Zhou, Yuan; Zhou, Ping; Xiong, Qing; Xu, Hong; Liu, ShuShen; Ling, ZiHua; Chen, Gang; Li, GenRong 2007 2007-01-01 PMC N PMC7089106 17879071.0 10.1007/s11427-007-0080-7 7t4lizde 0.419925 Saw_A_2019, Qi_Z_2018, Chang_2011, Dai_Q_2012, Feng_2010 Gordon_1991, Wang_2013
308 Shao_2017 Long-term prediction of dynamic distribution of passive contaminant in complex recirculating ventilation system Shao, Xiaoliang; Li, Xianting; Ma, Xiaojun; Zhu, Fenfei 2017 2017-08-15 PMC N PMC7126526 10.1016/j.buildenv.2017.05.012 j3jskkmw 0.418861 Bocharov_2018, Bifolchi_2013, Lloyd_2009, Qi_Z_2018, Chowell_2017 Li_X_2011, Mu_D_2016, Mu_D_2017, Zhu_S_2010
309 Ekins_2007 In silico pharmacology for drug discovery: applications to targets and beyond Ekins, S; Mestres, J; Testa, B 2007 2007-09-01 PMC N PMC1978280 17549046.0 10.1038/sj.bjp.0707306 qah877pk 0.418520 Sen_D_2018, Johnson_2018, Bocharov_2018, Webb_2014, UNKNOWN_2004 Chiba_2012, van_der_Kooy_2013, Wang_2018, Li_J_2006
310 Sood_2017 Wearable IoT sensor based healthcare system for identifying and controlling chikungunya virus Sood, Sandeep K.; Mahajan, Isha 2017 2017-10-31 PMC N PMC7114341 10.1016/j.compind.2017.05.006 3l2dbnjb 0.418304 Mack_2007, Coker_2007, Mwabu_2008, Wei_B_2011, Zhou_2020 Sareen_2016, Zhu_H_2020, Lwin_2017, Sandhu_2016
311 Vila_2010 Sequential nearest-neighbor effects on computed (13)C(α) chemical shifts Vila, Jorge A.; Serrano, Pedro; Wüthrich, Kurt; Scheraga, Harold A. 2010 2010-07-20 None N PMC2970923 20644980.0 10.1007/s10858-010-9435-7 1t433pfu 0.417790 Liao_2006, Qi_Z_2018, Wu_G_2005, Saw_A_2019, Callison_1999 Lee_G_2012, Cornish_2006
312 Punjani_2020 3D Variability Analysis: Directly resolving continuous flexibility and discrete heterogeneity from single particle cryo-EM images Ali Punjani; David J. Fleet 2020 2020-04-09 BioRxiv N 10.1101/2020.04.08.032466 yxo8oanc 0.417693 Qi_Z_2018, Chang_2011, Dawson_2007, Dai_Q_2012, Liu_Z_2008 Zhong_2020, Jonić_2016, Punjani_2019, Effantin_2016
313 Ji_X_2020 TWIRLS, an automated topic-wise inference method based on massive literature, suggests a possible mechanism via ACE2 for the pathological changes in the human host after coronavirus infection Xiaoyang Ji; Chunming Zhang; Yubo Zhai; Zhonghai Zhang; Chunli Zhang; Yiqing Xue; Guangming Tan; Gang Niu 2020 2020-03-02 BioRxiv N 10.1101/2020.02.27.967588 eaglecq7 0.417116 Polverino_2017, Bocharov_2018, Leach_2010, Coker_2007, Mwabu_2008 Ji_X_2020, Joshi_2020, Keller_2009, Choi_2017
314 Vila_2014 (13)C Chemical Shifts in Proteins: A Rich Source of Encoded Structural Information Vila, Jorge A.; Arnautova, Yelena A. 2014 2014-01-01 PMC N PMC7121069 10.1007/978-3-642-28554-7_19 jz2mrn4t 0.415910 Liu_Z_2008, Qi_Z_2018, Kirillova_2009, Plewczyński_2008, Chang_2011 Vila_2018, Lee_G_2012, Buller_2012
315 Qi_X_2020 A network-based method with privacy-preserving for identifying influential providers in large healthcare service systems Qi, Xiaoyu; Mei, Gang; Cuomo, Salvatore; Xiao, Lei 2020 2020-04-06 PMC N 10.1016/j.future.2020.04.004 w88hdlmr 0.415840 Coker_2007, Wei_B_2011, Griffiths_2010, Mwabu_2008, Fielding_2014 Chen_2007, Chen_2010, Razaque_2019
316 Zhang_2005 Web-based electronic patient records for collaborative medical applications Zhang, Jianguo; Sun, Jianyong; Yang, Yuanyuan; Chen, Xiaomeng; Meng, Lili; Lian, Ping 2005 2005-04-30 PMC N PMC7126510 15755531.0 10.1016/j.compmedimag.2004.09.005 srtkqr13 0.415115 MacIntyre_2020, Curcin_2005, Murray_2017, Lu_Q_2006 Lapinsky_2004, Séroussi_2015, Freifeld_2008
317 Gibbs_2013 Protein co-expression network analysis (ProCoNA) Gibbs, David L; Baratt, Arie; Baric, Ralph S; Kawaoka, Yoshihiro; Smith, Richard D; Orwoll, Eric S; Katze, Michael G; McWeeney, Shannon K 2013 2013-06-01 COMM-USE N PMC3695838 23724967.0 10.1186/2043-9113-3-11 g55witln 0.414863 Gamermann_2014, Sen_D_2018, Qi_Z_2018, Chang_2011 Xiao_2017, Vella_2017, Li_S_2012, Noh_H_2018
318 Huang_2011 Bioinformatics Resources and Tools for Phage Display Huang, Jian; Ru, Beibei; Dai, Ping 2011 2011-01-18 COMM-USE N PMC6259106 21245805.0 10.3390/molecules16010694 407bthqj 0.414329 UNKNOWN_2004, Lu_Q_2006, Zheng_2020, Sen_D_2018 Wu_C_2016, van_der_Linden_2014, Huang_2006
319 Qiu_T_2018 CE-BLAST makes it possible to compute antigenic similarity for newly emerging pathogens Qiu, Tianyi; Yang, Yiyan; Qiu, Jingxuan; Huang, Yang; Xu, Tianlei; Xiao, Han; Wu, Dingfeng; Zhang, Qingchen; Zhou, Chen; Zhang, Xiaoyan; Tang, Kailin; Xu, Jianqing; Cao, Zhiwei 2018 2018-05-02 None N PMC5932059 29720583.0 10.1038/s41467-018-04171-2 2upc2spn 0.414303 Montefiori_2007, Qiu_X_2019, Fauci_2006, Tripp_2014, Li_L_2014 Jiang_2017, Shi_J_2015, Ismail_2020, Davidson_2019
320 Jiang_2017 Identifying Personal Health Experience Tweets with Deep Neural Networks Jiang, Keyuan; Gupta, Ravish; Gupta, Matrika; Calix, Ricardo A.; Bernard, Gordon R. 2017 2017-07-01 PMC N PMC5702551 29060084.0 10.1109/embc.2017.8037039 k26orfrt 0.413386 Knapp_2008, Zhou_2020, Coker_2007, Griffiths_2010, Amirov_2007 Dandekar_2017, Hu_G_2019
321 Khan_2008 Bayesian, Maximum Parsimony and UPGMA Models for Inferring the Phylogenies of Antelopes Using Mitochondrial Markers Khan, Haseeb A.; Arif, Ibrahim A.; Bahkali, Ali H.; Al Farhan, Ahmad H.; Al Homaidan, Ali A. 2008 2008-10-06 COMM-USE N PMC2614192 19204824.0 r97x0paz 0.412112 Zheng_2008, Chieochansin_2010, Saw_A_2019, Chang_2011 Banks_2006, Ghazisaeedi_2017, Ramírez_2014, Burger_2004
322 Li_B_2008 Flow-injection chemiluminescence determination of chrysin and baicalein assisted by theoretical prediction of chemiluminescence behavior of chrysin and baicalein Li, Baoxin; Guo, Lili; Xu, Chunli; Ma, Limei 2008 2008-12-01 PMC N 10.1016/j.saa.2008.02.007 y5j07feh 0.411767 Bocharov_2018, Qi_Z_2018, Chang_2011, Saw_A_2019, Mendizabal-Ruiz_2018 Zhao_2009, Xie_J_2018, Guo_L_2015, Li_H_2004
323 Wilm_2012 LoFreq: a sequence-quality aware, ultra-sensitive variant caller for uncovering cell-population heterogeneity from high-throughput sequencing datasets Wilm, Andreas; Aw, Pauline Poh Kim; Bertrand, Denis; Yeo, Grace Hui Ting; Ong, Swee Hoe; Wong, Chang Hua; Khor, Chiea Chuen; Petric, Rosemary; Hibberd, Martin Lloyd; Nagarajan, Niranjan 2012 2012-10-12 NONCOMM N PMC3526318 23066108.0 10.1093/nar/gks918 bmcku2yb 0.411766 Deng_2015, Harel_2019, Chang_2011, Pandya_2007, Montgomery_2004 Chen-Harris_2013, Harel_2019, Lewandowska_2017, Tausch_2018
324 Wu_G_2007 Prediction of mutations engineered by randomness in H5N1 hemagglutinins of influenza A virus Wu, G.; Yan, S. 2007 2007-11-02 PMC N PMC7088403 17973072.0 10.1007/s00726-007-0602-4 rx0os4ke 0.411766 Wu_G_2005, Qi_Z_2018, Chang_2011, Cheng_2012 Wu_G_2007, Wu_G_2006, Gutiérrez_2013, Deng_2019
325 Heal_2018 Applying graph theory to protein structures: an Atlas of coiled coils Heal, Jack W; Bartlett, Gail J; Wood, Christopher W; Thomson, Andrew R; Woolfson, Derek N 2018 2018-10-01 COMM-USE N PMC6157074 29722888.0 10.1093/bioinformatics/bty347 pq1vaknj 0.411405 Wang_2006, Montgomery_2004, Lee_C_2017, Qi_Z_2018, Lu_Q_2006 Apgar_2008, Song_2005, Munteanu_2008, van_Dijk_2008
326 Cope_2020 Identification of the relative timing of infectiousness and symptom onset for outbreak control Cope, Robert C.; Ross, Joshua V. 2020 2020-02-07 PMC N PMC7094159 31734243.0 10.1016/j.jtbi.2019.110079 hmx2wy1p 0.409983 Bocharov_2018, Cope_2019, Chang_2011, Liou_2013 Cope_2019, Nishiura_2007, Kretzschmar_2020, Kucharski_2015
327 Chen_2018 Probability Sampling by Connecting Space with Households Using GIS/GPS Technologies Chen, Xinguang; Hu, Hui; Xu, Xiaohui; Gong, Jie; Yan, Yaqiong; Li, Fang 2018 2018-01-23 PMC N PMC7107540 10.1093/jssam/smx032 ovuofl9q 0.409537 Knapp_2008, Zhou_2020, Mwabu_2008, Fielding_2014, Polverino_2017 STRESMAN_2014, Kiti_2019, Nöremark_2013, Lai_P_2009
328 Ji_X_2020 TWIRLS, an automated topic-wise inference method based on massive literature, suggests a possible mechanism via ACE2 for the pathological changes in the human host after coronavirus infection Xiaoyang Ji; Chunming Zhang; Yubo Zhai; Zhonghai Zhang; Yiqing Xue; Chunli Zhang; Guangming Tan; Gang Niu 2020 2020-02-26 BioRxiv N 10.1101/2020.02.24.20025437 f21dknmb 0.409537 Polverino_2017, Bocharov_2018, Coker_2007, Leach_2010, Mack_2007 Ji_X_2020, Joshi_2020, Keller_2009, Choi_2017
329 Gardner_2005 Software for optimization of SNP and PCR-RFLP genotyping to discriminate many genomes with the fewest assays Gardner, Shea N; Wagner, Mark C 2005 2005-05-16 COMM-USE N PMC1156889 15904493.0 10.1186/1471-2164-6-73 ckby80vf 0.409157 Chang_2011, Cheng_2013, Lee_C_2017, Saw_A_2019, Saw_A_2019 Wang_1996, Jang_2007, Dettogni_2013
330 González-Díaz_2014 Model for Vaccine Design by Prediction of B-Epitopes of IEDB Given Perturbations in Peptide Sequence, In Vivo Process, Experimental Techniques, and Source or Host Organisms González-Díaz, Humberto; Pérez-Montoto, Lázaro G.; Ubeira, Florencio M. 2014 2014-01-12 COMM-USE N PMC3987976 24741624.0 10.1155/2014/768515 uh5rkjwx 0.407599 Bocharov_2018, Qi_Z_2018, Gamermann_2014, Chang_2011, Saw_A_2019 Kumar_2019, Uslupehlivan_2020, Jiang_2017, Huang_2012
331 Mead_2019 Visualization of protein sequence space with force-directed graphs, and their application to the choice of target-template pairs for homology modelling Mead, Dylan J.T.; Lunagomez, Simón; Gatherer, Derek 2019 2019-11-30 PMC N PMC7110651 31377535.0 10.1016/j.jmgm.2019.07.014 azpg5yrh 0.407562 Chang_2011, Saw_A_2019, Lee_C_2017, Zheng_2008, Dai_Q_2012 Zemla_2011, Li_C_2018, Yamasaki_2019, Suresh_2015
332 Zheng_2008 A complexity-based measure and its application to phylogenetic analysis Zheng, Xiaoqi; Li, Chun; Wang, Jun 2008 2008-12-09 PMC N PMC7088198 32214590.0 10.1007/s10910-008-9511-3 g6obo798 0.406990 Chang_2011, Saw_A_2019, Lee_C_2017, Chang_2011 Gamermann_2014, Zheng_2009, Banks_2006, Yu_Z_2010
333 Cai_C_2006 Prediction of Transmembrane Proteins from Their Primary Sequence by Support Vector Machine Approach Cai, C. Z.; Yuan, Q. F.; Xiao, H. G.; Liu, X. H.; Han, L. Y.; Chen, Y. Z. 2006 2006-01-01 PMC N PMC7121931 10.1007/11816102_56 rktwtqtq 0.403540 Saw_A_2019, Lee_C_2017, Qi_Z_2018, Chang_2011, Gardner_2004 Lee_B_2009, Wang_2013, Han_L_2005
334 Hu_P_2007 A Web-Based System for Infectious Disease Data Integration and Sharing: Evaluating Outcome, Task Performance Efficiency, User Information Satisfaction, and Usability Hu, Paul Jen-Hwa; Zeng, Daniel; Chen, Hsinchun; Larson, Catherine A.; Tseng, Chunju 2007 2007-01-01 PMC N PMC7122142 10.1007/978-3-540-72608-1_13 ygr1kv9r 0.403356 Mwabu_2008, Amirov_2007, Coker_2007, Zhou_2020 Freifeld_2008, Daughton_2017, Keller_2009, Seo_D_2017
335 Agrawal_2018 Prediction of Antimicrobial Potential of a Chemically Modified Peptide From Its Tertiary Structure Agrawal, Piyush; Raghava, Gajendra P. S. 2018 2018-10-26 COMM-USE N PMC6212470 30416494.0 10.3389/fmicb.2018.02551 4hlcxccy 0.403298 Qi_Z_2018, Saw_A_2019, Dai_Q_2012, Chang_2011, Lee_C_2017 Joshi_2017, Lee_C_2019, Alvin_2014, Patra_2012
336 Bottomly_2015 plethy: management of whole body plethysmography data in R Bottomly, Daniel; Wilmot, Beth; McWeeney, Shannon K 2015 2015-04-29 None N PMC4434826 25924931.0 10.1186/s12859-015-0547-7 ermuiujq 0.402976 Lu_Q_2006, Montgomery_2004, Kurc_2006, Bocharov_2018, Lipsitch_2014 van_Oort_2017, Fan_R_2008
337 Malanoski_2006 Automated identification of multiple micro-organisms from resequencing DNA microarrays Malanoski, Anthony P.; Lin, Baochuan; Wang, Zheng; Schnur, Joel M.; Stenger, David A. 2006 2006-09-29 None N PMC1636417 17012284.0 10.1093/nar/gkl565 cxzlmfst 0.402533 Chang_2011, Lee_C_2017, Liou_2013, Zheng_2020 Giles_2015, Lin_B_2006, Wang_2017
338 Molodenskiy_2019 An automated data processing and analysis pipeline for transmembrane proteins in detergent solutions D. Molodenskiy; H. Mertens; D. Svergun 2019 2019-07-24 BioRxiv N 10.1101/714303 lhriiv4u 0.401248 DiMaio_2016, Montgomery_2004, Mendizabal-Ruiz_2018, Qi_Z_2018, Bocharov_2018 van_Dijk_2008, Voß_D_2009, Pandey_2016, Pedro_2019
339 Liu_Y_2014 A FTA-based method for risk decision-making in emergency response Liu, Yang; Fan, Zhi-Ping; Yuan, Yuan; Li, Hongyan 2014 2014-02-28 PMC N PMC7117036 10.1016/j.cor.2012.08.015 5q40uttg 0.400613 Bocharov_2018, Alves_2007, Mwabu_2008, Amirov_2007, Polverino_2017 Price_2016, Djalali_2012, Brandeau_2009, Zhong_2010
340 Delli Ponti_2017 A high-throughput approach to profile RNA structure Delli Ponti, Riccardo; Marti, Stefanie; Armaos, Alexandros; Tartaglia, Gian Gaetano 2017 2017-03-17 NONCOMM N PMC5389523 27899588.0 10.1093/nar/gkw1094 k23xlzj0 0.400582 Saw_A_2019, Yu_H_2007, Wang_2006, Cheng_2013, Dai_Q_2012 Tremblay-Létourneau_2011, Kolchanov_1996, Low_J_2010
341 Banks_2006 Dissecting the ancient rapid radiation of microgastrine wasp genera using additional nuclear genes Banks, Jonathan C.; Whitfield, James B. 2006 2006-12-31 PMC N PMC7129091 16854601.0 10.1016/j.ympev.2006.06.001 ne9d0siv 0.400554 Chang_2011, Zheng_2008, Kinene_2016, Francis_2016 Harper_2013, Walker_2011
342 Snyder_2006 PATRIC: The VBI PathoSystems Resource Integration Center Snyder, E. E.; Kampanya, N.; Lu, J.; Nordberg, E. K.; Karur, H. R.; Shukla, M.; Soneja, J.; Tian, Y.; Xue, T.; Yoo, H.; Zhang, F.; Dharmanolla, C.; Dongre, N. V.; Gillespie, J. J.; Hamelius, J.; Hance, M.; Huntington, K. I.; Jukneliene, D.; Koziski, J.; Mackasmiel, L.; Mane, S. P.; Nguyen, V.; Purkayastha, A.; Shallom, J.; Yu, G.; Guo, Y.; Gabbard, J.; Hix, D.; Azad, A. F.; Baker, S. C.; Boyle, S. M.; Khudyakov, Y.; Meng, X. J.; Rupprecht, C.; Vinje, J.; Crasta, O. R.; Czar, M. J.; Dickerman, A.; Eckart, J. D.; Kenyon, R.; Will, R.; Setubal, J. C.; Sobral, B. W. S. 2006 2006-11-16 NONCOMM N PMC1669763 17142235.0 10.1093/nar/gkl858 3ulketgy 0.400431 Murray_2017, UNKNOWN_2018, UNKNOWN_2016, Rodier_2007, Cheng_2013 Zhang_2007, McGarvey_2009, Crawford_2019, Sun_D_2016
343 Stanstrup_2019 The metaRbolomics Toolbox in Bioconductor and beyond Stanstrup, Jan; Broeckling, Corey D.; Helmus, Rick; Hoffmann, Nils; Mathé, Ewy; Naake, Thomas; Nicolotti, Luca; Peters, Kristian; Rainer, Johannes; Salek, Reza M.; Schulze, Tobias; Schymanski, Emma L.; Stravs, Michael A.; Thévenot, Etienne A.; Treutler, Hendrik; Weber, Ralf J. M.; Willighagen, Egon; Witting, Michael; Neumann, Steffen 2019 2019-09-23 COMM-USE N PMC6835268 31548506.0 10.3390/metabo9100200 s8ohts1j 0.398933 Lu_Q_2006, Montgomery_2004, May_E_2016, Kurc_2006 Liu_G_2015, McGarvey_2009, Chen_2013
344 Yoon_2016 Visualization of Data Regarding Infections Using Eye Tracking Techniques Yoon, Sunmoo; Cohen, Bevin; Cato, Kenrick D.; Liu, Jianfang; Larson, Elaine L. 2016 2016-04-07 PMC N PMC4939395 27061619.0 10.1111/jnu.12204 ohthcjxc 0.398210 Knapp_2008, Griffiths_2010, Amirov_2007, Mwabu_2008, Mooney_2013 Biezen_2019, Fix_G_2019, Lam_K_2013
345 Lockwood_2011 Neighborhood Properties Are Important Determinants of Temperature Sensitive Mutations Lockwood, Svetlana; Krishnamoorthy, Bala; Ye, Ping 2011 2011-12-02 None N PMC3229608 22164302.0 10.1371/journal.pone.0028507 v1p4ut66 0.398111 Wu_G_2005, Chang_2011, Qi_Z_2018, Saw_A_2019, Dai_Q_2012
346 Zemla_2011 StralSV: assessment of sequence variability within similar 3D structures and application to polio RNA-dependent RNA polymerase Zemla, Adam T; Lang, Dorothy M; Kostova, Tanya; Andino, Raul; Ecale Zhou, Carol L 2011 2011-06-02 COMM-USE N PMC3121648 21635786.0 10.1186/1471-2105-12-226 s7kzp795 0.398000 Chang_2011, Lee_C_2017, Qi_Z_2018, Saw_A_2019 Lang_2012, Scrima_2004
347 Brodie_2004 Base-By-Base: Single nucleotide-level analysis of whole viral genome alignments Brodie, Ryan; Smith, Alex J; Roper, Rachel L; Tcherepanov, Vasily; Upton, Chris 2004 2004-07-14 PMC N PMC481056 15253776.0 10.1186/1471-2105-5-96 lwla5ugt 0.397735 Cheng_2013, Montgomery_2004, Chang_2011, Lee_C_2017, Wang_2006 Wang_2010, Lauber_2013
348 Lopez-Rincon_2020 Accurate Identification of SARS-CoV-2 from Viral Genome Sequences using Deep Learning Alejandro Lopez-Rincon; Alberto Tonda; Lucero Mendoza-Maldonado; Eric Claassen; Johan Garssen; Aletta D. Kraneveld 2020 2020-03-14 BioRxiv Y 10.1101/2020.03.13.990242 c2lljdi7 0.397343 Lee_C_2017, Chang_2011, Qi_Z_2018, Cheng_2012, Gardner_2004 OKBA_2020, Hoteit_2016, Niemeyer_2018, Aouadi_2017
349 Besançon_2020 Umbrella Visualization: A method of analysis dedicated to glycan flexibility with UnityMol Besançon, Camille; Guillot, Alexandre; Blaise, Sébastien; Dauchez, Manuel; Belloy, Nicolas; Prévoteau-Jonquet, Jessica; Baud, Stéphanie 2020 2020-02-15 PMC N PMC7128144 31302178.0 10.1016/j.ymeth.2019.07.010 y9y7d96c 0.397286 Qi_Z_2018, Bocharov_2018, Polverino_2017, Chang_2011, Liu_Z_2008 Nagae_2018, Cao_L_2018, Voß_D_2009, Satoh_2015
350 smith_2019 Kin and group selection are both flawed but useful data analysis tools jeff smith; R. Fredrik Inglis 2019 2019-08-29 BioRxiv N 10.1101/742122 u2mt3xzc 0.396918 Bocharov_2018, UNKNOWN_2004, Chowell_2017, Bauer_2009 Baele_2016, Getz_2019, Hünemeier_2012, Lemey_2009
351 Zhou_2010 QSAR models for predicting cathepsin B inhibition by small molecules—Continuous and binary QSAR models to classify cathepsin B inhibition activities of small molecules Zhou, Zhigang; Wang, Yanli; Bryant, Stephen H. 2010 2010-06-30 None N PMC2873115 20194042.0 10.1016/j.jmgm.2010.01.009 bs17igjs 0.396235 Saw_A_2019, Chang_2011, Qi_Z_2018, Dai_Q_2012, Feng_2010 Wang_2006, Tian_2012, Theerawatanasirikul_2020, Lee_H_2014
352 Bender_2006 Chapter 9 Molecular Similarity: Advances in Methods, Applications and Validations in Virtual Screening and QSAR Bender, Andreas; Jenkins, Jeremy L.; Li, Qingliang; Adams, Sam E.; Cannon, Edward O.; Glen, Robert C. 2006 2006-12-31 PMC N 10.1016/s1574-1400(06)02009-3 ehrww6uu 0.396022 Johnson_2018, UNKNOWN_2004, Bocharov_2018, Sen_D_2018 Ekins_2007, Wang_2006, Lee_H_2014, Mukherjee_2011
353 Perez_2011 Global animal disease surveillance Perez, A.; AlKhamis, M.; Carlsson, U.; Brito, B.; Carrasco-Medanic, R.; Whedbee, Z.; Willeberg, P. 2011 2011-09-30 PMC N 22748173.0 10.1016/j.sste.2011.07.006 8nw2al5o 0.396022 Bocharov_2018, Mwabu_2008, Duan_2015, Alves_2007 Hale_2019, Clements_2009, Frössling_2012, Rabaa_2015
354 Khobahi_2020 CoroNet: A Deep Network Architecture for Semi-Supervised Task-Based Identification of COVID-19 from Chest X-ray Images Shahin Khobahi; Chirag Agarwal; Mojtaba Soltanalian 2020 2020-04-17 BioRxiv Y 10.1101/2020.04.14.20065722 qw5ly6rl 0.395300 Polverino_2017, Lee_C_2017, Chang_2011, Bocharov_2018, Mendizabal-Ruiz_2018
355 Meyerholz_2018 Fundamental Concepts for Semiquantitative Tissue Scoring in Translational Research Meyerholz, David K; Beck, Amanda P 2018 2018-01-01 PMC N PMC6927897 30715381.0 10.1093/ilar/ily025 j11yaga2 0.395244 Polverino_2017, Bocharov_2018, Zheng_2020, Mendizabal-Ruiz_2018, Chowell_2017 Graham_2007, Vertrees_2009, Merrill_2008, Meyerholz_2019
356 Yang_2019 An implementation of real-time air quality and influenza-like illness data storage and processing platform Yang, Chao-Tung; Chen, Cai-Jin; Tsan, Yu-Tse; Liu, Po-Yu; Chan, Yu-Wei; Chan, Wei-Chen 2019 2019-11-30 PMC N PMC7126110 10.1016/j.chb.2018.10.009 uxmqlx4y 0.395026 Mack_2007, Mwabu_2008, Zhou_2020, Wei_B_2011, Stenseth_2008 Abdalla_2020, John_2019
357 Pickett_2012 Virus Pathogen Database and Analysis Resource (ViPR): A Comprehensive Bioinformatics Database and Analysis Resource for the Coronavirus Research Community Pickett, Brett E.; Greer, Douglas S.; Zhang, Yun; Stewart, Lucy; Zhou, Liwei; Sun, Guangyu; Gu, Zhiping; Kumar, Sanjeev; Zaremba, Sam; Larsen, Christopher N.; Jen, Wei; Klem, Edward B.; Scheuermann, Richard H. 2012 2012-11-19 COMM-USE N PMC3509690 23202522.0 10.3390/v4113209 facjsy92 0.394951 Cheng_2013, UNKNOWN_2018, O'Leary_2016, Brister_2015, Montgomery_2004 Pickett_2011, Fahmi_2020
358 Al-qaness_2020 Optimization Method for Forecasting Confirmed Cases of COVID-19 in China Al-qaness, Mohammed A. A.; Ewees, Ahmed A.; Fan, Hong; Abd El Aziz, Mohamed 2020 2020-03-02 None Y PMC7141184 32131537.0 10.3390/jcm9030674 x1zq2i9h 0.394951 Saw_A_2019, Polverino_2017, Chen_2010, Lipsitch_2014, Chang_2011 Liu_Q_2020, Zareie_2020, Huang_2020, youbin_2020
359 Seo_D_2017 Methods Using Social Media and Search Queries to Predict Infectious Disease Outbreaks Seo, Dong-Woo; Shin, Soo-Yong 2017 2017-10-31 NONCOMM N PMC5688036 29181246.0 10.4258/hir.2017.23.4.343 jx8wulcg 0.394582 Santillana_2014, UNKNOWN_2010, Collier_2007, Lipsitch_2014, Lu_Q_2006 Fung_2013, Kim_L_2019, VELASCO_2014
360 Zheng_2005 Coronavirus phylogeny based on a geometric approach Zheng, Wen-Xin; Chen, Ling-Ling; Ou, Hong-Yu; Gao, Feng; Zhang, Chun-Ting 2005 2005-08-31 PMC Y PMC7111192 15890535.0 10.1016/j.ympev.2005.03.030 t89235t3 0.394523 Chang_2011, Zheng_2008, Lee_C_2017, Qi_Z_2018, Saw_A_2019 Fahmi_2020, Di_Martino_2009, Niemeyer_2018
361 Hashemian_2010 Advanced Querying Features for Disease Surveillance Systems Hashemian, Mohammad R. 2010 2010-04-09 PMC N PMC3615752 23569575.0 10.5210/ojphi.v2i1.2847 91fhb66m 0.394523 Coker_2007, Mwabu_2008, Polverino_2017, Lu_Q_2006, Zhou_2020 Freifeld_2008, Glennon_2020, May_L_2009, Chapman_2004
362 Beltrán_Lissabet_2019 AntiVPP 1.0: A portable tool for prediction of antiviral peptides Beltrán Lissabet, Jorge Félix; Belén, Lisandra Herrera; Farias, Jorge G. 2019 2019-04-30 PMC N PMC7094449 30802694.0 10.1016/j.compbiomed.2019.02.011 k935v0z9 0.394232 Lee_C_2017, Chang_2011, Naito_2007, Qi_Z_2018, Saw_A_2019 Lee_C_2019, van_der_Linden_2014, Chen_2012, Hu_H_2019
363 Isa_Irawan_2019 Application of Needleman-Wunch Algorithm to identify mutation in DNA sequences of Corona virus Isa Irawan, Mohammad; Mukhlash, Imam; Rizky, Abduh; Ririsati Dewi, Alfiana 2019 2019-05-01 COMM-USE N PMC7106772 10.1088/1742-6596/1218/1/012031 feq9grdc 0.394232 Lee_C_2017, Chang_2011, Armesto_2007, Auewarakul_2005 Ren_X_2008
364 Yamashita_2016 DGV: Dengue Genographic Viewer Yamashita, Akifumi; Sakamoto, Tetsuya; Sekizuka, Tsuyoshi; Kato, Kengo; Takasaki, Tomohiko; Kuroda, Makoto 2016 2016-06-07 COMM-USE N PMC4894901 27375595.0 10.3389/fmicb.2016.00875 e7xwb03g 0.392751 UNKNOWN_2018, Lu_P_2016, UNKNOWN_2016, O'Leary_2016 Yu_J_2019, Mohamed_2018, Lachheb_2019
365 Brownstein_2008 Surveillance Sans Frontières: Internet-Based Emerging Infectious Disease Intelligence and the HealthMap Project Brownstein, John S; Freifeld, Clark C; Reis, Ben Y; Mandl, Kenneth D 2008 2008-07-08 PMC N PMC2443186 18613747.0 10.1371/journal.pmed.0050151 548402bb 0.392090 Murray_2017, MacIntyre_2020, Johansson_2018, UNKNOWN_2010 Kobayashi_2018, Glynn_2012
366 Links_2015 Big Data is changing the battle against infectious diseases Links, MG 2015 2015-09-03 PMC N PMC5864264 29769955.0 10.14745/ccdr.v41i09a03 w962fdvq 0.391525 Mack_2007, Coker_2007, Zhou_2020, Dentico_2005, Griffiths_2010 Pfeiffer_2015, Punn_2020, Bhola_2020, Nelson_2019
367 Zhang_2015 Social network analysis on a topic‐based navigation guidance system in a public health portal Zhang, Jin; Zhai, Shanshan; Liu, Hongxia; Stevenson, Jennifer Ann 2015 2015-03-27 PMC N PMC7159533 10.1002/asi.23468 r6bl7ls4 0.391024 Bocharov_2018, Polverino_2017, Liu_Y_2016, Qi_Z_2018
368 Heine_2011 Statistical learning techniques applied to epidemiology: a simulated case-control comparison study with logistic regression Heine, John J; Land, Walker H; Egan, Kathleen M 2011 2011-01-27 COMM-USE N PMC3045299 21272346.0 10.1186/1471-2105-12-37 uv7g3liw 0.390712 Bocharov_2018, Chowell_2017, Bifolchi_2013, Chang_2011, Dai_Q_2012 Kenah_2015, Wang_2012, Chowell_2017
369 Araújo_2011 A rigorous approach to facilitate and guarantee the correctness of the genetic testing management in human genome information systems Araújo, Luciano V; Malkowski, Simon; Braghetto, Kelly R; Passos-Bueno, Maria R; Zatz, Mayana; Pu, Calton; Ferreira, João E 2011 2011-12-22 COMM-USE N PMC3287582 22369688.0 10.1186/1471-2164-12-s4-s13 dk7eij1l 0.390426 Bocharov_2018, Curcin_2005, Lu_Q_2006, Mwabu_2008, Coker_2007 Aarestrup_2012, Dwivedi_2017, Johnson_2004
370 Li_K_2010 ANDES: Statistical tools for the ANalyses of DEep Sequencing Li, Kelvin; Venter, Eli; Yooseph, Shibu; Stockwell, Timothy B; Eckerle, Lance D; Denison, Mark R; Spiro, David J; Methé, Barbara A 2010 2010-07-15 COMM-USE N PMC2921379 20633290.0 10.1186/1756-0500-3-199 2n5vetzw 0.390426 Chang_2011, Cheng_2013, Saw_A_2019, Saw_A_2019, Dai_Q_2012 Harel_2019, Twin_2013, Lewandowska_2017, Baldwin_2014
371 Lam_B_2016 Jump point detection using empirical mode decomposition Lam, Benson S.Y.; Yu, Carisa K.W.; Choy, Siu-Kai; Leung, Jacky K.T. 2016 2016-12-15 PMC N PMC7115718 10.1016/j.landusepol.2016.07.006 7zgmiwbd 0.390357 Griffiths_2010, Mack_2007, Stenseth_2008, Fielding_2014 Hui_E_2016, Xie_G_2020, Lin_T_2011, Argyroudis_2019
372 Farina_2014 Chapter 22 Integrated Sensor Systems and Data Fusion for Homeland Protection Farina, Alfonso; Ortenzi, Luciana; Ristic, Branko; Skvortsov, Alex 2014 2014-12-31 PMC N PMC7150256 10.1016/b978-0-12-396500-4.00022-3 c674xxbo 0.390318 Bocharov_2018, Zheng_2020, Coker_2007, Mwabu_2008, Nelson_2012 Fontanini_2016, Quwaider_2016
373 John_2019 Shiny Framework Based Visualization and Analytics Tool for Middle East Respiratory Syndrome John, Maya; Shaiba, Hadil 2019 2019-12-04 PMC N PMC7122755 10.1007/978-3-030-36365-9_16 r7tg0s45 0.389889 Murray_2017, Rodier_2007, Lipsitch_2014, UNKNOWN_2010, Griffiths_2010 Alfaraj_2018, Aleanizy_2017, Al-Tawfiq_2016
374 Huang_2010 SAROTUP: Scanner and Reporter of Target-Unrelated Peptides Huang, Jian; Ru, Beibei; Li, Shiyong; Lin, Hao; Guo, Feng-Biao 2010 2010-03-21 PMC N PMC2842971 20339521.0 10.1155/2010/101932 hi7z3nob 0.389687 Naito_2007, Lee_C_2017, Chang_2011, Park_2012, Welsh_2007 van_der_Linden_2014, Robinson_2013, Delhalle_2012, Rut_W_2020
375 González-Díaz_2009 QSAR for RNases and theoretic–experimental study of molecular diversity on peptide mass fingerprints of a new Leishmania infantum protein González-Díaz, Humberto; Dea-Ayuela, María A.; Pérez-Montoto, Lázaro G.; Prado-Prado, Francisco J.; Agüero-Chapín, Guillermín; Bolas-Fernández, Francisco; Vazquez-Padrón, Roberto I.; Ubeira, Florencio M. 2009 2009-07-04 PMC N PMC7088557 19578942.0 10.1007/s11030-009-9178-0 vk8n8s2q 0.389400 Saw_A_2019, Qi_Z_2018, Chang_2011, Choudhury_2011, Abou-Hamdan_2018 van_der_Linden_2014, Robinson_2013, Gotte_2019, Lee_C_2019
376 Wu_J_2020 Rapid and accurate identification of COVID-19 infection through machine learning based on clinical available blood test results Jiangpeng Wu; Pengyi Zhang; Liting Zhang; Wenbo Meng; Junfeng Li; Chongxiang Tong; Yonghong Li; Jing Cai; Zengwei Yang; Jinhong Zhu; Meie Zhao; Huirong Huang; Xiaodong Xie; Shuyan Li 2020 2020-04-06 BioRxiv Y 10.1101/2020.04.02.20051136 kjovtgua 0.389288 Polverino_2017, Zheng_2020, Bocharov_2018, Mwabu_2008, Nelson_2012 Davidson_2019, Ai_J_2020, Paradiso_2020
377 Zhou_2018 A generalized approach to predicting protein-protein interactions between virus and host Zhou, Xiang; Park, Byungkyu; Choi, Daesik; Han, Kyungsook 2018 2018-08-13 COMM-USE N PMC6101077 30367586.0 10.1186/s12864-018-4924-2 4uvezfqm 0.388426 Naito_2007, Berkhout_2006, Trobaugh_2017, Chang_2011 Goodacre_2020, Durmuş_2017, Popescu_2011, Han_L_2017
378 Pfeiffer_2015 Spatial and temporal epidemiological analysis in the Big Data era Pfeiffer, Dirk U.; Stevens, Kim B. 2015 2015-11-01 PMC N PMC7114113 26092722.0 10.1016/j.prevetmed.2015.05.012 fbl3szsu 0.388390 Zhou_2020, Mwabu_2008, Bocharov_2018, Alves_2007, Curcin_2005 Coelho_2008, Clements_2009, dos_Santos_2018
379 Wang_2018 An original design of remote robot-assisted intubation system Wang, Xinyu; Tao, Yuanfa; Tao, Xiandong; Chen, Jianglong; Jin, Yifeng; Shan, Zhengxiang; Tan, Jiyang; Cao, Qixin; Pan, Tiewen 2018 2018-09-07 COMM-USE N PMC6128927 30194353.0 10.1038/s41598-018-31607-y d557mqbp 0.388217 Vazquez_2020, Amirov_2007, Atkinson_2020, Polverino_2017 Colleti_2018, Bressan_2013, Lim_T_2017
380 Cai_Y_2013 Introduction to 3D Immersive and Interactive Learning Cai, Yiyu; Tay, Chor Ter; Ngo, Boon Keong 2013 2013-02-12 PMC N PMC7122101 10.1007/978-981-4021-90-6_1 maggme5z 0.388217 Lipsitch_2014, Murray_2017, Rodier_2007, UNKNOWN_2020 Pearson_2006, Grant_2016, Chen_2008
381 Gardner_2014 Simulate_PCR for amplicon prediction and annotation from multiplex, degenerate primers and probes Gardner, Shea N; Slezak, Tom 2014 2014-07-09 COMM-USE N PMC4226945 25005023.0 10.1186/1471-2105-15-237 zz1hkbpc 0.388145 Phillippy_2009, Yu_H_2007, Cheng_2013, Whiteford_2005 Gardner_2009, Li_K_2012
382 Bai_X_2020 Predicting COVID-19 malignant progression with AI techniques Xiang Bai; Cong Fang; Yu Zhou; Song Bai; Zaiyi Liu; Qianlan Chen; Yongchao Xu; Tian Xia; Shi Gong; Xudong Xie; Dejia Song; Ronghui Du; Chunhua Zhou; Chengyang Chen; Dianer Nie; Dandan Tu; Changzheng Zhang; Xiaowu Liu; Lixin Qin; Weiwei Chen 2020 2020-03-23 BioRxiv Y 10.1101/2020.03.20.20037325 50oy9qqy 0.388048 Zheng_2020, Polverino_2017, Nelson_2012, Nelson_2012, Bocharov_2018 Tang_2020, Wu_J_2020, Chen_2020, Zhao_2020
383 Guo_S_2020 Droplet-Transmitted Infection Risk Ranking Based on Close Proximity Interaction Guo, Shihui; Yu, Jubo; Shi, Xinyu; Wang, Hongran; Xie, Feibin; Gao, Xing; Jiang, Min 2020 2020-01-21 COMM-USE N PMC6985151 32038220.0 10.3389/fnbot.2019.00113 ki0nnptv 0.387904 Polverino_2017, Zhou_2020, Mwabu_2008, Amirov_2007, Stenseth_2008 Rabaa_2015, Mock_2019, Si_Y_2009
384 Zheng_2009 A Poisson model of sequence comparison and its application to coronavirus phylogeny Zheng, Xiaoqi; Qin, Yufang; Wang, Jun 2009 2009-02-28 PMC N PMC7094598 19073197.0 10.1016/j.mbs.2008.11.006 8qnq02gd 0.387666 Chang_2011, Zheng_2008, Saw_A_2019, Qi_Z_2018 Sheikh_2020, Kusters_1989, Li_Z_2013, Jeong_2005
385 Milano_2020 Statistical and network-based analysis of Italian COVID-19 data: communities detection and temporal evolution Marianna Milano; Mario Cannataro 2020 2020-04-22 BioRxiv Y 10.1101/2020.04.17.20068916 6n88mcbf 0.387559 Chang_2011, Lee_C_2017, Zheng_2008, Welch_2011, Qi_Z_2018
386 Al-Turaiki_2016 Building predictive models for MERS-CoV infections using data mining techniques Al-Turaiki, Isra; Alshahrani, Mona; Almutairi, Tahani 2016 2016-12-31 PMC N PMC7102847 27641481.0 10.1016/j.jiph.2016.09.007 wqa98m4v 0.387057 Zheng_2020, Polverino_2017, Nelson_2012, Nelson_2012, Chang_2011 AlMoammar_2018, Eifan_2017, Faridi_2016, Sohrab_2019
387 Hatcher_2017 Virus Variation Resource – improved response to emergent viral outbreaks Hatcher, Eneida L.; Zhdanov, Sergey A.; Bao, Yiming; Blinkova, Olga; Nawrocki, Eric P.; Ostapchuck, Yuri; Schäffer, Alejandro A.; Brister, J. Rodney 2017 2017-01-04 PMC N PMC5210549 27899678.0 10.1093/nar/gkw1065 worgd0xu 0.386705 UNKNOWN_2018, Garcia–Moliner_2013, Davaro_2013, UNKNOWN_2016 Brass_2009, Wang_2012
388 Mohammadzadeh_2017 A data mining approach for modeling churn behavior via RFM model in specialized clinics Case study: A public sector hospital in Tehran Mohammadzadeh, Mehdi; Hoseini, Zeinab Zare; Derafshi, Hamid 2017 2017-12-31 PMC N 10.1016/j.procs.2017.11.206 48jx3de2 0.386467 Coker_2007, Amirov_2007, Mwabu_2008, Griffiths_2010, Wei_B_2011 John_2019, AlMoammar_2018, Zhao_2020
389 De_Ferrari_2014 From sequence to enzyme mechanism using multi-label machine learning De Ferrari, Luna; Mitchell, John BO 2014 2014-05-19 COMM-USE N PMC4229970 24885296.0 10.1186/1471-2105-15-150 yjrs7c38 0.386438 Wang_2006, Polverino_2017, Qi_Z_2018, Saw_A_2019, Cheng_2013 Myllykoski_2017, Tremblay-Létourneau_2011
390 Tian_2007 Epidemic Alert & Response Framework and Technology Based on Spreading Dynamics Simulation Tian, Chunhua; Zhang, Xun; Ding, Wei; Cao, Rongzeng 2007 2007-01-01 PMC N PMC7120482 10.1007/978-3-540-72588-6_166 4qgjglx3 0.385348 Coker_2007, Rodier_2007, Bocharov_2018, Stenseth_2008, von_der_Gracht_2010 Chen_2018, Park_2016, Bucini_2019
391 Scheuch_2015 RIEMS: a software pipeline for sensitive and comprehensive taxonomic classification of reads from metagenomics datasets Scheuch, Matthias; Höper, Dirk; Beer, Martin 2015 2015-03-03 COMM-USE N PMC4351923 25886935.0 10.1186/s12859-015-0503-6 p6075gva 0.385015 Cheng_2013, Montgomery_2004, Yu_H_2007, Xu_Z_2009, Kurc_2006 Twin_2013, Shcherbina_2016, Morfopoulou_2015, Morfopoulou_2014
392 Kingsley_2016 Ranking Protein-Protein Docking Results using Steered Molecular Dynamics and Potential of Mean Force Calculations Kingsley, Laura J.; Esquivel-Rodríguez, Juan; Yang, Ying; Kihara, Daisuke; Lill, Markus A. 2016 2016-05-27 PMC N PMC5015890 27232548.0 10.1002/jcc.24412 04t18oqp 0.384344 Saw_A_2019, Qi_Z_2018, Chang_2011, Dai_Q_2012 Wang_2013, RAMAKRISHNA_2015, Zhang_2018, Plewczynski_2007
393 Lee_P_2011 Quantitative mapping of scientific research—The case of electrical conducting polymer nanocomposite Lee, Pei-Chun; Su, Hsin-Ning 2011 2011-01-31 PMC N PMC7126463 10.1016/j.techfore.2010.06.002 vl6gkoin 0.383585 Murray_2017, Lipsitch_2014, Nelson_2012, Nelson_2012, Griffiths_2010 Su_H_2012, Lee_P_2010, Guirao_2016, Fu_H_2013
394 González-Díaz_2009 Generalized lattice graphs for 2D-visualization of biological information González-Díaz, H.; Pérez-Montoto, L.G.; Duardo-Sanchez, A.; Paniagua, E.; Vázquez-Prieto, S.; Vilas, R.; Dea-Ayuela, M.A.; Bolas-Fernández, F.; Munteanu, C.R.; Dorado, J.; Costas, J.; Ubeira, F.M. 2009 2009-11-07 PMC N PMC7094121 19646452.0 10.1016/j.jtbi.2009.07.029 bqpsihm6 0.382933 Qi_Z_2018, Sen_D_2018, Chang_2011, Liu_Z_2008, Dai_Q_2012 Munteanu_2008, Qi_Z_2011, Liu_X_2009, Song_2005
395 Wu_J_2016 Data Decision and Transmission Based on Mobile Data Health Records on Sensor Devices in Wireless Networks Wu, Jia; Chen, Zhigang 2016 2016-06-20 PMC N PMC7088664 10.1007/s11277-016-3438-y ax09x6gk 0.381630 Coker_2007, Mwabu_2008, Wei_B_2011, Mack_2007, Zhou_2020 Wu_J_2016, Sood_2017, Li_K_2012, Huang_2013
396 Milenković_2011 Dominating Biological Networks Milenković, Tijana; Memišević, Vesna; Bonato, Anthony; Pržulj, Nataša 2011 2011-08-26 COMM-USE N PMC3162560 21887225.0 10.1371/journal.pone.0023016 ucmpbk76 0.381005 Liu_Z_2008, Welch_2011, Qi_Z_2018, Chasman_2016 Zhang_2015, Vella_2017, Järvelin_2016, Li_S_2012
397 Waagmeester_2020 A protocol for adding knowledge to Wikidata, a case report Andra Waagmeester; Egon L. Willighagen; Andrew I. Su; Martina Kutmon; Jose Emilio Labra Gayo; Daniel Fernández-Álvarez; Peter J. Schaap; Lisa M. Verhagen; Jasper J. Koehorst 2020 2020-04-07 BioRxiv Y 10.1101/2020.04.05.026336 a0bbw3er 0.380285 UNKNOWN_2010, Mack_2007, Mooney_2013, Lee_C_2017, Brister_2015 Greenbaum_2009, Collier_2007, McCrae_2008
398 Cho_V_2010 MISMIS – A comprehensive decision support system for stock market investment Cho, Vincent 2010 2010-08-31 PMC N PMC7127451 10.1016/j.knosys.2010.04.009 jaki2kyn 0.380285 Coker_2007, Mwabu_2008, Griffiths_2010, Wei_B_2011, Rodier_2007 Tung_2011, Tuyon_2016, Wu_P_2016, Chen_2005
399 Rochefort_2015 Accuracy of using automated methods for detecting adverse events from electronic health record data: a research protocol Rochefort, Christian M; Buckeridge, David L; Forster, Alan J 2015 2015-01-08 COMM-USE N PMC4296680 25567422.0 10.1186/s13012-014-0197-6 7izahzqy 0.379555 Polverino_2017, Knapp_2008, Mwabu_2008, Amirov_2007, Nelson_2012 Nikolay_2017, Alroy_2020
400 Weissenbacher_2017 Extracting geographic locations from the literature for virus phylogeography using supervised and distant supervision methods Weissenbacher, Davy; Sarker, Abeed; Tahsin, Tasnia; Scotch, Matthew; Gonzalez, Graciela 2017 2017-07-26 PMC N PMC5543364 28815119.0 g22ggyxb 0.379545 Brister_2015, Nelson_2012, Nelson_2012, Chang_2011, Lee_C_2017 Velsko_2014, Dellicour_2016, Lemey_2009, Chan_2013
401 Martin_2020 An artificial intelligence-based first-line defence against COVID-19: digitally screening citizens for risks via a chatbot Alistair Martin; Jama Nateqi; Stefanie Gruarin; Nicolas Munsch; Isselmou Abdarahmane; Bernhard Knapp 2020 2020-03-26 BioRxiv Y 10.1101/2020.03.25.008805 52nw9gxq 0.379490 Mack_2007, Nelson_2012, Nelson_2012, Stenseth_2008, Mooney_2013 Soares_2020, Wu_J_2020, Santosh_2020
402 Jalali-Heravi_2009 Shuffling multivariate adaptive regression splines and adaptive neuro-fuzzy inference system as tools for QSAR study of SARS inhibitors Jalali-Heravi, M.; Asadollahi-Baboli, M.; Mani-Varnosfaderani, A. 2009 2009-12-05 PMC N PMC7126869 19665859.0 10.1016/j.jpba.2009.07.009 bf5rct4q 0.379456 Saw_A_2019, Liao_2006, Dai_Q_2012, Höhle_2007, Qi_Z_2018 Zhou_2010, Wang_2018, Mukherjee_2011
403 Li_H_2018 Comparative studies of alignment, alignment-free and SVM based approaches for predicting the hosts of viruses based on viral sequences Li, Han; Sun, Fengzhu 2018 2018-07-03 COMM-USE N PMC6030160 29968780.0 10.1038/s41598-018-28308-x rxhygr8x 0.378129 Rice_1992, Lee_C_2017, Naito_2007, Chang_2011 Bahir_2009
404 Moon_2019 Development of a Single Leg Knee Exoskeleton and Sensing Knee Center of Rotation Change for Intention Detection Moon, Dae-Hoon; Kim, Donghan; Hong, Young-Dae 2019 2019-09-13 COMM-USE N PMC6767670 31540298.0 10.3390/s19183960 6fthj1op 0.378129 Polverino_2017, Maij_2019, Zheng_2020, Qi_Z_2018 Huang_2011, Chun_2016, Kennedy_2006
405 Fusani_2018 Active learning strategies with COMBINE analysis: new tricks for an old dog Fusani, Lucia; Cabrera, Alvaro Cortes 2018 2018-12-18 PMC N PMC7087723 30564994.0 10.1007/s10822-018-0181-3 oeokiay7 0.377359 Bocharov_2018, Qi_Z_2018, Chang_2011, Saw_A_2019, Zheng_2020 Tang_2020, Zhou_2010, Ekins_2007, Durrant_2013
406 Ehrt_2018 A benchmark driven guide to binding site comparison: An exhaustive evaluation using tailor-made data sets (ProSPECCTs) Ehrt, Christiane; Brinkjost, Tobias; Koch, Oliver 2018 2018-11-08 None N PMC6224041 30408032.0 10.1371/journal.pcbi.1006483 4y5mnok8 0.376552 Bocharov_2018, Sen_D_2018, Webb_2014, Liu_Z_2008, Liou_2013 Lamberto_2017, Zhang_2018, Mukherjee_2011
407 Liu_H_2008 A new approach to the prediction of transmembrane structures Liu, HongDe; Wang, Rui; Lu, XiaoQuan; Chen, Jing; Liu, Xiuhui; Ding, Lan 2008 2008-05-23 PMC N PMC7088861 10.1007/s11434-008-0055-5 n10ia3j3 0.375883 UNKNOWN_1987, Qi_Z_2018, Saw_A_2019, Lee_C_2017, Wu_G_2005 Wang_2013, Cai_C_2006, RAMAKRISHNA_2015, Choo_2009
408 Arji_2019 Fuzzy logic approach for infectious disease diagnosis: A methodical evaluation, literature and classification Arji, Goli; Ahmadi, Hossein; Nilashi, Mehrbakhsh; A. Rashid, Tarik; Hassan Ahmed, Omed; Aljojo, Nahla; Zainol, Azida 2019 2019-12-31 PMC N PMC7115764 10.1016/j.bbe.2019.09.004 mxdlii77 0.375441 Bocharov_2018, Duan_2015, Zheng_2020, Lipsitch_2014, Murray_2017 Vynograd_2014, Chakraborty_2014, Taniguchi_2008, Ali_A_2020
409 Budzan_2013 Face and eyes localization algorithm in thermal images for temperature measurement of the inner canthus of the eyes Budzan, Sebastian; Wyżgolik, Roman 2013 2013-09-30 PMC N PMC7110491 10.1016/j.infrared.2013.05.007 flgc5l04 0.374085 Polverino_2017, Qi_Z_2018, Dai_Q_2012, Bocharov_2018, Mendizabal-Ruiz_2018 Zheng_2020, Bandalakunta_Gururajarao_2019, Dwith_Chenna_2018, Faust_2014
410 Sahli_2012 Arapan-S: a fast and highly accurate whole-genome assembly software for viruses and small genomes Sahli, Mohammed; Shibuya, Tetsuo 2012 2012-05-16 COMM-USE N PMC3441218 22591859.0 10.1186/1756-0500-5-243 nz4qpumr 0.373774 Lee_C_2017, Chang_2011, Cheng_2013, Deng_2015, Saw_A_2019 Wang_2010, Lauber_2013
411 Fang_2020 CT radiomics can help screen the Coronavirus disease 2019 (COVID-19): a preliminary study Fang, Mengjie; He, Bingxi; Li, Li; Dong, Di; Yang, Xin; Li, Cong; Meng, Lingwei; Zhong, Lianzhen; Li, Hailin; Li, Hongjun; Tian, Jie 2020 2020-04-15 PMC Y PMC7166002 10.1007/s11432-020-2849-3 p9w9fwak 0.373709 Polverino_2017, Qi_Z_2018, Chang_2011, Feng_2010, Lee_C_2017
412 Song_2020 Prospect and application of Internet of Things technology for prevention of SARIs Song, Yuanlin; Jiang, Jinjun; Wang, Xun; Yang, Dawei; Bai, Chunxue 2020 2020-12-31 PMC N PMC7148604 10.1016/j.ceh.2020.02.001 sqyhzxty 0.373654 Mwabu_2008, Wei_B_2011, Coker_2007, Knapp_2008, Amirov_2007 Sood_2017, Sareen_2016, Wu_J_2016, Zhu_H_2020
413 Vila_2018 (13)C Chemical Shifts in Proteins: A Rich Source of Encoded Structural Information Vila, Jorge A.; Arnautova, Yelena A. 2018 2018-07-20 PMC N PMC7123919 10.1007/978-3-319-95843-9_20 gytg4iku 0.373636 Liu_Z_2008, Qi_Z_2018, Kirillova_2009, Plewczyński_2008, Chang_2011 Vila_2014, Lee_G_2012, Buller_2012
414 Que_J_2012 Spatial and Temporal Algorithm Evaluation for Detecting Over-The-Counter Thermometer Sale Increases during 2009 H1N1 Pandemic Que, Jialan; Tsui, Fu-Chiang 2012 2012-05-17 PMC N PMC3615801 23569624.0 10.5210/ojphi.v4i1.3915 weoxwksv 0.373021 Bocharov_2018, Lemey_2009, Chang_2011, Stenseth_2008, Lee_C_2017 Takahashi_2008, Izakian_2012, Tokars_2009, Chamberlain_2020
415 Nooij_2018 Overview of Virus Metagenomic Classification Methods and Their Biological Applications Nooij, Sam; Schmitz, Dennis; Vennema, Harry; Kroneman, Annelies; Koopmans, Marion P. G. 2018 2018-04-23 COMM-USE N PMC5924777 29740407.0 10.3389/fmicb.2018.00749 s5k59eq8 0.371714 Curcin_2005, Johnson_2018, Alves_2007, Zhou_2020, Awaisu_2019 Davidson_2019, Dacheux_2014, Li_C_2020
416 Cho_M_2019 Prediction of cross-species infection propensities of viruses with receptor similarity Cho, Myeongji; Son, Hyeon Seok 2019 2019-09-30 PMC N PMC7106226 31026604.0 10.1016/j.meegid.2019.04.016 55lkfivh 0.371423 Chang_2011, Wang_2013, Qi_Z_2018, Cheng_2012 Ren_X_2008, Brierley_2019, Tibayrenc_2015, Brierley_2019
417 Cinnamon_2016 Evidence and future potential of mobile phone data for disease disaster management Cinnamon, Jonathan; Jones, Sarah K.; Adger, W. Neil 2016 2016-10-31 PMC N PMC7127132 10.1016/j.geoforum.2016.07.019 t2y62bg3 0.371102 Mwabu_2008, Knapp_2008, Zhou_2020, Coker_2007, Wei_B_2011 Xi_Y_2019, Hawryluck_2005, Leung_2008
418 Yang_2007 IDBD: Infectious Disease Biomarker Database Yang, In Seok; Ryu, Chunsun; Cho, Ki Joon; Kim, Jin Kwang; Ong, Swee Hoe; Mitchell, Wayne P.; Kim, Bong Su; Oh, Hee-Bok; Kim, Kyung Hyun 2007 2007-11-03 NONCOMM N PMC2238845 17982173.0 10.1093/nar/gkm925 8cixsjrf 0.370890 Gupta_2009, Collier_2007, Lu_Q_2006, Sharon_2010, Curcin_2005 McGarvey_2009, Mejias_2014, Zav'yalov_2019, Oved_2015
419 Bonham_2009 Modeling tourism: A fully identified VECM approach Bonham, Carl; Gangnes, Byron; Zhou, Ting 2009 2009-09-30 PMC N PMC7114862 10.1016/j.ijforecast.2008.11.014 7ou1uqis 0.370632 Murray_2017, Rodier_2007, Lipsitch_2014, Gostin_2016, Griffiths_2010 Lee_C_2008, Lim_C_2009, Andraz_2016, Guirao_2016
420 Dawson_2007 Prediction of RNA Pseudoknots Using Heuristic Modeling with Mapping and Sequential Folding Dawson, Wayne K.; Fujiwara, Kazuya; Kawai, Gota 2007 2007-09-19 None N PMC1975678 17878940.0 10.1371/journal.pone.0000905 9zm4per4 0.370561 Polverino_2017, Chang_2011, Qi_Z_2018, Liu_Z_2008 Guo_Y_2013, Sperschneider_2012
421 Ajayi_2019 Forecasting herd-level porcine epidemic diarrhea (PED) frequency trends in Ontario (Canada) Ajayi, Toluwalope; Dara, Rozita; Poljak, Zvonimir 2019 2019-03-01 PMC N PMC7125872 30771890.0 10.1016/j.prevetmed.2019.01.005 f9w310tp 0.369972 batista_2020, Chen_2010, Saw_A_2019, Höhle_2007, Li_C_2018 Dortmans_2018, YAMANE_2016, Bertasio_2016, Lee_C_2015
422 Balasubramanian_2020 Automatic Identification of SARS Coronavirus using Compression-Complexity Measures Karthi Balasubramanian; Nithin Nagaraj 2020 2020-03-27 BioRxiv Y 10.1101/2020.03.24.006007 ljli6a2z 0.368749 Lee_C_2017, Chang_2011, Cheng_2013, Sen_D_2018, Brister_2015 Phan_2018, Cleemput_2020, Lopez-Rincon_2020, Qin_E_2003
423 Hu_L_2011 Predicting Biological Functions of Compounds Based on Chemical-Chemical Interactions Hu, Le-Le; Chen, Chen; Huang, Tao; Cai, Yu-Dong; Chou, Kuo-Chen 2011 2011-12-29 COMM-USE N PMC3248422 22220213.0 10.1371/journal.pone.0029491 0mn1gbll 0.368138 Qi_Z_2018, Chang_2011, Lee_C_2017, Saw_A_2019, Polverino_2017 Wang_2018, Su_J_2014, Xing_2014
424 Catanzaro_2013 A mixed integer linear programming model to reconstruct phylogenies from single nucleotide polymorphism haplotypes under the maximum parsimony criterion Catanzaro, Daniele; Ravi, Ramamoorthi; Schwartz, Russell 2013 2013-01-23 COMM-USE N PMC3599976 23343437.0 10.1186/1748-7188-8-3 thtsulcy 0.367504 Polverino_2017, Chang_2011, Bocharov_2018, Qi_Z_2018, Lee_C_2017 Tibayrenc_2015, Kepler_2010, Wang_2013, Hilton_2018
425 Pérez_2016 Glyco3D: A Suite of Interlinked Databases of 3D Structures of Complex Carbohydrates, Lectins, Antibodies, and Glycosyltransferases Pérez, Serge; Sarkar, Anita; Rivet, Alain; Drouillard, Sophie; Breton, Christelle; Imberty, Anne 2016 2016-09-08 PMC N PMC7121943 10.1007/978-4-431-56454-6_7 1c515h51 0.367288 Wang_2006, Montgomery_2004, Cheng_2013, Gardner_2008, UNKNOWN_2018 McDowell_1988, Satoh_2015, Cao_L_2018, Tong_2009
426 He_Y_2010 Vaxign: The First Web-Based Vaccine Design Program for Reverse Vaccinology and Applications for Vaccine Development He, Yongqun; Xiang, Zuoshuang; Mobley, Harry L. T. 2010 2010-07-04 PMC N PMC2910479 20671958.0 10.1155/2010/297505 wczw4vn1 0.367288 Naito_2007, Chang_2011, Lee_C_2017, Rice_1992 Kumar_2019, Chen_2007
427 Santosh_2020 AI-Driven Tools for Coronavirus Outbreak: Need of Active Learning and Cross-Population Train/Test Models on Multitudinal/Multimodal Data Santosh, K. C. 2020 2020-03-18 PMC Y PMC7087612 32189081.0 10.1007/s10916-020-01562-1 j97ugs3y 0.366984 Duan_2015, Mwabu_2008, Walsh_2018, von_der_Gracht_2010, Mack_2007 Punn_2020, AlMoammar_2018, Andre_2020, Wu_J_2020
428 Collier_2007 A multilingual ontology for infectious disease surveillance: rationale, design and challenges Collier, Nigel; Kawazoe, Ai; Jin, Lihua; Shigematsu, Mika; Dien, Dinh; Barrero, Roberto A.; Takeuchi, Koichi; Kawtrakul, Asanee 2007 2007-06-26 PMC N PMC7087677 10.1007/s10579-007-9019-7 4524vg4x 0.366890 Curcin_2005, Coker_2007, UNKNOWN_2010, Wei_B_2011 Keller_2009, Ramshaw_2019, Rabaa_2015
429 Kumar_2020 Accurate Prediction of COVID-19 using Chest X-Ray Images through Deep Feature Learning model with SMOTE and Machine Learning Classifiers Rahul Kumar; Ridhi Arora; Vipul Bansal; Vinodh J Sahayasheela; Himanshu Buckchash; Javed Imran; Narayanan Narayanan; Ganesh N Pandian; Balasubramanian Raman 2020 2020-04-17 BioRxiv Y 10.1101/2020.04.13.20063461 59ghorzf 0.365703 Rodier_2007, Polverino_2017, Bocharov_2018, UNKNOWN_2010, Lee_C_2017
430 Cheng_2012 Segmentation of DNA using simple recurrent neural network Cheng, Wei-Chen; Huang, Jau-Chi; Liou, Cheng-Yuan 2012 2012-02-29 PMC N PMC7126336 10.1016/j.knosys.2011.09.001 7qc1lqyp 0.364481 Chang_2011, Qi_Z_2018, Lee_C_2017, Wang_2013 Goldberg_1991
431 Johnson_2019 An Ecological Framework for Modeling the Geography of Disease Transmission Johnson, Erica E.; Escobar, Luis E.; Zambrana-Torrelio, Carlos 2019 2019-07-31 PMC N PMC7114676 31078330.0 10.1016/j.tree.2019.03.004 wcpc32w4 0.364360 Kozakiewicz_2018, Grassly_2008, UNKNOWN_2004, Duan_2015 Peterson_2008, Vander_Wal_2014, Becker_2019, Hayman_2013
432 Zhang_2014 A Brief Review: The Z-curve Theory and its Application in Genome Analysis Zhang, Ren; Zhang, Chun-Ting 2014 2014-04-23 NONCOMM N PMC4009844 24822026.0 10.2174/1389202915999140328162433 f1j6uhmj 0.364199 Chang_2011, Dai_Q_2012, Lee_C_2017, Zheng_2008, Qi_Z_2018 Singleton_2018, Zhang_2011
433 Coelho_2008 Epigrass: a tool to study disease spread in complex networks Coelho, Flávio C; Cruz, Oswaldo G; Codeço, Cláudia T 2008 2008-02-26 COMM-USE N PMC2275240 18302744.0 10.1186/1751-0473-3-3 397hp1yt 0.364143 Bocharov_2018, Qi_Z_2018, Liou_2013, Chang_2011, Gamermann_2014 Groendyke_2012, Nelson_2019, Bjørnstad_2019, Zhong_2009
434 van_Weezep_2019 PCR diagnostics: In silico validation by an automated tool using freely available software programs van Weezep, Erik; Kooi, Engbert A.; van Rijn, Piet A. 2019 2019-08-31 PMC N PMC7113775 31095975.0 10.1016/j.jviromet.2019.05.002 ajzk86rq 0.363934 Chang_2011, Lee_C_2017, Rajagopala_2015, Montgomery_2004, Deng_2015 Anis_2018, Lewandowska_2017
435 Yu_C_2018 Acral melanoma detection using a convolutional neural network for dermoscopy images Yu, Chanki; Yang, Sejung; Kim, Wonoh; Jung, Jinwoong; Chung, Kee-Yang; Lee, Sang Wook; Oh, Byungho 2018 2018-03-07 COMM-USE N PMC5841780 29513718.0 10.1371/journal.pone.0193321 u4ybz8ds 0.363395 Polverino_2017, Qi_Z_2018, Saw_A_2019, Goradia_1988, Feng_2010 Zeeneldin_2018, Tzen_2007, Fu_M_2020, Wang_2020
436 Zhang_2018 Exploring the Binding Mechanism between Human Profilin (PFN1) and Polyproline-10 through Binding Mode Screening Leili Zhang; David R. Bell; Binquan Luan; Ruhong Zhou 2018 2018-09-16 BioRxiv N 10.1101/418830 40pe21lm 0.362848 Qi_Z_2018, Chang_2011, Saw_A_2019, Polverino_2017, Plewczyński_2008 Wang_2013, Yap_Y_2005, Niu_C_2008, Du_Q_2004
437 Lee_B_2009 Identification of protein functions using a machine-learning approach based on sequence-derived properties Lee, Bum Ju; Shin, Moon Sun; Oh, Young Joon; Oh, Hae Seok; Ryu, Keun Ho 2009 2009-08-09 COMM-USE N PMC2731080 19664241.0 10.1186/1477-5956-7-27 85fqseal 0.362640 Chang_2011, Qi_Z_2018, Saw_A_2019, Dai_Q_2012, Lee_C_2017 Cai_C_2006, Han_L_2005
438 Qiang_2020 Using the spike protein feature to predict infection risk and monitor the evolutionary dynamic of coronavirus Qiang, Xiao-Li; Xu, Peng; Fang, Gang; Liu, Wen-Bin; Kou, Zheng 2020 2020-03-25 COMM-USE Y PMC7093988 32209118.0 10.1186/s40249-020-00649-8 llv3cvdr 0.362587 Lee_C_2017, Chang_2011, Wang_2007, Wang_2013, Callison_1999 Niemeyer_2018, Sohrab_2019, Jeong_2005, Ren_X_2008
439 Jin_S_2014 Characterizing and controlling the inflammatory network during influenza A virus infection Jin, Suoqin; Li, Yuanyuan; Pan, Ruangang; Zou, Xiufen 2014 2014-01-21 None N PMC3896911 24445954.0 10.1038/srep03799 0y80k5kw 0.362293 Chasman_2016, Haasnoot_2010, Trobaugh_2017, Berkhout_2006, Menachery_2013 McDermott_2016, Song_2018, Mitchell_2019, Maelfait_2012
440 Raj_A_2011 Identifying Hosts of Families of Viruses: A Machine Learning Approach Raj, Anil; Dewar, Michael; Palacios, Gustavo; Rabadan, Raul; Wiggins, Christopher H. 2011 2011-12-09 COMM-USE N PMC3235098 22174744.0 10.1371/journal.pone.0027631 e17qi1v2 0.362115 Chang_2011, Lee_C_2017, Brister_2015, Liou_2013 Brierley_2019, Brierley_2019, Dacheux_2014, Mock_2019
441 Schäffer_2019 VADR: validation and annotation of virus sequence submissions to GenBank Alejandro A Schäffer; Eneida Hatcher; Linda Yankie; Lara Shonkwiler; J Rodney Brister; Ilene Karsch-Mizrachi; Eric P Nawrocki 2019 2019-11-22 BioRxiv N 10.1101/852657 besvz92f 0.362088 UNKNOWN_2018, Cheng_2013, O'Leary_2016, UNKNOWN_2016 Shean_2019, Godeny_1990, Meulenberg_1995
442 Wagner_2020 Real-time biomedical knowledge synthesis of the exponentially growing world wide web using unsupervised neural networks Tyler Wagner; Samir Awasthi; Gayle Wittenberg; AJ Venkatakrishnan; Dan Tarjan; Anuli Anyanwu-Ofili; Andrew Badley; John Halamka; Christopher Flores; Najat Khan; Rakesh Barve; Venky Soundararajan 2020 2020-04-04 BioRxiv N 10.1101/2020.04.03.020602 tnoybbfx 0.360173 Dentico_2005, Curcin_2005, Gupta_2009, UNKNOWN_2004 Venkatakrishnan_2020, Joshi_2020, Ray_B_2016
443 Koning_2013 Nanofabrication of a gold fiducial array on specimen support for electron tomography Koning, Roman I.; Kutchoukov, Vladimir G.; Hagen, Cornelis W.; Koster, Abraham J. 2013 2013-12-31 PMC N PMC7111319 23954496.0 10.1016/j.ultramic.2013.06.015 m1i5m19t 0.360173 Polverino_2017, Wang_2011, DiMaio_2016, Kylberg_2009 Hawes_2014, Tseng_2016, Snijder_2016, Snijder_2017
444 Dinkel_2011 ELM—the database of eukaryotic linear motifs Dinkel, Holger; Michael, Sushama; Weatheritt, Robert J.; Davey, Norman E.; Van Roey, Kim; Altenberg, Brigitte; Toedt, Grischa; Uyar, Bora; Seiler, Markus; Budd, Aidan; Jödicke, Lisa; Dammert, Marcel A.; Schroeter, Christian; Hammer, Maria; Schmidt, Tobias; Jehl, Peter; McGuigan, Caroline; Dymecka, Magdalena; Chica, Claudia; Luck, Katja; Via, Allegra; Chatr-aryamontri, Andrew; Haslam, Niall; Grebnev, Gleb; Edwards, Richard J.; Steinmetz, Michel O.; Meiselbach, Heike; Diella, Francesca; Gibson, Toby J. 2011 2011-11-21 NONCOMM N PMC3245074 22110040.0 10.1093/nar/gkr1064 ppzxvykb 0.358622 Ivarsson_2012, Kinjo_2012, Liu_Z_2008, Wang_2006 Myllykoski_2017
445 Zhu_H_2020 IoT PCR for pandemic disease detection and its spread monitoring Zhu, Hanliang; Podesva, Pavel; Liu, Xiaocheng; Zhang, Haoqing; Teply, Tomas; Xu, Ying; Chang, Honglong; Qian, Airong; Lei, Yingfeng; Li, Yu; Niculescu, Andreea; Iliescu, Ciprian; Neuzil, Pavel 2020 2020-01-15 None N PMC7125887 10.1016/j.snb.2019.127098 ityhcak7 0.358477 Lu_Q_2006, Curcin_2005, Mwabu_2008, Collier_2007, Shaw_2012 da_Silva_2019, Malik_2019, Fung_2019
446 Shao_2007 Structure‐Based Design and Synthesis of Highly Potent SARS‐CoV 3CL Protease Inhibitors Shao, Yi‐Ming; Yang, Wen‐Bin; Peng, Hung‐Pin; Hsu, Min‐Feng; Tsai, Keng‐Chang; Kuo, Tun‐Hsun; Wang, Andrew H.‐J.; Liang, Po‐Huang; Lin, Chun‐Hung; Yang, An‐Suei; Wong, Chi‐Huey 2007 2007-08-23 PMC N PMC7162026 17722121.0 10.1002/cbic.200700254 voem879q 0.358460 Qi_Z_2018, Choudhury_2011, Largo_2016, Abou-Hamdan_2018, David_2013
447 Vella_2017 From protein-protein interactions to protein co-expression networks: a new perspective to evaluate large-scale proteomic data Vella, Danila; Zoppis, Italo; Mauri, Giancarlo; Mauri, Pierluigi; Di Silvestre, Dario 2017 2017-03-20 COMM-USE N PMC5359264 28477207.0 10.1186/s13637-017-0059-z gmw88elf 0.358068 UNKNOWN_2004, Bocharov_2018, van_Kampen_2015, Liu_Z_2008 Li_S_2012, Xiao_2017, Abraham_2015, Gibbs_2013
448 Tithi_2017 Fast Virome Explorer: A Pipeline for Virus and Phage Identification and Abundance Profiling in Metagenomics Data Saima Sultana Tithi; Roderick V. Jensen; Liqing Zhang 2017 2017-10-02 BioRxiv N 10.1101/196998 uw76y16g 0.357932 Tithi_2018, Djikeng_2009, Brister_2015, Lee_C_2017 Tithi_2018, Li_C_2020, Anderson_2020, Dacheux_2014
449 Zhao_2020 Spreading predictability in complex networks Na Zhao; Jian Wang; Yong Yu; Jun-Yan Zhao; Duan-Bing Chen 2020 2020-01-28 BioRxiv N 10.1101/2020.01.28.922757 635lbedk 0.356921 Bocharov_2018, Polverino_2017, Mack_2007, Looker_2006 Scarpino_2019, Yuan_2015, Wu_Q_2014, Liu_Y_2016
450 Lemmin_2019 Glycosylator: a Python framework for the rapid modeling of glycans Lemmin, Thomas; Soto, Cinque 2019 2019-10-22 COMM-USE N PMC6806574 31640540.0 10.1186/s12859-019-3097-6 v5uiuhih 0.356639 Montgomery_2004, Wang_2006, Lu_Q_2006, Qi_Z_2018, Liao_2006 Cao_L_2018, Besançon_2020, McDowell_1988, Nagae_2018
451 Wu_J_2016 Reducing Energy Consumption and Overhead Based on Mobile Health in Big Data Opportunistic Networks Wu, Jia; Chen, Zhigang 2016 2016-08-13 PMC N PMC7088852 10.1007/s11277-016-3610-4 odnlt6fr 0.356300 Mack_2007, Coker_2007, Mwabu_2008, Wei_B_2011, Ropeik_2004 Wu_J_2016, Hu_J_2016, Sood_2017, Sareen_2016
452 Bao_Y_2008 Virus Classification by Pairwise Sequence Comparison (PASC) Bao, Y.; Kapustin, Y.; Tatusova, T. 2008 2008-12-31 PMC N 10.1016/b978-012374410-4.00710-x aa88gtzr 0.355655 Chang_2011, Lee_C_2017, Brister_2015, Wang_2013
453 Meltzer_2004 Multiple Contact Dates and SARS Incubation Periods Meltzer, Martin I. 2004 2004-02-23 PMC N PMC3322923 15030684.0 10.3201/eid1002.030426 13xmmin1 0.354560 Zheng_2020, Polverino_2017, Bifolchi_2013, Lee_C_2017 Ha_L_2004, ZENG_2009, Li_P_2020
454 Aziz_2012 SEED Servers: High-Performance Access to the SEED Genomes, Annotations, and Metabolic Models Aziz, Ramy K.; Devoid, Scott; Disz, Terrence; Edwards, Robert A.; Henry, Christopher S.; Olsen, Gary J.; Olson, Robert; Overbeek, Ross; Parrello, Bruce; Pusch, Gordon D.; Stevens, Rick L.; Vonstein, Veronika; Xia, Fangfang 2012 2012-10-24 None N PMC3480482 23110173.0 10.1371/journal.pone.0048053 vret3sh1 0.354128 Cheng_2013, Brister_2015, Montgomery_2004, Lu_Q_2006 Wang_2010, Cheng_2013, Francis_2016
455 Sturm_2020 Scirpy: A Scanpy extension for analyzing single-cell T-cell receptor sequencing data Gregor Sturm; Tamas G Szabo; Georgios Fotakis; Marlene Haider; Dietmar Rieder; Zlatko Trajanoski; Francesca Finotello 2020 2020-04-13 BioRxiv Y 10.1101/2020.04.10.035865 q6w8zgc3 0.353750 Montgomery_2004, May_E_2016, Kurc_2006, Janjić_2012 Anderson_2020, Green_2017, Han_L_2020, Shabman_2016
456 Salg_2020 A globally available COVID-19 - Template for clinical imaging studies Gabriel Alexander Salg; Maria Katharina Ganten; Matthias Baumhauer; Claus Peter Heussel; Jens Kleesiek 2020 2020-04-07 BioRxiv Y 10.1101/2020.04.02.20048793 5s30ihv3 0.353700 Curcin_2005, Nelson_2012, Nelson_2012, Mwabu_2008, Knapp_2008 Miao_2020, Zhu_Y_2020, Wang_2020
457 Chu_H_2008 A Delphi-based approach to developing expert systems with the cooperation of multiple experts Chu, Hui-Chun; Hwang, Gwo-Jen 2008 2008-05-31 PMC N PMC7127119 10.1016/j.eswa.2007.05.034 jsyuh368 0.353588 Bocharov_2018, Zheng_2020, UNKNOWN_2019, Mooney_2013, Ropeik_2004 Serrano-Guerrero_2020, Dorasamy_2013, Matsuzaw_2011, Bdeir_2012
458 Wu_T_2020 Open-source analytics tools for studying the COVID-19 coronavirus outbreak Tianzhi Wu; Xijin Ge; Guangchuang Yu; Erqiang Hu 2020 2020-02-27 BioRxiv N 10.1101/2020.02.25.20027433 qtrquuvv 0.352869 Zhou_2020, UNKNOWN_2010, MacIntyre_2020, Griffiths_2010, Santillana_2014 de_Sousa_2014, Hilton_2020, Niemeyer_2018
459 Soontornpipit_2016 Development of the Electronic Surveillance Monitoring System on Web Applications Soontornpipit, Pichitpong; Viwatwongkasem, Chukiat; Taratep, Chanvit; Teerawat, Watcharawan; Vanitchatchavan, Prachuab 2016 2016-12-31 PMC N 10.1016/j.procs.2016.05.110 3uz42vx8 0.352093 Rodier_2007, Murray_2017, Coker_2007, Mwabu_2008, Wei_B_2011 Yang_2011, Tsui_2003, Rajatonirina_2014
460 Frenz_2019 Automatically Fixing Errors in Glycoprotein Structures with Rosetta Frenz, Brandon; Rämisch, Sebastian; Borst, Andrew J.; Walls, Alexandra C.; Adolf-Bryfogle, Jared; Schief, William R.; Veesler, David; DiMaio, Frank 2019 2019-01-02 None N PMC6616339 30344107.0 10.1016/j.str.2018.09.006 qu4enz7m 0.351080 DiMaio_2016, Qi_Z_2018, Dawson_2007, CAO_S_2012 Effantin_2016, Walls_2016, Jonić_2016
461 Sathiamurthy_2005 An ontology for immune epitopes: application to the design of a broad scope database of immune reactivities Sathiamurthy, Muthuraman; Peters, Bjoern; Bui, Huynh-Hoa; Sidney, John; Mokili, John; Wilson, Stephen S; Fleri, Ward; McGuinness, Deborah L; Bourne, Philip E; Sette, Alessandro 2005 2005-09-20 COMM-USE N PMC1287064 16305755.0 10.1186/1745-7580-1-2 zwbc7nnn 0.350765 Lester_2014, Montefiori_2007, Polverino_2017, Kolls_2012, Chasman_2016 Lollier_2011, Xue_G_2013, Hua_R_2013, Ignjatovic_2005
462 Hou_Z_2016 Linear Quantitative Profiling Method Fast Monitors Alkaloids of Sophora Flavescens That Was Verified by Tri-Marker Analyses Hou, Zhifei; Sun, Guoxiang; Guo, Yong 2016 2016-08-16 COMM-USE N PMC4987015 27529425.0 10.1371/journal.pone.0161146 60udcsa7 0.350456 Chang_2011, Qi_Z_2018, Saw_A_2019, Dai_Q_2012, Feng_2010 Fang_2019, Xing_2014, Subramaniam_2014
463 Xie_H_2014 3D QSAR Studies, Pharmacophore Modeling and Virtual Screening on a Series of Steroidal Aromatase Inhibitors Xie, Huiding; Qiu, Kaixiong; Xie, Xiaoguang 2014 2014-11-14 COMM-USE N PMC4264204 25405729.0 10.3390/ijms151120927 afx7hacm 0.350456 Saw_A_2019, Zhou_2011, Dai_Q_2012, Qi_Z_2018 Thanigaimalai_2013, de_Oliveira_2013
464 Sarkar_2020 A Machine Learning Model Reveals Older Age and Delayed Hospitalization as Predictors of Mortality in Patients with COVID-19 Jit Sarkar; Partha Chakrabarti 2020 2020-03-30 BioRxiv Y 10.1101/2020.03.25.20043331 0agldesf 0.348702 Lipsitch_2014, Walker_2010, Mondor_2012, UNKNOWN_2010, Afilalo_2012 Guo_L_2019, Alfaraj_2019, Zhou_2020, Andre_2020
465 Kao_H_2005 A diagnostic reasoning and optimal treatment model for bacterial infections with fuzzy information Kao, Han-Ying; Li, Han-Lin 2005 2005-01-31 PMC N PMC7125802 15639707.0 10.1016/j.cmpb.2004.08.003 b265mbwp 0.348420 Bocharov_2018, Polverino_2017, Chowell_2017, Lloyd_2009, Chang_2011 Arji_2019, El-Azeem_2013, UNKNOWN_1985
466 Torres-Urquidy_2009 Detection of Disease Outbreaks by the Use of Oral Manifestations Torres-Urquidy, M.H.; Wallstrom, G.; Schleyer, T.K.L. 2009 2009-01-01 PMC N PMC3144048 19131324.0 10.1177/0022034508327546 1grzm2lq 0.347943 Brucker_2020, Walker_2010, Mondor_2012, Guery_2014, Li_L_2014 Pennisi_2015, Pusterla_2013
467 Bai_L_2020 Chinese experts’ consensus on the Internet of Things-aided diagnosis and treatment of coronavirus disease 2019 (COVID-19) Bai, Li; Yang, Dawei; Wang, Xun; Tong, Lin; Zhu, Xiaodan; Zhong, Nanshan; Bai, Chunxue; Powell, Charles A.; Chen, Rongchang; Zhou, Jian; Song, Yuanlin; Zhou, Xin; Zhu, Huili; Han, Baohui; Li, Qiang; Shi, Guochao; Li, Shengqing; Wang, Changhui; Qiu, Zhongmin; Zhang, Yong; Xu, Yu; Liu, Jie; Zhang, Ding; Wu, Chaomin; Li, Jing; Yu, Jinming; Wang, Jiwei; Dong, Chunling; Wang, Yaoli; Wang, Qi; Zhang, Lichuan; Zhang, Min; Ma, Xia; Zhao, Lin; Yu, Wencheng; Xu, Tao; Jin, Yang; Wang, Xiongbiao; Wang, Yuehong; Jiang, Yan; Chen, Hong; Xiao, Kui; Zhang, Xiaoju; Song, Zhenju; Zhang, Ziqiang; Wu, Xueling; Sun, Jiayuan; Shen, Yao; Ye, Maosong; Tu, Chunlin; Jiang, Jinjun; Yu, Hai; Tan, Fei 2020 2020-12-31 PMC Y PMC7148716 10.1016/j.ceh.2020.03.001 wyz5jyjh 0.347558 Coker_2007, Polverino_2017, Amirov_2007, Knapp_2008, Mwabu_2008 Ho_L_2020
468 Chan_2010 Surveillance and Epidemiology of Infectious Diseases using Spatial and Temporal Lustering Methods Chan, Ta-Chien; King, Chwan-Chuen 2010 2010-07-27 PMC N PMC7120538 10.1007/978-1-4419-6892-0_10 81wig9xh 0.347394 Bocharov_2018, Gupta_2009, Coker_2007, Sen_D_2018 Cao_Z_2010, Wen_T_2007, Neri_2014, Clements_2009
469 Chapman_2004 Fever detection from free-text clinical records for biosurveillance Chapman, Wendy W; Dowling, John N; Wagner, Michael M 2004 2004-04-30 PMC N PMC7128853 15120658.0 10.1016/j.jbi.2004.03.002 vkjz1orh 0.347075 Laurens_2019, Naga_2015, Atkinson_2020, Choi_2012 Glennon_2020, Le-Viet_2019, Baier_2018, Raffetin_2020
470 Kalantar_2020 IDseq – An Open Source Cloud-based Pipeline and Analysis Service for Metagenomic Pathogen Detection and Monitoring Katrina L. Kalantar; Tiago Carvalho; Charles F.A. de Bourcy; Boris Dimitrov; Greg Dingle; Rebecca Egger; Julie Han; Olivia B. Holmes; Yun-Fang Juan; Ryan King; Andrey Kislyuk; Maria Mariano; Lucia V. Reynoso; David Rissato Cruz; Jonathan Sheu; Jennifer Tang; James Wang; Mark A. Zhang; Emily Zhong; Vida Ahyong; Sreyngim Lay; Sophana Chea; Jennifer A. Bohl; Jessica E. Manning; Cristina M. Tato; Joseph L. DeRisi 2020 2020-04-09 BioRxiv Y 10.1101/2020.04.07.030551 oinumv1z 0.346901 Montgomery_2004, Lu_Q_2006, Kurc_2006, Cheng_2013, Brister_2015 Naccache_2014, Kilianski_2015, McGarvey_2009, Tausch_2018
471 Jiang_2010 The calculation of information and organismal complexity Jiang, Yun; Xu, Cunshuan 2010 2010-10-12 COMM-USE N PMC2973933 20937149.0 10.1186/1745-6150-5-59 5z3s5pjl 0.345950 Chang_2011, Qi_Z_2018, Liou_2013, Bocharov_2018, Polverino_2017 Koonin_2013, Walker_2015, Walker_2011
472 Webb_2014 Comparative Modeling of Drug Target Proteins☆ Webb, B.; Eswar, N.; Fan, H.; Khuri, N.; Pieper, U.; Dong, G.Q.; Sali, A. 2014 2014-12-31 PMC N PMC7157477 10.1016/b978-0-12-409547-2.11133-3 d66rz6dc 0.345450 Eswar_2007, Bocharov_2018, Sen_D_2018, Johnson_2018 Eswar_2007, Ramajayam_2010, Thanigaimalai_2013, Tang_2020
473 Kizza_2012 Computer Network Vulnerabilities Kizza, Joseph Migga 2012 2012-07-31 PMC N PMC7123447 10.1007/978-1-4471-4543-1_4 vdddhcuq 0.345450 Mack_2007, Looker_2006, Coker_2007, Kizza_2017 Kizza_2017, Kizza_2014, Smith_2016
474 Majumdar_2018 Kyasanur Forest Disease Classification Framework Using Novel Extremal Optimization Tuned Neural Network in Fog Computing Environment Majumdar, Abhishek; Debnath, Tapas; Sood, Sandeep K.; Baishnab, Krishna Lal 2018 2018-09-01 PMC N PMC7088392 30173290.0 10.1007/s10916-018-1041-3 1v3wl6ky 0.345297 Guery_2014, Wiwanitkit_2014, Li_C_2018, Lee_C_2017, Stenseth_2008 AlMoammar_2018, John_2019, Distante_2020, Zhang_2015
475 Li_W_2016 Determination of total organic carbon and soluble solids contents in Tanreqing injection intermediates with NIR spectroscopy and chemometrics Li, Wenlong; Qu, Haibin 2016 2016-03-15 PMC N PMC7114577 10.1016/j.chemolab.2015.12.018 86srlles 0.344708 Saw_A_2019, Dai_Q_2012, Saw_A_2019, Hoang_2015, Feng_2010 Sun_Y_2017, Navarro_Escamilla_2013, Fang_2019, Wang_2013
476 Guo_Z_2020 Early warning of some notifiable infectious diseases in China by the artificial neural network Guo, Zuiyuan; He, Kevin; Xiao, Dan 2020 2020-02-19 COMM-USE N PMC7062078 10.1098/rsos.191420 a1rd7kas 0.344708 Polverino_2017, Mondor_2012, Kreiss_2007, Li_C_2018, Li_L_2014 Distante_2020, Wang_2019
477 Carreño-Durán_2013 Design of a set of probes with high potential for influenza virus epidemiological surveillance Carreño-Durán, Luis R; Larios-Serrato, V; Jaimes-Díaz, Hueman; Pérez-Cervantes, Hilda; Zepeda-López, Héctor; Sánchez-Vallejo, Carlos Javier; Olguín-Ruiz, Gabriela Edith; Maldonado-Rodríguez, Rogelio; Méndez-Tenorio, Alfonso 2013 2013-04-30 PMC N PMC3670124 23750091.0 10.6026/97320630009414 xr0uhccv 0.344708 Chang_2011, Zheng_2008, Gardner_2004, Wang_2013, Lee_C_2017 Ren_X_2008, Wang_1996
478 Shen_2006 Probabilistic analysis of the frequencies of amino acid pairs within characterized protein sequences Shen, Shiyi; Kai, Bo; Ruan, Jishou; Torin Huzil, J.; Carpenter, Eric; Tuszynski, Jack A. 2006 2006-10-15 PMC N PMC7127678 10.1016/j.physa.2006.03.004 hjo78o1q 0.344671 Chang_2011, Saw_A_2019, Lee_C_2017, Qi_Z_2018 Nandy_2009, Otsuka_1999
479 Zhou_2020 Improved deep learning model for differentiating novel coronavirus pneumonia and influenza pneumonia Min Zhou; Yong Chen; Dexiang Wang; Yanping Xu; Weiwu Yao; Jingwen Huang; Xiaoyan Jin; Zilai Pan; Jingwen Tan; Lan Wang; Yihan Xia; Longkuan Zou; Xin Xu; Jingqi Wei; Mingxin Guan; Jianxing Feng; Huan Zhang; Jieming Qu 2020 2020-03-30 BioRxiv Y 10.1101/2020.03.24.20043117 ilc2bzkx 0.344559 Polverino_2017, Lee_C_2017, Pearson_2020, Saw_A_2019, Liu_Z_2020 Song_2020, Fu_M_2020
480 Tcherepanov_2006 Genome Annotation Transfer Utility (GATU): rapid annotation of viral genomes using a closely related reference genome Tcherepanov, Vasily; Ehlers, Angelika; Upton, Chris 2006 2006-06-13 COMM-USE N PMC1534038 16772042.0 10.1186/1471-2164-7-150 1e2kkhht 0.344378 Cheng_2013, UNKNOWN_2018, Brister_2015, O'Leary_2016 Wang_2010, Godeny_1990
481 Jenkins_2020 In silico approach to accelerate the development of mass spectrometry-based proteomics methods for detection of viral proteins: Application to COVID-19 Conor Jenkins; Ben Orsburn 2020 2020-03-10 BioRxiv Y 10.1101/2020.03.08.980383 te049lxh 0.344316 Cheng_2013, Montgomery_2004, UNKNOWN_2018, O'Leary_2016 Jiang_2017, Wang_2009, Saraswat_2020, Yang_2017
482 Crossman_2020 Leverging Deep Learning to Simulate Coronavirus Spike proteins has the potential to predict future Zoonotic sequences Lisa Caroline Crossman 2020 2020-04-20 BioRxiv N 10.1101/2020.04.20.046920 x8jytnj6 0.344295 Rice_1992, Lee_C_2017, Denison_2008, Gardner_2004, Chang_2011
483 Janies_2011 The Supramap project: linking pathogen genomes with geography to fight emergent infectious diseases Janies, Daniel A.; Treseder, Travis; Alexandrov, Boyan; Habib, Farhat; Chen, Jennifer J.; Ferreira, Renato; Çatalyürek, Ümit; Varón, Andrés; Wheeler, Ward C. 2011 2011-01-04 PMC N PMC7162175 10.1111/j.1096-0031.2010.00314.x x0pke9am 0.343891 UNKNOWN_2010, Mack_2007, Brister_2015, Fauci_2006, Zhou_2020
484 Zhang_2019 Rapid identification of human‐infecting viruses Zhang, Zheng; Cai, Zena; Tan, Zhiying; Lu, Congyu; Jiang, Taijiao; Zhang, Gaihua; Peng, Yousong 2019 2019-08-12 PMC N PMC7168554 31373773.0 10.1111/tbed.13314 mpp3ctem 0.343670 Chang_2011, Lee_C_2017, Brister_2015, Deng_2015, Smits_2014
485 Morfopoulou_2014 Bayesian mixture analysis for metagenomic community profiling. Sofia Morfopoulou; Vincent Plagnol 2014 2014-07-25 BioRxiv N 10.1101/007476 058r9486 0.343462 Chang_2011, Liou_2013, Lee_C_2017, Saw_A_2019, Bocharov_2018 Morfopoulou_2015, Giles_2015, Miller_2013, Baldwin_2014
486 Zhang_2018 TBC2target: A Resource of Predicted Target Genes of Tea Bioactive Compounds Zhang, Shihua; Zhang, Liang; Wang, Yijun; Yang, Jian; Liao, Mingzhi; Bi, Shoudong; Xie, Zhongwen; Ho, Chi-Tang; Wan, Xiaochun 2018 2018-02-22 COMM-USE N PMC5827417 29520288.0 10.3389/fpls.2018.00211 6btnicgl 0.343037 Wang_2006, Qi_Z_2018, Chang_2011, Cheng_2013, Liu_Z_2008 Su_J_2014, Lee_C_2020, Chen_2013, Rahman_2017
487 Wagner_1984 A computer based system for collection, storage, retrieval and reporting accession information in a veterinary medical diagnostic laboratory Wagner, Joseph E.; Warriner, William J.; Bradfield, Sylvia A.; Farrar, Patricia L.; Morehouse, Lawrence G. 1984 1984-12-31 PMC N 6380915.0 10.1016/0010-4825(84)90033-7 83f0ruku 0.342786 Rodier_2007, Murray_2017, Howard_2016, UNKNOWN_2018 Stokes_1993, Chapman_2004, Mörk_2009
488 Kyagulanyi_2020 RISK ANALYSIS AND PREDICTION FOR COVID19 DEMOGRAPHICS IN LOW RESOURCE SETTINGS USING A PYTHON DESKTOP APP AND EXCEL MODELS. Ali Kyagulanyi; Joel Tibabwetiza Muhanguzi; Oscar Dembe; Sheba Kirabo 2020 2020-04-17 BioRxiv Y 10.1101/2020.04.13.20063453 7okyyb2m 0.342458 Coker_2007, Mack_2007, Mwabu_2008, Zhou_2020, Stenseth_2008
489 Broseus_2020 TALC: Transcription Aware Long Read Correction Lucile Broseus; Aubin Thomas; Andrew J. Oldfield; Dany Severac; Emeric Dubois; William Ritchie 2020 2020-01-11 BioRxiv N 10.1101/2020.01.10.901728 wtarrhf0 0.341814 Deng_2015, Cheng_2013, Montgomery_2004, Yu_H_2007, Whiteford_2005 Lee_V_2020, Trypsteen_2016, Donovan-Banfield_2020, Habjan_2013
490 Bartoszewicz_2020 Interpretable detection of novel human viruses from genome sequencing data Jakub M Bartoszewicz; Anja Seidel; Bernhard Y Renard 2020 2020-01-30 BioRxiv Y 10.1101/2020.01.29.925354 ac00tai9 0.341254 Chang_2011, Lee_C_2017, Denison_2008, Deng_2015, Gamermann_2014 Lopez-Rincon_2020, Lachheb_2019, Shi_W_2017
491 Pickett_2011 ViPR: an open bioinformatics database and analysis resource for virology research Pickett, Brett E.; Sadat, Eva L.; Zhang, Yun; Noronha, Jyothi M.; Squires, R. Burke; Hunt, Victoria; Liu, Mengya; Kumar, Sanjeev; Zaremba, Sam; Gu, Zhiping; Zhou, Liwei; Larson, Christopher N.; Dietrich, Jonathan; Klem, Edward B.; Scheuermann, Richard H. 2011 2011-10-17 NONCOMM N PMC3245011 22006842.0 10.1093/nar/gkr859 48ym7eti 0.341142 Garcia–Moliner_2013, Ryu_W_2017, Crowe_2014, Davaro_2013 McGuire_2012, Pickett_2012, Wang_2020
492 Al-Ssulami_2020 CodSeqGen: A tool for generating synonymous coding sequences with desired GC-contents Al-Ssulami, Abdulrakeeb M.; Azmi, Aqil M.; Hussain, Muhammad 2020 2020-01-31 PMC N PMC7127556 30738198.0 10.1016/j.ygeno.2019.02.002 64zqe4cz 0.340541 Wu_G_2005, Chang_2011, Morikawa_1992, Krause_1987 Samal_2013, Firth_2009
493 Weir_2017 Development of a microbial dose response visualization and modelling application for QMRA modelers and educators Weir, Mark H.; Mitchell, Jade; Flynn, William; Pope, Joanna M. 2017 2017-02-01 PMC N PMC5665384 29104445.0 10.1016/j.envsoft.2016.11.011 wslu5fof 0.340133 Bocharov_2018, Lu_Q_2006, Kurc_2006, Gamermann_2014 Grant_2016, Van_Leuken_2016, Alexander_2009
494 Cope_2019 Identification of the relative timing of infectiousness and symptom onset for outbreak control Robert C. Cope; Joshua V. Ross 2019 2019-03-08 BioRxiv N 10.1101/571547 8r0vfzeu 0.339899 Bocharov_2018, Cope_2020, Chang_2011, Liou_2013 Cope_2020, Nishiura_2007, Kucharski_2015, Glennon_2020
495 Smith_2012 ciliaFA: a research tool for automated, high-throughput measurement of ciliary beat frequency using freely available software Smith, Claire M; Djakow, Jana; Free, Robert C; Djakow, Petr; Lonnen, Rana; Williams, Gwyneth; Pohunek, Petr; Hirst, Robert A; Easton, Andrew J; Andrew, Peter W; O’Callaghan, Christopher 2012 2012-08-01 COMM-USE N PMC3607980 23351276.0 10.1186/2046-2530-1-14 pj330wn4 0.339786 Polverino_2017, Montgomery_2004, Hjortland_2016, Alqahtani_2016 Papon_2012, Chilvers_2003
496 VanderWaal_2017 Translating Big Data into Smart Data for Veterinary Epidemiology VanderWaal, Kimberly; Morrison, Robert B.; Neuhauser, Claudia; Vilalta, Carles; Perez, Andres M. 2017 2017-07-17 COMM-USE N PMC5511962 28770216.0 10.3389/fvets.2017.00110 03tx0rni 0.339441 Mwabu_2008, Wei_B_2011, Zhou_2020, Griffiths_2010, Mack_2007 Polonsky_2019, Rabaa_2015, Kelly_2020
497 Fonseca_2019 A computational method for the identification of Dengue, Zika and Chikungunya virus species and genotypes Fonseca, Vagner; Libin, Pieter J. K.; Theys, Kristof; Faria, Nuno R.; Nunes, Marcio R. T.; Restovic, Maria I.; Freire, Murilo; Giovanetti, Marta; Cuypers, Lize; Nowé, Ann; Abecasis, Ana; Deforche, Koen; Santiago, Gilberto A.; de Siqueira, Isadora C.; San, Emmanuel J.; Machado, Kaliane C. B.; Azevedo, Vasco; Filippis, Ana Maria Bispo-de; da Cunha, Rivaldo Venâncio; Pybus, Oliver G.; Vandamme, Anne-Mieke; Alcantara, Luiz C. J.; de Oliveira, Tulio 2019 2019-05-08 COMM-USE N PMC6527240 31067235.0 10.1371/journal.pntd.0007231 xn2wulnp 0.339292 Lu_P_2016, Wiwanitkit_2014, Walker_2010, Karlsson_2012, Yin_J_2013 Yu_J_2019, Sun_B_2018, Rabaa_2015
498 Stokes_1993 Computer network for a diagnostic virology laboratory Stokes, K.Jerry; Morris, David J.; Klapper, Paul E.; Semple, A.David; Crosdale, Elaine; Corbitt, Gerald 1993 1993-12-31 PMC N 8106601.0 10.1016/0166-0934(93)90113-6 eawmuuye 0.339145 Polverino_2017, Nelson_2012, Nelson_2012, Murray_2017 Huang_2007, Shean_2018, LaSala_2007
499 Ma_L_2018 Differential network as an indicator of osteoporosis with network entropy Ma, Lili; Du, Hongmei; Chen, Guangdong 2018 2018-05-16 NONCOMM N PMC5995033 29896257.0 10.3892/etm.2018.6169 61t686w7 0.339145 Qi_Z_2018, Chang_2011, Welch_2011, Saw_A_2019, Liu_Z_2008 CHEN_2014, Chen_2015, Li_P_2017, Wei_B_2015
500 Kirillova_2009 Protein Domain Boundary Predictions: A Structural Biology Perspective Kirillova, Svetlana; Kumar, Suresh; Carugo, Oliviero 2009 2009-01-21 NONCOMM N PMC2669640 19401756.0 10.2174/1874091x00903010001 qrnhp1ek 0.339029 Lee_C_2017, Chang_2011, Qi_Z_2018, Liu_Z_2008 van_Dijk_2008, Choo_2009, RAMAKRISHNA_2015
501 Akther_2020 CoV Genome Tracker: tracing genomic footprints of Covid-19 pandemic Saymon Akther; Edgaras Bezrucenkovas; Brian Sulkow; Christopher Panlasigui; Li Li; Weigang Qiu; Lia Di 2020 2020-04-14 BioRxiv Y 10.1101/2020.04.10.036343 abqrh2aw 0.339008 UNKNOWN_2016, UNKNOWN_2018, Murray_2017, MacIntyre_2020, Cheng_2013 Smits_2015, Deng_2020, Anderson_2020, Niemeyer_2018
502 Tian_2016 The similarity analysis of financial stocks based on information clustering Tian, Qiang; Shang, Pengjian; Feng, Guochen 2016 2016-05-26 PMC N PMC7088863 10.1007/s11071-016-2851-9 a2m46j0z 0.338877 Chang_2011, Qi_Z_2018, Polverino_2017, Dai_Q_2012 Tian_2014, Tung_2011, Argyroudis_2019, Hui_E_2016
503 Redelings_2007 Incorporating indel information into phylogeny estimation for rapidly emerging pathogens Redelings, Benjamin D; Suchard, Marc A 2007 2007-03-14 COMM-USE N PMC1853084 17359539.0 10.1186/1471-2148-7-40 bkfkmtld 0.338518 Chang_2011, Saw_A_2019, Qi_Z_2018, Zheng_2008 Lemey_2009, Hilton_2018
504 Hui_E_2016 Capture the abrupt changes in Asian residential property markets Hui, Eddie C.M.; Liang, Cong; Zhong, Jiawei; Ip, Wai-Cheung 2016 2016-08-31 PMC N PMC7115552 10.1016/j.habitatint.2016.06.005 4ezebg45 0.337542 Bocharov_2018, Zheng_2020, Liou_2013, Chang_2011 Hui_E_2013, Lee_C_2008, Lin_T_2011, Treadway_2012
505 Joshi_2020 deepMINE - Natural Language Processing based Automatic Literature Mining and Research Summarization for Early-Stage Comprehension in Pandemic Situations specifically for COVID-19 Bhrugesh Joshi; Vishvajit Bakarola; Parth Shah; Ramar Krishnamurthy 2020 2020-04-02 BioRxiv Y 10.1101/2020.03.30.014555 aeyf0yu1 0.336587 UNKNOWN_2010, Nelson_2012, Nelson_2012, Dentico_2005, Curcin_2005 Venkatakrishnan_2020, Choi_2017, Mahapatra_2020
506 UNKNOWN_2016 Database resources of the National Center for Biotechnology Information None 2016 2016-01-04 PMC N PMC4702911 26615191.0 10.1093/nar/gkv1290 a564l6vs 0.336288 Kradin_2013, UNKNOWN_2018, Garcia–Moliner_2013, UNKNOWN_2009 UNKNOWN_2018, Aurrecoechea_2017, O'Leary_2016
507 Shaban-Nejad_2012 HAIKU: A Semantic Framework for Surveillance of Healthcare-Associated Infections Shaban-Nejad, Arash; Riazanov, Alexandre; Charland, Katia M.; Rose, Gregory W.; Baker, Christopher J.O.; Tamblyn, Robyn; Forster, Alan J.; Buckeridge, David L. 2012 2012-12-31 PMC N 10.1016/j.procs.2012.06.151 abvpy8dg 0.336288 Mwabu_2008, Coker_2007, Wei_B_2011, Knapp_2008, Zhou_2020 Collier_2007, May_L_2009, Paterson_2013, Glennon_2020
508 Lee_I_2011 Prioritizing candidate disease genes by network-based boosting of genome-wide association data Lee, Insuk; Blom, U. Martin; Wang, Peggy I.; Shim, Jung Eun; Marcotte, Edward M. 2011 2011-05-02 None N PMC3129253 21536720.0 10.1101/gr.118992.110 m0yaekdv 0.335880 Chang_2011, Castrignano_2015, Cheng_2012, Sen_D_2018, Liu_Z_2008 Gralinski_2015, Zhang_2010, Mozzi_2018, Evans_2020
509 Chen_2020 Early prediction of mortality risk among severe COVID-19 patients using machine learning Xingdong Chen; Zhenqiu Liu 2020 2020-04-19 BioRxiv Y 10.1101/2020.04.13.20064329 z0vup2lr 0.335185 Saw_A_2019, Polverino_2017, batista_2020, batista_2020, Zhao_2013
510 Feng_2017 Warehouse capacity sharing via transshipment for an integrated two-echelon supply chain Feng, Xuehao; Moon, Ilkyeong; Ryu, Kwangyeol 2017 2017-08-31 PMC N 10.1016/j.tre.2017.04.014 it5pj8ub 0.334227 Coker_2007, Mwabu_2008, Zhou_2020, Alves_2007, Martin_2008 Xiao_2006, Amiri_2018, Yoon_2015, Chen_2017
511 Milanetti_2020 In-Silico evidence for two receptors based strategy of SARS-CoV-2 Edoardo Milanetti; Mattia Miotto; Lorenzo Di Rienzo; Michele Monti; Giorgio Gosti; Giancarlo Ruocco 2020 2020-03-27 BioRxiv Y 10.1101/2020.03.24.006197 ob37jivi 0.333929 Qi_Z_2018, Chang_2011, Dai_Q_2012, Polverino_2017, Saw_A_2019 Zhang_2009, Yap_Y_2005, Niu_C_2008, Lee_H_2013
512 Xu_Y_2015 Identification of Peptide Inhibitors of Enveloped Viruses Using Support Vector Machine Xu, Yongtao; Yu, Shui; Zou, Jian-Wei; Hu, Guixiang; Rahman, Noorsaadah A. B. D.; Othman, Rozana Binti; Tao, Xia; Huang, Meilan 2015 2015-12-04 COMM-USE N PMC4670226 26636321.0 10.1371/journal.pone.0144171 v4xue7ha 0.333804 Rice_1992, Berkhout_2006, Naito_2007, Ivarsson_2012, Trobaugh_2017 van_der_Linden_2014, Lee_C_2019, Robinson_2013, Veiga_2006
513 Swennen_2020 Custom-made 3D-printed face masks in case of pandemic crisis situations with a lack of commercially available FFP2/3 masks Swennen, Gwen R.J.; Pottel, Lies; Haers, Piet E. 2020 2020-04-02 PMC N 10.1016/j.ijom.2020.03.015 lyob5wfv 0.329661 Polverino_2017, Lu_Q_2006, Yeh_J_2008, Montgomery_2004 Mostaghimi_2020, CHECCHI_2005, Traverso_2020, Cramer_2020
514 Javadi_2006 Diagnosing pneumonia in rural Thailand: Digital cameras versus film digitizers for chest radiograph teleradiology Javadi, Massoud; Subhannachart, Ponglada; Levine, Sunisa; Vijitsanguan, Chomphunut; Tungsagunwattana, Sutarat; Dowell, Scott F.; Olsen, Sonja J. 2006 2006-03-31 PMC N PMC7110458 16243559.0 10.1016/j.ijid.2005.01.007 yzqcet2l 0.329298 Kylberg_2009, Polverino_2017, Yeh_J_2008, Montgomery_2004 Upchurch_2018, Chan_2005, Schuh_2007, Alzahrani_2017
515 Adoteye_2015 Optimal design of non-equilibrium experiments for genetic network interrogation Adoteye, Kaska; Banks, H.T.; Flores, Kevin B. 2015 2015-02-28 PMC N PMC4281269 25558126.0 10.1016/j.aml.2014.09.013 wfn50oqq 0.328504 Bocharov_2018, Gamermann_2014, Chang_2011, Qi_Z_2018 Domingo_2020, Domingo_2016, Ferris_2014
516 Chou_2011 Some remarks on protein attribute prediction and pseudo amino acid composition Chou, Kuo-Chen 2011 2011-03-21 PMC N PMC7125570 21168420.0 10.1016/j.jtbi.2010.12.024 2scgsmsc 0.328045 Lee_C_2017, Liu_Z_2008, Qi_Z_2018, Chang_2011, Sen_D_2018 Choo_2009, Jia_J_2016, Xiao_2005, De_Ferrari_2014
517 Klein_2020 A Chronological and Geographical Analysis of Personal Reports of COVID-19 on Twitter Ari Klein; Arjun Magge; Karen O'Connor; Haitao Cai; Davy Weissenbacher; Graciela Gonzalez-Hernandez 2020 2020-04-22 BioRxiv Y 10.1101/2020.04.19.20069948 8f1arjw1 0.327616 Wei_B_2011, Griffiths_2010, Zhou_2020, Coker_2007, Alves_2007
518 Chou_2011 Applications of analytical ultracentrifugation to protein size-and-shape distribution and structure-and-function analyses Chou, Chi-Yuan; Hsieh, Yi-Hui; Chang, Gu-Gang 2011 2011-05-31 PMC N PMC7128498 21087667.0 10.1016/j.ymeth.2010.11.002 cw2opick 0.327259 Qi_Z_2018, Dai_Q_2012, Chang_2011, Liu_Z_2008, Webb_2014 Buller_2012, Ramírez-Sarmiento_2015
519 Fontanini_2016 A methodology for optimal placement of sensors in enclosed environments: A dynamical systems approach Fontanini, Anthony D.; Vaidya, Umesh; Ganapathysubramanian, Baskar 2016 2016-05-01 PMC N PMC7126557 10.1016/j.buildenv.2016.02.003 vgq2nt3q 0.326700 Bocharov_2018, Mwabu_2008, Coker_2007, Polverino_2017, Alves_2007 Martin_2018, Cheng_2020, Mikler_2007, Bastani_2012
520 Andre_2020 COVID-19 diagnosis prediction in emergency care patients: a machine learning approach Andre Filipe de Moraes Batista; Joao Luiz Miraglia; Thiago Henrique Rizzi Donato; Alexandre Dias Porto Chiavegatto Filho 2020 2020-04-07 BioRxiv Y 10.1101/2020.04.04.20052092 nvavj9gk 0.326618 Saw_A_2019, Lee_C_2017, Griffiths_2010, Knapp_2008, Chen_2010 Guo_L_2019, AlMoammar_2018, wang_2020, Yan_L_2020
521 Lai_P_2004 Understanding the Spatial Clustering of Severe Acute Respiratory Syndrome (SARS) in Hong Kong Lai, P.C.; Wong, C.M.; Hedley, A.J.; Lo, S.V.; Leung, P.Y.; Kong, J.; Leung, G.M. 2004 2004-07-27 COMM-USE N PMC1247620 15531441.0 10.1289/ehp.7117 ej795nks 0.326160 Walker_2010, Mondor_2012, Marchand-Austin_2009, Puranaveja_2009, Vui_D_2014 Meng_2005, Mao_Y_2019, Cao_C_2016, Al-Ahmadi_2019
522 Durrant_2013 Comparing Neural-Network Scoring Functions and the State of the Art: Applications to Common Library Screening Durrant, Jacob D.; Friedman, Aaron\nJ.; Rogers, Kathleen\nE.; McCammon, J. Andrew 2013 2013-06-04 PMC N PMC3735370 23734946.0 10.1021/ci400042y kauk7ze0 0.325663 Polverino_2017, Dai_Q_2012, Saw_A_2019, Qi_Z_2018 Li_H_2009, Mukherjee_2011, Lee_H_2014, Wang_2006
523 Le_Mercier_2019 A Bioinformatics View of Glycan–Virus Interactions Le Mercier, Philippe; Mariethoz, Julien; Lascano-Maillard, Josefina; Bonnardel, François; Imberty, Anne; Ricard-Blum, Sylvie; Lisacek, Frédérique 2019 2019-04-23 COMM-USE N PMC6521074 31018588.0 10.3390/v11040374 o13ti3xx 0.325663 UNKNOWN_2004, Johnson_2018, Liu_Z_2008, van_Kampen_2015 Watanabe_2019, Vigerust_2007, Vigerust_2011, Zhang_2015
524 Zhang_2013 A combination of epitope prediction and molecular docking allows for good identification of MHC class I restricted T-cell epitopes Zhang, Xue Wu 2013 2013-08-31 PMC N PMC7106517 23666426.0 10.1016/j.compbiolchem.2013.03.003 9lqh0evn 0.325635 Naito_2007, Rice_1992, Khan_2006, Montefiori_2007 Kumar_2019, Hou_Y_2012, Wang_2012, Poran_2020
525 Sachdeva_2005 SPAAN: a software program for prediction of adhesins and adhesin-like proteins using neural networks Sachdeva, Gaurav; Kumar, Kaushal; Jain, Preti; Ramachandran, Srinivasan 2005 2005-02-15 PMC N PMC7109999 15374866.0 10.1093/bioinformatics/bti028 k5u6tdkg 0.325026 Rice_1992, Gardner_2004, Lee_C_2017, Berkhout_2006, Haasnoot_2010 Ielasi_2016, Xue_G_2013, Zhang_2011
526 Thi_T_2014 Recognizing flu-like symptoms from videos Thi, Tuan Hue; Wang, Li; Ye, Ning; Zhang, Jian; Maurer-Stroh, Sebastian; Cheng, Li 2014 2014-09-12 COMM-USE N PMC4180141 25217118.0 10.1186/1471-2105-15-300 gm1e9j80 0.324467 Mack_2007, Mooney_2013, Looker_2006, Ropeik_2004, Polverino_2017 Fu_M_2020, Guo_S_2020, Zhou_2020, Alfaraj_2018
527 UNKNOWN_2018 Database resources of the National Center for Biotechnology Information None 2018 2018-01-04 PMC N PMC5753372 29140470.0 10.1093/nar/gkx1095 ca6pff0p 0.324314 UNKNOWN_2016, MacIntyre_2020, O'Leary_2016, Murray_2017 UNKNOWN_2016, O'Leary_2016
528 Haibin_2004 Prokaryote phylogeny based on ribosomal proteins and aminoacyl tRNA synthetases by using the compositional distance approach Haibin, Wei; Ji, Qi; Bailin, Hao 2004 2004-01-01 PMC N PMC7088628 15493472.0 10.1360/03yc0137 uukrqp7j 0.324308 Zheng_2008, Chang_2011, Lee_C_2017, Saw_A_2019, Kinene_2016 Sun_J_2010
529 Boulos_2004 Descriptive review of geographic mapping of severe acute respiratory syndrome (SARS) on the Internet Boulos, Maged N Kamel 2004 2004-01-28 PMC N PMC343293 14748926.0 10.1186/1476-072x-3-2 kuybfc1y 0.324308 Fielding_2014, Griffiths_2010, Wei_B_2011, Amirov_2007, Zhou_2020 Ramshaw_2019, Fusco_2018, Lai_P_2004, Mao_Y_2019
530 Morfopoulou_2015 Bayesian mixture analysis for metagenomic community profiling Morfopoulou, Sofia; Plagnol, Vincent 2015 2015-09-15 COMM-USE N PMC4565032 26002885.0 10.1093/bioinformatics/btv317 z29xsj1o 0.323706 Chang_2011, Montgomery_2004, Cheng_2013, Deng_2015, Lee_C_2017 Morfopoulou_2014, Baldwin_2014, Selvin_2019, Giles_2015
531 Nandy_2015 Chapter 5 The GRANCH Techniques for Analysis of DNA, RNA and Protein Sequences Nandy, Ashesh 2015 2015-12-31 PMC N PMC7151884 10.1016/b978-1-68108-053-6.50005-3 7kiahjyy 0.322930 Sen_D_2018, UNKNOWN_2004, Johnson_2018, Liu_Z_2008, Zheng_2020 Nowak_1984, Ghosh_2011, Otsuka_1999
532 Kumar_2017 Prediction of endoplasmic reticulum resident proteins using fragmented amino acid composition and support vector machine Kumar, Ravindra; Kumari, Bandana; Kumar, Manish 2017 2017-09-04 COMM-USE N PMC5588793 28890846.0 10.7717/peerj.3561 t54zftal 0.321910 UNKNOWN_1995, Wang_2013, Saraste_1992, Hobman_1993 Fu_J_2000, Fox_R_2014, UNKNOWN_1984
533 Gao_J_2010 Inverse folding of RNA pseudoknot structures Gao, James ZM; Li, Linda YM; Reidys, Christian M 2010 2010-06-23 COMM-USE N PMC2909241 20573197.0 10.1186/1748-7188-5-27 1lojd0xa 0.321806 Dawson_2007, Staple_2005, Chang_2011, Dost_2006, Qi_Z_2018 Guo_Y_2013
534 Song_2020 Deep learning Enables Accurate Diagnosis of Novel Coronavirus (COVID-19) with CT images Ying Song; Shuangjia Zheng; Liang Li; Xiang Zhang; Xiaodong Zhang; Ziwang Huang; Jianwen Chen; Huiying Zhao; Yusheng Jie; Ruixuan Wang; Yutian Chong; Jun Shen; Yunfei Zha; Yuedong Yang 2020 2020-02-25 BioRxiv Y 10.1101/2020.02.23.20026930 zqsy6r4i 0.321086 Polverino_2017, Lee_C_2017, Zheng_2020, Chang_2011, Nelson_2012 Ai_J_2020, Wang_2020
535 Cacciabue_2019 A beginner’s guide for FMDV quasispecies analysis: sub-consensus variant detection and haplotype reconstruction using next-generation sequencing Cacciabue, Marco; Currá, Anabella; Carrillo, Elisa; König, Guido; Gismondi, María Inés 2019 2019-11-04 PMC N PMC7110011 31697321.0 10.1093/bib/bbz086 hphn7cs6 0.320703 Siridechadilok_2013, Djikeng_2009, Smith_2013, Brister_2015 Lachheb_2019, Shabman_2016, Dacheux_2014, Alquezar-Planas_2013
536 Shulman-Peleg_2004 Recognition of Functional Sites in Protein Structures Shulman-Peleg, Alexandra; Nussinov, Ruth; Wolfson, Haim J. 2004 2004-06-04 PMC N PMC7126412 15147845.0 10.1016/j.jmb.2004.04.012 66qoykl1 0.320351 Chang_2011, Qi_Z_2018, Polverino_2017, Liu_Z_2008 Kuhn_2006, Myllykoski_2017, Ziółkowska_2006
537 Kolozsvari_2020 Predicting the epidemic curve of the coronavirus (SARS-CoV-2) disease (COVID-19) using artificial intelligence Laszlo Robert Kolozsvari; Tamas Berczes; Andras Hajdu; Rudolf Gesztelyi; Attila TIba; Imre Varga; Gergo Jozsef Szollosi; Szilvia Harsanyi; Szabolcs Garboczy; Judit Zsuga 2020 2020-04-22 BioRxiv Y 10.1101/2020.04.17.20069666 35xpmdbj 0.319838 Polverino_2017, Lipsitch_2014, Zheng_2020, Chang_2011, UNKNOWN_2010
538 Kizza_2014 Introduction to Computer Network Vulnerabilities Kizza, Joseph Migga 2014 2014-12-17 PMC N PMC7123193 10.1007/978-1-4471-6654-2_4 mp9dlbgf 0.319378 Mack_2007, Coker_2007, Murray_2017, Rodier_2007, Looker_2006 Kizza_2017, Kizza_2012, Smith_2016
539 Lin_X_2020 A Review on Applications of Computational Methods in Drug Screening and Design Lin, Xiaoqian; Li, Xiu; Lin, Xubo 2020 2020-03-18 COMM-USE N PMC7144386 32197324.0 10.3390/molecules25061375 xurmzmwj 0.319259 Johnson_2018, Duan_2015, May_E_2016, Park_2012 Kumar_2015, Chiba_2012, Ekins_2007, Grey_2010
540 Sollner_2008 Analysis and prediction of protective continuous B-cell epitopes on pathogen proteins Sollner, Johannes; Grohmann, Rainer; Rapberger, Ronald; Perco, Paul; Lukas, Arno; Mayer, Bernd 2008 2008-01-07 COMM-USE N PMC2244602 18179690.0 10.1186/1745-7580-4-1 ml2luc1t 0.319105 Chang_2011, Qi_Z_2018, Lee_C_2017, Polverino_2017, Kirillova_2009 Lollier_2011, Robinson_2013, Kumar_2019, Lon_J_2020
541 Jacques_2010 Small-angle scattering for structural biology—Expanding the frontier while avoiding the pitfalls Jacques, David A; Trewhella, Jill 2010 2010-01-29 PMC N PMC2867006 20120026.0 10.1002/pro.351 eg63bjl5 0.318779 Bocharov_2018, Polverino_2017, Qi_Z_2018, Liou_2013, Chang_2011 Chou_2011, Jonić_2016, Giegé_2010, Buller_2012
542 Wei_C_2011 Identification and Typing of Human Enterovirus: A Genomic Barcode Approach Wei, Chengguo; Wang, Guoqing; Chen, Xin; Huang, Honglan; Liu, Bin; Xu, Ying; Li, Fan 2011 2011-10-14 COMM-USE N PMC3194813 22022592.0 10.1371/journal.pone.0026296 qkymwvwb 0.318660 Chang_2011, Zheng_2008, Lee_C_2017, Saw_A_2019 Ren_X_2008, de_Souza_Luna_2008
543 Yu_C_2010 A Novel Construction of Genome Space with Biological Geometry Yu, Chenglong; Liang, Qian; Yin, Changchuan; He, Rong L.; Yau, Stephen S.-T. 2010 2010-04-01 NONCOMM N PMC2885272 20360268.0 10.1093/dnares/dsq008 3c4dttrt 0.318660 Chang_2011, Zheng_2008, Lee_C_2017, Qi_Z_2018 Lauber_2013
544 Brahmbhatt_2016 Epidemiology-based Task Assignment Algorithm for Distributed Systems Brahmbhatt, Parth; Camorlinga, Sergio G. 2016 2016-12-31 PMC N 10.1016/j.procs.2016.09.356 qzrhihoz 0.317813 Bocharov_2018, Krause_2007, Zhou_2020, UNKNOWN_2004, Gupta_2009 Denphedtnong_2013, Zhong_2009, Coelho_2008
545 Huang_2016 Artificial infectious disease optimization: A SEIQR epidemic dynamic model-based function optimization algorithm Huang, Guangqiu 2016 2016-04-30 PMC N PMC7104270 10.1016/j.swevo.2015.09.007 9wrw6dv1 0.317738 Polverino_2017, Bifolchi_2013, Mack_2007, Welch_2011, Li_C_2018 Denphedtnong_2013, Gao_D_2018, Sahu_2015, Chen_2019
546 Alejandro_2018 Ensemble Feature Selection and Meta-Analysis of Cancer miRNA Biomarkers Lopez-Rincon Alejandro; Martinez-Archundia Marlet; Martinez-Ruiz Gustavo Ulises; Tonda Alberto 2018 2018-06-21 BioRxiv N 10.1101/353201 8dnyjuig 0.317393 Sen_D_2018, Haasnoot_2010, Liu_Z_2008, Chang_2011, Castrignano_2015 Faraldi_2018, Matin_2018, Alipoor_2016
547 Kliger_2008 Predicting proteolytic sites in extracellular proteins: only halfway there Kliger, Yossef; Gofer, Eyal; Wool, Assaf; Toporik, Amir; Apatoff, Avihay; Olshansky, Moshe 2008 2008-04-15 NONCOMM N PMC7109841 18321887.0 10.1093/bioinformatics/btn084 ol2du7ph 0.317351 Callison_1999, Francis_2016, Lee_C_2017, Wang_2007, Baranov_2009 Böttcher-Friebertshäuser_2018, Choo_2009, Tien_2017
548 Lin_C_2009 Developing a hierarchy relation with an expert decision analysis process for selecting the optimal resort type for a Taiwanese international resort park Lin, Chin-Tsai; Juan, Pin-Ju 2009 2009-03-31 PMC N PMC7125690 10.1016/j.eswa.2007.11.044 7ch054mt 0.317170 Coker_2007, Griffiths_2010, Stenseth_2008, Bocharov_2018 Guirao_2016, Huang_2012, Ugwu_2006, Paraskevas_2013
549 Kenah_2015 Semiparametric Relative-risk Regression for Infectious Disease Transmission Data Kenah, Eben 2015 2015-01-02 PMC N PMC4489164 26146425.0 10.1080/01621459.2014.896807 auasueaw 0.316341 Bocharov_2018, Bifolchi_2013, Chowell_2017, Lloyd_2009 Kenah_2012, Safi_2011, Leavitt_2019
550 Kamvar_2019 Epidemic curves made easy using the R package incidence Kamvar, Zhian N.; Cai, Jun; Pulliam, Juliet R.C.; Schumacher, Jakob; Jombart, Thibaut 2019 2019-01-31 COMM-USE N PMC6509961 31119031.0 10.12688/f1000research.18002.1 uiqk356j 0.315786 Murray_2017, Lu_Q_2006, Collier_2007, Bocharov_2018, Curcin_2005 Song_2020, Jombart_2014, Loberg_2020, Daughton_2017
551 Shaman_2018 Pandemic preparedness and forecast Shaman, Jeffrey 2018 2018-02-20 PMC N PMC7097585 29463927.0 10.1038/s41564-018-0117-7 l1nt46zx 0.315782 Brucker_2020, Lu_P_2016, McComas_2004, Buseh_2015 Hayman_2016, Rojek_2020, Bourgarel_2010
552 Bauch_2020 Informing epidemic (research) responses in a timely fashion by knowledge management - a Zika virus use case Angela Bauch; Johann Pellet; Tina Schleicher; Xiao Yu; Andrea Gelemanović; Cosimo Cristella; Pieter L. Fraaij; Ozren Polasek; Charles Auffray; Dieter Maier; Marion Koopmans; Menno D. de Jong 2020 2020-04-18 BioRxiv N 10.1101/2020.04.17.044743 tbx0ppu8 0.314505 Nelson_2012, Nelson_2012, UNKNOWN_2010, Curcin_2005, Coker_2007
553 Carrico_2005 Syndromic Surveillance: Hospital Emergency Department Participation During the Kentucky Derby Festival Carrico, Ruth; Goss, Linda 2005 2005-09-30 PMC N PMC7110958 15986027.0 10.1016/j.dmr.2005.04.003 n7p9jj0c 0.313693 Laurens_2019, Amirov_2007, Rodier_2007, Griffiths_2010, Knapp_2008 Wu_T_2008, Tham_2004, Worwor_2011, Wallace_2009
554 Cheng_2019 New approach to identifying proper thresholds for a heat warning system using health risk increments Cheng, Yu-Ting; Lung, Shih-Chun Candice; Hwang, Jing-Shiang 2019 2019-03-31 PMC N PMC7126132 30599292.0 10.1016/j.envres.2018.12.059 gwr4pkqk 0.313693 Wei_B_2011, Atkinson_2020, Mwabu_2008, Griffiths_2010, Knapp_2008 Ruscio_2015, Machalaba_2015, Lin_Y_2013
555 Han_L_2005 Prediction of functional class of novel viral proteins by a statistical learning method irrespective of sequence similarity Han, L.Y.; Cai, C.Z.; Ji, Z.L.; Chen, Y.Z. 2005 2005-01-05 PMC N PMC7111859 15582660.0 10.1016/j.virol.2004.10.020 88l9bq4i 0.313682 Lee_C_2017, Chang_2011, Qi_Z_2018, Saw_A_2019, Cheng_2013 Lee_B_2009, Rozanov_1995
556 Roy_K_2015 Chapter 10 Other Related Techniques Roy, Kunal; Kar, Supratik; Das, Rudra Narayan 2015 2015-12-31 PMC N PMC7149793 10.1016/b978-0-12-801505-6.00010-7 a9q0tcgz 0.313568 Park_2012, Webb_2014, Liu_Z_2008, Sen_D_2018, Liou_2013 Ekins_2007, Plewczynski_2007, Mukherjee_2011, Zhang_2018
557 Spencer_2004 Do Newton’s rules of reasoning guarantee truth … must they? Spencer, Quayshawn 2004 2004-12-31 PMC N PMC7134605 10.1016/j.shpsa.2004.02.001 hef1tfjx 0.313316 Mooney_2013, Zheng_2020, Coker_2007, Looker_2006, Dentico_2005 Roush_2015, Fox_J_2003, Niaz_2017, Siekmann_2018
558 Tobias_2020 COVID19-Tracker: A shiny app to produce comprehensive data visualization for SARS-CoV-2 epidemic in Spain Aurelio Tobias; Joan Valls; Pau Satorra; Cristian Tebe 2020 2020-04-06 BioRxiv Y 10.1101/2020.04.01.20049684 i1g9ikdb 0.313152 Zhou_2020, Mwabu_2008, Griffiths_2010, Amirov_2007, Wei_B_2011 John_2019, Chamberlain_2020, Silverman_2020
559 Li_W_2011 Cross-Crystal Averaging with Search Models to Improve Molecular Replacement Phases Li, Weikai; Li, Fang 2011 2011-02-09 None N PMC3037595 21300285.0 10.1016/j.str.2010.12.007 in8mbp7c 0.313152 Qi_Z_2018, Chang_2011, Polverino_2017, Bocharov_2018, Dai_Q_2012 RAMAKRISHNA_2015, Jonić_2016, Frenz_2019
560 Negi_2009 Automated Detection of Conformational Epitopes Using Phage Display Peptide Sequences Negi, Surendra S; Braun, Werner 2009 2009-07-01 COMM-USE N PMC2808184 20140073.0 lal14r4s 0.313088 Naito_2007, Volmer_2010, Chang_2011, Qi_Z_2018, Ivarsson_2012 Yu_M_2000, Ádám_1987, He_Y_2012, Han_T_2011
561 Asteris_2020 A Novel Heuristic Global Algorithm to Predict the COVID-19 Pandemic Trend Panagiotis G. Asteris; Maria Douvika; Christina Karamani; Athanasia Skentou; Tryfon Daras; Liborio Cavaleri; Danial Jahed Armaghani; Katerina Chlichlia; Theoklis E. Zaoutis 2020 2020-04-22 BioRxiv Y 10.1101/2020.04.16.20068445 v6on5gv9 0.312908 Griffiths_2010, Li_C_2018, UNKNOWN_2010, Liu_Z_2020, Polverino_2017
562 Pfannschmidt_2016 Evaluating Tests in Medical Diagnosis: Combining Machine Learning with Game-Theoretical Concepts Pfannschmidt, Karlson; Hüllermeier, Eyke; Held, Susanne; Neiger, Reto 2016 2016-05-10 PMC N PMC7121901 10.1007/978-3-319-40596-4_38 zr0bo9el 0.312389 Mooney_2013, Polverino_2017, Looker_2006, Bocharov_2018, Zheng_2020 Parvin_2012, Liu_Y_2020, Fusani_2018, Mohammad_2014
563 Robinson_2006 Validation of the Provincial Transfer Authorization Centre database: a comprehensive database containing records of all inter-facility patient transfers in the province of Ontario Robinson, Victoria A; MacDonald, Russell D; Manuel, Doug; Goel, Vivek 2006 2006-10-06 COMM-USE N PMC1609112 17026763.0 10.1186/1472-6963-6-129 24qizp9k 0.311566 Nelson_2012, Nelson_2012, Griffiths_2010, Murray_2017, Rodier_2007 Damji_2005, MacDonald_2004, AlRuthia_2019
564 Fu_M_2020 Deep Learning-Based Recognizing COVID-19 and other Common Infectious Diseases of the Lung by Chest CT Scan Images Min Fu; Shuang-Lian Yi; Yuanfeng Zeng; Feng Ye; Yuxuan Li; Xuan Dong; Yan-Dan Ren; Linkai Luo; Jin-Shui Pan; Qi Zhang 2020 2020-03-30 BioRxiv Y 10.1101/2020.03.28.20046045 96r8l6vq 0.311029 Polverino_2017, Lee_C_2017, Saw_A_2019, Chan_2005, Bédubourg_2017 Wang_2020, Jin_C_2020, Zheng_2020
565 Hassanien_2020 Automatic X-ray COVID-19 Lung Image Classification System based on Multi-Level Thresholding and Support Vector Machine Aboul Ella Hassanien; Lamia Nabil Mahdy; Kadry Ali Ezzat; Haytham H. Elmousalami; Hassan Aboul Ella 2020 2020-04-06 BioRxiv Y 10.1101/2020.03.30.20047787 45dpoepu 0.310793 Polverino_2017, Stenseth_2008, Zheng_2020, Lee_C_2017, Coker_2007 Fu_M_2020, Wang_2020, Ozturk_2020, Zheng_2020
566 Shcherbina_2016 Evaluating performance of metagenomic characterization algorithms using in silico datasets generated with FASTQSim Anna Shcherbina; Darrell O. Ricke; Nelson Chiu 2016 2016-03-31 BioRxiv N 10.1101/046532 csokkcqq 0.310644 Cheng_2013, Montgomery_2004, Lee_C_2017, Yu_H_2007, O'Leary_2016 Baldwin_2014, Twin_2013, Takhampunya_2019, Zinter_2018
567 Chen_2010 Forecasting tourist arrivals by using the adaptive network-based fuzzy inference system Chen, Miao-Sheng; Ying, Li-Chih; Pan, Mei-Chiu 2010 2010-03-31 PMC N PMC7126321 10.1016/j.eswa.2009.06.032 b2m3p3uh 0.310143 Griffiths_2010, Fielding_2014, Wei_B_2011, Chowell_2017 Xie_G_2020, Balli_2019, Jang_2008, Guirao_2016
568 Tikhomirov_2018 News Timeline Generation: Accounting for Structural Aspects and Temporal Nature of News Stream Tikhomirov, Mikhail; Dobrov, Boris 2018 2018-06-22 PMC N PMC7120637 10.1007/978-3-319-96553-6_19 w45h121w 0.310143 Lipsitch_2014, Polverino_2017, Mooney_2013, Zheng_2020, Nelson_2012 Vanderwende_2007, Keller_2009, Cai_Y_2019, Bertin_2017
569 Yan_S_2009 Mutation patterns in human α-galactosidase A Yan, Shaomin; Wu, Guang 2009 2009-05-26 PMC N PMC7088632 19468850.0 10.1007/s11030-009-9158-4 7floluv1 0.310036 Wu_G_2005, Chang_2011, Qi_Z_2018, Morikawa_1992 Levy_2000, Levy_2000, Ling_1995, Leu_S_2010
570 Obadia_2012 The R0 package: a toolbox to estimate reproduction numbers for epidemic outbreaks Obadia, Thomas; Haneef, Romana; Boëlle, Pierre-Yves 2012 2012-12-18 COMM-USE N PMC3582628 23249562.0 10.1186/1472-6947-12-147 vxg6b6d0 0.309283 Saw_A_2019, Chowell_2017, Chang_2011, Bocharov_2018, Dai_Q_2012 Thompson_2019, Safi_2011, Fraser_2007, Chong_2020
571 Laurie_Lau_2015 Chapter 2 Cybercrime in cloud Risks and responses in Hong Kong, Singapore Laurie Lau, Yiu Chung 2015 2015-12-31 PMC N PMC7161379 10.1016/b978-0-12-801595-7.00002-1 62cc135r 0.308388 Fielding_2014, Griffiths_2010, Wei_B_2011, Coker_2007, Mack_2007 Sareen_2016, Yen_M_2009, Quwaider_2016
572 Park_2018 Technological opportunity discovery for technological convergence based on the prediction of technology knowledge flow in a citation network Park, Inchae; Yoon, Byungun 2018 2018-11-30 PMC N 10.1016/j.joi.2018.09.007 skmxrkhf 0.308091 Coker_2007, Dentico_2005, Alves_2007, Kelley_2011, UNKNOWN_2004
573 Zeng_2007 Mass spectral profiling: An effective tool for quality control of herbal medicines Zeng, Zhong-Da; Liang, Yi-Zeng; Chau, Foo-Tim; Chen, Shuo; Daniel, Mok Kam-Wah; Chan, Chi-On 2007 2007-12-05 PMC N PMC7119444 17996528.0 10.1016/j.aca.2007.09.057 fk8vz0g0 0.307112 Bocharov_2018, Qi_Z_2018, Dai_Q_2012, Mendizabal-Ruiz_2018, Chang_2011 Lee_C_2020, Fang_2019, Nie_L_2016, YAO_R_2013
574 Yang_2011 A nationwide web-based automated system for outbreak early detection and rapid response in China Yang, Weizhong; Li, Zhongjie; Lan, Yajia; Wang, Jinfeng; Ma, Jiaqi; Jin, Lianmei; Sun, Qiao; Lv, Wei; Lai, Shengjie; Liao, Yilan; Hu, Wenbiao 2011 2011-03-08 PMC N PMC3729055 23908878.0 10.5365/wpsar.2010.1.1.009 zoai4kvn 0.307066 Rodier_2007, Norrby_2004, Murray_2017, Howard_2016, Griffiths_2010 Wu_T_2008, Swaan_2019, Rajatonirina_2014, Santa-Olalla_2013
575 Lapinsky_2004 Prospective evaluation of an internet-linked handheld computer critical care knowledge access system Lapinsky, Stephen E; Wax, Randy; Showalter, Randy; Martinez-Motta, J Carlos; Hallett, David; Mehta, Sangeeta; Burry, Lisa; Stewart, Thomas E 2004 2004-10-14 COMM-USE N PMC1065064 15566586.0 10.1186/cc2967 jw1lxwyd 0.306730 Knapp_2008, Amirov_2007, Griffiths_2010, DeWitt_2020, Kost_2019 Dudgeon_2008, Scott_2009
576 paul_2020 A multivariate spatiotemporal spread model of COVID-19 using ensemble of ConvLSTM networks swarna kamal paul; Saikat Jana; Parama Bhaumik 2020 2020-04-22 BioRxiv Y 10.1101/2020.04.17.20069898 nng76upj 0.306491 Bifolchi_2013, Chang_2011, Qi_Z_2018, Li_C_2018, Dai_Q_2012
577 Bos_L_2014 How integration of global omics-data could help preparing for pandemics – a scent of influenza Bos, Lieuwe D. J.; de Jong, Menno D.; Sterk, Peter J.; Schultz, Marcus J. 2014 2014-04-22 COMM-USE N PMC4000993 24795745.0 10.3389/fgene.2014.00080 kusjwue0 0.306034 Bocharov_2018, Gupta_2009, Stenseth_2008, Collier_2007, Vazquez_2020 Rabaa_2015, Hörster_2019, Kelly_2020, Shi_W_2017
578 Yu_Z_2010 Whole-proteome phylogeny of large dsDNA viruses and parvoviruses through a composition vector method related to dynamical language model Yu, Zu-Guo; Chu, Ka Hou; Li, Chi Pang; Anh, Vo; Zhou, Li-Qian; Wang, Roger Wei 2010 2010-06-22 COMM-USE N PMC2898692 20565983.0 10.1186/1471-2148-10-192 gf718lbl 0.305331 Zheng_2008, Chang_2011, Lee_C_2017, Cheng_2013, Wang_2013 Zhou_2017, Suzuki_2020
579 Eswar_2007 4.10 Comparative Modeling of Drug Target Proteins Eswar, N.; Sali, A. 2007 2007-12-31 PMC N PMC7151936 10.1016/b0-08-045044-x/00251-0 oqxh7egj 0.304594 Webb_2014, Bocharov_2018, Qi_Z_2018, Johnson_2018 Webb_2014, Ramajayam_2010, Wang_2013, Thanigaimalai_2013
580 Vinga_2013 Information theory applications for biological sequence analysis Vinga, Susana 2013 2013-09-20 PMC N PMC7109941 24058049.0 10.1093/bib/bbt068 jy22na69 0.302954 Sen_D_2018, Chang_2011, Liou_2013, Bocharov_2018, Gamermann_2014 Otsuka_1999, Coutinho_2015, Muppirala_2011, Gupta_2019
581 Wang_2010 Comparing early outbreak detection algorithms based on their optimized parameter values Wang, Xiaoli; Zeng, Daniel; Seale, Holly; Li, Su; Cheng, He; Luan, Rongsheng; He, Xiong; Pang, Xinghuo; Dou, Xiangfeng; Wang, Quanyi 2010 2010-02-28 PMC N 10.1016/j.jbi.2009.08.003 xailjga5 0.302619 Saw_A_2019, Polverino_2017, Lloyd_2009, Chang_2011 Bédubourg_2017, Glennon_2020, Zareie_2020
582 Simusika_2020 An evaluation of the Zambia influenza sentinel surveillance system, 2011–2017 Simusika, Paul; Tempia, Stefano; Chentulo, Edward; Polansky, Lauren; Mazaba, Mazyanga Lucy; Ndumba, Idah; Mbewe, Quinn K.; Monze, Mwaka 2020 2020-01-13 COMM-USE N PMC6958603 31931793.0 10.1186/s12913-019-4884-5 0pfrk5uk 0.302451 Polverino_2017, Griffiths_2010, Wei_B_2011, Rodier_2007, Mwabu_2008 Sáez-López_2019, Babakazo_2019, Yazidi_2019, Nuvey_2019
583 Zhang_2007 An emerging cyberinfrastructure for biodefense pathogen and pathogen–host data Zhang, C.; Crasta, O.; Cammer, S.; Will, R.; Kenyon, R.; Sullivan, D.; Yu, Q.; Sun, W.; Jha, R.; Liu, D.; Xue, T.; Zhang, Y.; Moore, M.; McGarvey, P.; Huang, H.; Chen, Y.; Zhang, J.; Mazumder, R.; Wu, C.; Sobral, B. 2007 2007-11-04 NONCOMM N PMC2239001 17984082.0 10.1093/nar/gkm903 0kkm0tgj 0.302359 UNKNOWN_2016, UNKNOWN_2018, O'Leary_2016, Cheng_2013, Wang_2006 McGarvey_2009, Anderson_2020, Niemeyer_2018, Tabares_2011
584 Njuguna_2014 A comparison of smartphones to paper-based questionnaires for routine influenza sentinel surveillance, Kenya, 2011–2012 Njuguna, Henry N; Caselton, Deborah L; Arunga, Geoffrey O; Emukule, Gideon O; Kinyanjui, Dennis K; Kalani, Rosalia M; Kinkade, Carl; Muthoka, Phillip M; Katz, Mark A; Mott, Joshua A 2014 2014-12-24 COMM-USE N PMC4305246 25539745.0 10.1186/s12911-014-0107-5 izw1xh21 0.302163 Rodier_2007, Murray_2017, UNKNOWN_2018, MacIntyre_2020 Lwin_2017, Malosh_2020, Lindblade_2011
585 Lau_M_2017 A mechanistic spatio-temporal framework for modelling individual-to-individual transmission—With an application to the 2014-2015 West Africa Ebola outbreak Lau, Max S. Y.; Gibson, Gavin J.; Adrakey, Hola; McClelland, Amanda; Riley, Steven; Zelner, Jon; Streftaris, George; Funk, Sebastian; Metcalf, Jessica; Dalziel, Benjamin D.; Grenfell, Bryan T. 2017 2017-10-30 None N PMC5679647 29084216.0 10.1371/journal.pcbi.1005798 a8w5cs6k 0.301995 Bocharov_2018, O'Dea_2010, Lumby_2018, He_D_2010 Routledge_2020, Routledge_2019
586 Gorbalenya_2008 Phylogeny of Viruses Gorbalenya, A.E. 2008 2008-12-31 PMC N PMC7150205 10.1016/b978-012374410-4.00712-3 5yk1j4ms 0.301138 Zheng_2008, Chang_2011, Kinene_2016, Francis_2016, Lee_C_2017 Gorbalenya_2017, Longdon_2018, Tibayrenc_2015, Longdon_2017
587 TANG_2007 Group Argumentation and Its Analysis on a Highlighted Social Event — Practice of Qualitative Meta-synthesis TANG, Xi-jin; LIU, Yi-jun 2007 2007-03-31 PMC N 10.1016/s1874-8651(08)60023-x s9eez11q 0.300856 Ropeik_2004, Mooney_2013, Walsh_2018, Haga_2006, UNKNOWN_2019 Neisser_2014, Matsuzaw_2011, Cheng_2020, Bdeir_2012
588 Liu_Y_2020 Deep Learning-Based Method of Diagnosing Hyperlipidemia and Providing Diagnostic Markers Automatically Liu, Yuliang; Zhang, Quan; Zhao, Geng; Liu, Guohua; Liu, Zhiang 2020 2020-03-11 NONCOMM N PMC7073442 10.2147/dmso.s242585 1r4gm2d4 0.300244 Polverino_2017, Zheng_2020, Bocharov_2018, Nelson_2012, Nelson_2012 Wang_2020, Chorba_2020