Topic 10 -- Abstracts with Biological Entities (English) - 75 Topics

cite ad title authors publish year publish time dataset abstract mentions covid pmcid pubmed id doi cord uid topic weight Similarity scispacy Similarity specter
1 Parthasarathy_2008 Transmembrane helices that form two opposite homodimeric interactions: An asparagine scan study of αM and β2 integrins Parthasarathy, Krupakar; Lin, Xin; Tan, Suet Mien; Law, S.K. Alex; Torres, Jaume 2008 2008-05-01 PMC N PMC2327277 18369198.0 10.1110/ps.073234208 rgfbee7h 0.906513 Ivarsson_2012, Smith_2003, UNKNOWN_1987, Yang_2012 Vasquez-Del_Carpio_2006, Moulaei_2010
2 Zhou_2011 The disposition of the LZCC protein residues in wenxiang diagram provides new insights into the protein–protein interaction mechanism Zhou, Guo-Ping 2011 2011-09-07 PMC N PMC7094099 21718705.0 10.1016/j.jtbi.2011.06.006 3ismyb4u 0.901515 Deng_2006, Ivarsson_2012, Liao_2006, UNKNOWN_1987, Langosch_2011 Cornish_2006, Vasquez-Del_Carpio_2006, Someya_2008, Wang_2013
3 Torres_2006 Model of a Putative Pore: The Pentameric α-Helical Bundle of SARS Coronavirus E Protein in Lipid Bilayers Torres, Jaume; Parthasarathy, Krupakar; Lin, Xin; Saravanan, Rathi; Kukol, Andreas; Liu, Ding Xiang 2006 2006-08-01 None N PMC1563757 16698774.0 10.1529/biophysj.105.080119 nx0rx1v4 0.888780 UNKNOWN_1987, Ivarsson_2012, Volmer_2010, UNKNOWN_1993, Gomis-Rüth_2003 Torres_2007, Voß_D_2009
4 Kwon_2018 Nucleic Acid-Dependent Structural Transition of the Intrinsically Disordered N-Terminal Appended Domain of Human Lysyl-tRNA Synthetase Kwon, Soon Bin; Yu, Ji Eun; Park, Chan; Lee, Jiseop; Seong, Baik L. 2018 2018-10-03 COMM-USE N PMC6213541 30282926.0 10.3390/ijms19103016 89u7de3i 0.860707 Hou_L_2014, Gorbalenya_1988, Ivarsson_2012, Pong_2011 Scrima_2004, Masters_1992, Faaberg_1996, YU_W_1995
5 Deng_2006 Antiparallel Four-Stranded Coiled Coil Specified by a 3-3-1 Hydrophobic Heptad Repeat Deng, Yiqun; Liu, Jie; Zheng, Qi; Eliezer, David; Kallenbach, Neville R.; Lu, Min 2006 2006-02-02 PMC N PMC7126439 16472744.0 10.1016/j.str.2005.10.010 rei5hea5 0.849952 Zhang_2018, Smith_2003, Ivarsson_2012, Sato_2019 Vasquez-Del_Carpio_2006, Scrima_2004, Cornish_2006
6 Ye_F_2018 Molecular basis of binding between the global post-transcriptional regulator CsrA and the T3SS chaperone CesT Ye, Fei; Yang, Fanli; Yu, Ruijie; Lin, Xi; Qi, Jianxun; Chen, Zhujun; Cao, Yu; Wei, Yuquan; Gao, George F.; Lu, Guangwen 2018 2018-03-22 COMM-USE N PMC5864733 29567971.0 10.1038/s41467-018-03625-x 6gem43t0 0.836197 Ivarsson_2012, Smith_2003, Sato_2019, Choudhury_2017 Scrima_2004, Vasquez-Del_Carpio_2006, Sato_2019
7 Olia_2009 Structural plasticity of the phage P22 tail needle gp26 probed with xenon gas Olia, Adam S; Casjens, Sherwood; Cingolani, Gino 2009 2009-01-01 PMC N PMC2760360 19241380.0 10.1002/pro.53 6b5c6vp7 0.828391 Ivarsson_2012, UNKNOWN_1987, Gomis-Rüth_2003, UNKNOWN_1993, Volmer_2010 Olia_2008, Effantin_2016
8 Bourhis_2009 The intrinsically disordered C‐terminal domain of the measles virus nucleoprotein interacts with the C‐terminal domain of the phosphoprotein via two distinct sites and remains predominantly unfolded Bourhis, Jean‐Marie; Receveur‐Bréchot, Véronique; Oglesbee, Michael; Zhang, Xinsheng; Buccellato, Matthew; Darbon, Hervé; Canard, Bruno; Finet, Stéphanie; Longhi, Sonia 2009 2009-01-01 PMC N PMC2279309 16046624.0 10.1110/ps.051411805 navrmhqm 0.819415 UNKNOWN_1987, Volmer_2010, Gomis-Rüth_2003, Ivarsson_2012, Pong_2011
9 Duquerroy_2005 Central ions and lateral asparagine/glutamine zippers stabilize the post-fusion hairpin conformation of the SARS coronavirus spike glycoprotein Duquerroy, Stéphane; Vigouroux, Armelle; Rottier, Peter J.M.; Rey, Félix A.; Jan Bosch, Berend 2005 2005-05-10 PMC N PMC7111771 15840526.0 10.1016/j.virol.2005.02.022 3laov764 0.808338 Deng_2006, UNKNOWN_1987, Zhang_2018, Wang_2014 Yan_Z_2006
10 Liou_2014 In Silico Analysis Reveals Sequential Interactions and Protein Conformational Changes during the Binding of Chemokine CXCL-8 to Its Receptor CXCR1 Liou, Je-Wen; Chang, Fang-Tzu; Chung, Yi; Chen, Wen-Yi; Fischer, Wolfgang B.; Hsu, Hao-Jen 2014 2014-04-04 COMM-USE N PMC3976404 24705928.0 10.1371/journal.pone.0094178 yuv8h375 0.795651 Ivarsson_2012, Smith_2003, Snyder_2005, UNKNOWN_1987 Wang_2013, Reuven_2014, Moulaei_2010, Li_G_2009
11 Serrano_2008 NMR assignment of the nonstructural protein nsp3(1066–1181) from SARS-CoV Serrano, Pedro; Johnson, Margaret A.; Chatterjee, Amarnath; Pedrini, Bill; Wüthrich, Kurt 2008 2008-07-22 None N PMC2776825 19636888.0 10.1007/s12104-008-9104-x oq0cyrd3 0.779779 Chang_2005, Chatterjee_2007, Puglisi_1990, Wang_2014 Chatterjee_2007, Johnson_2010
12 Chang_2013 Transient Oligomerization of the SARS-CoV N Protein – Implication for Virus Ribonucleoprotein Packaging Chang, Chung-ke; Chen, Chia-Min Michael; Chiang, Ming-hui; Hsu, Yen-lan; Huang, Tai-huang 2013 2013-05-23 COMM-USE N PMC3662775 23717688.0 10.1371/journal.pone.0065045 vf9n2vf9 0.778547 Ivarsson_2012, Smith_2003, Gomis-Rüth_2003, UNKNOWN_1987, Pong_2011 Voß_D_2009, Zhang_2015
13 Zhang_2018 Structural characterization of the HCoV-229E fusion core Zhang, Wei; Zheng, Qianqian; Yan, Mengrong; Chen, Xiaobo; Yang, Haitao; Zhou, Weihong; Rao, Zihe 2018 2018-03-04 PMC N PMC7092869 29458023.0 10.1016/j.bbrc.2018.02.136 pu3e8f69 0.774917 UNKNOWN_1987, UNKNOWN_1993, Ivarsson_2012, Chang_2000 Voß_D_2009
14 Gong_2005 Structural characterization of the fusion core in syncytin, envelope protein of human endogenous retrovirus family W Gong, Rui; Peng, Xiaoxue; Kang, Shuli; Feng, Huixing; Huang, Jianying; Zhang, Wentao; Lin, Donghai; Tien, Po; Xiao, Gengfu 2005 2005-06-17 PMC N PMC7092852 15883002.0 10.1016/j.bbrc.2005.04.032 xrw4vxvf 0.772281 UNKNOWN_1987, UNKNOWN_1993, Gomis-Rüth_2003, UNKNOWN_1993, Ivarsson_2012 Ruigrok_2019, Zhang_2015
15 Hodges_2009 Identification of a Unique “Stability Control Region” that Controls Protein Stability of Tropomyosin: A Two-Stranded α-Helical Coiled-Coil Hodges, Robert S.; Mills, Janine; McReynolds, Susanna; Kirwan, J. Paul; Tripet, Brian; Osguthorpe, David 2009 2009-09-01 PMC N PMC2756485 19627992.0 10.1016/j.jmb.2009.07.039 y2q9lw4f 0.770427 UNKNOWN_1987, Callison_1999, Yang_2012, Krause_1987, UNKNOWN_1993 Faaberg_1996, Chen_2009, Piñón_1997
16 Mascarenhas_2017 Understanding protein domain-swapping using structure-based models of protein folding Mascarenhas, Nahren Manuel; Gosavi, Shachi 2017 2017-09-30 PMC N PMC7127520 27867057.0 10.1016/j.pbiomolbio.2016.09.013 2paaybd0 0.768011 Ivarsson_2012, Kinjo_2012, Liu_Z_2008, Ruiz-Herrero_2015 Ziółkowska_2006, Hayashi_2016, Tong_2009
17 Huang_2016 Lys-315 at the Interfaces of Diagonal Subunits of δ-Crystallin Plays a Critical Role in the Reversibility of Folding and Subunit Assembly Huang, Chih-Wei; Lin, Hui-Chen; Chou, Chi-Yuan; Kao, Wei-Chuo; Chou, Wei-Yuan; Lee, Hwei-Jen 2016 2016-01-05 COMM-USE N PMC4701392 26731266.0 10.1371/journal.pone.0145957 ntqyjqqk 0.767734 Smith_2003, UNKNOWN_1987, Gomis-Rüth_2003, Volmer_2010, Diaz_2011 Someya_2008, Scrima_2004, Faaberg_1996, Strong_1991
18 Chang_2005 The dimer interface of the SARS coronavirus nucleocapsid protein adapts a porcine respiratory and reproductive syndrome virus-like structure Chang, Chung-ke; Sue, Shih-Che; Yu, Tsan-hung; Hsieh, Chiu-Min; Tsai, Cheng-Kun; Chiang, Yen-Chieh; Lee, Shin-jye; Hsiao, Hsin-hao; Wu, Wen-Jin; Chang, Chi-Fon; Huang, Tai-huang 2005 2005-10-24 PMC N PMC7094587 16214138.0 10.1016/j.febslet.2005.09.038 zv8lm4jf 0.736575 Gomis-Rüth_2003, Wang_2014, Pong_2011, Ivarsson_2012 Guillén_2009
19 Takeda_2008 Solution Structure of the C-terminal Dimerization Domain of SARS Coronavirus Nucleocapsid Protein Solved by the SAIL-NMR Method Takeda, Mitsuhiro; Chang, Chung-ke; Ikeya, Teppei; Güntert, Peter; Chang, Yuan-hsiang; Hsu, Yen-lan; Huang, Tai-huang; Kainosho, Masatsune 2008 2008-07-18 PMC N PMC7094413 18561946.0 10.1016/j.jmb.2007.11.093 sxflrz22 0.733459 Ivarsson_2012, UNKNOWN_1987, UNKNOWN_1993, Gomis-Rüth_2003, Smith_2003 Voß_D_2009, Wei_P_2006, Guillén_2009, Johnson_2010
20 Uversky_2013 The alphabet of intrinsic disorder: II. Various roles of glutamic acid in ordered and intrinsically disordered proteins Uversky, Vladimir N 2013 2013-04-01 NONCOMM N PMC5424795 28516010.0 10.4161/idp.24684 63gh2tg4 0.732918 Ivarsson_2012, Wu_G_2005, Staple_2005, Cosson_2013 Myllykoski_2017, Peng_2013
21 Langosch_2011 Helix-helix interaction patterns in membrane proteins Langosch, Dieter; Herrmann, Jana R.; Unterreitmeier, Stephanie; Fuchs, Angelika 2011 2011-01-04 PMC N PMC7123687 10.1007/978-3-7091-0045-5_10 mat3vf3r 0.728584 Ivarsson_2012, Smith_2003, Cosson_2013, Deng_2008 MacKenzie_2008, Chang_2008
22 Ruigrok_2019 X-ray Structures of the Post-fusion 6-Helix Bundle of the Human Syncytins and their Functional Implications Ruigrok, Katinka; Vaney, Marie-Christine; Buchrieser, Julian; Baquero, Eduard; Hellert, Jan; Baron, Bruno; England, Patrick; Schwartz, Olivier; Rey, Felix A.; Backovic, Marija 2019 2019-12-06 PMC N PMC7094397 31711961.0 10.1016/j.jmb.2019.10.020 i35azado 0.728578 Gomis-Rüth_2003, UNKNOWN_1987, Volmer_2010, Pong_2011, Ivarsson_2012 Gong_2005, Koellhoffer_2012
23 Maeda_2001 Membrane Topology of Coronavirus E Protein Maeda, Junko; Repass, John F.; Maeda, Akihiko; Makino, Shinji 2001 2001-03-15 PMC N PMC7130618 11277690.0 10.1006/viro.2001.0818 01nvlzdg 0.727988 UNKNOWN_1993, UNKNOWN_1987, UNKNOWN_1993, Volmer_2010 Voß_D_2009, UNKNOWN_1991, Kanjanahaluethai_2007, Chen_2009
24 Bitard‐Feildel_2018 Order in Disorder as Observed by the “Hydrophobic Cluster Analysis” of Protein Sequences Bitard‐Feildel, Tristan; Lamiable, Alexis; Mornon, Jean‐Paul; Callebaut, Isabelle 2018 2018-10-30 PMC N PMC7168002 30299594.0 10.1002/pmic.201800054 9eh8achd 0.726428 Staple_2005, Ivarsson_2012, Kinjo_2012, Baranov_2009
25 Singh_1999 LearnCoil-VMF: computational evidence for coiled-coil-like motifs in many viral membrane-fusion proteins 1 1 Edited by F. E. Cohen Singh, Mona; Berger, Bonnie; Kim, Peter S 1999 1999-07-30 PMC N PMC7125536 10438601.0 10.1006/jmbi.1999.2796 bdjiqym8 0.722537 Volmer_2010, Pong_2011, Gorbalenya_1988, Ivarsson_2012, Rice_1992 Peisajovich_2000
26 Steinbacher_1997 Phage P22 tailspike protein: crystal structure of the head-binding domain at 2.3 Å, fully refined structure of the endorhamnosidase at 1.56 Å resolution, and the molecular basis of O-antigen recognition and cleavage 1 1 Edited by K. Nagai Steinbacher, Stefan; Miller, Stefan; Baxa, Ulrich; Budisa, Nediljko; Weintraub, Andrej; Seckler, Robert; Huber, Robert 1997 1997-04-11 PMC N 9135118.0 10.1006/jmbi.1997.0922 b3shy00j 0.722403 UNKNOWN_1987, Gomis-Rüth_2003, Ivarsson_2012, UNKNOWN_1993, Smith_2003
27 Snyder_2005 The Structure of DC-SIGNR with a Portion of its Repeat Domain Lends Insights to Modeling of the Receptor Tetramer Snyder, Greg A.; Colonna, Marco; Sun, Peter D. 2005 2005-04-15 PMC N PMC7094344 15784257.0 10.1016/j.jmb.2005.01.063 ybncwweg 0.716527 Ivarsson_2012, Smith_2003, UNKNOWN_1987, Sato_2019 Moulaei_2010, Gramberg_2008
28 Spadaccini_2013 Mechanism of 3D domain swapping in bovine seminal ribonuclease Spadaccini, Roberta; Ercole, Carmine; Graziano, Giuseppe; Wechselberger, Rainer; Boelens, Rolf; Picone, Delia 2013 2013-12-13 PMC N PMC7164040 24616921.0 10.1111/febs.12651 3fciye8b 0.716383 Ivarsson_2012, Smith_2003, UNKNOWN_1987, Wang_2014, Gomis-Rüth_2003
29 Khattari_2006 SARS Coronavirus E Protein in Phospholipid Bilayers: An X-Ray Study Khattari, Z.; Brotons, G.; Akkawi, M.; Arbely, E.; Arkin, I.T.; Salditt, T. 2006 2006-03-15 None N PMC1386782 16361349.0 10.1529/biophysj.105.072892 u9wmzvkz 0.713417 Khattari_2006, Ivarsson_2012, UNKNOWN_1993, Polverino_2017 Voß_D_2009, Guillén_2009
30 Chen_2011 ORF8a of SARS-CoV forms an ion channel: Experiments and molecular dynamics simulations Chen, Cheng-Chang; Krüger, Jens; Sramala, Issara; Hsu, Hao-Jen; Henklein, Peter; Chen, Yi-Ming Arthur; Fischer, Wolfgang B. 2011 2011-02-28 None N PMC7094593 20708597.0 10.1016/j.bbamem.2010.08.004 7aw17jf8 0.711382 Deng_2006, Ivarsson_2012, Wang_2014, UNKNOWN_1993 Chen_2009, Wang_2013
31 Smaga_2018 MxB restricts HIV-1 by targeting the tri-hexamer interface of the viral capsid Sarah Sierra Smaga; Chaoyi Xu; Brady James Summers; Katherine Marie Digianantonio; Juan Roberto Perilla; Yong Xiong 2018 2018-10-15 BioRxiv N 10.1101/444067 jdoax8co 0.711096 Pong_2011, Gomis-Rüth_2003, Stork_2011, Kang_2009, Volmer_2010 Masante_2015
32 Ni_L_2005 Rational design of highly potent HIV-1 fusion inhibitory proteins: Implication for developing antiviral therapeutics Ni, Ling; Gao, George F.; Tien, Po 2005 2005-07-08 PMC N PMC7092902 15913557.0 10.1016/j.bbrc.2005.05.037 lqioamh6 0.709517 Pong_2011, UNKNOWN_1987, Gomis-Rüth_2003, Chang_2000, Dey_A_2009 Zhu_X_2015, Veiga_2006, Yuan_2004
33 Ni_L_2005 Design of recombinant protein-based SARS-CoV entry inhibitors targeting the heptad-repeat regions of the spike protein S2 domain Ni, Ling; Zhu, Jieqing; Zhang, Junjie; Yan, Meng; Gao, George F.; Tien, Po 2005 2005-04-29 PMC N PMC7092889 15781229.0 10.1016/j.bbrc.2005.02.117 jqxad6ao 0.708822 UNKNOWN_1987, Pong_2011, Chang_2000, Volmer_2010, Kang_2009 Yuan_2004, Yan_Z_2006, Liu_I_2009, Guillén_2009
34 Yan_Z_2006 Biophysical characterization of HRC peptide analogs interaction with heptad repeat regions of the SARS-coronavirus Spike fusion protein core Yan, Zhe; Tripet, Brian; Hodges, Robert S. 2006 2006-08-31 PMC N PMC7129827 16765058.0 10.1016/j.jsb.2006.03.024 r3a3cnnh 0.706888 Ivarsson_2012, UNKNOWN_1987, Smith_2003, Yang_2012, Volmer_2010 Yuan_2004, Guillén_2009, Zhang_2018, Liu_S_2004
35 Follis_2005 Serine-scanning mutagenesis studies of the C-terminal heptad repeats in the SARS coronavirus S glycoprotein highlight the important role of the short helical region Follis, Kathryn E.; York, Joanne; Nunberg, Jack H. 2005 2005-10-10 PMC N PMC7111819 16081124.0 10.1016/j.virol.2005.07.005 yojc19ly 0.698797 UNKNOWN_1987, Chang_2000, UNKNOWN_1993, UNKNOWN_1993, Gomis-Rüth_2003 Yan_Z_2006
36 Deng_2008 A Heterospecific Leucine Zipper Tetramer Deng, Yiqun; Liu, Jie; Zheng, Qi; Li, Qunnu; Kallenbach, Neville R.; Lu, Min 2008 2008-09-22 PMC N PMC7111190 18804028.0 10.1016/j.chembiol.2008.07.008 kcbn3h3y 0.696041 Ivarsson_2012, Langosch_2011, Sundaramoorthy_2018, Smith_2003 Moulaei_2010, Buller_2012, Myllykoski_2017
37 Celigoy_2011 The SARS-CoV heptad repeat 2 exhibits pH-induced helix formation Celigoy, Jessica; McReynolds, Susanna; Caffrey, Michael 2011 2011-09-02 PMC N PMC7092892 21835164.0 10.1016/j.bbrc.2011.07.126 xzscrl9h 0.689900 Smith_2003, Pong_2011, UNKNOWN_1987, Gomis-Rüth_2003 Yuan_2004, Yan_Z_2006, Frick_2020, Cheng_2010
38 Lo_Y_2013 Oligomerization of the carboxyl terminal domain of the human coronavirus 229E nucleocapsid protein Lo, Yu-Sheng; Lin, Shing-Yen; Wang, Shiu-Mei; Wang, Chin-Tien; Chiu, Ya-Li; Huang, Tai-Huang; Hou, Ming-Hon 2013 2013-01-16 PMC N PMC7089611 23178926.0 10.1016/j.febslet.2012.11.016 vbrzmnoh 0.689510 Smith_2003, UNKNOWN_1987, Ivarsson_2012, Chang_2000 Voß_D_2009, Zhang_2015
39 Torres_2007 Conductance and amantadine binding of a pore formed by a lysine-flanked transmembrane domain of SARS coronavirus envelope protein Torres, Jaume; Maheswari, Uma; Parthasarathy, Krupakar; Ng, Lifang; Liu, Ding Xiang; Gong, Xiandi 2007 2007-09-01 PMC N PMC2206980 17766393.0 10.1110/ps.062730007 menw48x2 0.689470 UNKNOWN_1987, Chang_2000, UNKNOWN_1993, Volmer_2010, UNKNOWN_1993 Voß_D_2009, Guillén_2009
40 Lin_X_2006 Two types of transmembrane homomeric interactions in the integrin receptor family are evolutionarily conserved Lin, Xin; Tan, Suet Mien; Law, S.K. Alex; Torres, Jaume 2006 2006-01-27 PMC N PMC7168044 16444740.0 10.1002/prot.20882 np4nr7gg 0.689212 Ivarsson_2012, Parthasarathy_2008, Smith_2003, Leung_2012
41 Bongini_2020 A possible strategy to fight COVID-19: Interfering with spike glycoprotein trimerization Bongini, Pietro; Trezza, Alfonso; Bianchini, Monica; Spiga, Ottavia; Niccolai, Neri 2020 2020-04-09 PMC Y 10.1016/j.bbrc.2020.04.007 cqx306yh 0.688547 Ivarsson_2012, Volmer_2010, Gomis-Rüth_2003, Li_F_2016, Naito_2007 Vankadari_2020, Guillén_2009, Yuan_2004
42 Kosol_2010 Dynamics and orientation of a cationic antimicrobial peptide in two membrane-mimetic systems Kosol, Simone; Zangger, Klaus 2010 2010-04-30 PMC N PMC7128155 20045466.0 10.1016/j.jsb.2009.12.026 l8f4shar 0.687714 Ivarsson_2012, Ge_M_2011, Gomis-Rüth_2003, Wang_2014, UNKNOWN_1987 D’Errico_2009, Chang_2008, UNKNOWN_1989
43 Leone_1991 The N-terminal heptad repeat region of reovirus cell attachment protein σ1 is responsible for σ1 oligomer stability and possesses intrinsic oligomerization function Leone, Gustavo; Duncan, Roy; Mah, David C.W.; Price, Angela; Cashdollar, L.William; Lee, Patrick W.K. 1991 1991-05-31 PMC N PMC7130816 2024469.0 10.1016/0042-6822(91)90677-4 t6e7vr9y 0.686511 UNKNOWN_1987, UNKNOWN_1993, Deng_2006, Smith_2003 Strong_1991, Piñón_1997
44 Zhang_2018 Identification and application of self-binding zipper-like sequences in SARS-CoV spike protein Zhang, Si Min; Liao, Ying; Neo, Tuan Ling; Lu, Yanning; Liu, Ding Xiang; Vahlne, Anders; Tam, James P. 2018 2018-08-31 PMC N PMC7108413 29800727.0 10.1016/j.biocel.2018.05.012 u1e99bov 0.686434 Ivarsson_2012, UNKNOWN_1987, UNKNOWN_1993, Morikawa_1992, Luytjes_1988 Yuan_2004
45 Torres_2005 The Transmembrane Oligomers of Coronavirus Protein E Torres, Jaume; Wang, Jifeng; Parthasarathy, Krupakar; Liu, Ding Xiang 2005 2005-02-28 None N PMC1305130 15713601.0 10.1529/biophysj.104.051730 okm2fdyl 0.681442 UNKNOWN_1987, Volmer_2010, Ivarsson_2012, Yang_2012, Chang_2000 Voß_D_2009, Chen_2009, Kanjanahaluethai_2007
46 Bos_M_1999 Homologue Scanning Mutagenesis Reveals Cd66 Receptor Residues Required for Neisserial Opa Protein Binding Bos, Martine P.; Hogan, Daniel; Belland, Robert J. 1999 1999-08-02 NONCOMM N PMC2195581 10430622.0 o21ssh9v 0.680024 Ivarsson_2012, Volmer_2010, UNKNOWN_1987, Smith_2003
47 Mahajan_2015 NMR structures and localization of the potential fusion peptides and the pre-transmembrane region of SARS-CoV: Implications in membrane fusion Mahajan, Mukesh; Bhattacharjya, Surajit 2015 2015-02-28 PMC N PMC7094234 25475644.0 10.1016/j.bbamem.2014.11.025 zkdyyepy 0.679292 UNKNOWN_1987, Ivarsson_2012, Wang_2014, UNKNOWN_1993, UNKNOWN_1993 Guillén_2009, Voß_D_2009, Guillén_2008, Chen_2009
48 Kandeel_2018 Molecular dynamics of Middle East Respiratory Syndrome Coronavirus (MERS CoV) fusion heptad repeat trimers Kandeel, Mahmoud; Al-Taher, Abdulla; Li, Huifang; Schwingenschlogl, Udo; Al-Nazawi, Mohamed 2018 2018-08-31 PMC N PMC7106505 29803965.0 10.1016/j.compbiolchem.2018.05.020 e2wkol48 0.677534 Zhang_2018, Deng_2006, Callison_1999, UNKNOWN_1987 Channappanavar_2015, Thornbrough_2016, Xia_S_2019, Lu_L_2014
49 Chen_2007 Structure of the SARS Coronavirus Nucleocapsid Protein RNA-binding Dimerization Domain Suggests a Mechanism for Helical Packaging of Viral RNA Chen, Chun-Yuan; Chang, Chung-ke; Chang, Yi-Wei; Sue, Shih-Che; Bai, Hsin-I; Riang, Lilianty; Hsiao, Chwan-Deng; Huang, Tai-huang 2007 2007-05-11 PMC N PMC7094638 17379242.0 10.1016/j.jmb.2007.02.069 0p3me0cs 0.677081 Pong_2011, Gomis-Rüth_2003, Volmer_2010, Kang_2009, UNKNOWN_1987 Masters_1992
50 Luo_H_2006 Severe acute respiratory syndrome coronavirus membrane protein interacts with nucleocapsid protein mostly through their carboxyl termini by electrostatic attraction Luo, Haibin; Wu, Dalei; Shen, Can; Chen, Kaixian; Shen, Xu; Jiang, Hualiang 2006 2006-12-31 PMC N PMC7108423 16343974.0 10.1016/j.biocel.2005.10.022 o2tbqf4e 0.675863 Volmer_2010, Ivarsson_2012, UNKNOWN_1987, Gomis-Rüth_2003, Chang_2000 Zhang_2015, Voß_D_2009, Chen_2009
51 Vazquez_2017 Comprehensive structural analysis of designed incomplete polypeptide chains of the replicase nonstructural protein 1 from the severe acute respiratory syndrome coronavirus Vazquez, Leonardo; e Lima, Luis Mauricio Trambaioli da Rocha; Almeida, Marcius da Silva 2017 2017-07-27 COMM-USE N PMC5531528 28750053.0 10.1371/journal.pone.0182132 43h1r4pm 0.674491 UNKNOWN_1987, Ivarsson_2012, Wu_G_2005, Krause_1987, Morikawa_1992 Voß_D_2009
52 Lupala_2020 Computational simulations reveal the binding dynamics between human ACE2 and the receptor binding domain of SARS-CoV-2 spike protein Cecylia S. Lupala; Xuanxuan Li; Jian Lei; Hong Chen; Jianxun Qi; Haiguang Liu; Xiao-dong Su 2020 2020-03-27 BioRxiv Y 10.1101/2020.03.24.005561 kifqgskc 0.672136 Ivarsson_2012, UNKNOWN_1987, Callison_1999, Volmer_2010, Smith_2003 Zhang_2009, Guillén_2009, Chowdhury_2020, Wang_2020
53 Ou_X_2017 Crystal structure of the receptor binding domain of the spike glycoprotein of human betacoronavirus HKU1 Ou, Xiuyuan; Guan, Hongxin; Qin, Bo; Mu, Zhixia; Wojdyla, Justyna A.; Wang, Meitian; Dominguez, Samuel R.; Qian, Zhaohui; Cui, Sheng 2017 2017-05-23 COMM-USE N PMC5529671 28534504.0 10.1038/ncomms15216 83x77xte 0.671393 Hao_W_2017, UNKNOWN_1987, Pong_2011, Volmer_2010, Gomis-Rüth_2003 Guillén_2009, Elshabrawy_2012, Voß_D_2009
54 Zhu_Y_2016 Rational improvement of gp41-targeting HIV-1 fusion inhibitors: an innovatively designed Ile-Asp-Leu tail with alternative conformations Zhu, Yun; Su, Shan; Qin, Lili; Wang, Qian; Shi, Lei; Ma, Zhenxuan; Tang, Jianchao; Jiang, Shibo; Lu, Lu; Ye, Sheng; Zhang, Rongguang 2016 2016-09-26 COMM-USE N PMC5036048 27666394.0 10.1038/srep31983 7dj6slbx 0.670191 UNKNOWN_1987, Gomis-Rüth_2003, Ivarsson_2012, Pong_2011, Smith_2003 Zhu_X_2015
55 Gur_M_2020 Exploring Conformational Transition of 2019 Novel Coronavirus Spike Glycoprotein Between Its Closed and Open States Using Molecular Dynamics Simulations Mert Gur; Elhan Taka; Sema Zeynep Yilmaz; Ceren Kilinc; Umut Aktas; Mert Golcuk 2020 2020-04-19 BioRxiv Y 10.1101/2020.04.17.047324 o14tj8fi 0.667148 UNKNOWN_1987, Ivarsson_2012, Callison_1999, Chan_2016, Guo_Y_2013
56 Wang_2007 Accurate Reproduction of 161 Small-Molecule Complex Crystal Structures using the EUDOC Program: Expanding the Use of EUDOC to Supramolecular Chemistry Wang, Qi; Pang, Yuan-Ping 2007 2007-06-13 COMM-USE N PMC1888730 17565384.0 10.1371/journal.pone.0000531 be2ith3z 0.664833 Ivarsson_2012, Kinjo_2012, Guo_Y_2013, Staple_2005, Chan_2016 Wang_2013, Lee_T_2007, Li_G_2009, Becker_2016
57 Wang_2014 Structural models of the membrane anchors of envelope glycoproteins E1 and E2 from pestiviruses Wang, Jimin; Li, Yue; Modis, Yorgo 2014 2014-04-30 PMC N 24725935.0 10.1016/j.virol.2014.02.015 bn1q17q2 0.664251 Gomis-Rüth_2003, UNKNOWN_1987, Ivarsson_2012, UNKNOWN_1993
58 Yuan_2017 Cryo-EM structures of MERS-CoV and SARS-CoV spike glycoproteins reveal the dynamic receptor binding domains Yuan, Yuan; Cao, Duanfang; Zhang, Yanfang; Ma, Jun; Qi, Jianxun; Wang, Qihui; Lu, Guangwen; Wu, Ying; Yan, Jinghua; Shi, Yi; Zhang, Xinzheng; Gao, George F. 2017 2017-04-10 COMM-USE N PMC5394239 28393837.0 10.1038/ncomms15092 094lgjnn 0.663936 Pong_2011, Volmer_2010, Tallmadge_2008, Gomis-Rüth_2003, Rice_1992 Elshabrawy_2012, Song_2018, Yuan_2004
59 Tseng_2013 Identifying SARS-CoV Membrane Protein Amino Acid Residues Linked to Virus-Like Particle Assembly Tseng, Ying-Tzu; Chang, Chia-Hui; Wang, Shiu-Mei; Huang, Kuo-Jung; Wang, Chin-Tien 2013 2013-05-20 COMM-USE N PMC3659117 23700447.0 10.1371/journal.pone.0064013 951xny9u 0.662870 Yang_2012, UNKNOWN_1987, Chang_2000, Volmer_2010, Yang_2010 Voß_D_2009, Chen_2009
60 Gui_M_2016 Cryo-electron microscopy structures of the SARS-CoV spike glycoprotein reveal a prerequisite conformational state for receptor binding Gui, Miao; Song, Wenfei; Zhou, Haixia; Xu, Jingwei; Chen, Silian; Xiang, Ye; Wang, Xinquan 2016 2016-12-23 PMC N PMC5223232 28008928.0 10.1038/cr.2016.152 rrqevyj4 0.660155 Gomis-Rüth_2003, UNKNOWN_1987, Volmer_2010, Pong_2011, Li_F_2016 Song_2018, Voß_D_2009, Walls_2016
61 Shi_W_2008 Novel anti-HIV peptides containing multiple copies of artificially designed heptad repeat motifs Shi, Weiguo; Qi, Zhi; Pan, Chungen; Xue, Na; Debnath, Asim K.; Qie, Jiankun; Jiang, Shibo; Liu, Keliang 2008 2008-10-03 None N PMC2597519 18682248.0 10.1016/j.bbrc.2008.07.134 zh93ehf1 0.659263 Naito_2007, Ivarsson_2012, Gorbalenya_1988, UNKNOWN_1987 Zhu_X_2015, Yuan_2004
62 Celigoy_2011 SARS-CoV heptad repeat 2 is a trimer of parallel helices Celigoy, Jessica; Ramirez, Benjamin; Caffrey, Michael 2011 2011-11-01 PMC N PMC3302656 21922588.0 10.1002/pro.736 urltme7d 0.657390 UNKNOWN_1987, Ivarsson_2012, Gomis-Rüth_2003, Smith_2003 Yuan_2004, Guillén_2009, Yan_Z_2006, Wei_P_2006
63 Wang_2015 De novo design of isopeptide bond-tethered triple-stranded coiled coils with exceptional resistance to unfolding and proteolysis: implication for developing antiviral therapeutics Wang, Chao; Lai, Wenqing; Yu, Fei; Zhang, Tianhong; Lu, Lu; Jiang, Xifeng; Zhang, Zhenqing; Xu, Xiaoyu; Bai, Yu; Jiang, Shibo; Liu, Keliang 2015 2015-11-01 COMM-USE N PMC6054081 30090269.0 10.1039/c5sc02220g r0ueakuu 0.657100 Pong_2011, Gomis-Rüth_2003, Stork_2011, Ivarsson_2012 Wang_2018
64 Jin_F_2013 Ligand Clouds around Protein Clouds: A Scenario of Ligand Binding with Intrinsically Disordered Proteins Jin, Fan; Yu, Chen; Lai, Luhua; Liu, Zhirong 2013 2013-10-03 COMM-USE N PMC3789766 24098099.0 10.1371/journal.pcbi.1003249 5l0fthw3 0.656888 Ivarsson_2012, Smith_2003, Staple_2005, Chan_2016, Kirillova_2009 Wang_2013, RAMAKRISHNA_2015, Becker_2016, Liou_2014
65 Parthasarathy_2008 Structural Flexibility of the Pentameric SARS Coronavirus Envelope Protein Ion Channel Parthasarathy, Krupakar; Ng, Lifang; Lin, Xin; Liu, Ding Xiang; Pervushin, Konstantin; Gong, Xiandi; Torres, Jaume 2008 2008-09-15 None N PMC2527252 18658207.0 10.1529/biophysj.108.133041 cqhytos1 0.655589 UNKNOWN_1987, UNKNOWN_1993, Ivarsson_2012, Gomis-Rüth_2003, UNKNOWN_1993 Torres_2007
66 de_Groot_1987 Evidence for a coiled-coil structure in the spike proteins of coronaviruses de Groot, R.J.; Luytjes, W.; Horzinek, M.C.; van der Zeijst, B.A.M.; Spaan, W.J.M.; Lenstra, J.A. 1987 1987-08-20 PMC N 3681988.0 10.1016/0022-2836(87)90422-0 5952zazu 0.651354 Luytjes_1988, UNKNOWN_1987, Gorbalenya_1988, Volmer_2010, Krause_1987
67 Renzi_2020 ACE2 fragment as a decoy for novel SARS-Cov-2 virus Fabiana Renzi; Dario Ghersi 2020 2020-04-10 BioRxiv Y 10.1101/2020.04.06.028647 77ku0164 0.651354 Ivarsson_2012, UNKNOWN_1987, Smith_2003, Greene_2012, Chan_2016 Haga_2010, Zhang_2009, Guillén_2009, Wu_Zhang_2004
68 Hastie_2018 Lassa virus glycoprotein: stopping a moving target Hastie, Kathryn M; Saphire, Erica Ollmann 2018 2018-08-31 PMC N PMC6193841 29843991.0 10.1016/j.coviro.2018.05.002 vmxy3hqk 0.648648 Pong_2011, Gomis-Rüth_2003, Volmer_2010, Dey_A_2009 Koellhoffer_2012
69 Lin_S_2020 Structure-Based Stabilization of Non-native Protein–Protein Interactions of Coronavirus Nucleocapsid Proteins in Antiviral Drug Design Lin, Shan-Meng; Lin, Shih-Chao; Hsu, Jia-Ning; Chang, Chung-ke; Chien, Ching-Ming; Wang, Yong-Sheng; Wu, Hung-Yi; Jeng, U-Ser; Kehn-Hall, Kylene; Hou, Ming-Hon 2020 2020-02-27 PMC N PMC7094172 32105468.0 10.1021/acs.jmedchem.9b01913 rn4gm3sc 0.648391 Ivarsson_2012, Smith_2003, Langosch_2011, Pong_2011, Gomis-Rüth_2003 Wang_2013, Voß_D_2009, Zhang_2015
70 Rowland_2003 Peptide domains involved in the localization of the porcine reproductive and respiratory syndrome virus nucleocapsid protein to the nucleolus Rowland, Raymond R.R.; Schneider, Paula; Fang, Ying; Wootton, Sarah; Yoo, Dongwan; Benfield, David A. 2003 2003-11-10 PMC N PMC7125632 14599798.0 10.1016/s0042-6822(03)00482-3 dyxswe9o 0.648308 UNKNOWN_1993, Volmer_2010, UNKNOWN_1987, UNKNOWN_1993, UNKNOWN_1993 Zhou_2000
71 Guo_L_2015 Interaction Behavior Between Niclosamide and Pepsin Determined by Spectroscopic and Docking Methods Guo, Liuqi; Ma, Xiaoli; Yan, Jin; Xu, Kailin; Wang, Qing; Li, Hui 2015 2015-09-26 PMC N PMC7087788 26410777.0 10.1007/s10895-015-1655-5 83t5mlpr 0.648012 Chan_2016, Ivarsson_2012, Smith_2003, Langosch_2011 Maltas_2014, Sun_Y_2008, Moulaei_2010, Vicente_2015
72 Huang_2009 Elucidation of the stability and functional regions of the human coronavirus OC43 nucleocapsid protein Huang, Chun-Yu; Hsu, Yen-Lan; Chiang, Wan-Ling; Hou, Ming-Hon 2009 2009-11-01 PMC N PMC2788276 19691129.0 10.1002/pro.225 5c0ho2jx 0.647654 Pong_2011, Volmer_2010, Kang_2009, Gorbalenya_1988, UNKNOWN_1987 Zhang_2015, Chen_2013, Li_S_2016
73 Melo_2009 Interaction of the Dengue Virus Fusion Peptide with Membranes Assessed by NMR: The Essential Role of the Envelope Protein Trp101 for Membrane Fusion Melo, Manuel Nuno; Sousa, Francisco J.R.; Carneiro, Fabiana A.; Castanho, Miguel A.R.B.; Valente, Ana Paula; Almeida, Fabio C.L.; Da Poian, Andrea T.; Mohana-Borges, Ronaldo 2009 2009-09-25 None N PMC7094664 19619560.0 10.1016/j.jmb.2009.07.035 8y9e08v1 0.645269 UNKNOWN_1987, UNKNOWN_1993, UNKNOWN_1993, Ivarsson_2012, Gomis-Rüth_2003 Peisajovich_2000, Chang_2008, Voß_D_2009, Guillén_2009
74 Zunaid_2020 Significance of hydrophobic and charged sequence similarities in sodium-bile acid cotransporter and vitamin D-binding protein macrophage activating factor Ibne Raihan Zunaid; Stefania Pacini; Marco Ruggiero 2020 2020-03-05 BioRxiv N 10.1101/2020.03.03.975524 3ybko13r 0.645043 Ivarsson_2012, UNKNOWN_1987, Luytjes_1988, Yang_2012, UNKNOWN_1993 Faaberg_1996, Selcuk_Unal_2008
75 Sadasivan_2017 Cytoplasmic tail of coronavirus spike protein has intracellular targeting signals Sadasivan, Jibin; Singh, Manmeet; Sarma, Jayasri Das 2017 2017-04-18 PMC N PMC7091306 28569247.0 10.1007/s12038-017-9676-7 7sjw5ci7 0.642954 Volmer_2010, UNKNOWN_1987, UNKNOWN_1993, UNKNOWN_1993 Chang_2000
76 Chen_2013 Crystal structure-based exploration of the important role of Arg106 in the RNA-binding domain of human coronavirus OC43 nucleocapsid protein Chen, I.-Jung; Yuann, Jeu-Ming P.; Chang, Yu-Ming; Lin, Shing-Yen; Zhao, Jincun; Perlman, Stanley; Shen, Yo-Yu; Huang, Tai-Huang; Hou, Ming-Hon 2013 2013-06-30 None N PMC3774783 23501675.0 10.1016/j.bbapap.2013.03.003 70o0i7ft 0.642918 Pong_2011, Kang_2009, Volmer_2010, Stork_2011, Gorbalenya_1988 Masters_1992
77 Indu_2009 Disulfide conformation and design at helix N‐termini Indu, S.; Kumar, Senthil T.; Thakurela, Sudhir; Gupta, Mansi; Bhaskara, Ramachandra M.; Ramakrishnan, C.; Varadarajan, Raghavan 2009 2009-10-20 PMC N PMC7167797 19938155.0 10.1002/prot.22641 jqzb67xz 0.642437 Deng_2006, Smith_2003, Yang_2012, Sato_2019, Sundaramoorthy_2018
78 Cohan_2018 Evolved sequence features within the intrinsically disordered tail influence FtsZ assembly and bacterial cell division Megan C. Cohan; Ammon E. Posey; Steven J. Grigsby; Anuradha Mittal; Alex S. Holehouse; Paul J. Buske; Petra A. Levin; Rohit V. Pappu 2018 2018-04-14 BioRxiv N 10.1101/301622 2rzfuy33 0.642016 Ivarsson_2012, Wu_G_2005, UNKNOWN_1987, Morikawa_1992 Michalska_2018, Olia_2008
79 Crone_2020 Modulation of Coiled-Coil Binding Strength and Fusogenicity through Peptide Stapling Crone, Niek S.\nA.; Kros, Alexander; Boyle, Aimee L. 2020 2020-02-14 PMC N PMC7086394 32058706.0 10.1021/acs.bioconjchem.0c00009 w61sqy17 0.641559 Ivarsson_2012, UNKNOWN_1987, Smith_2003, Wang_2014, Gomis-Rüth_2003 Buller_2012, D’Errico_2009, Moulaei_2010
80 Luo_H_2004 In vitro biochemical and thermodynamic characterization of nucleocapsid protein of SARS Luo, Haibin; Ye, Fei; Sun, Tao; Yue, Liduo; Peng, Shuying; Chen, Jing; Li, Guowei; Du, Yi; Xie, Youhua; Yang, Yiming; Shen, Jianhua; Wang, Yuan; Shen, Xu; Jiang, Hualiang 2004 2004-12-01 PMC N PMC7116930 15501572.0 10.1016/j.bpc.2004.06.008 mmlh9i1o 0.641074 Guo_Y_2013, Chan_2016, Gomis-Rüth_2003, Ivarsson_2012 Graziano_2006, Zhang_2015, Wei_P_2006
81 Apgar_2008 Predicting helix orientation for coiled-coil dimers Apgar, James R.; Gutwin, Karl N.; Keating, Amy E. 2008 2008-05-27 PMC N PMC2562949 18506779.0 10.1002/prot.22118 l7p84aur 0.635282 Ivarsson_2012, Liao_2006, Kinjo_2012, Chang_2011 Lupas_2017, Deng_2006, McFarlane_2009
82 Pierson_2018 Engineered Protein Model of the ATP synthase H(+)- Channel Shows No Salt Bridge at the Rotor-Stator Interface Pierson, Hannah E.; Kaler, Mandeep; O’Grady, Christopher; Uhlemann, Eva-Maria E.; Dmitriev, Oleg Y. 2018 2018-07-27 COMM-USE N PMC6063947 30054535.0 10.1038/s41598-018-29693-z atj3fad6 0.633469 Ivarsson_2012, UNKNOWN_1987, UNKNOWN_1993, Smith_2003, UNKNOWN_1993 Faaberg_1996, Scrima_2004, Myllykoski_2017, Huang_2016
83 Gan_S_2008 Structure and ion channel activity of the human respiratory syncytial virus (hRSV) small hydrophobic protein transmembrane domain Gan, Siok Wan; Ng, Lifang; Lin, Xin; Gong, Xiandi; Torres, Jaume 2008 2008-05-01 PMC N PMC2327286 18369195.0 10.1110/ps.073366208 i5thcbze 0.632941 UNKNOWN_1987, Ivarsson_2012, Volmer_2010, Gomis-Rüth_2003, UNKNOWN_1993 Voß_D_2009, Kanjanahaluethai_2007
84 Ghosh_2015 Self-Assembly of a 9-Residue Amyloid-Forming Peptide Fragment of SARS Corona Virus E-protein: Mechanism of Self Aggregation and Amyloid-Inhibition of hIAPP Ghosh, Anirban; Pithadia, Amit S.; Bhat, Jyotsna; Bera, Supriyo; Midya, Anupam; Fierke, Carol A.; Ramamoorthy, Ayyalusamy; Bhunia, Anirban 2015 2015-03-24 PMC N PMC4903029 25785896.0 10.1021/acs.biochem.5b00061 b0v178qy 0.627824 Ivarsson_2012, Sivanesam_2019, Cosson_2013, Hurley_2014, Ruiz-Herrero_2015 Voß_D_2009, Guillén_2009, Abad_2009, Yin_J_2005
85 MacKenzie_2008 Association energetics of membrane spanning α-helices MacKenzie, Kevin R; Fleming, Karen G 2008 2008-08-31 PMC N PMC7127525 18539023.0 10.1016/j.sbi.2008.04.007 61cs7r9f 0.625994 Langosch_2011, Deng_2008, Ruiz-Herrero_2015, Ivarsson_2012 Langosch_2011, Chang_2008
86 Fan_S_2009 Conformational changes in redox pairs of protein structures Fan, Samuel W; George, Richard A; Haworth, Naomi L; Feng, Lina L; Liu, Jason Y; Wouters, Merridee A 2009 2009-08-01 PMC N PMC2776962 19598234.0 10.1002/pro.175 d3gcfepx 0.625710 Ivarsson_2012, Staple_2005, Langosch_2011, Smith_2003 Myllykoski_2017, Buller_2012, Stolf_2011
87 Sanavio_2007 Helicity propensity and interaction of synthetic peptides from heptad-repeat domains of herpes simplex virus 1 glycoprotein H: A circular dichroism study Sanavio, Barbara; Piccoli, Angela; Gianni, Tatiana; Bertucci, Carlo 2007 2007-07-31 PMC N 17560181.0 10.1016/j.bbapap.2007.04.019 dzft350s 0.624510 Guo_Y_2013, Volmer_2010, Wu_G_2005, Qi_Z_2018, Callison_1999 Kanitz_2019, Rozanov_1995, Yan_Z_2006
88 Maltas_2014 Binding interactions of niclosamide with serum proteins Maltas, Esra 2014 2014-12-31 PMC N PMC7129377 28911473.0 10.1016/j.jfda.2014.03.004 mmafv2b5 0.624463 Langosch_2011, Chan_2016, Ivarsson_2012, Kinjo_2012 Guo_L_2015, Moulaei_2010, de_Souza_2006, Huang_2005
89 Das_J_2016 Mathematical Characterization of Protein Sequences Using Patterns as Chemical Group Combinations of Amino Acids Das, Jayanta Kumar; Das, Provas; Ray, Korak Kumar; Choudhury, Pabitra Pal; Jana, Siddhartha Sankar 2016 2016-12-08 COMM-USE N PMC5145171 27930687.0 10.1371/journal.pone.0167651 ifebw24e 0.623947 Wu_G_2005, Ivarsson_2012, Chang_2011, Qi_Z_2018, Luytjes_1988 Das_J_2017, Otsuka_1999
90 Xu_Y_2004 Construct design, biophysical, and biochemical characterization of the fusion core from mouse hepatitis virus (a coronavirus) spike protein Xu, Yanhui; Cole, David K.; Lou, Zhiyong; Liu, Yiwei; Qin, Lan; Li, Xu; Bai, Zhihong; Yuan, Fang; Rao, Zihe; Gao, George F. 2004 2004-11-30 PMC N PMC7128687 15477089.0 10.1016/j.pep.2004.08.005 ai88ansm 0.622128 Pong_2011, Gomis-Rüth_2003, Kang_2009, UNKNOWN_1987, Meyerson_2017 Chang_2000
91 Liu_S_2004 Interaction between heptad repeat 1 and 2 regions in spike protein of SARS-associated coronavirus: implications for virus fusogenic mechanism and identification of fusion inhibitors Liu, Shuwen; Xiao, Gengfu; Chen, Yibang; He, Yuxian; Niu, Jinkui; Escalante, Carlos R; Xiong, Huabao; Farmar, James; Debnath, Asim K; Tien, Po; Jiang, Shibo 2004 2004-03-20 PMC N PMC7140173 15043961.0 10.1016/s0140-6736(04)15788-7 c1ragbqw 0.619995 Pong_2011, Gomis-Rüth_2003, UNKNOWN_1987, Zhang_2019, Dey_A_2009 Yuan_2004, Guillén_2009, Veiga_2006, Yan_Z_2006
92 Blicher_2005 High‐resolution structure of HLA‐A*1101 in complex with SARS nucleocapsid peptide Blicher, Thomas; Kastrup, Jette Sandholm; Buus, Søren; Gajhede, Michael 2005 2005-07-26 PMC N PMC7161638 16041067.0 10.1107/s0907444905013090 gts5bexh 0.619372 UNKNOWN_1987, Callison_1999, Ivarsson_2012, Staple_2005, Volmer_2010
93 Lamb_2011 Charge-Surrounded Pockets and Electrostatic Interactions with Small Ions Modulate the Activity of Retroviral Fusion Proteins Lamb, Daniel; Schüttelkopf, Alexander W.; van Aalten, Daan M. F.; Brighty, David W. 2011 2011-02-03 COMM-USE N PMC3033372 21304939.0 10.1371/journal.ppat.1001268 wk2u2a9w 0.617324 UNKNOWN_1987, Ivarsson_2012, Chang_2000, Gomis-Rüth_2003, Yang_2012 Voß_D_2009
94 Ling_2016 Combined approaches of EPR and NMR illustrate only one transmembrane helix in the human IFITM3 Ling, Shenglong; Zhang, Chengwei; Wang, Wei; Cai, Xiaoying; Yu, Lu; Wu, Fangming; Zhang, Longhua; Tian, Changlin 2016 2016-04-05 COMM-USE N PMC4820770 27046158.0 10.1038/srep24029 gvzp2h5g 0.616395 UNKNOWN_1993, UNKNOWN_1993, UNKNOWN_1987, Ivarsson_2012, Gomis-Rüth_2003 Voß_D_2009, Weston_2014
95 Ge_M_2011 Two Conserved Residues Are Important for Inducing Highly Ordered Membrane Domains by the Transmembrane Domain of Influenza Hemagglutinin Ge, Mingtao; Freed, Jack H. 2011 2011-01-05 None N PMC3010018 21190660.0 10.1016/j.bpj.2010.11.014 1gykjlm4 0.613749 UNKNOWN_1993, Ivarsson_2012, UNKNOWN_1993, Cosson_2013 Chang_2008, Voß_D_2009, D’Errico_2009
96 Corver_2009 Mutagenesis of the transmembrane domain of the SARS coronavirus spike glycoprotein: refinement of the requirements for SARS coronavirus cell entry Corver, Jeroen; Broer, Rene; van Kasteren, Puck; Spaan, Willy 2009 2009-12-24 COMM-USE N PMC2805634 20034394.0 10.1186/1743-422x-6-230 4gk5o1b8 0.613230 UNKNOWN_1987, Chang_2000, UNKNOWN_1993, Ivarsson_2012, Yang_2012 Guillén_2009, Voß_D_2009, Du_L_2007, Guillén_2008
97 Liu_C_2006 Characterization of HCoV-229E fusion core: Implications for structure basis of coronavirus membrane fusion Liu, Cheng; Feng, Youjun; Gao, Feng; Zhang, Qiangmin; Wang, Ming 2006 2006-07-07 PMC N PMC7092883 16714001.0 10.1016/j.bbrc.2006.04.141 9bhqyogh 0.612219 Volmer_2010, Pong_2011, UNKNOWN_1987, Shen_2005, Kang_2009 Xia_S_2018, O'Connor_1999, Yan_L_2018, Kanjanahaluethai_2007
98 Yang_2012 Replication of murine coronavirus requires multiple cysteines in the endodomain of spike protein Yang, Jinhua; Lv, Jun; Wang, Yuyan; Gao, Shuang; Yao, Qianqian; Qu, Di; Ye, Rong 2012 2012-06-05 PMC N PMC7111998 22424735.0 10.1016/j.virol.2012.02.015 yylu7jpf 0.609547 UNKNOWN_1987, Chang_2000, Volmer_2010, UNKNOWN_1993 Chang_2000, Voß_D_2009, UNKNOWN_1987
99 Jankauskaitė_2018 SKEMPI 2.0: An updated benchmark of changes in protein-protein binding energy, kinetics and thermodynamics upon mutation Justina Jankauskaitė; Brian Jiménez-García; Justas Dapkūnas; Juan Fernández-Recio; Iain H. Moal 2018 2018-06-07 BioRxiv N 10.1101/341735 d0eynz67 0.609167 Ivarsson_2012, Smith_2003, Chan_2016, Kinjo_2012 Jankauskaitė_2019, Myllykoski_2017, Scrima_2004
100 Azoitei_2012 Computational Design of High-Affinity Epitope Scaffolds by Backbone Grafting of a Linear Epitope Azoitei, Mihai L.; Ban, Yih-En Andrew; Julien, Jean-Philippe; Bryson, Steve; Schroeter, Alexandria; Kalyuzhniy, Oleksandr; Porter, Justin R.; Adachi, Yumiko; Baker, David; Pai, Emil F.; Schief, William R. 2012 2012-01-06 PMC N PMC7105911 22061265.0 10.1016/j.jmb.2011.10.003 eti90wxk 0.608906 Ivarsson_2012, Wang_2014, Kinjo_2012, Naito_2007 Azoitei_2014, Irving_2010, Robinson_2013
101 Stehle_2003 Structural evidence for common functions and ancestry of the reovirus and adenovirus attachment proteins Stehle, Thilo; Dermody, Terence S. 2003 2003-02-28 PMC N PMC7169122 12627395.0 10.1002/rmv.379 zgoi2lkv 0.608075 den_Boon_2010, Rice_1992, Volmer_2010, Gorbalenya_1988, Ivarsson_2012
102 Johnson_2010 SARS Coronavirus Unique Domain: Three-Domain Molecular Architecture in Solution and RNA Binding Johnson, Margaret A.; Chatterjee, Amarnath; Neuman, Benjamin W.; Wüthrich, Kurt 2010 2010-07-23 None N PMC2958096 20493876.0 10.1016/j.jmb.2010.05.027 5ms5e3rp 0.606534 Ivarsson_2012, UNKNOWN_1987, Gorbalenya_1988, Smith_2003, Yang_2012 Voß_D_2009, Tsai_2010, Guillén_2009
103 Song_2018 Cryo-EM structure of the SARS coronavirus spike glycoprotein in complex with its host cell receptor ACE2 Song, Wenfei; Gui, Miao; Wang, Xinquan; Xiang, Ye 2018 2018-08-13 COMM-USE N PMC6107290 30102747.0 10.1371/journal.ppat.1007236 g28eq99t 0.606410 Gomis-Rüth_2003, Pong_2011, UNKNOWN_1987, Li_F_2016, Narayanan_2003 Du_L_2007, Voß_D_2009, Guillén_2009
104 Uversky_2013 Under‐folded proteins: Conformational ensembles and their roles in protein folding, function, and pathogenesis Uversky, Vladimir N. 2013 2013-08-28 PMC N PMC7161862 23754493.0 10.1002/bip.22298 licb2qhi 0.606184 Ivarsson_2012, Staple_2005, Cosson_2013, Dubois_2016, UNKNOWN_1987
105 Shang_2018 Cryo-EM structure of infectious bronchitis coronavirus spike protein reveals structural and functional evolution of coronavirus spike proteins Shang, Jian; Zheng, Yuan; Yang, Yang; Liu, Chang; Geng, Qibin; Luo, Chuming; Zhang, Wei; Li, Fang 2018 2018-04-23 COMM-USE N PMC5933801 29684066.0 10.1371/journal.ppat.1007009 s0wmll4q 0.605948 Volmer_2010, Callison_1999, Li_F_2016, den_Boon_2010, Ivarsson_2012 Walls_2016, Voß_D_2009, Kanjanahaluethai_2007, Shajahan_2020
106 He_R_2004 Characterization of protein–protein interactions between the nucleocapsid protein and membrane protein of the SARS coronavirus He, Runtao; Leeson, Andrew; Ballantine, Melissa; Andonov, Anton; Baker, Lindsay; Dobie, Frederick; Li, Yan; Bastien, Nathalie; Feldmann, Heinz; Strocher, Ute; Theriault, Steven; Cutts, Todd; Cao, Jingxin; Booth, Timothy F.; Plummer, Frank A.; Tyler, Shaun; Li, Xuguang 2004 2004-10-31 PMC N PMC7127797 15351485.0 10.1016/j.virusres.2004.05.002 76ia62hl 0.605468 Volmer_2010, Gorbalenya_1988, Kang_2009, Pong_2011, Luytjes_1988 Zhang_2015, Voß_D_2009, Wang_2009, Li_S_2016
107 Kinjo_2012 Composite Structural Motifs of Binding Sites for Delineating Biological Functions of Proteins Kinjo, Akira R.; Nakamura, Haruki 2012 2012-02-08 COMM-USE N PMC3275580 22347478.0 10.1371/journal.pone.0031437 hsh2yynq 0.605256 Ivarsson_2012, Staple_2005, Qi_Z_2018, Liu_Z_2008 Myllykoski_2017, Otsuka_1999
108 Mahajan_2018 NMR structure and localization of a large fragment of the SARS-CoV fusion protein: Implications in viral cell fusion Mahajan, Mukesh; Chatterjee, Deepak; Bhuvaneswari, Kannaian; Pillay, Shubhadra; Bhattacharjya, Surajit 2018 2018-02-28 None N PMC7094225 28988778.0 10.1016/j.bbamem.2017.10.002 eiv5ndd4 0.604961 Gomis-Rüth_2003, UNKNOWN_1987, Wang_2014, Ivarsson_2012, UNKNOWN_1993 Mahajan_2015, Voß_D_2009, Guillén_2009, Chen_2009
109 Ryu_M_2011 LILRA3 Binds Both Classical and Non-Classical HLA Class I Molecules but with Reduced Affinities Compared to LILRB1/LILRB2: Structural Evidence Ryu, Myongchol; Chen, Yong; Qi, Jianxun; Liu, Jun; Fan, Zheng; Nam, Gol; Shi, Yi; Cheng, Hao; Gao, George F. 2011 2011-04-29 COMM-USE N PMC3084784 21559424.0 10.1371/journal.pone.0019245 vl3stglz 0.602698 Ivarsson_2012, Smith_2003, UNKNOWN_1987, Snyder_2005 Santiago_2007, Bos_M_1999, Xu_S_2020
110 Nguyen_2019 Structure and oligomerization state of the C‐terminal region of the Middle East respiratory syndrome coronavirus nucleoprotein Nguyen, Thi Hong Van; Lichière, Julie; Canard, Bruno; Papageorgiou, Nicolas; Attoumani, Sarah; Ferron, François; Coutard, Bruno 2019 2019-01-15 PMC N PMC7159728 30644840.0 10.1107/s2059798318014948 66um92p7 0.600915 Volmer_2010, Ivarsson_2012, UNKNOWN_1987, Gorbalenya_1988, Auewarakul_2005
111 Chakraborti_2005 The SARS Coronavirus S Glycoprotein Receptor Binding Domain: Fine Mapping and Functional Characterization Chakraborti, Samitabh; Prabakaran, Ponraj; Xiao, Xiaodong; Dimitrov, Dimiter S 2005 2005-08-25 COMM-USE N PMC1236967 16122388.0 10.1186/1743-422x-2-73 ofx0hvvs 0.598457 UNKNOWN_1987, Yang_2012, Wu_G_2005, Smith_2003, Chang_2000 Voß_D_2009, Guillén_2009
112 Luo_C_2004 Nucleocapsid protein of SARS coronavirus tightly binds to human cyclophilin A Luo, Cheng; Luo, Haibin; Zheng, Suxin; Gui, Chunshan; Yue, Liduo; Yu, Changying; Sun, Tao; He, Peilan; Chen, Jing; Shen, Jianhua; Luo, Xiaomin; Li, Yixue; Liu, Hong; Bai, Donglu; Shen, Jingkang; Yang, Yiming; Li, Fangqiu; Zuo, Jianping; Hilgenfeld, Rolf; Pei, Gang; Chen, Kaixian; Shen, Xu; Jiang, Hualiang 2004 2004-08-27 PMC N PMC7092810 15358143.0 10.1016/j.bbrc.2004.07.003 st8k0yym 0.597680 Volmer_2010, Ivarsson_2012, Chan_2016, Kang_2009, Pong_2011 Zhang_2015, Li_S_2016, Du_L_2007, Ren_A_2004
113 Peng_2013 A creature with a hundred waggly tails: intrinsically disordered proteins in the ribosome Peng, Zhenling; Oldfield, Christopher J.; Xue, Bin; Mizianty, Marcin J.; Dunker, A. Keith; Kurgan, Lukasz; Uversky, Vladimir N. 2013 2013-08-13 None N PMC7079807 23942625.0 10.1007/s00018-013-1446-6 8a3o5lmo 0.597680 Ivarsson_2012, Staple_2005, Dubois_2016, Choudhury_2017, Volmer_2010 Uversky_2013, Järvelin_2016, Basu_2016
114 Chen_2010 Construction of an implicit membrane environment for the lattice Monte Carlo simulation of transmembrane protein Chen, Yantao; Wang, Mingliang; Zhang, Qianling; Liu, Jianhong 2010 2010-03-31 PMC N PMC7117040 20079964.0 10.1016/j.bpc.2009.12.008 lf9heo1b 0.597594 UNKNOWN_1987, Ivarsson_2012, Wang_2014, UNKNOWN_1993, Modis_2013 Chang_2008, UNKNOWN_1989, Faaberg_1996, RAMAKRISHNA_2015
115 Deng_2006 Structures and Polymorphic Interactions of Two Heptad-Repeat Regions of the SARS Virus S2 Protein Deng, Yiqun; Liu, Jie; Zheng, Qi; Yong, Wei; Lu, Min 2006 2006-05-31 PMC N PMC7127249 16698550.0 10.1016/j.str.2006.03.007 814l8cq0 0.596742 Gomis-Rüth_2003, UNKNOWN_1987, Modis_2013, Pong_2011, Ivarsson_2012 Guillén_2009, Guillén_2008
116 Liu_Y_2006 Structural characterization of Mumps virus fusion protein core Liu, Yueyong; Xu, Yanhui; Lou, Zhiyong; Zhu, Jieqing; Hu, Xuebo; Gao, George F.; Qiu, Bingsheng; Rao, Zihe; Tien, Po 2006 2006-09-29 PMC N PMC7092830 16904649.0 10.1016/j.bbrc.2006.07.168 gm5kn9xs 0.592983 Gomis-Rüth_2003, UNKNOWN_1987, Pong_2011, Chang_2000 Peisajovich_2000
117 Yu_J_2020 Cryo-EM structures of HKU2 and SADS-CoV spike glycoproteins and insights into coronavirus evolution Jinfang Yu; Shuyuan Qiao; Runyu Guo; Xinquan Wang 2020 2020-02-24 BioRxiv N 10.1101/2020.02.23.961912 25va2cvt 0.590813 Volmer_2010, Callison_1999, UNKNOWN_1987, Gorbalenya_1988, Ivarsson_2012 Guan_2020, Shang_2018, Niemeyer_2018, Ng_O_2014
118 Wang_2013 Structure of MERS-CoV spike receptor-binding domain complexed with human receptor DPP4 Wang, Nianshuang; Shi, Xuanling; Jiang, Liwei; Zhang, Senyan; Wang, Dongli; Tong, Pei; Guo, Dongxing; Fu, Lili; Cui, Ye; Liu, Xi; Arledge, Kelly C; Chen, Ying-Hua; Zhang, Linqi; Wang, Xinquan 2013 2013-07-09 NONCOMM N PMC3731569 23835475.0 10.1038/cr.2013.92 gwq4vev6 0.588882 Ivarsson_2012, Smith_2003, Pong_2011, Hao_W_2017 Zhang_2018, Elshabrawy_2012, Guillén_2009
119 Kirchdoerfer_2016 Prefusion structure of a human coronavirus spike protein Kirchdoerfer, Robert N.; Cottrell, Christopher A.; Wang, Nianshuang; Pallesen, Jesper; Yassine, Hadi M.; Turner, Hannah L.; Corbett, Kizzmekia S.; Graham, Barney S.; McLellan, Jason S.; Ward, Andrew B. 2016 2016-03-01 PMC N PMC4860016 26935699.0 10.1038/nature17200 3gpjsiak 0.588801 Volmer_2010, Ivarsson_2012, Gomis-Rüth_2003, UNKNOWN_1987, Pong_2011 Voß_D_2009
120 Effantin_2016 Cryo-electron Microscopy Structure of the Native Prototype Foamy Virus Glycoprotein and Virus Architecture Effantin, Grégory; Estrozi, Leandro F.; Aschman, Nick; Renesto, Patricia; Stanke, Nicole; Lindemann, Dirk; Schoehn, Guy; Weissenhorn, Winfried 2016 2016-07-11 COMM-USE N PMC4939959 27399201.0 10.1371/journal.ppat.1005721 anp238gu 0.588647 Gomis-Rüth_2003, UNKNOWN_1987, Volmer_2010, UNKNOWN_1993, Diaz_2011 Walls_2016
121 Zhou_2019 Crystallization and Structural Determination of the Receptor-Binding Domain of MERS-CoV Spike Glycoprotein Zhou, Haixia; Zhang, Shuyuan; Wang, Xinquan 2019 2019-09-14 PMC N PMC7123399 31883086.0 10.1007/978-1-0716-0211-9_4 9piio754 0.588629 Ivarsson_2012, Pong_2011, Okda_2017, Dey_A_2009 Zhang_2018, Voß_D_2009
122 Zhang_2005 A molecular docking model of SARS-CoV S1 protein in complex with its receptor, human ACE2 Zhang, Yuan; Zheng, Nan; Hao, Pei; Cao, Ying; Zhong, Yang 2005 2005-06-30 PMC N PMC7106554 15979045.0 10.1016/j.compbiolchem.2005.04.008 7rqt8uyk 0.588422 Callison_1999, Ivarsson_2012, Volmer_2010, UNKNOWN_1987, Yang_2012 Zhang_2009, Guillén_2009, Wang_2013, Hu_T_2009
123 Ramírez-Sarmiento_2015 The Folding Unit of Phosphofructokinase-2 as Defined by the Biophysical Properties of a Monomeric Mutant Ramírez-Sarmiento, César A.; Baez, Mauricio; Zamora, Ricardo A.; Balasubramaniam, Deepa; Babul, Jorge; Komives, Elizabeth A.; Guixé, Victoria 2015 2015-05-01 PMC N PMC4423062 25954892.0 10.1016/j.bpj.2015.04.001 y9ww3o1e 0.587374 Ivarsson_2012, Smith_2003, Guo_Y_2013, Chan_2016, Gomis-Rüth_2003 Myllykoski_2017, Buller_2012
124 Jonić_2016 Cryo-electron Microscopy Analysis of Structurally Heterogeneous Macromolecular Complexes Jonić, Slavica 2016 2016-10-14 COMM-USE N PMC5072154 27800126.0 10.1016/j.csbj.2016.10.002 toglzyci 0.587090 DiMaio_2016, Montgomery_2004, Subramaniam_2016, Dawson_2007 Neuman_2007, Chichón_2012, Sachse_2019
125 Ivarsson_2012 Plasticity of PDZ domains in ligand recognition and signaling Ivarsson, Ylva 2012 2012-08-14 None N PMC7094393 22576124.0 10.1016/j.febslet.2012.04.015 ov1f1uyt 0.585796 Smith_2003, Cosson_2013, Choudhury_2017, Sato_2019 Myllykoski_2017, Sato_2019, Tong_2009
126 Santiago_2007 Structures of T Cell Immunoglobulin Mucin Receptors 1 and 2 Reveal Mechanisms for Regulation of Immune Responses by the TIM Receptor Family Santiago, César; Ballesteros, Angela; Tami, Cecilia; Martínez-Muñoz, Laura; Kaplan, Gerardo G.; Casasnovas, José M. 2007 2007-03-23 None N PMC7111020 17363299.0 10.1016/j.immuni.2007.01.014 vjes2h5p 0.585629 Ivarsson_2012, Smith_2003, Cosson_2013, Greene_2012, Cambi_2005 Bos_M_1999
127 Conners_2008 The Moraxella adhesin UspA1 binds to its human CEACAM1 receptor by a deformable trimeric coiled-coil Conners, Rebecca; Hill, Darryl J; Borodina, Elena; Agnew, Christopher; Daniell, Sarah J; Burton, Nicholas M; Sessions, Richard B; Clarke, Anthony R; Catto, Lucy E; Lammie, Donna; Wess, Timothy; Brady, R Leo; Virji, Mumtaz 2008 2008-06-18 None N PMC2396876 18497748.0 10.1038/emboj.2008.101 7vvj0vfs 0.583268 Ivarsson_2012, UNKNOWN_1987, Smith_2003, Volmer_2010, Gomis-Rüth_2003 Korotkova_2007, Voges_2010, Bos_M_1999
128 Jankauskaitė_2019 SKEMPI 2.0: an updated benchmark of changes in protein–protein binding energy, kinetics and thermodynamics upon mutation Jankauskaitė, Justina; Jiménez-García, Brian; Dapkūnas, Justas; Fernández-Recio, Juan; Moal, Iain H 2019 2019-02-01 COMM-USE N PMC6361233 30020414.0 10.1093/bioinformatics/bty635 vqiipbo8 0.582285 Ivarsson_2012, Wang_2006, Fricke_2019, Callison_1999 Jankauskaitė_2018, Myllykoski_2017, Scrima_2004
129 Shen_2013 Removal of a C-terminal serine residue proximal to the inter-chain disulfide bond of a human IgG1 lambda light chain mediates enhanced antibody stability and antibody dependent cell-mediated cytotoxicity Shen, Yang; Zeng, Lin; Zhu, Aiping; Blanc, Tim; Patel, Dipa; Pennello, Anthony; Bari, Amtul; Ng, Stanley; Persaud, Kris; Kang, Yun (Kenneth); Balderes, Paul; Surguladze, David; Hindi, Sagit; Zhou, Qinwei; Ludwig, Dale L.; Snavely, Marshall 2013 2013-05-01 NONCOMM N PMC4169035 23567210.0 10.4161/mabs.24291 mvr41z73 0.580333 Ivarsson_2012, Smith_2003, UNKNOWN_1987, Yang_2012, Chang_2000 Zhang_2011, Yin_J_2005, Moulaei_2010
130 Prabakaran_2004 A model of the ACE2 structure and function as a SARS-CoV receptor Prabakaran, Ponraj; Xiao, Xiaodong; Dimitrov, Dimiter S 2004 2004-01-30 PMC N PMC7117316 14715271.0 10.1016/j.bbrc.2003.12.081 yvbsvalz 0.579971 UNKNOWN_1987, Ivarsson_2012, Luytjes_1988, Callison_1999, Smith_2003 Lai_Z_2009, Zhang_2009, Wei_P_2006, Guillén_2009
131 Wu_J_2016 Biochemical and structural characterization of the interface mediating interaction between the influenza A virus non-structural protein-1 and a monoclonal antibody Wu, Jianping; Mok, Chee-Keng; Chow, Vincent Tak Kwong; Yuan, Y. Adam; Tan, Yee-Joo 2016 2016-09-16 COMM-USE N PMC5025888 27633136.0 10.1038/srep33382 486sk4wc 0.578721 Volmer_2010, Hu_W_2013, Pong_2011, Yasui_2016 Popescu_2011, Hu_X_2016, Someya_2008
132 Yunus_2010 Elevated Temperature Triggers Human Respiratory Syncytial Virus F Protein Six-Helix Bundle Formation Yunus, Abdul S.; Jackson, Trent P.; Crisafi, Katherine; Burimski, Irina; Kilgore, Nicole R.; Zoumplis, Dorian; Allaway, Graham P.; Wild, Carl T.; Salzwedel, Karl 2010 2010-01-01 PMC N PMC2789909 19922971.0 10.1016/j.virol.2009.10.040 6aph6kh6 0.577822 Gomis-Rüth_2003, Volmer_2010, Pong_2011, UNKNOWN_1987, Ban_J_2018 Sedeyn_2019, Gilman_2019
133 Røder_2008 Structure of a SARS coronavirus-derived peptide bound to the human major histocompatibility complex class I molecule HLA-B*1501 Røder, Gustav; Kristensen, Ole; Kastrup, Jette S.; Buus, Søren; Gajhede, Michael 2008 2008-05-17 PMC N PMC2496847 18540051.0 10.1107/s1744309108012396 v0vznri2 0.577562 Ivarsson_2012, UNKNOWN_1987, Hausmann_1997, UNKNOWN_1986, Volmer_2010 Wang_2012, Lv_Y_2009
134 Liu_H_2013 Homology Models and Molecular Dynamics Simulations of Main Proteinase from Coronavirus Associated with Severe Acute Respiratory Syndrome (SARS) Liu, Hsuan‐Liang; Lin, Jin‐Chung; Ho, Yih; Hsieh, Wei‐Chan; Chen, Chin‐Wen; Su, Yuan‐Chen 2013 2013-09-25 PMC Y PMC7167048 10.1002/jccs.200400134 zjvk1p1s 0.576609 Staple_2005, Callison_1999, Ivarsson_2012, Gorbalenya_1988, UNKNOWN_1987
135 Chang_2005 Modular organization of SARS coronavirus nucleocapsid protein Chang, Chung-ke; Sue, Shih-Che; Yu, Tsan-hung; Hsieh, Chiu-Min; Tsai, Cheng-Kun; Chiang, Yen-Chieh; Lee, Shin-jye; Hsiao, Hsin-hao; Wu, Wen-Jin; Chang, Wei-Lun; Lin, Chun-Hung; Huang, Tai-huang 2005 2005-10-14 PMC N PMC7089556 16228284.0 10.1007/s11373-005-9035-9 1ujmjjwb 0.576526 Ivarsson_2012, Pong_2011, Gorbalenya_1988, Hao_W_2017 Zhang_2015, Li_S_2016, Voß_D_2009
136 Eddy_2018 Rotation-Activated and Cooperative Zipping Characterize Class I Viral Fusion Protein Dynamics Eddy, Nathanial R.; Onuchic, José N. 2018 2018-04-01 PMC N PMC5937144 29694865.0 10.1016/j.bpj.2018.03.005 38pb1bti 0.575277 Ivarsson_2012, Cosson_2013, Li_F_2016, Ruiz-Herrero_2015 Stiasny_2007
137 Aouacheria_2015 Redefining the BH3 Death Domain as a ‘Short Linear Motif’ Aouacheria, Abdel; Combet, Christophe; Tompa, Peter; Hardwick, J. Marie 2015 2015-12-31 None N PMC5056427 26541461.0 10.1016/j.tibs.2015.09.007 gyon6hsj 0.574097 Ivarsson_2012, Choudhury_2017, Aouacheria_2013, Taschuk_2020 Zhang_2015, Yu_L_2017, Sun_D_2016
138 Hatakeyama_2008 Dissection and identification of regions required to form pseudoparticles by the interaction between the nucleocapsid (N) and membrane (M) proteins of SARS coronavirus Hatakeyama, Seisuke; Matsuoka, Yusuke; Ueshiba, Hidehiro; Komatsu, Nobukazu; Itoh, Kyogo; Shichijo, Shigeki; Kanai, Takao; Fukushi, Masaya; Ishida, Isao; Kirikae, Teruo; Sasazuki, Takehiko; Miyoshi-Akiyama, Tohru 2008 2008-10-10 PMC N PMC7103410 18703211.0 10.1016/j.virol.2008.07.012 qbz4furm 0.574097 Volmer_2010, UNKNOWN_1987, Yang_2012, Shen_2005, Narayanan_2003 Timani_2005, Voß_D_2009
139 Liu_D_2017 Topology Engineering of Proteins in Vivo Using Genetically Encoded, Mechanically Interlocking SpyX Modules for Enhanced Stability Liu, Dong; Wu, Wen-Hao; Liu, Ya-Jie; Wu, Xia-Ling; Cao, Yang; Song, Bo; Li, Xiaopeng; Zhang, Wen-Bin 2017 2017-05-10 None N PMC5445526 28573210.0 10.1021/acscentsci.7b00104 xonthuw5 0.572693 Ivarsson_2012, UNKNOWN_1987, Wang_2014, Smith_2003, Gomis-Rüth_2003 Kuo_D_2011, Strong_1991, Singleton_2018
140 Sivanesam_2019 Pre-structured hydrophobic peptide β-strands: A universal amyloid trap? Sivanesam, Kalkena; Andersen, Niels 2019 2019-03-30 PMC N PMC7094768 30707943.0 10.1016/j.abb.2019.01.032 c6hqrnj2 0.572105 Ivarsson_2012, Volmer_2010, Zúñiga_2009, Kirillova_2009 Abad_2009, Robinson_2013, Ghosh_2015, Endres_2020
141 Saphire_2007 STRUCTURE OF A HIGH-AFFINITY “MIMOTOPE” PEPTIDE BOUND TO HIV-1-NEUTRALIZING ANTIBODY b12 EXPLAINS ITS INABILITY TO ELICIT gp120 CROSS-REACTIVE ANTIBODIES Saphire, Erica Ollmann; Montero, Marinieve; Menendez, Alfredo; van Houten, Nienke E.; Irving, Melita B.; Pantophlet, Ralph; Zwick, Michael B.; Parren, Paul W. H. I.; Burton, Dennis R.; Scott, Jamie K.; Wilson, Ian A. 2007 2007-06-01 PMC N PMC1995417 17445828.0 10.1016/j.jmb.2007.01.060 5dpf3eh6 0.571064 Dey_A_2009, Okda_2017, Zhou_2007, Irving_2010
142 Walls_2016 Cryo-electron microscopy structure of a coronavirus spike glycoprotein trimer Walls, Alexandra C.; Tortorici, M.Alejandra; Bosch, Berend-Jan; Frenz, Brandon; Rottier, Peter J.M.; DiMaio, Frank; Rey, Félix A.; Veesler, David 2016 2016-02-08 PMC N PMC5018210 26855426.0 10.1038/nature16988 wn9ggdes 0.570801 Volmer_2010, Gomis-Rüth_2003, Pong_2011, UNKNOWN_1987, Rice_1992 Walls_2016, Effantin_2016
143 Yan_R_2020 Structure of dimeric full-length human ACE2 in complex with B0AT1 Renhong Yan; Yuanyuan Zhang; Yaning Li; Lu Xia; Qiang Zhou 2020 2020-02-18 BioRxiv Y 10.1101/2020.02.17.951848 sty7myg4 0.570757 UNKNOWN_1987, Gomis-Rüth_2003, Volmer_2010, Ivarsson_2012, Ban_J_2018 Wei_P_2006, Cheng_2010, Zhang_2009
144 Pérez‐Berná_2007 Hepatitis C virus core protein binding to lipid membranes: the role of domains 1 and 2 Pérez‐Berná, A. J.; Veiga, A. S.; Castanho, M. A. R. B.; Villalaín, J. 2007 2007-12-21 PMC N PMC7166730 18179451.0 10.1111/j.1365-2893.2007.00948.x 5pyg4vzx 0.570706 Volmer_2010, Naito_2007, Trobaugh_2017, Kang_2009, UNKNOWN_1987
145 Liu_I_2009 Identification of a minimal peptide derived from heptad repeat (HR) 2 of spike protein of SARS-CoV and combination of HR1-derived peptides as fusion inhibitors Liu, I-Jung; Kao, Chuan-Liang; Hsieh, Szu-Chia; Wey, Ming-Tsair; Kan, Lon-Sing; Wang, Wei-Kung 2009 2009-01-31 PMC N PMC7114320 18983873.0 10.1016/j.antiviral.2008.10.001 2em43ypc 0.570648 UNKNOWN_1987, Pong_2011, Chang_2000, Volmer_2010, Naito_2007 Yuan_2004, Ni_L_2005, Yan_Z_2006, Liu_S_2004
146 Ibrahim_2020 COVID-19 spike-host cell receptor GRP78 binding site prediction Ibrahim, Ibrahim M.; Abdelmalek, Doaa H.; Elshahat, Mohammed E.; Elfiky, Abdo A. 2020 2020-05-31 PMC Y 32169481.0 10.1016/j.jinf.2020.02.026 j10308i3 0.569813 Ivarsson_2012, Volmer_2010, UNKNOWN_1987, Smith_2003, Chan_2016 Shajahan_2020, Guillén_2009, Zhang_2015
147 Xiao_2004 Oligomerization of the SARS-CoV S glycoprotein: dimerization of the N-terminus and trimerization of the ectodomain Xiao, Xiaodong; Feng, Yang; Chakraborti, Samitabh; Dimitrov, Dimiter S. 2004 2004-09-10 PMC N PMC7092807 15313178.0 10.1016/j.bbrc.2004.07.084 wow01j26 0.569551 UNKNOWN_1987, Chang_2000, Smith_2003, Gomis-Rüth_2003, Ivarsson_2012 Voß_D_2009, Chen_2009, Guillén_2009
148 McFarlane_2009 The use of coiled-coil proteins in drug delivery systems McFarlane, Ainsley A.; Orriss, George L.; Stetefeld, Jörg 2009 2009-12-25 PMC N PMC7094320 19835864.0 10.1016/j.ejphar.2009.05.034 vvs512q6 0.569121 Ivarsson_2012, UNKNOWN_1987, Smith_2003, Chang_2000, Volmer_2010 Doll_2015
149 Surya_2018 Structural model of the SARS coronavirus E channel in LMPG micelles Surya, Wahyu; Li, Yan; Torres, Jaume 2018 2018-06-30 None N PMC7094280 29474890.0 10.1016/j.bbamem.2018.02.017 rnaktik9 0.569041 Volmer_2010, UNKNOWN_1987, Callison_1999, Gomis-Rüth_2003, Yang_2012 Guillén_2009, Niemeyer_2018, Voß_D_2009, Surya_2015
150 Yamamoto_2005 L565M mutation in HIV-1 glycoprotein 41 stabilizes the coiled-coil structure Yamamoto, Daisuke; Li, Gui-Mei; Ikuta, Kazuyoshi; Goto, Toshiyuki 2005 2005-09-16 PMC N PMC7092850 16054592.0 10.1016/j.bbrc.2005.07.052 x0q49xld 0.568248 UNKNOWN_1987, Volmer_2010, Ivarsson_2012, Chang_2000, Smith_2003 Zhu_X_2015, Guillén_2009, Wang_2013
151 Harrison_2011 Designed protein mimics of the Ebola virus glycoprotein GP2 α-helical bundle: Stability and pH effects Harrison, Joseph S; Higgins, Chelsea D; Chandran, Kartik; Lai, Jonathan R 2011 2011-08-03 PMC N PMC3190153 21739501.0 10.1002/pro.688 fgygmzpb 0.567248 Gomis-Rüth_2003, Pong_2011, Diaz_2011, Modis_2013, UNKNOWN_1987 Koellhoffer_2012, Kanjanahaluethai_2007
152 Hussain_2020 Structural Basis of SARS-CoV-2 Spike Protein Priming by TMPRSS2 Mushtaq Hussain; Nusrat Jabeen; Anusha Amanullah; Ayesha Ashraf Baig; Basma Aziz; Sanya Shabbir; Fozia Raza 2020 2020-04-22 BioRxiv Y 10.1101/2020.04.21.052639 34ljq0qt 0.566910 Ivarsson_2012, UNKNOWN_1987, Volmer_2010, Morikawa_1992, Chang_2000
153 Sigrist_2020 A potential role for integrins in host cell entry by SARS-CoV-2 Sigrist, Christian; Bridge, Alan; Le Mercier, Philippe 2020 2020-01-01 None Y PMC7114098 32130973.0 10.1016/j.antiviral.2020.104759 2hgwa6pq 0.566857 Ivarsson_2012, Smith_2003, UNKNOWN_1987, Choudhury_2017, Chang_2000 Du_L_2007, Zhang_2009, Joyce_2020, Reguera_2014
154 Smith_2003 Autoinhibition of Bcr-Abl through Its SH3 Domain Smith, Kristen M.; Yacobi, Rinat; Van Etten, Richard A. 2003 2003-07-31 PMC N PMC7128750 12887890.0 10.1016/s1097-2765(03)00274-0 8ksnihp6 0.566037 Ivarsson_2012, Sato_2019, Kumar_2016, Siu_Y_2008 UNKNOWN_1994, Sato_2019
155 dos_Santos_2016 Oligomerization domains in the glycan‐binding receptors DC‐SIGN and DC‐SIGNR: Sequence variation and stability differences dos Santos, Ália; Hadjivasiliou, Andreas; Ossa, Felipe; Lim, Novandy K.; Turgut, Aylin; Taylor, Maureen E.; Drickamer, Kurt 2016 2016-12-22 COMM-USE N PMC5275740 27859859.0 10.1002/pro.3083 goil7gjr 0.563412 Ivarsson_2012, UNKNOWN_1987, UNKNOWN_1993, Smith_2003, Yang_2012 Gramberg_2008, Snyder_2005, Yu_Q_2009
156 Popot_1993 Integral membrane protein structure: transmembrane α-helices as autonomous folding domains Current opinion in structural biology 1993, 3: 532–540 Popot, Jean-Luc 1993 1993-08-31 PMC N PMC7126879 10.1016/0959-440x(93)90079-z cx0m54dd 0.562642 Ivarsson_2012, UNKNOWN_1987, Cosson_2013, UNKNOWN_1993, Modis_2013 UNKNOWN_1985, Faaberg_1996, UNKNOWN_1995
157 BOS_E_1995 Mutational Analysis of the Murine Coronavirus Spike Protein: Effect on Cell-to-Cell Fusion BOS, EVELYNE C.W.; HEIJNEN, LEO; LUYTJES, WILLEM; SPAAN, WILLY J.M. 1995 1995-12-20 PMC N PMC7131709 8553547.0 10.1006/viro.1995.0056 ihsqbtxu 0.562604 UNKNOWN_1987, Chang_2000, Volmer_2010, UNKNOWN_1993, Yang_2012 Chang_2000, Piñón_1997, Chen_2009
158 Fan_H_2005 The Nucleocapsid Protein of Coronavirus Infectious Bronchitis Virus: Crystal Structure of Its N-Terminal Domain and Multimerization Properties Fan, Hui; Ooi, Amy; Tan, Yong Wah; Wang, Sifang; Fang, Shouguo; Liu, Ding Xiang; Lescar, Julien 2005 2005-12-31 PMC N PMC7126683 16338414.0 10.1016/j.str.2005.08.021 wz8hp6sc 0.562604 Pong_2011, Narayanan_2003, Gomis-Rüth_2003, Stork_2011, Kang_2009 Zhang_2015, Masters_1992
159 Moreno_2018 Molecular Evidence of Adenosine Deaminase Linking Adenosine A(2A) Receptor and CD26 Proteins Moreno, Estefanía; Canet, Júlia; Gracia, Eduard; Lluís, Carme; Mallol, Josefa; Canela, Enric I.; Cortés, Antoni; Casadó, Vicent 2018 2018-02-15 COMM-USE N PMC5818423 29497379.0 10.3389/fphar.2018.00106 uzpq7cp2 0.562192 Ivarsson_2012, Smith_2003, Greene_2012, Volmer_2010, UNKNOWN_1987 Gabrilovac_2005, Bütepage_2015, Sticher_2020
160 Voß_D_2009 Studies on membrane topology, N-glycosylation and functionality of SARS-CoV membrane protein Voß, Daniel; Pfefferle, Susanne; Drosten, Christian; Stevermann, Lea; Traggiai, Elisabetta; Lanzavecchia, Antonio; Becker, Stephan 2009 2009-06-18 COMM-USE N PMC2705359 19534833.0 10.1186/1743-422x-6-79 jljpb7rv 0.560321 Volmer_2010, UNKNOWN_1987, Chang_2000, Gomis-Rüth_2003, UNKNOWN_1993 Chen_2009, Niemann_1982, Kanjanahaluethai_2007
161 Yuan_2004 Suppression of SARS-CoV entry by peptides corresponding to heptad regions on spike glycoprotein Yuan, Kehu; Yi, Ling; Chen, Jian; Qu, Xiuxia; Qing, Tingting; Rao, Xi; Jiang, Pengfei; Hu, Jianhe; Xiong, Zikai; Nie, Yuchun; Shi, Xuanling; Wang, Wei; Ling, Chen; Yin, Xiaolei; Fan, Keqiang; Lai, Luhua; Ding, Mingxiao; Deng, Hongkui 2004 2004-07-02 PMC N PMC7111000 15184046.0 10.1016/j.bbrc.2004.05.046 gceffbfp 0.558683 Pong_2011, Tallmadge_2008, Naito_2007, Rice_1992, Stork_2011 Veiga_2006, Guillén_2009, Yan_Z_2006, Guillén_2008
162 Yu_Q_2009 Autonomous Tetramerization Domains in the Glycan-binding Receptors DC-SIGN and DC-SIGNR Yu, Quan D.; Oldring, Asa P.; Powlesland, Alex S.; Tso, Cynthia K.W.; Yang, Chunxuan; Drickamer, Kurt; Taylor, Maureen E. 2009 2009-04-17 None N PMC2680971 19249311.0 10.1016/j.jmb.2009.02.046 cazf4k0j 0.557990 Ivarsson_2012, UNKNOWN_1987, Smith_2003, Cosson_2013 Gramberg_2008, Snyder_2005
163 Shaw_1993 Three-dimensional visualization of the rotavirus hemagglutinin structure Shaw, A.L.; Rothnagel, R.; Chen, D.; Ramig, R.F.; Chiu, W.; Prasad, B.V.Venkataram 1993 1993-08-27 PMC N PMC7133302 8395350.0 10.1016/0092-8674(93)90516-s hmn7mg8j 0.557668 Volmer_2010, Gomis-Rüth_2003, Tallmadge_2008, Pong_2011 Effantin_2016
164 Chu_L_2008 Fusion core structure of the severe acute respiratory syndrome coronavirus (SARS‐CoV): In search of potent SARS‐CoV entry inhibitors Chu, Ling‐Hon Matthew; Chan, Siu‐Hong; Tsai, Sau‐Na; Wang, Yi; Cheng, Christopher Hon‐Ki; Wong, Kam‐Bo; Waye, Mary Miu‐Yee; Ngai, Sai‐Ming 2008 2008-04-28 PMC N PMC7166385 18442051.0 10.1002/jcb.21790 7udk7squ 0.557549 UNKNOWN_1987, Chang_2000, Volmer_2010, Gomis-Rüth_2003, UNKNOWN_1993
165 Spiga_2003 Molecular modelling of S1 and S2 subunits of SARS coronavirus spike glycoprotein Spiga, Ottavia; Bernini, Andrea; Ciutti, Arianna; Chiellini, Stefano; Menciassi, Nicola; Finetti, Francesca; Causarono, Vincenza; Anselmi, Francesca; Prischi, Filippo; Niccolai, Neri 2003 2003-10-10 PMC N PMC7110993 14511651.0 10.1016/j.bbrc.2003.08.122 imyfo83x 0.556478 Callison_1999, Volmer_2010, Rice_1992, Gorbalenya_1988, Chang_2011 Guillén_2009, Voß_D_2009, Shajahan_2020
166 Fang_2009 Thermostability of the N-Terminal RNA-Binding Domain of the SARS-CoV Nucleocapsid Protein: Experiments and Numerical Simulations Fang, Huey-Jen; Chen, Yong-Zhong; Li, Mai Suan; Wu, Ming-Chya; Chang, Chun-Ling; Chang, Chung-ke; Hsu, Yen-lan; Huang, Tai-huang; Chen, Hueih-Min; Tsong, Tian-Yow; Hu, Chin-Kun 2009 2009-03-04 None N PMC2717332 19254548.0 10.1016/j.bpj.2008.10.045 opc70nw3 0.556247 Guo_Y_2013, Chan_2016, Ivarsson_2012, Celigoy_2011 Someya_2008, Punekar_2012, Scrima_2004, Guarino_2005
167 Korotkova_2007 Binding of Dr adhesins of Escherichia coli to carcinoembryonic antigen triggers receptor dissociation Korotkova, Natalia; Yang, Yi; Le Trong, Isolde; Cota, Ernesto; Demeler, Borries; Marchant, Jan; Thomas, Wendy E.; Stenkamp, Ronald E.; Moseley, Steve L.; Matthews, Steve 2007 2007-12-11 PMC N PMC2628979 18086185.0 10.1111/j.1365-2958.2007.06054.x 6zp0pbeo 0.555249 Ivarsson_2012, Ye_F_2018, Gorbalenya_1988, Pong_2011 Conners_2008, Moulaei_2010, Bos_M_1999
168 Miyanoiri_2018 Stable-Isotope-Aided NMR Spectroscopy Miyanoiri, Yohei; Takeda, Mitsuhiro; Kainosho, Masatsune 2018 2018-02-09 PMC N PMC7123952 10.1007/978-3-319-28388-3_48 8sv9256h 0.554493 Takeda_2012, Sen_D_2018, Saw_A_2019, Liu_Z_2008, Qi_Z_2018 Kainosho_2017, Longhini_2016, Lee_G_2012, Buller_2012
169 Jaimes_2020 Structural modeling of 2019-novel coronavirus (nCoV) spike protein reveals a proteolytically-sensitive activation loop as a distinguishing feature compared to SARS-CoV and related SARS-like coronaviruses Javier A. Jaimes; Nicole M. André; Jean K. Millet; Gary R. Whittaker 2020 2020-02-18 BioRxiv Y 10.1101/2020.02.10.942185 xa6kwguo 0.553984 Volmer_2010, Callison_1999, UNKNOWN_1987, Luytjes_1988, Jiang_2009 Ng_O_2014, Zheng_2020, Niemeyer_2018, Kumar_2007
170 RAMAKRISHNA_2015 Modeling the structure of SARS 3a transmembrane protein using a minimum unfavorable contact approach RAMAKRISHNA, S; PADHI, SILADITYA; PRIYAKUMAR, U DEVA 2015 2015-12-09 PMC N PMC7090505 10.1007/s12039-015-0982-z gbnns8np 0.553595 Qi_Z_2018, Ivarsson_2012, UNKNOWN_1987, Callison_1999, Polverino_2017 Wang_2013, Voß_D_2009, Guillén_2009
171 Liu_X_2019 Chapter Five Emerging Themes in PDZ Domain Signaling Structure, Function, and Inhibition Liu, Xu; Fuentes, Ernesto J. 2019 2019-12-31 PMC N 30712672.0 10.1016/bs.ircmb.2018.05.013 nfcolowc 0.553122 Ivarsson_2012, Smith_2003, Cosson_2013, Choudhury_2017 Carrara_2017, Sato_2019
172 D’Errico_2009 Interaction of short modified peptides deriving from glycoprotein gp36 of feline immunodeficiency virus with phospholipid membranes D’Errico, Gerardino; Vitiello, Giuseppe; D’Ursi, Anna Maria; Marsh, Derek 2009 2009-05-05 PMC N PMC2728064 19415263.0 10.1007/s00249-009-0454-9 nuioo1nh 0.552097 UNKNOWN_1987, Gomis-Rüth_2003, Volmer_2010, UNKNOWN_1993, Chang_2000 Guillén_2009
173 Shammas_2012 Slow, Reversible, Coupled Folding and Binding of the Spectrin Tetramerization Domain Shammas, S.L.; Rogers, J.M.; Hill, S.A.; Clarke, J. 2012 2012-11-01 PMC N PMC3512043 23200054.0 10.1016/j.bpj.2012.10.012 111bisca 0.551141 Ivarsson_2012, Ruiz-Herrero_2015, Kinjo_2012, Chan_2016 Myllykoski_2017, Moulaei_2010, Ramírez-Sarmiento_2015, Buller_2012
174 Gelhaus_2014 Palmitoylation of the Alphacoronavirus TGEV spike protein S is essential for incorporation into virus-like particles but dispensable for S–M interaction Gelhaus, Sandra; Thaa, Bastian; Eschke, Kathrin; Veit, Michael; Schwegmann-Weßels, Christel 2014 2014-09-30 PMC N PMC7112097 25113909.0 10.1016/j.virol.2014.07.035 a4qqvbwu 0.550929 Volmer_2010, UNKNOWN_1987, Chang_2000, Yang_2012, Kang_2009 Piñón_1997, Someya_2008
175 Bahramali_2016 Chameleon sequences in neurodegenerative diseases Bahramali, Golnaz; Goliaei, Bahram; Minuchehr, Zarrin; Salari, Ali 2016 2016-03-25 None N PMC7124260 26920059.0 10.1016/j.bbrc.2016.01.187 yjn0egy6 0.550531 Callison_1999, Wu_G_2005, UNKNOWN_1987, Krause_1987, Luytjes_1988 Wang_2013, Kumar_2013
176 Zhou_2000 The amino and carboxyl domains of the infectious bronchitis virus nucleocapsid protein interact with 3′ genomic RNA Zhou, Minglong; Collisson, Ellen W 2000 2000-03-31 PMC N PMC7125745 10773316.0 10.1016/s0168-1702(00)00126-x 5q4vt1sl 0.550464 Luytjes_1988, UNKNOWN_1987, Abraham_1990, Tohya_1991 Goldberg_1991, Masters_1992
177 Ma_Y_2010 Structures of the N- and C-terminal domains of MHV-A59 nucleocapsid protein corroborate a conserved RNA-protein binding mechanism in coronavirus Ma, Yanlin; Tong, Xiaohang; Xu, Xiaoling; Li, Xuemei; Lou, Zhiyong; Rao, Zihe 2010 2010-07-01 PMC N PMC4875274 21203940.0 10.1007/s13238-010-0079-x oqusfhei 0.550185 Pong_2011, Volmer_2010, Gorbalenya_1988, Kang_2009, Gomis-Rüth_2003 Chen_2013
178 Ritchie_2015 Probing the structural dynamics of proteins and nucleic acids with optical tweezers Ritchie, Dustin B; Woodside, Michael T 2015 2015-10-31 PMC N PMC7126019 26189090.0 10.1016/j.sbi.2015.06.006 tj3knwxi 0.549185 Ivarsson_2012, Chan_2016, Ruiz-Herrero_2015, Zúñiga_2009 Chan_2016, Myllykoski_2017, Shengjuler_2017, Moulaei_2010
179 Peng_2009 The strong dimerization of the transmembrane domain of the fibroblast growth factor receptor (FGFR) is modulated by C-terminal juxtamembrane residues Peng, Weng Chuan; Lin, Xin; Torres, Jaume 2009 2009-02-01 PMC N PMC2708062 19165726.0 10.1002/pro.65 pxk28u39 0.548985 Smith_2003, Ivarsson_2012, UNKNOWN_1987, Lawson_2012, Ospina_2011 Santiago_2007, Xiao_2004, Lai_Z_2009, Reuven_2014
180 Corse_2003 The cytoplasmic tails of infectious bronchitis virus E and M proteins mediate their interaction Corse, Emily; Machamer, Carolyn E 2003 2003-07-20 PMC N PMC7127533 12890618.0 10.1016/s0042-6822(03)00175-2 6tj2k1yn 0.548502 Volmer_2010, Narayanan_2003, Gomis-Rüth_2003, den_Boon_2010 Wang_2009, Zhang_2015, Popescu_2011
181 Li_Z_2019 The human coronavirus HCoV-229E S-protein structure and receptor binding Li, Zhijie; Tomlinson, Aidan CA; Wong, Alan HM; Zhou, Dongxia; Desforges, Marc; Talbot, Pierre J; Benlekbir, Samir; Rubinstein, John L; Rini, James M 2019 2019-10-25 COMM-USE N PMC6970540 31650956.0 10.7554/elife.51230 a43pgeyk 0.547155 Gomis-Rüth_2003, Ivarsson_2012, Pong_2011, Volmer_2010, UNKNOWN_1987 Voß_D_2009, Du_L_2007
182 Bernini_2004 Prediction of quaternary assembly of SARS coronavirus peplomer Bernini, Andrea; Spiga, Ottavia; Ciutti, Arianna; Chiellini, Stefano; Bracci, Luisa; Yan, Xiyun; Zheng, Bojian; Huang, Jiandong; He, Ming-Liang; Song, Huai-Dong; Hao, Pei; Zhao, Guoping; Niccolai, Neri 2004 2004-12-24 PMC N PMC7092937 15555555.0 10.1016/j.bbrc.2004.10.156 pgiqxd7v 0.546801 Callison_1999, Volmer_2010, UNKNOWN_1987, Li_F_2016 Spiga_2003, Guillén_2009, Bartlam_2005, Bernini_2006
183 Rahaman_2016 Avoiding Regions Symptomatic of Conformational and Functional Flexibility to Identify Antiviral Targets in Current and Future Coronaviruses Rahaman, Jordon; Siltberg-Liberles, Jessica 2016 2016-11-09 NONCOMM N PMC5203785 27797946.0 10.1093/gbe/evw246 pygykil7 0.546402 Staple_2005, Li_D_2019, Naito_2007, Hyde_2015, Volmer_2010 Narayanan_2015, Niemeyer_2018
184 Bielnicki_2005 B. subtilis ykuD Protein at 2.0 Å Resolution: Insights into the Structure and Function of a Novel, Ubiquitous Family of Bacterial Enzymes Bielnicki, Jakub; Devedjiev, Yancho; Derewenda, Urszula; Dauter, Zbigniew; Joachimiak, Andrzej; Derewenda, Zygmunt S. 2005 2005-11-14 PMC N PMC2792008 16287140.0 10.1002/prot.20702 7kkvj4vy 0.545972 Ivarsson_2012, Gorbalenya_1988, UNKNOWN_1987, Hou_L_2014, Smith_2003 Someya_2008, Myllykoski_2017, Punekar_2012
185 Xu_Y_2010 Protein Structure Prediction by Protein Threading Xu, Ying; Liu, Zhijie; Cai, Liming; Xu, Dong 2010 2010-04-29 PMC N PMC7123984 10.1007/978-0-387-68825-1_1 2lia97db 0.545303 Lee_C_2017, Dost_2006, Qi_Z_2018, Saw_A_2019 Myllykoski_2017, Bielnicki_2005
186 Moulaei_2010 Monomerization of Viral Entry Inhibitor Griffithsin Elucidates the Relationship between Multivalent Binding to Carbohydrates and anti-HIV Activity Moulaei, Tinoush; Shenoy, Shilpa R.; Giomarelli, Barbara; Thomas, Cheryl; McMahon, James B.; Dauter, Zbigniew; O'Keefe, Barry R.; Wlodawer, Alexander 2010 2010-09-08 None N PMC3399781 20826337.0 10.1016/j.str.2010.05.016 xslozete 0.545287 Gomis-Rüth_2003, Pong_2011, Ivarsson_2012, Stork_2011, Diaz_2011 Ziółkowska_2006, Lee_C_2019, Cheng_2010
187 Miknis_2010 Crystal Structure of Human Interferon-λ1 in Complex with Its High-Affinity Receptor Interferon-λR1 Miknis, Zachary J.; Magracheva, Eugenia; Li, Wei; Zdanov, Alexander; Kotenko, Sergei V.; Wlodawer, Alexander 2010 2010-12-10 PMC N PMC2991516 20934432.0 10.1016/j.jmb.2010.09.068 7kd2ncb9 0.544407 Ivarsson_2012, Smith_2003, UNKNOWN_1987, Leung_2012 Lee_W_2013, O'Brien_2014, Lasfar_2011
188 Lipp_1986 The membrane-spanning segment of invariant chain (Iγ) contains a potentially cleavable signal sequence Lipp, Joachim; Dobberstein, Bernhard 1986 1986-09-26 PMC N PMC7133317 3530500.0 10.1016/0092-8674(86)90710-5 bli8hwda 0.544122 UNKNOWN_1993, UNKNOWN_1986, UNKNOWN_1987, UNKNOWN_1993 UNKNOWN_1987, Faaberg_1996
189 Dokland_2004 West Nile Virus Core Protein Tetramer Structure and Ribbon Formation Dokland, Terje; Walsh, Martin; Mackenzie, Jason M.; Khromykh, Alexander A.; Ee, Kim-Huey; Wang, Sifang 2004 2004-07-31 PMC N 15242592.0 10.1016/j.str.2004.04.024 6t8jrm66 0.543912 Ryu_W_2017, Pong_2011, Gomis-Rüth_2003, Narayanan_2003
190 Hsu_C_2004 Immunological, structural, and preliminary X-ray diffraction characterizations of the fusion core of the SARS-coronavirus spike protein Hsu, Chun-Hua; Ko, Tzu-Ping; Yu, Hui-Ming; Tang, Tswen-Kei; Chen, Shui-Tsung; Wang, Andrew H.-J. 2004 2004-11-12 PMC N PMC7092949 15474492.0 10.1016/j.bbrc.2004.09.116 19h2i631 0.541568 Pong_2011, Volmer_2010, UNKNOWN_1987, Gomis-Rüth_2003, Callison_1999 Yuan_2004, Yang_2009, Guillén_2009, Voß_D_2009
191 Lu_G_2013 Molecular basis of binding between novel human coronavirus MERS-CoV and its receptor CD26 Lu, Guangwen; Hu, Yawei; Wang, Qihui; Qi, Jianxun; Gao, Feng; Li, Yan; Zhang, Yanfang; Zhang, Wei; Yuan, Yuan; Bao, Jinku; Zhang, Buchang; Shi, Yi; Yan, Jinghua; Gao, George F. 2013 2013-07-07 PMC N PMC7095341 23831647.0 10.1038/nature12328 3nd6ptrg 0.539439 UNKNOWN_1987, Ivarsson_2012, Volmer_2010, Pong_2011, Smith_2003 Chen_2017, Elshabrawy_2012, Niemeyer_2018
192 Roy_S_2020 Dynamical asymmetry exposes 2019-nCoV prefusion spike Susmita Roy 2020 2020-04-22 BioRxiv Y 10.1101/2020.04.20.052290 29n9tsk9 0.538418 Ivarsson_2012, Li_F_2016, Ruiz-Herrero_2015, Cheng_2012, Shen_2014
193 Bosch_2005 Spike protein assembly into the coronavirion: exploring the limits of its sequence requirements Bosch, Berend Jan; de Haan, Cornelis A.M.; Smits, Saskia L.; Rottier, Peter J.M. 2005 2005-04-10 PMC N PMC7111810 15780881.0 10.1016/j.virol.2005.02.001 ioxljlcu 0.536094 UNKNOWN_1987, UNKNOWN_1993, Volmer_2010, Chang_2000, UNKNOWN_1993 Voß_D_2009, Chang_2000
194 Rutten_2020 Structure-Based Design of Prefusion-Stabilized Filovirus Glycoprotein Trimers Rutten, Lucy; Gilman, Morgan S.A.; Blokland, Sven; Juraszek, Jarek; McLellan, Jason S.; Langedijk, Johannes P.M. 2020 2020-03-31 None N PMC7118701 32234486.0 10.1016/j.celrep.2020.03.025 kez0m3ae 0.535379 Gomis-Rüth_2003, Pong_2011, Dey_A_2009, UNKNOWN_1987 Koellhoffer_2012, Wang_2016
195 Han_X_2017 Structure of the S1 subunit C-terminal domain from bat-derived coronavirus HKU5 spike protein Han, Xue; Qi, Jianxun; Song, Hao; Wang, Qihui; Zhang, Yanfang; Wu, Ying; Lu, Guangwen; Yuen, Kwok-Yung; Shi, Yi; Gao, George F. 2017 2017-07-31 PMC N PMC7111649 28432925.0 10.1016/j.virol.2017.04.016 b4eehp3o 0.534923 Volmer_2010, UNKNOWN_1987, Callison_1999, Ivarsson_2012, Gorbalenya_1988 Ou_X_2017, Cheng_2019, Yu_J_2020
196 Spencer_2006 Characterisation of the RNA binding properties of the coronavirus infectious bronchitis virus nucleocapsid protein amino-terminal region Spencer, Kelly-Anne; Hiscox, Julian A. 2006 2006-10-30 PMC N PMC7094245 17052713.0 10.1016/j.febslet.2006.09.052 50gce6f1 0.534309 Stork_2011, Pong_2011, Narayanan_2003, Meyerson_2017 Zhang_2015, Masters_1992, Zhou_2000
197 Ho_S_2009 Structural bioinformatics analysis of free cysteines in protein environments Ho, Sheau Ling; Wang, Andrew H.-J. 2009 2009-03-31 PMC N PMC7102755 10.1016/j.jtice.2008.07.015 2hx4fuk2 0.533394 Yang_2012, Ivarsson_2012, UNKNOWN_1987, Smith_2003 Lee_G_2012
198 Liu_Z_2013 Evidences for the unfolding mechanism of three-dimensional domain swapping Liu, Zhirong; Huang, Yongqi 2013 2013-01-17 PMC N PMC3595458 23238853.0 10.1002/pro.2209 ehd837s5 0.532392 Ivarsson_2012, Smith_2003, UNKNOWN_1987, Chang_2000, Gorbalenya_1988 Hayashi_2016, Someya_2008
199 Hayashi_2016 Domain swapping oligomerization of thermostable c-type cytochrome in E. coli cells Hayashi, Yugo; Yamanaka, Masaru; Nagao, Satoshi; Komori, Hirofumi; Higuchi, Yoshiki; Hirota, Shun 2016 2016-02-03 None N PMC4738263 26838805.0 10.1038/srep19334 5idvp8ar 0.530856 Hou_L_2014, UNKNOWN_1987, Gomis-Rüth_2003, Smith_2003 Singleton_2018, Someya_2008
200 Takeda_2012 1.12 Labeling Techniques Takeda, M.; Kainosho, M. 2012 2012-12-31 PMC N PMC7151895 10.1016/b978-0-12-374920-8.00116-8 cvib20ca 0.530842 Arkin_2006, Fotopoulou_2018, May_E_2016, DiMaio_2016 Miyanoiri_2018, Kainosho_2017, Lee_G_2012, Longhini_2016
201 Garry_2020 Proteomics Computational Analyses Suggest That the Envelope Glycoproteins of Segmented Jingmen Flavi-Like Viruses are Class II Viral Fusion Proteins (β-Penetrenes) with Mucin-Like Domains Garry, Courtney E.; Garry, Robert F. 2020 2020-02-27 COMM-USE N PMC7150890 32120884.0 10.3390/v12030260 fhxdmv31 0.530126 UNKNOWN_1987, Ivarsson_2012, Yang_2012, Chang_2000, UNKNOWN_1993
202 Ji_W_2019 Salt bridge-forming residues positioned over viral peptides presented by MHC class I impacts T-cell recognition in a binding-dependent manner Ji, Wei; Niu, Ling; Peng, Weiyu; Zhang, Yongli; Cheng, Hao; Gao, Feng; Shi, Yi; Qi, Jianxun; Gao, George F.; Liu, William J. 2019 2019-08-31 PMC N PMC7112684 31226552.0 10.1016/j.molimm.2019.06.005 z5vmhopa 0.529047 Lavi_1988, Hausmann_1997, Ivarsson_2012, UNKNOWN_1986 Kim_S_2012, Yuan_2020, Jia_X_2012
203 Garry_2019 Proteomics Computational Analyses Suggest that the Antennavirus Glycoprotein Complex Includes a Class I Viral Fusion Protein (α-Penetrene) with an Internal Zinc-Binding Domain and a Stable Signal Peptide Garry, Courtney E.; Garry, Robert F. 2019 2019-08-14 COMM-USE N PMC6722660 31416162.0 10.3390/v11080750 ebo78pd3 0.528272 Gorbalenya_1988, UNKNOWN_1987, Ivarsson_2012, Mushegian_2018, Staple_2005 Garry_2009
204 Beniac_2007 Conformational Reorganization of the SARS Coronavirus Spike Following Receptor Binding: Implications for Membrane Fusion Beniac, Daniel R.; deVarennes, Shauna L.; Andonov, Anton; He, Runtao; Booth, Tim F. 2007 2007-10-24 COMM-USE N PMC2034598 17957264.0 10.1371/journal.pone.0001082 mcsdem7y 0.528132 Volmer_2010, UNKNOWN_1987, Gomis-Rüth_2003, Popescu_2011, Chang_2000 Du_L_2007, Voß_D_2009, Guillén_2009
205 Wang_2008 Severe acute respiratory syndrome coronavirus nucleocapsid protein confers ability to efficiently produce virus-like particles when substituted for the human immunodeficiency virus nucleocapsid domain Wang, Shui-Mei; Chang, Yu-Fen; Chen, Yi-Ming Arthur; Wang, Chin-Tien 2008 2008-07-01 PMC N PMC7088652 18592403.0 10.1007/s11373-008-9265-8 i267t23m 0.527934 Volmer_2010, Tallmadge_2008, Narayanan_2003, Kang_2009, Pong_2011 Wang_2009
206 Park_2018 Structure of the type VI secretion system TssK–TssF–TssG baseplate subcomplex revealed by cryo-electron microscopy Park, Young-Jun; Lacourse, Kaitlyn D.; Cambillau, Christian; DiMaio, Frank; Mougous, Joseph D.; Veesler, David 2018 2018-12-19 COMM-USE N PMC6300606 30568167.0 10.1038/s41467-018-07796-5 mrvjd7pf 0.527664 Ivarsson_2012, Dubois_2016, Weissenhorn_2013, Cosson_2013, Gorbalenya_1988 Michalska_2018, Spaulding_2018, Vasquez-Del_Carpio_2006
207 Raabe_1989 Nucleotide sequence of the gene encoding the membrane protein of human coronavirus 229 E Raabe, T.; Siddell, S. G. 1989 1989-01-01 PMC N PMC7086871 2818210.0 10.1007/bf01317928 a7y4qh8k 0.524375 Luytjes_1988, Gorbalenya_1988, Tohya_1991, Morikawa_1992 Jouvenne_1990, Boursnell_1984
208 Guillén_2008 Membrane insertion of the three main membranotropic sequences from SARS-CoV S2 glycoprotein Guillén, Jaime; Kinnunen, Paavo K.J.; Villalaín, José 2008 2008-12-31 PMC N PMC7157930 18721794.0 10.1016/j.bbamem.2008.07.021 99cs0qia 0.523027 UNKNOWN_1987, Volmer_2010, UNKNOWN_1993, UNKNOWN_1993, Chang_2000 Guillén_2009, Voß_D_2009, Chen_2009, Yuan_2004
209 Shang_2020 Structure of mouse coronavirus spike protein complexed with receptor reveals mechanism for viral entry Shang, Jian; Wan, Yushun; Liu, Chang; Yount, Boyd; Gully, Kendra; Yang, Yang; Auerbach, Ashley; Peng, Guiqing; Baric, Ralph; Li, Fang 2020 2020-03-09 COMM-USE N PMC7082060 32150576.0 10.1371/journal.ppat.1008392 daj4zcm1 0.522591 Li_F_2016, Ivarsson_2012, Gomis-Rüth_2003, Volmer_2010, Greene_2012 Du_L_2007, Beniac_2007
210 Parthasarathy_2012 Expression and purification of coronavirus envelope proteins using a modified β-barrel construct Parthasarathy, Krupakar; Lu, Huang; Surya, Wahyu; Vararattanavech, Ardcharaporn; Pervushin, Konstantin; Torres, Jaume 2012 2012-09-30 PMC N PMC7129850 22819936.0 10.1016/j.pep.2012.07.005 4jg4t8po 0.522368 UNKNOWN_1987, Volmer_2010, Chang_2000, Shen_2005, Yang_2012 Chen_2009, Voß_D_2009
211 Rodríguez_2015 Generation of monoclonal antibodies specific of the postfusion conformation of the Pneumovirinae fusion (F) protein Rodríguez, Laura; Olmedillas, Eduardo; Mas, Vicente; Vázquez, Mónica; Cano, Olga; Terrón, María C.; Luque, Daniel; Palomo, Concepción; Melero, José A. 2015 2015-11-30 PMC N PMC7119586 26275682.0 10.1016/j.jviromet.2015.08.002 jbjthyhk 0.522046 Gomis-Rüth_2003, Pong_2011, UNKNOWN_1987, Volmer_2010, Chang_2000 Yin_H_2006
212 Yao_Q_2013 Negatively charged residues in the endodomain are critical for specific assembly of spike protein into murine coronavirus Yao, Qianqian; Masters, Paul S.; Ye, Rong 2013 2013-07-20 PMC N PMC3772176 23628137.0 10.1016/j.virol.2013.04.001 67bbmo4m 0.521146 Tallmadge_2008, Gomis-Rüth_2003, Pong_2011, Meyerson_2017 Voß_D_2009
213 Den_Boon_1991 Another triple-spanning envelope protein among intracellularly budding RNA viruses: The torovirus E protein Den Boon, Johan A.; Snijder, Eric J.; Locker, Jacomine Krijnse; Horzinek, Marian C.; Rottier, Peter J.M. 1991 1991-06-30 PMC N PMC7130535 2024492.0 10.1016/0042-6822(91)90606-c 1qtqotss 0.520913 Volmer_2010, UNKNOWN_1987, UNKNOWN_1993, Maeda_2001, UNKNOWN_1993 Faaberg_1996
214 Zhang_2004 The 3D structure analysis of SARS-CoV S1 protein reveals a link to influenza virus neuraminidase and implications for drug and antibody discovery Zhang, Xue Wu; Yap, Yee Leng 2004 2004-07-26 PMC N PMC7126208 10.1016/j.theochem.2004.04.065 awyln0kk 0.520419 Naito_2007, Tallmadge_2008, Hu_W_2013, Pong_2011 Wu_Zhang_2004, Du_L_2007, Guillén_2009
215 Sun_Y_2017 Identification of a Novel Inhibitor against Middle East Respiratory Syndrome Coronavirus Sun, Yaping; Zhang, Huaidong; Shi, Jian; Zhang, Zhe; Gong, Rui 2017 2017-09-14 COMM-USE N PMC5618021 28906430.0 10.3390/v9090255 x86d5pvb 0.519635 UNKNOWN_1987, Pong_2011, Volmer_2010, Naito_2007, Kang_2009 Channappanavar_2015, Chen_2017, Xia_S_2019
216 Song_2014 Identification of residues on human receptor DPP4 critical for MERS-CoV binding and entry Song, Wenfei; Wang, Ying; Wang, Nianshuang; Wang, Dongli; Guo, Jianying; Fu, Lili; Shi, Xuanling 2014 2014-12-31 PMC N PMC7112127 25461530.0 10.1016/j.virol.2014.10.006 aywdmj6o 0.519549 Ivarsson_2012, Pong_2011, Smith_2003, Gomis-Rüth_2003, Ban_J_2018 Elshabrawy_2012, Wang_2013, Yuan_2004
217 Puglisi_1990 Conformation of an RNA pseudoknot Puglisi, Joseph D.; Wyatt, Jacqueline R.; Tinoco, Ignacio 1990 1990-07-20 PMC N 1696318.0 10.1016/0022-2836(90)90192-o ps4y6kri 0.519409 Kierzek_2006, Guo_Y_2013, Atkins_1999, Fernando_2008 Cornish_2006, Myllykoski_2017
218 Tsai_2010 Essential covalent linkage between the chymotrypsin-like domain and the extra domain of the SARS-CoV main protease Tsai, Meng-Ying; Chang, Wei-Hsin; Liang, Jin-Yi; Lin, Long-Liu; Chang, Gu-Gang; Chang, Hui-Ping 2010 2010-08-28 PMC N PMC7110190 20587646.0 10.1093/jb/mvq071 w2q5468y 0.519053 UNKNOWN_1987, Ivarsson_2012, Smith_2003, Chang_2000, Sato_2019 Piñón_1997
219 Polanco_2018 On the Regularities of the Polar Profiles of Proteins Related to Ebola Virus Infection and their Functional Domains Polanco, Carlos; Samaniego Mendoza, José Lino; Buhse, Thomas; Uversky, Vladimir N.; Bañuelos Chao, Ingrid Paola; Bañuelos Cedano, Marcela Angola; Tavera, Fernando Michel; Tavera, Daniel Michel; Falconi, Manuel; Ponce de León, Abelardo Vela 2018 2018-03-06 PMC N PMC7090660 29511990.0 10.1007/s12013-018-0839-4 6tkrctgc 0.518964 Volmer_2010, UNKNOWN_1987, Callison_1999, Auewarakul_2005, Cheng_2012 Zhang_2015, Kumar_2013, Ao_D_2015
220 Peisajovich_2000 Paramyxovirus F1 protein has two fusion peptides: implications for the mechanism of membrane fusion 1 1 Edited by A. R.Fersht Peisajovich, Sergio Gerardo; Samuel, Orit; Shai, Yechiel 2000 2000-03-10 PMC N PMC7127493 10698638.0 10.1006/jmbi.2000.3543 bvihscxo 0.518838 UNKNOWN_1987, Volmer_2010, UNKNOWN_1993, Chang_2000, UNKNOWN_1993 Piñón_1997
221 Doll_2015 Design and optimization of peptide nanoparticles Doll, Tais A. P. F.; Dey, Raja; Burkhard, Peter 2015 2015-10-24 COMM-USE N PMC4619341 26498651.0 10.1186/s12951-015-0119-z 6gsmkmk5 0.518702 Ivarsson_2012, UNKNOWN_1987, Gomis-Rüth_2003, Qi_Z_2018, Wang_2014 Wang_2018, Doll_2015, Robinson_2013
222 Clarkson_2009 Mesodynamics in the SARS nucleocapsid measured by NMR field cycling Clarkson, Michael W.; Lei, Ming; Eisenmesser, Elan Z.; Labeikovsky, Wladimir; Redfield, Alfred; Kern, Dorothee 2009 2009-07-30 NONCOMM N PMC2728245 19641854.0 10.1007/s10858-009-9347-6 zso72hho 0.518495 Qi_Z_2018, Liao_2006, CAO_S_2012, Chang_2011 Luo_H_2004, Vicente_2015, Ramírez-Sarmiento_2015
223 Ghosh_2018 Structural insights of a self-assembling 9-residue peptide from the C-terminal tail of the SARS corona virus E-protein in DPC and SDS micelles: A combined high and low resolution spectroscopic study Ghosh, Anirban; Bhattacharyya, Dipita; Bhunia, Anirban 2018 2018-02-28 None N PMC7094419 29038024.0 10.1016/j.bbamem.2017.10.015 kk1pk8fn 0.517986 Volmer_2010, Gomis-Rüth_2003, UNKNOWN_1987, Ivarsson_2012, Cosson_2013 Voß_D_2009, Guillén_2009, Vazquez_2017
224 Aydin_2014 Influence of hydrophobic and electrostatic residues on SARS-coronavirus S2 protein stability: Insights into mechanisms of general viral fusion and inhibitor design Aydin, Halil; Al-Khooly, Dina; Lee, Jeffrey E 2014 2014-03-19 PMC N PMC4005712 24519901.0 10.1002/pro.2442 lgppfs4j 0.517861 UNKNOWN_1987, Ivarsson_2012, Chang_2000, Volmer_2010, Gomis-Rüth_2003 Guillén_2009, Voß_D_2009, Du_L_2007, Wang_2009
225 Lenman_2018 Polysialic acid is a cellular receptor for human adenovirus 52 Lenman, Annasara; Liaci, A. Manuel; Liu, Yan; Frängsmyr, Lars; Frank, Martin; Blaum, Bärbel S.; Chai, Wengang; Podgorski, Iva I.; Harrach, Balázs; Benkő, Mária; Feizi, Ten; Stehle, Thilo; Arnberg, Niklas 2018 2018-05-01 NONCOMM N PMC5939068 29674446.0 10.1073/pnas.1716900115 pivbr2ke 0.516187 Ivarsson_2012, Volmer_2010, UNKNOWN_1987, Trobaugh_2017, Choudhury_2017
226 Mavrakis_2004 Structure and Function of the C-terminal Domain of the Polymerase Cofactor of Rabies Virus Mavrakis, Manos; McCarthy, Andrew A.; Roche, Stéphane; Blondel, Danielle; Ruigrok, Rob W.H. 2004 2004-10-29 PMC N 15476803.0 10.1016/j.jmb.2004.08.071 0ia91j2b 0.515878 Pong_2011, Stork_2011, Volmer_2010, Gomis-Rüth_2003, Kang_2009
227 Shajahan_2020 Deducing the N- and O-glycosylation profile of the spike protein of novel coronavirus SARS-CoV-2 Asif Shajahan; Nitin T. Supekar; Anne S. Gleinich; Parastoo Azadi 2020 2020-04-03 BioRxiv Y 10.1101/2020.04.01.020966 f0xsisdg 0.514590 Volmer_2010, Ivarsson_2012, UNKNOWN_1987, Trobaugh_2017, Callison_1999 Voß_D_2009, Du_L_2007, Liu_M_2006, Kumar_2007
228 Ma_H_2007 Characterization of the cleavage of signal peptide at the C-terminus of hepatitis C virus core protein by signal peptide peptidase Ma, Hsin-Chieh; Ku, Yi-Yung; Hsieh, Yi-Ching; Lo, Shih-Yen 2007 2007-01-20 PMC N PMC7088784 17237979.0 10.1007/s11373-006-9127-1 g7uk1hsz 0.514368 UNKNOWN_1987, UNKNOWN_1993, Yang_2010, Chang_2000, Volmer_2010
229 Chen_2020 Distinct Structural Flexibility within SARS-CoV-2 Spike Protein Reveals Potential Therapeutic Targets Serena H. Chen; M. Todd Young; John Gounley; Christopher Stanley; Debsindhu Bhowmik 2020 2020-04-18 BioRxiv Y 10.1101/2020.04.17.047548 klb8oe9q 0.513668 Volmer_2010, Callison_1999, UNKNOWN_1987, Li_F_2016, Ivarsson_2012
230 Kumar_2013 Elucidating the Interacting Domains of Chandipura Virus Nucleocapsid Protein Kumar, Kapila; Rajasekharan, Sreejith; Gulati, Sahil; Rana, Jyoti; Gabrani, Reema; Jain, Chakresh K.; Gupta, Amita; Chaudhary, Vijay K.; Gupta, Sanjay 2013 2013-10-28 COMM-USE N PMC3830837 24288532.0 10.1155/2013/594319 gxp4sqq0 0.513208 Gorbalenya_1988, Pong_2011, Kang_2009, Volmer_2010, UNKNOWN_1987 Zhang_2015, Sun_D_2016, Guo_Y_2003, Ao_D_2015
231 Zhang_2019 Crystal Structure of Refolding Fusion Core of Lassa Virus GP2 and Design of Lassa Virus Fusion Inhibitors Zhang, Xuejiao; Wang, Cong; Chen, Baohua; Wang, Qian; Xu, Wei; Ye, Sheng; Jiang, Shibo; Zhu, Yun; Zhang, Rongguang 2019 2019-08-13 COMM-USE N PMC6700223 31456769.0 10.3389/fmicb.2019.01829 l5r67gte 0.512778 Gomis-Rüth_2003, Pong_2011, Gnirß_2014, UNKNOWN_1987 Koellhoffer_2012, Yuan_2004, Harrison_2011
232 Ospina_2011 Protein oligomerization mediated by the transmembrane carboxyl terminal domain of Bcl-XL Ospina, Angélica; Lagunas-Martínez, Alfredo; Pardo, Julián; Carrodeguas, José A. 2011 2011-10-03 None N PMC7164028 21856303.0 10.1016/j.febslet.2011.08.012 uw9ygfe6 0.511162 Smith_2003, Greene_2012, Blank_2017, Ivarsson_2012 UNKNOWN_1994, Tsukamoto_2013
233 Rossmann_2005 Combining X-Ray Crystallography and Electron Microscopy Rossmann, Michael G.; Morais, Marc C.; Leiman, Petr G.; Zhang, Wei 2005 2005-03-31 PMC N 15766536.0 10.1016/j.str.2005.01.005 qnh6tlnm 0.510784 DiMaio_2016, Chang_2011, Dawson_2007, Qi_Z_2018
234 Huang_2019 FEZ1 Is Recruited to a Conserved Cofactor Site on Capsid to Promote HIV-1 Trafficking Huang, Pei-Tzu; Summers, Brady James; Xu, Chaoyi; Perilla, Juan R.; Malikov, Viacheslav; Naghavi, Mojgan H.; Xiong, Yong 2019 2019-08-01 PMC N PMC6736649 31422020.0 10.1016/j.celrep.2019.07.079 jppo6b04 0.510109 Gomis-Rüth_2003, Pong_2011, Yasuda-Inoue_2013, Greene_2012 Neufeldt_2016, Jarboui_2012
235 Carmo_2014 Discovery of a new antiviral protein isolated Lonomia obliqua analysed by bioinformatics and real-time approaches Carmo, Ana Carolina Viegas; Yamasaki, Lilian Hiromi Tomanari; Figueiredo, Cristina Adelaide; da Silva Giovanni, Dalton Nogueira; de Oliveira, Maria Isabel; dos Santos, Fabiana Cristina Pereira; Curti, Suely Pires; Rahal, Paula; Mendonça, Ronaldo Zucatelli 2014 2014-06-08 PMC N PMC4628924 24908059.0 10.1007/s10616-014-9740-1 clwkj4wa 0.510109 Volmer_2010, Kang_2009, Rice_1992, Stork_2011, Naito_2007 Carmo_2012, Pastorino_2008, Lee_C_2019, Ren_X_2008
236 Neuman_2014 Atlas of coronavirus replicase structure Neuman, Benjamin W.; Chamberlain, Peter; Bowden, Fern; Joseph, Jeremiah 2014 2014-12-19 PMC N PMC7114488 24355834.0 10.1016/j.virusres.2013.12.004 q5332l0s 0.508791 Liu_Z_2008, Volmer_2010, Trobaugh_2017, den_Boon_2010 Bartlam_2005, Niemeyer_2018, Sutton_2004, Graham_2008
237 Siqueira_2017 In silico analysis of the cyanobacterial lectin scytovirin: new insights into binding properties Siqueira, Andrei Santos; Lima, Alex Ranieri Jerônimo; de Souza, Rafael Conceição; Santos, Alberdan Silva; Vianez Júnior, João Lídio da Silva Gonçalves; Gonçalves, Evonnildo Costa 2017 2017-07-29 PMC N PMC7088960 28756560.0 10.1007/s11033-017-4116-1 iz9klwvp 0.508370 Callison_1999, UNKNOWN_1987, Wu_G_2005, Volmer_2010, Gorbalenya_1988 Yap_Y_2005, Sun_D_2019, Yu_L_2017
238 Eichhorn_2011 Unraveling the structural complexity in a single-stranded RNA tail: implications for efficient ligand binding in the prequeuosine riboswitch Eichhorn, Catherine D.; Feng, Jun; Suddala, Krishna C.; Walter, Nils G.; Brooks, Charles L.; Al-Hashimi, Hashim M. 2011 2011-10-18 NONCOMM N PMC3273816 22009676.0 10.1093/nar/gkr833 kci1lkhj 0.508117 Chan_2016, Guo_Y_2013, Wu_B_2009, Ivarsson_2012, Stork_2011 Vasquez-Del_Carpio_2006, Scrima_2004
239 Garry_2004 Proteomics computational analyses suggest that the carboxyl terminal glycoproteins of Bunyaviruses are class II viral fusion protein (beta-penetrenes) Garry, Courtney E; Garry, Robert F 2004 2004-11-15 COMM-USE N PMC535339 15544707.0 10.1186/1742-4682-1-10 jzj8q25c 0.507338 Ryu_W_2017, Crowe_2014, Rice_1992, Gorbalenya_1988, Pong_2011 Garry_2009, Voß_D_2009
240 Bénard_1996 Pseudoknot and translational control in the expression of the S15 ribosomal protein Bénard, L; Philippe, C; Ehresmann, B; Ehresmann, C; Portier, C 1996 1996-12-31 PMC N PMC7131963 8955900.0 10.1016/s0300-9084(96)80003-4 lds6a5h0 0.506143 Ivanova_2015, Krause_1987, Dubois_2016, Morikawa_1992 Powell_2011, Napthine_2009
241 Jia_X_2012 Structural Basis of Evasion of Cellular Adaptive Immunity by HIV-1 Nef Jia, Xiaofei; Singh, Rajendra; Homann, Stefanie; Yang, Haitao; Guatelli, John; Xiong, Yong 2012 2012-06-17 PMC N PMC3407041 22705789.0 10.1038/nsmb.2328 h6m1mhkd 0.505889 Ivarsson_2012, Gomis-Rüth_2003, UNKNOWN_1986, Greene_2012 Porter_2010
242 Jaimes_2020 Phylogenetic Analysis and Structural Modeling of SARS-CoV-2 Spike Protein Reveals an Evolutionary Distinct and Proteolytically Sensitive Activation Loop Jaimes, Javier A.; André, Nicole M.; Chappie, Joshua S.; Millet, Jean K.; Whittaker, Gary R. 2020 2020-04-19 PMC Y 10.1016/j.jmb.2020.04.009 26pcjts9 0.504967 Volmer_2010, Callison_1999, UNKNOWN_1987, Luytjes_1988, Ryu_W_2017
243 Chen_2020 Structure analysis of the receptor binding of 2019-nCoV Chen, Yun; Guo, Yao; Pan, Yihang; Zhao, Zhizhuang Joe 2020 2020-01-01 None Y 10.1016/j.bbrc.2020.02.071 647zcjgu 0.504109 Volmer_2010, UNKNOWN_1987, Ivarsson_2012, Yang_2012, Gorbalenya_1988 Yuan_2004, Guillén_2009, Wang_2013, Elshabrawy_2012
244 Karska_2019 Structure determination of UL49.5 transmembrane protein from bovine herpesvirus 1 by NMR spectroscopy and molecular dynamics Karska, Natalia; Graul, Małgorzata; Sikorska, Emilia; Zhukov, Igor; Ślusarz, Magdalena J.; Kasprzykowski, Franciszek; Lipińska, Andrea D.; Rodziewicz-Motowidło, Sylwia 2019 2019-05-01 PMC N PMC7089609 30772281.0 10.1016/j.bbamem.2019.02.005 mu4ez8j7 0.503637 Volmer_2010, Ivarsson_2012, UNKNOWN_1987, Gomis-Rüth_2003, Pong_2011 Zhang_2015, Eshaghi_2005, Piñón_1997
245 Zaucha_2020 Deep learning model can predict water binding sites on the surface of proteins using limited-resolution data Jan Zaucha; Charlotte A. Softley; Michael Sattler; Grzegorz M. Popowicz 2020 2020-04-21 BioRxiv Y 10.1101/2020.04.20.050393 sy3n8v7f 0.503087 Qi_Z_2018, Kirillova_2009, Chang_2011, Dai_Q_2012, Lee_C_2017
246 Li_W_2011 Cross-Crystal Averaging with Search Models to Improve Molecular Replacement Phases Li, Weikai; Li, Fang 2011 2011-02-09 None N PMC3037595 21300285.0 10.1016/j.str.2010.12.007 in8mbp7c 0.500886 Qi_Z_2018, Chang_2011, Polverino_2017, Bocharov_2018, Dai_Q_2012 RAMAKRISHNA_2015, Jonić_2016, Frenz_2019
247 Cheng_2019 Crystal structure of the S1 subunit N-terminal domain from DcCoV UAE-HKU23 spike protein Cheng, Yanwei; He, Bin; Yang, Jing; Ye, Fei; Lin, Sheng; Yang, Fanli; Chen, Zimin; Chen, Zhujun; Cao, Yu; Lu, Guangwen 2019 2019-09-30 PMC N PMC7112003 31279241.0 10.1016/j.virol.2019.06.015 fsv5cuxe 0.500723 Ivarsson_2012, Volmer_2010, UNKNOWN_1987, Gorbalenya_1988, Choudhury_2017 Someya_2008, Voß_D_2009, Kanitz_2019, Yang_2009
248 Wong_2017 Receptor-binding loops in alphacoronavirus adaptation and evolution Wong, Alan H. M.; Tomlinson, Aidan C. A.; Zhou, Dongxia; Satkunarajah, Malathy; Chen, Kevin; Sharon, Chetna; Desforges, Marc; Talbot, Pierre J.; Rini, James M. 2017 2017-11-23 COMM-USE N PMC5701055 29170370.0 10.1038/s41467-017-01706-x qffg6r91 0.500723 Volmer_2010, Ivarsson_2012, UNKNOWN_1987, Callison_1999, Pong_2011
249 Leckband_2011 Geometry and Adhesion of Extracellular Domains of DC-SIGNR Neck Length Variants Analyzed by Force–Distance Measurements Leckband, Deborah E.; Menon, Sindhu; Rosenberg, Kenneth; Graham, Sarah A.; Taylor, Maureen E.; Drickamer, Kurt 2011 2011-06-08 PMC N PMC3140775 21650186.0 10.1021/bi2003444 cjzecgrb 0.500682 Ivarsson_2012, UNKNOWN_1987, Yu_Q_2009, Snyder_2005 Yu_Q_2009, Snyder_2005, dos_Santos_2016
250 Madu_2009 SARS-coronavirus spike S2 domain flanked by cysteine residues C822 and C833 is important for activation of membrane fusion Madu, Ikenna G.; Belouzard, Sandrine; Whittaker, Gary R. 2009 2009-10-25 PMC N PMC3594805 19717178.0 10.1016/j.virol.2009.07.038 i4e5jq7a 0.500656 UNKNOWN_1987, Chang_2000, Volmer_2010, Pong_2011, Kang_2009 Guillén_2009, Du_L_2007
251 Lee_Y_2005 Thermal aggregation of SARS-CoV membrane protein Lee, Yi-Nung; Chen, Li-Kuang; Ma, Hsin-Chieh; Yang, Hui-Hua; Li, Hsin-Pai; Lo, Shih-Yen 2005 2005-11-30 PMC N PMC7112854 16023741.0 10.1016/j.jviromet.2005.05.022 8cx8ryng 0.500514 Volmer_2010, UNKNOWN_1987, Gomis-Rüth_2003, UNKNOWN_1993 Voß_D_2009, Chen_2009, Du_L_2007, Yuan_2005
252 Huang_2013 AlGaN/GaN high electron mobility transistors for protein–peptide binding affinity study Huang, Chih-Cheng; Lee, Geng-Yen; Chyi, Jen-Inn; Cheng, Hui-Teng; Hsu, Chen-Pin; Hsu, You-Ren; Hsu, Chia-Hsien; Huang, Yu-Fen; Sun, Yuh-Chang; Chen, Chih-Chen; Li, Sheng-Shian; Andrew Yeh, J.; Yao, Da-Jeng; Ren, Fan; Wang, Yu-Lin 2013 2013-03-15 None N PMC7157921 23102432.0 10.1016/j.bios.2012.09.066 bmz8995u 0.500506 Jiang_2011, Qi_Z_2018, Chang_2011, Polverino_2017, Dai_Q_2012 Hsu_Y_2014, Huang_2017, Chu_R_2014, Wear_2005
253 Beniac_2012 The Organisation of Ebola Virus Reveals a Capacity for Extensive, Modular Polyploidy Beniac, Daniel R.; Melito, Pasquale L.; deVarennes, Shauna L.; Hiebert, Shannon L.; Rabb, Melissa J.; Lamboo, Lindsey L.; Jones, Steven M.; Booth, Timothy F. 2012 2012-01-11 COMM-USE N PMC3256159 22247782.0 10.1371/journal.pone.0029608 adfigzc1 0.500499 Gomis-Rüth_2003, den_Boon_2010, Tallmadge_2008, Pong_2011, Volmer_2010 Effantin_2016, Thuy_2013, Wulan_2015
254 Koellhoffer_2012 Crystal Structure of the Marburg Virus GP2 Core Domain in its Post-Fusion Conformation Koellhoffer, Jayne F.; Malashkevich, Vladimir N.; Harrison, Joseph S.; Toro, Rafael; Bhosle, Rahul C.; Chandran, Kartik; Almo, Steven C.; Lai, Jonathan R. 2012 2012-09-19 PMC N PMC3464016 22935026.0 10.1021/bi300976m k2j2uqfh 0.497946 Gomis-Rüth_2003, UNKNOWN_1987, Pong_2011, Chang_2000, Diaz_2011 Harrison_2011, Yin_H_2006
255 Kliger_2003 Cloaked similarity between HIV-1 and SARS-CoV suggests an anti-SARS strategy Kliger, Yossef; Levanon, Erez Y 2003 2003-09-21 PMC Y PMC222911 14499001.0 10.1186/1471-2180-3-20 qj4dh6rg 0.497398 UNKNOWN_1987, Pong_2011, Kang_2009, Chang_2000, Gorbalenya_1988 Niemeyer_2018, Veiga_2006, Ng_O_2014, Guillén_2009
256 Ma_G_2005 Biochemical and biophysical characterization of the transmissible gastroenteritis coronavirus fusion core Ma, Guangpeng; Feng, Youjun; Gao, Feng; Wang, Jinzi; Liu, Cheng; Li, Yijing 2005 2005-12-02 PMC N PMC7092864 16236266.0 10.1016/j.bbrc.2005.09.189 60h9ua25 0.496451 Volmer_2010, UNKNOWN_1987, Rice_1992, Pong_2011, Gomis-Rüth_2003 O'Connor_1999, Sun_Y_2018, Zhang_2015, Ren_X_2008
257 Struck_2012 A hexapeptide of the receptor-binding domain of SARS corona virus spike protein blocks viral entry into host cells via the human receptor ACE2 Struck, Anna-Winona; Axmann, Marco; Pfefferle, Susanne; Drosten, Christian; Meyer, Bernd 2012 2012-06-30 PMC N PMC7114193 22265858.0 10.1016/j.antiviral.2011.12.012 f5lmstyn 0.495987 Tallmadge_2008, Ban_J_2018, Pong_2011, Meyerson_2017, Kang_2009 Yuan_2004, Du_L_2007, Guillén_2009
258 Yuan_2020 A highly conserved cryptic epitope in the receptor-binding domains of SARS-CoV-2 and SARS-CoV Meng Yuan; Nicholas C. Wu; Xueyong Zhu; Chang-Chun D. Lee; Ray T. Y. So; Huibin Lv; Chris K. P. Mok; Ian A. Wilson 2020 2020-03-14 BioRxiv Y 10.1101/2020.03.13.991570 f03ka7bd 0.494421 Volmer_2010, UNKNOWN_1987, Pong_2011, Ivarsson_2012, Gomis-Rüth_2003 Joyce_2020, Elshabrawy_2012, Zheng_2020
259 Jones_2019 Alternative conformations of a major antigenic site on RSV F Jones, Harrison G.; Battles, Michael B.; Lin, Chun-Chi; Bianchi, Siro; Corti, Davide; McLellan, Jason S. 2019 2019-07-15 COMM-USE N PMC6658013 31306469.0 10.1371/journal.ppat.1007944 1r20hl2b 0.494117 Volmer_2010, Dey_A_2009, Pong_2011, Gomis-Rüth_2003, Zhou_2007 Killikelly_2016, Boyington_2016
260 Yuan_2006 Biochemical evidence for the presence of mixed membrane topologies of the severe acute respiratory syndrome coronavirus envelope protein expressed in mammalian cells Yuan, Q.; Liao, Y.; Torres, J.; Tam, J.P.; Liu, D.X. 2006 2006-05-29 PMC N PMC7094218 16684538.0 10.1016/j.febslet.2006.04.076 v3lbrzh8 0.491699 Volmer_2010, UNKNOWN_1987, Maeda_2001, UNKNOWN_1993, UNKNOWN_1993 Voß_D_2009, Chen_2009
261 Bungard_2017 Foldability of a natural de novo evolved protein Bungard, Dixie; Copple, Jacob S.; Yan, Jing; Chhun, Jimmy J.; Kumirov, Vlad K.; Foy, Scott G.; Masel, Joanna; Wysocki, Vicki H.; Cordes, Matthew H. J. 2017 2017-11-01 PMC N PMC5677532 29033289.0 10.1016/j.str.2017.09.006 leeiuknr 0.491060 Staple_2005, Stork_2011, Zúñiga_2009, Dubois_2016 Sabath_2012, Singleton_2018
262 Hsu_Y_2014 Investigation of C-terminal domain of SARS nucleocapsid protein–Duplex DNA interaction using transistors and binding-site models Hsu, You-Ren; Kang, Yen-Wen; Fang, Jung-Ying; Lee, Geng-Yen; Chyi, Jen-Inn; Chang, Chung-ke; Huang, Chih-Cheng; Hsu, Chen-Pin; Huang, Tai-huang; Huang, Yu-Fen; Sun, Yuh-Chang; Hsu, Chia-Hsien; Chen, Chih-Chen; Li, Sheng-Shian; Yeh, J. Andrew; Yao, Da-Jeng; Ren, Fan; Wang, Yu-Lin 2014 2014-03-31 PMC N PMC7126644 10.1016/j.snb.2013.11.087 54xmnum8 0.490512 Jiang_2011, Chan_2016, Stork_2011, Masante_2015, Tosoni_2015 Wei_P_2006, Kanitz_2019, Becker_2016, Moulaei_2010
263 Strong_1991 Biochemical and biophysical characterization of the reovirus cell attachment protein σ1: Evidence that it is a homotrimer Strong, James E.; Leone, Gustavo; Duncan, Roy; Sharma, Rajendra K.; Lee, Patrick W.K. 1991 1991-09-30 PMC N PMC7130766 1871968.0 10.1016/0042-6822(91)90818-v e6460oan 0.490404 Luo_K_1996, UNKNOWN_1987, Leone_1991, UNKNOWN_1993, Maeda_2001 Piñón_1997, Nowak_1984, Eshaghi_2005
264 Tong_2009 Crystal Structure of the N-Acetylmannosamine Kinase Domain of GNE Tong, Yufeng; Tempel, Wolfram; Nedyalkova, Lyudmila; MacKenzie, Farrell; Park, Hee-Won 2009 2009-10-20 COMM-USE N PMC2742894 19841673.0 10.1371/journal.pone.0007165 cijyfa4j 0.490001 Ivarsson_2012, Smith_2003, UNKNOWN_1987, Sato_2019, Morikawa_1992 Myllykoski_2017, Buller_2012
265 Wesolowski_2010 SNARE motif: A common motif used by pathogens to manipulate membrane fusion Wesolowski, Jordan; Paumet, Fabienne 2010 2010-07-01 None N PMC3073298 21178463.0 10.4161/viru.1.4.12195 bnu51jee 0.489668 Ivarsson_2012, Cosson_2013, UNKNOWN_1987, Volmer_2010 Michalska_2018, Zhang_2015
266 Krey_2010 The Disulfide Bonds in Glycoprotein E2 of Hepatitis C Virus Reveal the Tertiary Organization of the Molecule Krey, Thomas; d'Alayer, Jacques; Kikuti, Carlos M.; Saulnier, Aure; Damier-Piolle, Laurence; Petitpas, Isabelle; Johansson, Daniel X.; Tawar, Rajiv G.; Baron, Bruno; Robert, Bruno; England, Patrick; Persson, Mats A. A.; Martin, Annette; Rey, Félix A. 2010 2010-02-19 None N PMC2824758 20174556.0 10.1371/journal.ppat.1000762 8pd6jdb5 0.489396 Volmer_2010, Pong_2011, UNKNOWN_1987, Gomis-Rüth_2003, Kang_2009 Niemann_1982, Voß_D_2009, Popescu_2011
267 Lee_C_2014 Crowning Proteins: Modulating the Protein Surface Properties using Crown Ethers** Lee, Cheng-Chung; Maestre-Reyna, Manuel; Hsu, Kai-Cheng; Wang, Hao-Ching; Liu, Chia-I; Jeng, Wen-Yih; Lin, Li-Ling; Wood, Richard; Chou, Chia-Cheng; Yang, Jinn-Moon; Wang, Andrew H-J 2014 2014-11-24 NONCOMM N PMC4288931 25287606.0 10.1002/anie.201405664 anivjq7i 0.489187 Langosch_2011, Ivarsson_2012, Schmidt_1982, Deng_2008 Moulaei_2010, Robinson_2013, Attioui_1994
268 Zhu_J_2005 Design and Characterization of Viral Polypeptide Inhibitors Targeting Newcastle Disease Virus Fusion Zhu, Jieqing; Jiang, Xiuli; Liu, Yueyong; Tien, Po; Gao, George F. 2005 2005-12-02 PMC N PMC7094301 16253271.0 10.1016/j.jmb.2005.08.078 c9zya2t7 0.489158 Pong_2011, Tallmadge_2008, Volmer_2010, Compton_2014, Rice_1992 Veiga_2006, Valle-Casuso_2020, van_der_Linden_2014, Brun_2014
269 Yadav_2017 Homology Modeling and Protein Interaction Map of CHRNA7 Neurogenesis Protein Yadav, Ruchi; Deepshikha, Deepshikha; Srivastava, Prachi 2017 2017-01-01 PMC N PMC5566677 28867899.0 10.1159/000477155 r7o7sxq2 0.489085 Ivarsson_2012, Smith_2003, Choudhury_2017, Blank_2017, UNKNOWN_1987 Zhang_2015, Kumar_2013, Tong_2009, Levy_2000
270 Soowannayan_2011 RNA-Binding Domain in the Nucleocapsid Protein of Gill-Associated Nidovirus of Penaeid Shrimp Soowannayan, Chumporn; Cowley, Jeff A.; Michalski, Wojtek P.; Walker, Peter J. 2011 2011-08-03 COMM-USE N PMC3153931 21857914.0 10.1371/journal.pone.0022156 4nhy35xn 0.488512 Pong_2011, Stork_2011, Gorbalenya_1988, Kang_2009, Luytjes_1988 Masters_1992, Bhat_2011, Zhang_2015
271 Chatterjee_2007 NMR assignment of the domain 513–651 from the SARS-CoV nonstructural protein nsp3 Chatterjee, Amarnath; Johnson, Margaret A.; Serrano, Pedro; Pedrini, Bill; Wüthrich, Kurt 2007 2007-10-30 PMC N PMC7090708 19636862.0 10.1007/s12104-007-9052-x e36om23p 0.488379 Pong_2011, Gorbalenya_1988, Luytjes_1988, Gomis-Rüth_2003 Serrano_2008, Kumar_2007
272 Wan_C_2013 Epitope Mapping of M36, a Human Antibody Domain with Potent and Broad HIV-1 Inhibitory Activity Wan, Chao; Sun, Jianping; Chen, Weizao; Yuan, Xiaohui; Chong, Huihui; Prabakaran, Ponraj; Dimitrov, Dimiter S.; He, Yuxian 2013 2013-06-11 COMM-USE N PMC3679054 23776690.0 10.1371/journal.pone.0066638 zvxvoygo 0.488374 Ivarsson_2012, Naito_2007, UNKNOWN_1987, Yang_2012, Chang_2000 Zhu_X_2015, Wang_2013
273 Moore_1997 Identification of amino acids involved in a serotype and neutralization specific epitope with in the s1 subunit of avian infectious bronchitis virus Moore, K. M.; Jackwood, M. W.; Hilt, D. A. 1997 1997-04-06 PMC N PMC7087143 9672590.0 10.1007/s007050050239 ikco4h5k 0.487432 Luytjes_1988, Yamada_2000, Wu_G_2005, Abraham_1990 Hua_R_2013
274 Uslupehlivan_2020 Glycoinformatics approach for identifying target positions to inhibit initial binding of SARS-CoV-2 S1 protein to the host cell Muhammet Uslupehlivan; Ecem Sener 2020 2020-03-25 BioRxiv Y 10.1101/2020.03.25.007898 x8jgcqts 0.487345 Ivarsson_2012, Polverino_2017, Callison_1999, Wu_G_2005, Volmer_2010 Zhang_2009, Guillén_2009, Vigerust_2011, Voß_D_2009
275 Zhang_2015 Membrane-Active Sequences within gp41 Membrane Proximal External Region (MPER) Modulate MPER-Containing Peptidyl Fusion Inhibitor Activity and the Biosynthesis of HIV-1 Structural Proteins Zhang, Si Min; Jejcic, Alenka; Tam, James P.; Vahlne, Anders 2015 2015-07-31 COMM-USE N PMC4521866 26230322.0 10.1371/journal.pone.0134851 gccnvh0z 0.487143 UNKNOWN_1987, Chang_2000, UNKNOWN_1993, Pong_2011, Gnirß_2014 Faaberg_1996, Peisajovich_2000, Voß_D_2009
276 Gupta_2015 NMR and MD Studies Reveal That the Isolated Dengue NS3 Protease Is an Intrinsically Disordered Chymotrypsin Fold Which Absolutely Requests NS2B for Correct Folding and Functional Dynamics Gupta, Garvita; Lim, Liangzhong; Song, Jianxing 2015 2015-08-10 COMM-USE N PMC4530887 26258523.0 10.1371/journal.pone.0134823 bbeznd3r 0.487133 Pong_2011, Gomis-Rüth_2003, Ivarsson_2012, Stork_2011, Volmer_2010 Someya_2008, Popescu_2011
277 Wang_2009 APOBEC3G cytidine deaminase association with coronavirus nucleocapsid protein Wang, Shui-Mei; Wang, Chin-Tien 2009 2009-05-25 PMC N PMC7103413 19345973.0 10.1016/j.virol.2009.03.010 krcu3hfa 0.487117 Tallmadge_2008, Pong_2011, Meyerson_2017, Narayanan_2003, Rice_1992 Yu_L_2017
278 Yan_L_2018 Crystal structure of the post-fusion core of the Human coronavirus 229E spike protein at 1.86 Å resolution Yan, Lei; Meng, Bing; Xiang, Jiangchao; Wilson, Ian A.; Yang, Bei 2018 2018-09-03 COMM-USE N PMC6130466 30198895.0 10.1107/s2059798318008318 u7a6javp 0.486780 Volmer_2010, Gomis-Rüth_2003, UNKNOWN_1987, Pong_2011, den_Boon_2010 Liu_C_2006, Koellhoffer_2012
279 Guo_H_2007 Computational studies for the structure and function of mRPE65 Guo, Hao; Zheng, Chong; Gaillard, Elizabeth R. 2007 2007-03-21 PMC N PMC7094118 17123547.0 10.1016/j.jtbi.2006.10.002 mfm96d2q 0.486322 Ivarsson_2012, Qi_Z_2018, Chang_2011, Kirillova_2009, Liu_Z_2008 Myllykoski_2017, Buller_2012, Someya_2008, RAMAKRISHNA_2015
280 Das_J_2017 Chemical property based sequence characterization of PpcA and its homolog proteins PpcB-E: A mathematical approach Das, Jayanta Kumar; Pal Choudhury, Pabitra 2017 2017-03-31 COMM-USE N PMC5376323 28362850.0 10.1371/journal.pone.0175031 2kpxhzbe 0.485808 Qi_Z_2018, Chang_2011, Lee_C_2017, Baranov_2009, Callison_1999 Someya_2008
281 Yan_R_2020 Structural basis for the recognition of the 2019-nCoV by human ACE2 Renhong Yan; Yuanyuan Zhang; Yingying Guo; Lu Xia; Qiang Zhou 2020 2020-02-20 BioRxiv Y 10.1101/2020.02.19.956946 elo7kfun 0.484945 UNKNOWN_1987, Volmer_2010, Ivarsson_2012, Chang_2000, Callison_1999 Guillén_2009, Zhang_2009, Yan_R_2020, Wei_P_2006
282 Hsu_H_2011 In silico investigations of possible routes of assembly of ORF 3a from SARS-CoV Hsu, Hao-Jen; Fischer, Wolfgang B. 2011 2011-05-04 PMC N PMC7087964 21541740.0 10.1007/s00894-011-1092-6 vdqq0j6l 0.484681 UNKNOWN_1987, Callison_1999, Ivarsson_2012, UNKNOWN_1993, Lee_C_2017 Voß_D_2009, Guillén_2008, Chen_2009, RAMAKRISHNA_2015
283 Yan_R_2020 Structural basis for the recognition of SARS-CoV-2 by full-length human ACE2 Yan, Renhong; Zhang, Yuanyuan; Li, Yaning; Xia, Lu; Guo, Yingying; Zhou, Qiang 2020 2020-03-27 None Y PMC7164635 32132184.0 10.1126/science.abb2762 g8iz65wm 0.483930 UNKNOWN_1987, Gomis-Rüth_2003, Yang_2010, Ivarsson_2012, Smith_2003 Guillén_2009, Wang_2020, Joyce_2020, Zhang_2009
284 Fernando_2008 Selective Recognition of a DNA G-Quadruplex by an Engineered Antibody Fernando, Himesh; Rodriguez, Raphaël; Balasubramanian, Shankar 2008 2008-09-09 PMC N PMC2746966 18702511.0 10.1021/bi800983u 5figm2h5 0.483914 Tosoni_2015, Krause_1987, Gorbalenya_1988, Morikawa_1992 Masante_2015, Nowak_1984
285 Gaudin_1992 Rabies virus glycoprotein is a trimer Gaudin, Yves; Ruigrok, Rob W.H.; Tuffereau, Christine; Knossow, Marcel; Flamand, Anne 1992 1992-04-30 PMC N PMC7131270 1546457.0 10.1016/0042-6822(92)90465-2 78empsdp 0.483173 Volmer_2010, UNKNOWN_1987, Gomis-Rüth_2003, Maeda_2001, Narayanan_2003 Effantin_2016, Voß_D_2009, Zhang_2015
286 Zhang_2005 Putative structure and function of ORF3 in SARS coronavirus Zhang, Xue Wu; Yap, Yee Leng 2005 2005-02-28 PMC N PMC7113666 10.1016/j.theochem.2004.10.073 fzkxvr2e 0.481391 Trobaugh_2017, Liu_Z_2008, Naito_2007, Rice_1992 Nelson_2005, Kumar_2007, Bartlam_2005
287 Han_Y_2020 Computational Design of ACE2-Based Peptide Inhibitors of SARS-CoV-2 Han, Yanxiao; Král, Petr 2020 2020-04-14 PMC Y PMC7163933 32286790.0 10.1021/acsnano.0c02857 f9qcabcx 0.480927 Ivarsson_2012, Naito_2007, Smith_2003, Chan_2016, UNKNOWN_1987
288 Zeng_2020 Predictions for the binding domain and potential new drug targets of 2019-nCoV Zehua Zeng; Zhi Luo; Hongwu Du 2020 2020-03-02 BioRxiv Y 10.1101/2020.02.26.961938 fvig79k3 0.480927 Volmer_2010, UNKNOWN_1987, Naito_2007, Callison_1999, Trobaugh_2017 Wang_2013, Li_Y_2020, Zhu_X_2015, Rut_W_2020
289 Zhang_2009 The functional motif of SARS-CoV S protein involved in the interaction with ACE2 Zhang, Yi; Wang, Wei; Gao, Jin-rong; Ye, Li; Fang, Xiao-nan; Zeng, Ying-chun; Wu, Zheng-hui; She, Ying-long; Ye, Lin-bai 2009 2009-09-16 PMC N PMC7090955 10.1007/s12250-007-0054-8 gfiqjgxg 0.480695 UNKNOWN_1987, Volmer_2010, UNKNOWN_1993, Chang_2000, Kang_2009 Guillén_2009, Chen_2009, Voß_D_2009, van_der_Linden_2014
290 Hsu_Y_2013 Detection of Severe Acute Respiratory Syndrome (SARS) Coronavirus Nucleocapsid Protein Using AlGaN/GaN High Electron Mobility Transistors Hsu, You-Ren; Lee, Geng-Yen; Chyi, Jen-Inn; Chang, Chung-ke; Huang, Chih-Cheng; Hsu, Chen-Pin; Huang, Tai-huang; Ren, Fan; Wang, Yu-Lin 2013 2013-03-15 PMC N PMC7095771 10.1149/05006.0239ecst mmmwi8de 0.480615 Stork_2011, Pong_2011, Masante_2015, Volmer_2010 Graziano_2006, Lin_C_2005, Guillon_2008, Kao_R_2004
291 Yuan_2020 A highly conserved cryptic epitope in the receptor-binding domains of SARS-CoV-2 and SARS-CoV Yuan, Meng; Wu, Nicholas C.; Zhu, Xueyong; Lee, Chang-Chun D.; So, Ray T. Y.; Lv, Huibin; Mok, Chris K. P.; Wilson, Ian A. 2020 2020-04-03 None Y PMC7164391 32245784.0 10.1126/science.abb7269 pkxc2219 0.479851 Volmer_2010, UNKNOWN_1987, Pong_2011, Gomis-Rüth_2003, Hu_W_2013
292 Abad_2009 Membrane topology of gp41 and amyloid precursor protein: Interfering transmembrane interactions as potential targets for HIV and Alzheimer treatment Abad, Concepción; Martínez-Gil, Luis; Tamborero, Silvia; Mingarro, Ismael 2009 2009-10-31 PMC N PMC7094694 19619504.0 10.1016/j.bbamem.2009.07.008 z4zt5873 0.478864 Ivarsson_2012, UNKNOWN_1987, Cosson_2013, Chang_2000, UNKNOWN_1993 Voß_D_2009, Chen_2009, Guillén_2009
293 Wang_2018 Discovery of Hydrocarbon-Stapled Short α-Helical Peptides as Promising Middle East Respiratory Syndrome Coronavirus (MERS-CoV) Fusion Inhibitors Wang, Chao; Xia, Shuai; Zhang, Peiyu; Zhang, Tianhong; Wang, Weicong; Tian, Yangli; Meng, Guangpeng; Jiang, Shibo; Liu, Keliang 2018 2018-02-14 PMC N PMC7075646 29442512.0 10.1021/acs.jmedchem.7b01732 f6k6iqge 0.478490 Ivarsson_2012, Gomis-Rüth_2003, Pong_2011, UNKNOWN_1987, Chang_2000 Wang_2018, Harrison_2011, Peisajovich_2000
294 Parsons_2019 Glycosylation of the viral attachment protein of avian coronavirus is essential for host cell and receptor binding Parsons, Lisa M.; Bouwman, Kim M.; Azurmendi, Hugo; de Vries, Robert P.; Cipollo, John F.; Verheije, Monique H. 2019 2019-03-22 PMC N PMC6514631 30902814.0 10.1074/jbc.ra119.007532 u0amf1oh 0.476878 Volmer_2010, Yang_2012, UNKNOWN_1987, Callison_1999, Pong_2011 Voß_D_2009, Vigerust_2011, Niemann_1982
295 Yin_H_2006 Structure of the parainfluenza virus 5 F protein in its metastable, prefusion conformation Yin, Hsien-Sheng; Wen, Xiaolin; Paterson, Reay G.; Lamb, Robert A.; Jardetzky, Theodore S. 2006 2006-01-01 PMC N PMC7095149 16397490.0 10.1038/nature04322 flmeis3x 0.476400 Gomis-Rüth_2003, UNKNOWN_1987, Volmer_2010, Pong_2011, Chang_2000 Koellhoffer_2012
296 Sadilkova_2008 Single-step affinity purification of recombinant proteins using a self-excising module from Neisseria meningitidis FrpC Sadilkova, Lenka; Osicka, Radim; Sulc, Miroslav; Linhartova, Irena; Novak, Petr; Sebo, Peter 2008 2008-10-01 PMC N PMC2548358 18662906.0 10.1110/ps.035733.108 ht8e5jom 0.476365 UNKNOWN_1987, Ivarsson_2012, UNKNOWN_1993, Kuo_D_2011, Chang_2000 Eshaghi_2005, Piñón_1997
297 Antanasijevic_2020 Identification of a pH sensor in Influenza hemagglutinin using X-ray crystallography Antanasijevic, Aleksandar; Durst, Matthew A.; Lavie, Arnon; Caffrey, Michael 2020 2020-01-01 PMC N PMC7111647 31689502.0 10.1016/j.jsb.2019.107412 rdd99ct5 0.474411 Ivarsson_2012, Volmer_2010, Smith_2003, UNKNOWN_1987 Someya_2008
298 Zhang_2018 Structural Definition of a Unique Neutralization Epitope on the Receptor-Binding Domain of MERS-CoV Spike Glycoprotein Zhang, Senyan; Zhou, Panpan; Wang, Pengfei; Li, Yangyang; Jiang, Liwei; Jia, Wenxu; Wang, Han; Fan, Angela; Wang, Dongli; Shi, Xuanling; Fang, Xianyang; Hammel, Michal; Wang, Shuying; Wang, Xinquan; Zhang, Linqi 2018 2018-07-10 None N PMC7104183 29996104.0 10.1016/j.celrep.2018.06.041 mb1vzj0r 0.474411 Ivarsson_2012, Smith_2003, UNKNOWN_1987, Pong_2011, Chang_2000 Zhou_2019, Chen_2017, Elshabrawy_2012
299 Bissonnette_2009 Functional Analysis of the Transmembrane Domain in Paramyxovirus F Protein-Mediated Membrane Fusion Bissonnette, Mei Lin Z.; Donald, Jason E.; DeGrado, William F.; Jardetzky, Theodore S.; Lamb, Robert A. 2009 2009-02-13 None N PMC2750892 19121325.0 10.1016/j.jmb.2008.12.029 7g8xzc2n 0.473201 UNKNOWN_1987, Chang_2000, Gomis-Rüth_2003, UNKNOWN_1993, Volmer_2010 Peisajovich_2000, Voß_D_2009
300 Mishra_2019 Characterization of G-Quadruplex Motifs in espB, espK, and cyp51 Genes of Mycobacterium tuberculosis as Potential Drug Targets Mishra, Subodh Kumar; Shankar, Uma; Jain, Neha; Sikri, Kriti; Tyagi, Jaya Sivaswami; Sharma, Tarun Kumar; Mergny, Jean-Louis; Kumar, Amit 2019 2019-04-30 None N PMC6531831 31128421.0 10.1016/j.omtn.2019.04.022 qhkwn1on 0.471921 Trobaugh_2017, Haasnoot_2010, Ivarsson_2012, Berkhout_2006, Volmer_2010 Michalska_2018, Deng_2019, Someya_2008
301 Park_2013 Accurate Structure Prediction of Peptide-MHC Complexes for Identifying Highly Immunogenic Antigens Park, Min-Sun; Park, Sung Yong; Miller, Keith R.; Collins, Edward J.; Lee, Ha Youn 2013 2013-11-01 PMC N PMC3686981 23688437.0 10.1016/j.molimm.2013.04.011 1v2wcxck 0.471644 Volmer_2010, Ivarsson_2012, Qi_Z_2018, Chang_2011 Gordon_1991, Céspedes_2014, Yu_M_2000, Villard_2007
302 Esposito_2005 Gateway cloning is compatible with protein secretion from Pichia pastoris Esposito, Dominic; Gillette, William K.; Miller, David A.; Taylor, Troy E.; Frank, Peter H.; Hu, Renqui; Bekisz, Joseph; Hernandez, Jessica; Cregg, James M.; Zoon, Kathryn C.; Hartley, James L. 2005 2005-04-30 PMC N PMC7130006 15766886.0 10.1016/j.pep.2004.12.006 ioxkqv31 0.471398 UNKNOWN_1993, UNKNOWN_1987, Vennema_1991, Nagesha_2001 Loa_C_2004, Zhang_2010, Eshaghi_2005, Piñón_1997
303 Badtke_2006 Combining genetic and biochemical approaches to identify functional molecular contact points Badtke, Matthew P.; Cao, Feng; Tavis, John E. 2006 2006-08-10 PMC N PMC1592461 17033698.0 10.1251/bpo121 yagdt1a2 0.469824 Trobaugh_2017, Rice_1992, Berkhout_2006, Haasnoot_2010 Gaggar_2007, van_der_Linden_2014, Zhang_2015, Rott_1987
304 Locker_1999 An Unconventional Role for Cytoplasmic Disulfide Bonds in Vaccinia Virus Proteins Locker, Jacomine Krijnse; Griffiths, Gareth 1999 1999-01-25 NONCOMM N PMC2132897 9922453.0 f7eavha1 0.468520 Gomis-Rüth_2003, Volmer_2010, Narayanan_2003, Diaz_2011, den_Boon_2010 Zhang_2015, Gordon_1991, Deng_2019
305 Wrapp_2019 The 3.1-Angstrom Cryo-electron Microscopy Structure of the Porcine Epidemic Diarrhea Virus Spike Protein in the Prefusion Conformation Wrapp, Daniel; McLellan, Jason S. 2019 2019-11-13 COMM-USE N PMC6854500 31534041.0 10.1128/jvi.00923-19 acru849v 0.468494 Volmer_2010, Rice_1992, den_Boon_2010, Gomis-Rüth_2003, Li_F_2016 Effantin_2016, Walls_2016, Yang_2020
306 Huang_2020 Computational Design of Peptides to Block Binding of the SARS-CoV-2 Spike Protein to Human ACE2 Xiaoqiang Huang; Robin Pearce; Yang Zhang 2020 2020-03-31 BioRxiv Y 10.1101/2020.03.28.013607 imkeghfd 0.468450 Naito_2007, Ivarsson_2012, Qi_Z_2018, Volmer_2010, Chang_2011 Yuan_2004, Veiga_2006, Guillén_2009, Zhang_2020
307 Petit_2005 Genetic analysis of the SARS-coronavirus spike glycoprotein functional domains involved in cell-surface expression and cell-to-cell fusion Petit, Chad M.; Melancon, Jeffrey M.; Chouljenko, Vladimir N.; Colgrove, Robin; Farzan, Michael; Knipe, David M.; Kousoulas, K.G. 2005 2005-10-25 PMC N PMC7111838 16099010.0 10.1016/j.virol.2005.06.046 ae7w9yza 0.468111 UNKNOWN_1987, Chang_2000, UNKNOWN_1993, Yang_2012 Wang_2009, Petit_2007, Chang_2000, Voß_D_2009
308 Walls_2016 Glycan shield and epitope masking of a coronavirus spike protein observed by cryo-electron microscopy Walls, Alexandra C.; Tortorici, M. Alejandra; Frenz, Brandon; Snijder, Joost; Li, Wentao; Rey, Félix A.; DiMaio, Frank; Bosch, Berend-Jan; Veesler, David 2016 2016-09-12 PMC N PMC5515730 27617430.0 10.1038/nsmb.3293 v530u7h0 0.467931 Rice_1992, Volmer_2010, den_Boon_2010, Trobaugh_2017, Gomis-Rüth_2003 Walls_2016, Voß_D_2009, Watanabe_2020
309 De Nicola_2016 Structure and possible function of a G-quadruplex in the long terminal repeat of the proviral HIV-1 genome De Nicola, Beatrice; Lech, Christopher J.; Heddi, Brahim; Regmi, Sagar; Frasson, Ilaria; Perrone, Rosalba; Richter, Sara N.; Phan, Anh Tuân 2016 2016-07-27 COMM-USE N PMC5291261 27298260.0 10.1093/nar/gkw432 b93pvl44 0.467931 Morikawa_1992, Pong_2011, Stork_2011, Lin_X_2015 Masante_2015
310 Shulman-Peleg_2004 Recognition of Functional Sites in Protein Structures Shulman-Peleg, Alexandra; Nussinov, Ruth; Wolfson, Haim J. 2004 2004-06-04 PMC N PMC7126412 15147845.0 10.1016/j.jmb.2004.04.012 66qoykl1 0.467124 Chang_2011, Qi_Z_2018, Polverino_2017, Liu_Z_2008 Kuhn_2006, Myllykoski_2017, Ziółkowska_2006
311 Kingsley_2016 Ranking Protein-Protein Docking Results using Steered Molecular Dynamics and Potential of Mean Force Calculations Kingsley, Laura J.; Esquivel-Rodríguez, Juan; Yang, Ying; Kihara, Daisuke; Lill, Markus A. 2016 2016-05-27 PMC N PMC5015890 27232548.0 10.1002/jcc.24412 04t18oqp 0.466692 Saw_A_2019, Qi_Z_2018, Chang_2011, Dai_Q_2012 Wang_2013, RAMAKRISHNA_2015, Zhang_2018, Plewczynski_2007
312 Chen_2009 Synthesis in Escherichia coli cells and characterization of the active exoribonuclease of severe acute respiratory syndrome coronavirus Chen, P.; Hu, T.; Jiang, M.; Guo, D. 2009 2009-06-23 PMC N PMC7089200 10.1134/s0026893309030091 0b1c7mtf 0.466688 Pong_2011, Stork_2011, Gorbalenya_1988, Hou_L_2014 Eshaghi_2005, Piñón_1997
313 Kalita_2015 Genotype-specific differences in structural features of hepatitis C virus (HCV) p7 membrane protein Kalita, Monoj Mon; Griffin, Stephen; Chou, James J.; Fischer, Wolfgang B. 2015 2015-06-30 PMC N PMC7094707 25772504.0 10.1016/j.bbamem.2015.03.006 09csacgb 0.466172 Callison_1999, UNKNOWN_1987, Diaz_2011, Gomis-Rüth_2003, UNKNOWN_1993 Popescu_2011, Wang_2013, Haqshenas_2007
314 Gong_2016 Structural Insights into the Niemann-Pick C1 (NPC1)-Mediated Cholesterol Transfer and Ebola Infection Gong, Xin; Qian, Hongwu; Zhou, Xinhui; Wu, Jianping; Wan, Tao; Cao, Pingping; Huang, Weiyun; Zhao, Xin; Wang, Xudong; Wang, Peiyi; Shi, Yi; Gao, George F.; Zhou, Qiang; Yan, Nieng 2016 2016-06-02 None N PMC7111323 27238017.0 10.1016/j.cell.2016.05.022 h3lvg15d 0.466025 Greene_2012, Cosson_2013, UNKNOWN_1987, UNKNOWN_1995, Wodrich_2010 Wang_2016
315 Hua_C_2019 Characterization by high-resolution crystal structure analysis of a triple-helix region of human collagen type III with potent cell adhesion activity Hua, Chen; Zhu, Yun; Xu, Wei; Ye, Sheng; Zhang, Rongguang; Lu, Lu; Jiang, Shibo 2019 2019-01-22 PMC N PMC7092849 30545625.0 10.1016/j.bbrc.2018.12.018 l58f9hix 0.465753 Ivarsson_2012, UNKNOWN_1987, Yang_2012, Staple_2005, Gomis-Rüth_2003 Someya_2008, Kanitz_2019, Ziółkowska_2006
316 Kang_2020 Crystal structure of SARS-CoV-2 nucleocapsid protein RNA binding domain reveals potential unique drug targeting sites Sisi Kang; Mei Yang; Zhongsi Hong; Liping Zhang; Zhaoxia Huang; Xiaoxue Chen; Suhua He; Ziliang Zhou; Zhechong Zhou; Qiuyue Chen; Yan Yan; Changsheng Zhang; Hong Shan; Shoudeng Chen 2020 2020-03-07 BioRxiv Y 10.1101/2020.03.06.977876 r88hpbxp 0.465513 Pong_2011, Rice_1992, Volmer_2010, Kang_2009, Meyerson_2017 Elshabrawy_2012, Du_L_2007
317 Luo_Z_1998 Roles in Cell-to-Cell Fusion of Two Conserved Hydrophobic Regions in the Murine Coronavirus Spike Protein Luo, Zongli; Weiss, Susan R. 1998 1998-05-10 PMC N PMC7130564 9601516.0 10.1006/viro.1998.9121 b36g09r0 0.465404 UNKNOWN_1987, Volmer_2010, Chang_2000, UNKNOWN_1993, Yang_2012 Peisajovich_2000, Chang_2000
318 Wang_2018 De Novo Design of α-Helical Lipopeptides Targeting Viral Fusion Proteins: A Promising Strategy for Relatively Broad-Spectrum Antiviral Drug Discovery Wang, Chao; Zhao, Lei; Xia, Shuai; Zhang, Tianhong; Cao, Ruiyuan; Liang, Guodong; Li, Yue; Meng, Guangpeng; Wang, Weicong; Shi, Weiguo; Zhong, Wu; Jiang, Shibo; Liu, Keliang 2018 2018-09-07 None N PMC7075651 30192544.0 10.1021/acs.jmedchem.8b00890 26h0z309 0.464623 Rice_1992, Pong_2011, den_Boon_2010, Volmer_2010, Stork_2011 Zhu_X_2015, Harrison_2011, Wang_2018, Lee_C_2019
319 Gulzar_2020 Bioinformatics Study on Structural Protein of Severe Acute Respiratory Syndrome Coronavirus 2 (Sars-Cov-2) For Better Understanding the Vaccine Development Sumaira Gulzar; Saqib Hussain 2020 2020-04-21 BioRxiv Y 10.1101/2020.04.21.053199 ien7z5gd 0.464264 UNKNOWN_1987, Volmer_2010, Pong_2011, Gorbalenya_1988, Chang_2000
320 Hänel_2005 Solution structure of the X4 protein coded by the SARS related coronavirus reveals an immunoglobulin like fold and suggests a binding activity to integrin I domains Hänel, Karen; Stangler, Thomas; Stoldt, Matthias; Willbold, Dieter 2005 2005-11-23 PMC N PMC7089389 16328780.0 10.1007/s11373-005-9043-9 4dbksw3l 0.463877 Ivarsson_2012, Gorbalenya_1988, Volmer_2010, UNKNOWN_1987, Luytjes_1988 Tsai_2010, Voß_D_2009, Kumar_2007
321 Zhu_J_2004 Following the rule: formation of the 6-helix bundle of the fusion core from severe acute respiratory syndrome coronavirus spike protein and identification of potent peptide inhibitors Zhu, Jieqing; Xiao, Gengfu; Xu, Yanhui; Yuan, Fang; Zheng, Congyi; Liu, Yueyong; Yan, Huimin; Cole, David K; Bell, John I; Rao, Zihe; Tien, Po; Gao, George F 2004 2004-06-18 PMC N PMC7111185 15158473.0 10.1016/j.bbrc.2004.04.141 16upcncw 0.463354 Tallmadge_2008, Pong_2011, Ryu_W_2017, Meyerson_2017, Crowe_2014 Guillén_2009, Veiga_2006, Liu_S_2004
322 Pandey_2016 Current strategies for protein production and purification enabling membrane protein structural biology Pandey, Aditya; Shin, Kyungsoo; Patterson, Robin E.; Liu, Xiang-Qin; Rainey, Jan K. 2016 2016-12-01 PMC N PMC5752365 27010607.0 10.1139/bcb-2015-0143 9k2z7xri 0.463196 Volmer_2010, Liu_Z_2008, Ivarsson_2012, Tessier_2019, Zúñiga_2009 UNKNOWN_1989, Eshaghi_2005, Singleton_2018, Chen_2009
323 Ma_H_2008 Expression and membrane integration of SARS-CoV M protein Ma, Hsin-Chieh; Fang, Chiu-Ping; Hsieh, Yi-Ching; Chen, Shih-Chi; Li, Hui-Chun; Lo, Shih-Yen 2008 2008-04-09 PMC N PMC7088832 18398701.0 10.1007/s11373-008-9235-1 copxoyqu 0.462638 UNKNOWN_1987, UNKNOWN_1993, Morikawa_1992, UNKNOWN_1993, Chang_2000 Chen_2009, Voß_D_2009, Wang_2009
324 Nguyen_2020 Elucidating the differences in the molecular mechanism of receptor binding between 2019-nCoV and the SARS-CoV viruses using computational tools Toan The Nguyen; Hien Thi Thu Lai; Ly Hai Nguyen; Duc Nguyen-Manh; Agata The Kranjc Pietrucci 2020 2020-04-21 BioRxiv Y 10.1101/2020.04.21.053009 xucpbsbm 0.462387 Volmer_2010, Ivarsson_2012, Naito_2007, UNKNOWN_1987, Trobaugh_2017
325 Hsieh_2008 Interactions between M protein and other structural proteins of severe, acute respiratory syndrome-associated coronavirus Hsieh, Yi-Ching; Li, Hui-Chun; Chen, Shih-Chi; Lo, Shih-Yen 2008 2008-09-16 PMC N PMC7089546 18792806.0 10.1007/s11373-008-9278-3 qicchvhf 0.462122 Volmer_2010, Álvarez_2010, Li_C_2013, Shi_S_2000 Chen_2009, Voß_D_2009, Álvarez_2010, Zhang_2015
326 Schneggenburger_2010 Peptide model helices in lipid membranes: insertion, positioning, and lipid response on aggregation studied by X-ray scattering Schneggenburger, Philipp E.; Beerlink, André; Weinhausen, Britta; Salditt, Tim; Diederichsen, Ulf 2010 2010-12-23 None N PMC3070074 21181143.0 10.1007/s00249-010-0645-4 finpjfuz 0.461493 Polverino_2017, Qi_Z_2018, UNKNOWN_1993, Khattari_2006, Ivarsson_2012 Kosol_2010, Chang_2008, UNKNOWN_1989, Shen_2013
327 Villullas_2007 Mutational analysis of human CEACAM1: the potential of receptor polymorphism in increasing host susceptibility to bacterial infection Villullas, Silvia; Hill, Darryl J; Sessions, Richard B; Rea, Jon; Virji, Mumtaz 2007 2007-02-01 PMC N PMC1859983 16953805.0 10.1111/j.1462-5822.2006.00789.x 9zmyojbu 0.461486 Volmer_2010, Ivarsson_2012, Callison_1999, UNKNOWN_1987, Yang_2012 Callaghan_2007, Voges_2010, Bos_M_1999
328 Wu_G_2004 Reasoning of spike glycoproteins being more vulnerable to mutations among 158 coronavirus proteins from different species Wu, Guang; Yan, Shaomin 2004 2004-12-09 PMC N PMC7088192 15592899.0 10.1007/s00894-004-0210-0 1gsy43a0 0.461476 Volmer_2010, Callison_1999, UNKNOWN_1987, Wu_G_2005, Chang_2000 Shajahan_2020, Jeong_2005, Li_S_2016, Bank-Wolf_2014
329 Lin_Z_2009 Identification of Viral Peptide Fragments for Vaccine Development Lin, Zhanglin; Li, Shuang; Chen, Yong 2009 2009-01-01 PMC N PMC7120913 19378127.0 10.1007/978-1-59745-559-6_18 zlvv6kaw 0.461453 Rice_1992, Stork_2011, Pong_2011, Volmer_2010, Armesto_2007 van_der_Linden_2014, Brun_2014, Gordon_1991, Robinson_2013
330 Zhu_S_2019 Divergent Peptide Presentations of HLA-A(*)30 Alleles Revealed by Structures With Pathogen Peptides Zhu, Shiyan; Liu, Kefang; Chai, Yan; Wu, Yanan; Lu, Dan; Xiao, Wenling; Cheng, Hao; Zhao, Yingze; Ding, Chunming; Lyu, Jianxin; Lou, Yongliang; Gao, George F.; Liu, William J. 2019 2019-07-23 COMM-USE N PMC6664060 31396224.0 10.3389/fimmu.2019.01709 va15szxu 0.460454 Callison_1999, Volmer_2010, Naito_2007, Ivarsson_2012, Zhou_2007 Wang_2012, Ngandu_2009
331 Liu_L_2012 3.8 Protein and Nucleic Acid Folding: Domain Swapping in Proteins Liu, L.; Gronenborn, A.M. 2012 2012-12-31 PMC N PMC7152442 10.1016/b978-0-12-374920-8.00309-x n4nzocp5 0.460133 Ivarsson_2012, Dubois_2016, Cosson_2013, UNKNOWN_1987 Mascarenhas_2017, Tong_2009, Myllykoski_2017
332 Apellániz_2014 The three lives of viral fusion peptides Apellániz, Beatriz; Huarte, Nerea; Largo, Eneko; Nieva, José L. 2014 2014-07-31 None N PMC4061400 24704587.0 10.1016/j.chemphyslip.2014.03.003 08d6ed68 0.459574 Cosson_2013, Ivarsson_2012, UNKNOWN_1987, Modis_2013, Weissenhorn_2013 Voß_D_2009, Guillén_2008, Peisajovich_2000
333 Zhang_2007 Computational characterization and design of SARS coronavirus receptor recognition and antibody neutralization Zhang, Yuan; Zheng, Nan; Zhong, Yang 2007 2007-04-30 PMC N PMC7106420 17374510.0 10.1016/j.compbiolchem.2007.02.005 maa8c4a4 0.459278 Naito_2007, Ivarsson_2012, Liu_Z_2008, Chang_2011 Lee_H_2013, Wei_P_2006, Zhang_2007, van_der_Linden_2014
334 Kerry_2011 A Transient Homotypic Interaction Model for the Influenza A Virus NS1 Protein Effector Domain Kerry, Philip S.; Ayllon, Juan; Taylor, Margaret A.; Hass, Claudia; Lewis, Andrew; García-Sastre, Adolfo; Randall, Richard E.; Hale, Benjamin G.; Russell, Rupert J. 2011 2011-03-28 COMM-USE N PMC3065461 21464929.0 10.1371/journal.pone.0017946 mcuk184k 0.457209 Ivarsson_2012, Smith_2003, Gomis-Rüth_2003, Volmer_2010, Pong_2011
335 Mrozowich_2020 Nanoscale Structure Determination of Murray Valley Encephalitis and Powassan Virus Non-Coding RNAs Mrozowich, Tyler; Henrickson, Amy; Demeler, Borries; Patel, Trushar R 2020 2020-02-08 COMM-USE N PMC7077200 32046304.0 10.3390/v12020190 gzjwh42b 0.455836 Rice_1992, den_Boon_2010, Liu_Y_2009, Chang_2011, Wu_B_2009 Sun_D_2016, Case_2017
336 Russell_2006 The structural basis of paramyxovirus invasion Russell, Charles J.; Luque, Laura E. 2006 2006-06-30 PMC N PMC7119026 16678421.0 10.1016/j.tim.2006.04.004 2mzptxie 0.454107 Gomis-Rüth_2003, Volmer_2010, den_Boon_2010, Narayanan_2003 Yin_H_2006
337 Tang_2005 Three-dimensional structure of the bacteriophage P22 tail machine Tang, Liang; Marion, William R; Cingolani, Gino; Prevelige, Peter E; Johnson, John E 2005 2005-06-02 PMC N PMC1150889 15933718.0 10.1038/sj.emboj.7600695 0x1jhya6 0.454107 den_Boon_2010, Dubois_2016, Rice_1992, Wu_B_2009 Olia_2008
338 Kielian_2006 Virus membrane-fusion proteins: more than one way to make a hairpin Kielian, Margaret; Rey, Félix A. 2006 2006-01-01 PMC N PMC7097298 16357862.0 10.1038/nrmicro1326 eo0vjcmk 0.453992 Ivarsson_2012, Trobaugh_2017, Volmer_2010, Zúñiga_2009 Li_Y_2014, Voß_D_2009, Modis_2013
339 Khattari_2006 Viral ion channel proteins in model membranes: a comparative study by X-ray reflectivity Khattari, Z.; Arbely, E.; Arkin, I. T.; Salditt, T. 2006 2006-09-21 PMC N PMC7080166 17019591.0 10.1007/s00249-006-0099-x yqnbybh0 0.452305 Ge_M_2011, Mall_2002, Ivarsson_2012, Cosson_2013 Chang_2008, Khattari_2006
340 He_Y_2006 A single amino acid substitution (R441A) in the receptor-binding domain of SARS coronavirus spike protein disrupts the antigenic structure and binding activity He, Yuxian; Li, Jingjing; Jiang, Shibo 2006 2006-05-26 PMC N PMC7092835 16615996.0 10.1016/j.bbrc.2006.03.139 jaom3p6s 0.451858 Ban_J_2018, Volmer_2010, UNKNOWN_1987, Chang_2000, Pong_2011 Elshabrawy_2012, He_Y_2004, Ng_O_2014
341 Zhu_Y_2020 Design of potent membrane fusion inhibitors against SARS-CoV-2, an emerging coronavirus with high fusogenic activity Yuanmei Zhu; Danwei Yu; Hongxia Yan; Huihui Chong; Yuxian He 2020 2020-03-28 BioRxiv Y 10.1101/2020.03.26.009233 cogk5kig 0.451373 UNKNOWN_1987, Volmer_2010, Ban_J_2018, Kang_2009, Pong_2011 Veiga_2006, Du_L_2007, Haga_2010, Yuan_2004
342 Klaile_2009 The CEACAM1 N-terminal Ig domain mediates cis- and trans-binding and is essential for allosteric rearrangements of CEACAM1 microclusters Klaile, Esther; Vorontsova, Olga; Sigmundsson, Kristmundur; Müller, Mario M.; Singer, Bernhard B.; Öfverstedt, Lars-Göran; Svensson, Stina; Skoglund, Ulf; Öbrink, Björn 2009 2009-11-16 NONCOMM N PMC2779236 19948502.0 10.1083/jcb.200904149 uy2553z7 0.451058 Ivarsson_2012, Cosson_2013, Jonker_2018, Greene_2012 UNKNOWN_1994, Lawson_2012
343 Huang_2016 Putative Receptor Binding Domain of Bat-Derived Coronavirus HKU9 Spike Protein: Evolution of Betacoronavirus Receptor Binding Motifs Huang, Canping; Qi, Jianxun; Lu, Guangwen; Wang, Qihui; Yuan, Yuan; Wu, Ying; Zhang, Yanfang; Yan, Jinghua; Gao, George F. 2016 2016-10-03 PMC N PMC7075523 27696819.0 10.1021/acs.biochem.6b00790 0y0hau9l 0.451034 Volmer_2010, UNKNOWN_1987, Ivarsson_2012, Pong_2011, Gomis-Rüth_2003 Niemeyer_2018, Lau_S_2018
344 Ozorowski_2017 Open and Closed Structures Reveal Allostery and Pliability in the HIV-1 Envelope Spike Ozorowski, Gabriel; Pallesen, Jesper; de Val, Natalia; Lyumkis, Dmitry; Cottrell, Christopher A.; Torres, Jonathan L.; Copps, Jeffrey; Stanfield, Robyn L.; Cupo, Albert; Pugach, Pavel; Moore, John P.; Wilson, Ian A.; Ward, Andrew B. 2017 2017-07-12 PMC N PMC5538736 28700571.0 10.1038/nature23010 e6um3fc8 0.450092 Dey_A_2009, Pong_2011, Zhou_2007, Gomis-Rüth_2003, Volmer_2010 Prabakaran_2007, Sun_D_2016
345 Shi_J_2015 Characterization of the fusion core in zebrafish endogenous retroviral envelope protein Shi, Jian; Zhang, Huaidong; Gong, Rui; Xiao, Gengfu 2015 2015-05-08 PMC N PMC7092836 25804638.0 10.1016/j.bbrc.2015.03.081 5vlcgzrt 0.449794 Volmer_2010, UNKNOWN_1987, UNKNOWN_1993, UNKNOWN_1993, Chang_2000 Gong_2005, Wang_2009, Tzeng_2006
346 Doan_2003 Structure of the Nucleocapsid Protein of Porcine Reproductive and Respiratory Syndrome Virus Doan, Danny N.P; Dokland, Terje 2003 2003-11-30 PMC N 14604534.0 10.1016/j.str.2003.09.018 t6r6adx3 0.449667 Pong_2011, Rice_1992, Gomis-Rüth_2003, Gorbalenya_1988, Ryu_W_2017
347 DiMaio_2016 Chapter Ten Tools for Model Building and Optimization into Near-Atomic Resolution Electron Cryo-Microscopy Density Maps DiMaio, F.; Chiu, W. 2016 2016-12-31 None N PMC5103630 27572730.0 10.1016/bs.mie.2016.06.003 1voq7zxz 0.448766 Bocharov_2018, Qi_Z_2018, Montgomery_2004, Liou_2013 Jonić_2016, Subramaniam_2016, Yadav_2005
348 Antanasijevic_2016 Application of virus-like particles (VLP) to NMR characterization of viral membrane protein interactions Antanasijevic, Aleksandar; Kingsley, Carolyn; Basu, Arnab; Bowlin, Terry L.; Rong, Lijun; Caffrey, Michael 2016 2016-02-26 None N PMC4826305 26921030.0 10.1007/s10858-016-0025-1 zonfottc 0.447885 Volmer_2010, Rice_1992, Stork_2011, den_Boon_2010, Pong_2011 Zhang_2015, Voß_D_2009
349 Skubitz_2008 Synthetic peptides from the N‐domains of CEACAMs activate neutrophils Skubitz, K.M.; Campbell, K.D.; Skubitz, A. P. N. 2008 2008-12-08 PMC N PMC7162001 12005421.0 10.1034/j.1399-3011.2001.00931.x lt9yzs99 0.447885 UNKNOWN_1987, UNKNOWN_1993, Lawson_2012, Ivarsson_2012, Yang_2012
350 Gomis-Rüth_2003 The Matrix Protein VP40 from Ebola Virus Octamerizes into Pore-like Structures with Specific RNA Binding Properties Gomis-Rüth, F.Xavier; Dessen, Andréa; Timmins, Joanna; Bracher, Andreas; Kolesnikowa, Larissa; Becker, Stephan; Klenk, Hans-Dieter; Weissenhorn, Winfried 2003 2003-04-30 PMC N PMC7126486 12679020.0 10.1016/s0969-2126(03)00050-9 eemt5tjs 0.447850 Pong_2011, Narayanan_2003, Stork_2011, Meyerson_2017
351 Satoh_2010 Characterization of T helper (Th)1‐ and Th2‐type immune responses caused by baculovirus‐expressed protein derived from the S2 domain of feline infectious peritonitis virus, and exploration of the Th1 and Th2 epitopes in a mouse model Satoh, Ryoichi; Kobayashi, Hiroshige; Takano, Tomomi; Motokawa, Kenji; Kusuhara, Hajime; Hohdatsu, Tsutomu 2010 2010-11-23 PMC N PMC7168408 21091984.0 10.1111/j.1348-0421.2010.00275.x w18ptl0n 0.446526 Volmer_2010, Ban_J_2018, UNKNOWN_1987, Compton_2014, Kolls_2012
352 Zeng_2004 Characterization of humoral responses in mice immunized with plasmid DNAs encoding SARS-CoV spike gene fragments Zeng, Fanya; Chow, Ken Yan Ching; Hon, Chung Chau; Law, Ka Man; Yip, Chi Wai; Chan, Kwok Hung; Peiris, Joseph S.Malik; Leung, Frederick Chi Ching 2004 2004-03-19 PMC N PMC7111006 14985131.0 10.1016/j.bbrc.2004.01.166 nokybn2a 0.446209 Okda_2017, Callison_1999, Volmer_2010, Rice_1992 Wang_2009, Zhao_2004, Liu_R_2005
353 Khattari_2005 SARS E protein in phospholipid bilayers: an anomalous X-ray reflectivity study Khattari, Z.; Brotons, G.; Arbely, E.; Arkin, I.T.; Metzger, T.H.; Salditt, T. 2005 2005-02-28 PMC N PMC7127356 10.1016/j.physb.2004.11.015 hi8k8wvb 0.445687 Khattari_2006, UNKNOWN_1993, Ge_M_2011, Ruiz-Herrero_2015 Khattari_2006, Khattari_2006, Schneggenburger_2010, D’Errico_2009
354 Ward_2017 The HIV-1 Envelope Glycoprotein Structure: Nailing down a Moving Target Ward, Andrew B.; Wilson, Ian A. 2017 2017-01-01 None N PMC5300090 28133813.0 10.1111/imr.12507 i4ukhnd2 0.444977 Dey_A_2009, Rice_1992, Gomis-Rüth_2003, Pong_2011 Crispin_2018, Prabakaran_2007, Zhu_X_2015
355 Gebauer_1991 Residues involved in the antigenic sites of transmissible gastroenteritis coronavirus S glycoprotein Gebauer, Fátima; Posthumus, Willem P.A.; Correa, Isabel; Sae, Carlos; Smerdou, Cristian; Sanchez, Carlos M.; Lenstra, Johannes A.; Meloen, Rob H.; Enjuanes, Luis 1991 1991-07-31 PMC N PMC7130809 1711257.0 10.1016/0042-6822(91)90135-x qf32xs4m 0.444883 Callison_1999, Yang_2010, UNKNOWN_1987, Luytjes_1988, Yang_2012 Correa_1988, Martín_Alonso_1992
356 Nagae_2018 Biophysical Analyses for Probing Glycan-Protein Interactions Nagae, Masamichi; Yamaguchi, Yoshiki 2018 2018-11-28 PMC N PMC7153041 30484247.0 10.1007/978-981-13-2158-0_7 rzlfxfn7 0.443990 UNKNOWN_2004, Liu_Z_2008, Plewczyński_2008, Sen_D_2018, Bocharov_2018 Raman_2016, Cao_L_2018, Voß_D_2009, Vigerust_2011
357 Wang_2020 Structural and Functional Basis of SARS-CoV-2 Entry by Using Human ACE2 Wang, Qihui; Zhang, Yanfang; Wu, Lili; Niu, Sheng; Song, Chunli; Zhang, Zengyuan; Lu, Guangwen; Qiao, Chengpeng; Hu, Yu; Yuen, Kwok-Yung; Wang, Qisheng; Zhou, Huan; Yan, Jinghua; Qi, Jianxun 2020 2020-04-09 PMC Y 10.1016/j.cell.2020.03.045 6nd9fmz3 0.441832 Volmer_2010, Callison_1999, UNKNOWN_1987, Zeng_2004, Ivarsson_2012 Zheng_2020, Joyce_2020, Yuan_2020, Walls_2020
358 Lin_P_2008 Correlation between dissociation and catalysis of SARS-CoV main protease Lin, Pei-Ying; Chou, Chi-Yuan; Chang, Hui-Chuan; Hsu, Wen-Chi; Chang, Gu-Gang 2008 2008-04-01 PMC N PMC7094404 18275836.0 10.1016/j.abb.2008.01.023 32c8lg9k 0.441579 Smith_2003, UNKNOWN_1987, Yang_2012, Yang_2010, Wu_G_2005 Cheng_2010, Wei_P_2006, Graziano_2006, Tsai_2010
359 D’Annessa_2020 Differential Antibody Recognition by Novel SARS-CoV-2 and SARS-CoV Spike Protein Receptor Binding Domains: Mechanistic Insights and Implications for the Design of Diagnostics and Therapeutics Ilda D’Annessa; Filippo Marchetti; Giorgio Colombo 2020 2020-03-14 BioRxiv Y 10.1101/2020.03.13.990267 c08ptb1o 0.439328 Volmer_2010, Trobaugh_2017, Ivarsson_2012, Haasnoot_2010, Liu_Z_2008 Zheng_2020, Elshabrawy_2012, Giron_2020
360 OuYang_2018 Structural and Functional Properties of Viral Membrane Proteins OuYang, Bo; Dong, Ying; Chou, James J. 2018 2018-06-29 PMC N PMC7122571 10.1007/978-981-13-0532-0_6 pj6pal35 0.438541 Cosson_2013, Weissenhorn_2013, Ivarsson_2012, Hurley_2014 Nieva_2012, Voß_D_2009, Sze_C_2015
361 Lu_W_2005 Synthetic peptides derived from SARS coronavirus S protein with diagnostic and therapeutic potential Lu, Wei; Wu, Xiao-Dong; Shi, Mu De; Yang, Rui Fu; He, You Yu; Bian, Chao; Shi, Tie Liu; Yang, Sheng; Zhu, Xue-Liang; Jiang, Wei-Hong; Li, Yi Xue; Yan, Lin-Chen; Ji, Yong Yong; Lin, Ying; Lin, Guo-Mei; Tian, Lin; Wang, Jin; Wang, Hong Xia; Xie, You Hua; Pei, Gang; Wu, Jia Rui; Sun, Bing 2005 2005-04-11 PMC N PMC7094314 15811330.0 10.1016/j.febslet.2005.02.070 eyr5lo5b 0.438194 Volmer_2010, Naito_2007, Shen_2005, UNKNOWN_1987, Rice_1992 Li_S_2016, Choy_2004, Liu_S_2006, Hwa_K_2008
362 Banerjee_2013 Use of a Small Peptide Fragment as an Inhibitor of Insulin Fibrillation Process: A Study by High and Low Resolution Spectroscopy Banerjee, Victor; Kar, Rajiv K.; Datta, Aritreyee; Parthasarathi, Krupakar; Chatterjee, Subhrangsu; Das, Kali P.; Bhunia, Anirban 2013 2013-08-29 COMM-USE N PMC3756998 24009675.0 10.1371/journal.pone.0072318 auicxks8 0.437520 UNKNOWN_1987, Chan_2016, Ivarsson_2012, Smith_2003, Volmer_2010 Moulaei_2010
363 Metcalfe_2012 Interleukin-2 signalling is modulated by a labile disulfide bond in the CD132 chain of its receptor Metcalfe, Clive; Cresswell, Peter; Barclay, A. Neil 2012 2012-01-23 COMM-USE N PMC3352089 22645657.0 10.1098/rsob.110036 iktlbqpx 0.437164 Hansen_2018, Kim_S_2018, Zhao_2012, Lee_S_2016, Smith_2003 Schwertassek_2007, Ezelle_2016, Gabrilovac_2005, Lee_W_2013
364 Liu_X_2009 Donut-shaped fingerprint in homologous polypeptide relationships—A topological feature related to pathogenic structural changes in conformational disease Liu, Xin; Zhao, Ya-Pu 2009 2009-05-21 PMC N PMC7094133 19248793.0 10.1016/j.jtbi.2009.02.009 twmrilk8 0.435826 Chang_2011, Qi_Z_2018, Ivarsson_2012, Liao_2006, Liu_Z_2008 Zhang_2015, Mönttinen_2019, Kumar_2013
365 ali_M_2014 Computer aided prediction and identification of potential epitopes in the receptor binding domain (RBD) of spike (S) glycoprotein of MERS-CoV ali, Mohammad Tuhin; Morshed, Mohammed Monzur; Gazi, Md. Amran; Musa, Md. Abu; Kibria, Md Golam; Uddin, Md Jashim; Khan, Md. Anik Ashfaq; Hasan, Shihab 2014 2014-08-30 PMC N PMC4166774 25258490.0 10.6026/97320630010533 70xvrfbg 0.433543 Volmer_2010, Callison_1999, Naito_2007, UNKNOWN_1987, Ivarsson_2012 Jiang_2017, Elshabrawy_2012, Chen_2017
366 Liu_M_2006 Amino acids 1 to 422 of the spike protein of SARS associated coronavirus are required for induction of cyclooxygenase-2 Liu, Mo; Gu, Chunfang; Wu, Jianguo; Zhu, Ying 2006 2006-01-01 PMC N PMC7088811 16991002.0 10.1007/s11262-005-0070-4 2d7l26tl 0.433136 Volmer_2010, Kang_2009, Shen_2005, Yang_2010, Luytjes_1988 Wang_2009, Kumar_2007, Du_L_2007, He_R_2003
367 UNKNOWN_1989 Translational diffusion of class II major histocompatibility complex molecules is constrained by their cytoplasmic domains None 1989 1989-12-01 NONCOMM N PMC2115898 2557353.0 ie5ox69g 0.432131 UNKNOWN_1986, UNKNOWN_1993, UNKNOWN_1987, Chang_2000 Nowak_1984, UNKNOWN_1995
368 Leyson_2016 Insights from molecular structure predictions of the infectious bronchitis virus S1 spike glycoprotein Leyson, Christina Lora M.; Jordan, Brian J.; Jackwood, Mark W. 2016 2016-12-31 PMC N PMC7106061 27836775.0 10.1016/j.meegid.2016.11.006 9jhn0b7q 0.431139 Callison_1999, Volmer_2010, Naito_2007, Qi_Z_2018, Chang_2011 Promkuntod_2013, Ren_X_2008, Lachheb_2019, Bickerton_2018
369 Xu_X_2009 Crystal Structure of the C-Terminal Cytoplasmic Domain of Non-Structural Protein 4 from Mouse Hepatitis Virus A59 Xu, Xiaoling; Lou, Zhiyong; Ma, Yanlin; Chen, Xuehui; Yang, Zhangsheng; Tong, Xiaohang; Zhao, Qi; Xu, Yuanyuan; Deng, Hongyu; Bartlam, Mark; Rao, Zihe 2009 2009-07-10 COMM-USE N PMC2703826 19593433.0 10.1371/journal.pone.0006217 1beonuh7 0.431015 UNKNOWN_1987, Gomis-Rüth_2003, UNKNOWN_1993, UNKNOWN_1993, Diaz_2011 Kanjanahaluethai_2007, Voß_D_2009
370 Sundaramoorthy_2018 Structure of the chromatin remodelling enzyme Chd1 bound to a ubiquitinylated nucleosome Ramasubramanian Sundaramoorthy; Amanda L. Hughes; Hassane El-Mkami; David Norman; Tom Owen-Hughes 2018 2018-03-30 BioRxiv N 10.1101/290874 ct2zhauz 0.431001 Blank_2017, Ivarsson_2012, UNKNOWN_1992, Oberbeckmann_2020 Scrima_2004, Sato_2019, Scrima_2006
371 Lupas_2017 The Structure and Topology of α-Helical Coiled Coils Lupas, Andrei N.; Bassler, Jens; Dunin-Horkawicz, Stanislaw 2017 2017-01-19 PMC N PMC7122542 28101860.0 10.1007/978-3-319-49674-0_4 g4mwhg7l 0.430818 Apgar_2008, Staple_2005, Ivarsson_2012, Deng_2008 Apgar_2008, McFarlane_2009
372 Pina_2014 Challenges and opportunities in the purification of recombinant tagged proteins Pina, Ana Sofia; Lowe, Christopher R.; Roque, Ana Cecília A. 2014 2014-04-30 PMC N PMC7125906 24334194.0 10.1016/j.biotechadv.2013.12.001 vlvu75mf 0.429296 Ivarsson_2012, Rice_1992, He_R_2008, Qi_Z_2018 Raran-Kurussi_2016, Sadilkova_2008, Eshaghi_2005
373 Woldring_2015 High-Throughput Ligand Discovery Reveals a Sitewise Gradient of Diversity in Broadly Evolved Hydrophilic Fibronectin Domains Woldring, Daniel R.; Holec, Patrick V.; Zhou, Hong; Hackel, Benjamin J. 2015 2015-09-18 None N PMC4575168 26383268.0 10.1371/journal.pone.0138956 6rt3ty64 0.428981 Chang_2011, Ivarsson_2012, Kinjo_2012, Qi_Z_2018, Naito_2007 Lamberto_2017, Moulaei_2010
374 Lawson_2012 The Transmembrane Domain of CEACAM1-4S Is a Determinant of Anchorage Independent Growth and Tumorigenicity Lawson, Erica L.; Mills, David R.; Brilliant, Kate E.; Hixson, Douglas C. 2012 2012-01-03 COMM-USE N PMC3250453 22235309.0 10.1371/journal.pone.0029606 l22gfc6r 0.428920 Smith_2003, UNKNOWN_1987, Ivarsson_2012, Chang_2000 UNKNOWN_1994, McCuaig_1993
375 Verdiá-Báguena_2013 Analysis of SARS-CoV E protein ion channel activity by tuning the protein and lipid charge Verdiá-Báguena, Carmina; Nieto-Torres, Jose L.; Alcaraz, Antonio; DeDiego, Marta L.; Enjuanes, Luis; Aguilella, Vicente M. 2013 2013-09-30 PMC N PMC3715572 23688394.0 10.1016/j.bbamem.2013.05.008 ei61qlhy 0.427951 UNKNOWN_1987, UNKNOWN_1993, Verdiá-Báguena_2012, Ivarsson_2012, Yang_2012 Guillén_2009, Chen_2009, Voß_D_2009, Guillén_2008
376 Galilee_2018 Multimerization of HIV-1 integrase hinges on conserved SH3-docking platforms Meytal Galilee; Akram Alian 2018 2018-04-16 BioRxiv N 10.1101/301721 4fuxbte0 0.427545 Pong_2011, Ivarsson_2012, Stork_2011, Smith_2003 Zhu_X_2015, Moulaei_2010, van_der_Linden_2014, Cheng_2010
377 Tan_J_2005 pH-dependent Conformational Flexibility of the SARS-CoV Main Proteinase (Mpro) Dimer: Molecular Dynamics Simulations and Multiple X-ray Structure Analyses Tan, Jinzhi; Verschueren, Koen H.G.; Anand, Kanchan; Shen, Jianhua; Yang, Maojun; Xu, Yechun; Rao, Zihe; Bigalke, Janna; Heisen, Burkhard; Mesters, Jeroen R.; Chen, Kaixian; Shen, Xu; Jiang, Hualiang; Hilgenfeld, Rolf 2005 2005-11-18 PMC N PMC7094468 16242152.0 10.1016/j.jmb.2005.09.012 uvuamh0p 0.427439 Chan_2016, Ivarsson_2012, Guo_Y_2013, Pong_2011, Smith_2003 Wei_P_2006, Cheng_2010, Lee_T_2007, Lin_P_2008
378 Kuhn_2006 From the Similarity Analysis of Protein Cavities to the Functional Classification of Protein Families Using Cavbase Kuhn, Daniel; Weskamp, Nils; Schmitt, Stefan; Hüllermeier, Eyke; Klebe, Gerhard 2006 2006-06-16 PMC N PMC7094329 16697007.0 10.1016/j.jmb.2006.04.024 h7leow0q 0.427034 Qi_Z_2018, Ivarsson_2012, Chang_2011, Liu_Z_2008, Kinjo_2012 Mönttinen_2019, Myllykoski_2017, Ziółkowska_2006
379 Liu_Z_2008 Bridging protein local structures and protein functions Liu, Zhi-Ping; Wu, Ling-Yun; Wang, Yong; Zhang, Xiang-Sun; Chen, Luonan 2008 2008-04-18 PMC N PMC7088341 18421562.0 10.1007/s00726-008-0088-8 0oq2n0af 0.425822 Sen_D_2018, Chang_2011, UNKNOWN_2004, Qi_Z_2018 Myllykoski_2017, Bagowski_2010, van_Dijk_2008
380 Vila_2010 Sequential nearest-neighbor effects on computed (13)C(α) chemical shifts Vila, Jorge A.; Serrano, Pedro; Wüthrich, Kurt; Scheraga, Harold A. 2010 2010-07-20 None N PMC2970923 20644980.0 10.1007/s10858-010-9435-7 1t433pfu 0.425714 Liao_2006, Qi_Z_2018, Wu_G_2005, Saw_A_2019, Callison_1999 Lee_G_2012, Cornish_2006
381 Dubois_2012 Astrovirus Structure and Assembly Dubois, Rebecca M.; Dryden, Kelly A.; Yeager, Mark; Tao, Yizhi J. 2012 2012-09-07 PMC N PMC7120587 10.1007/978-1-4614-4735-1_3 czrecnn6 0.425360 Tallmadge_2008, Ryu_W_2017, Rice_1992, den_Boon_2010 Effantin_2016, Walls_2016
382 Ren_B_2016 Structural and functional characterisation of ferret interleukin-2 Ren, Bin; McKinstry, William J.; Pham, Tam; Newman, Janet; Layton, Daniel S.; Bean, Andrew G.; Chen, Zhenjun; Laurie, Karen L.; Borg, Kathryn; Barr, Ian G.; Adams, Timothy E. 2016 2016-02-29 PMC N PMC7102629 26472619.0 10.1016/j.dci.2015.10.007 zxeyjybs 0.425360 Volmer_2010, Ban_J_2018, Ivarsson_2012, Trobaugh_2017, Rice_1992 Rimstad_1995, Li_W_2013, Russell_2018
383 Rabbani_2013 Structural characteristics of thermostable immunogenic outer membrane protein from Salmonella enterica serovar Typhi Rabbani, Gulam; Kaur, Jasmine; Ahmad, Ejaz; Khan, Rizwan Hasan; Jain, S. K. 2013 2013-08-15 PMC N PMC7080034 23949993.0 10.1007/s00253-013-5123-3 c22kb15i 0.423804 Volmer_2010, Antanasijevic_2020, Chan_2016, Guo_Y_2013 Guarino_2005, Eshaghi_2005, Zhang_2015
384 Lomonossoff_1996 Use of macromolecular assemblies as expression systems for peptides and synthetic vaccines Lomonossoff, George P; Johnson, John E 1996 1996-04-30 PMC N 8728650.0 10.1016/s0959-440x(96)80072-8 0jarr7hj 0.423680 Chang_2011, Kirillova_2009, Liu_Z_2008, Qi_Z_2018 Cruz-Reséndiz_2020, Gordon_1991, Doll_2015, Sarkar_2013
385 Chang_2000 Coronavirus-Induced Membrane Fusion Requires the Cysteine-Rich Domain in the Spike Protein Chang, Kevin W.; Sheng, YiWei; Gombold, James L. 2000 2000-03-30 PMC N PMC7131280 10725213.0 10.1006/viro.2000.0219 lg4gk3yl 0.423009 UNKNOWN_1987, UNKNOWN_1993, UNKNOWN_1993, UNKNOWN_1993 UNKNOWN_1987, UNKNOWN_1991, Yang_2012
386 Sadybekov_2020 Breaking the Enigma Code of Angiotensin II Type 2 Receptor Signaling Sadybekov, Anastasiia; Katritch, Vsevolod 2020 2020-04-07 PMC N PMC7154512 10.1016/j.str.2020.03.004 r5nt3oq2 0.422777 Ivarsson_2012, Leung_2012, Martín-Vicente_2017, Berkhout_2006 Deaton_2008, Deaton_2008, Zhang_2020
387 Subramaniam_2016 Resolution advances in cryo-EM enable application to drug discovery Subramaniam, Sriram; Earl, Lesley A.; Falconieri, Veronica; Milne, Jacqueline L. S.; Egelman, Edward H. 2016 2016-12-01 PMC N PMC5154827 27552081.0 10.1016/j.sbi.2016.07.009 n6ett8uo 0.421914 Liu_Z_2008, Qi_Z_2018, Chang_2011, DiMaio_2016 Jonić_2016, Robinson_2013, Effantin_2016, Wang_2013
388 Carravilla_2017 Effects of HIV-1 gp41-Derived Virucidal Peptides on Virus-like Lipid Membranes Carravilla, Pablo; Cruz, Antonio; Martin-Ugarte, Itziar; Oar-Arteta, Itziar R.; Torralba, Johanna; Apellaniz, Beatriz; Pérez-Gil, Jesús; Requejo-Isidro, José; Huarte, Nerea; Nieva, José L. 2017 2017-09-01 PMC N PMC5607204 28797705.0 10.1016/j.bpj.2017.06.061 y14kw98d 0.420799 Volmer_2010, Ivarsson_2012, UNKNOWN_1987, Gomis-Rüth_2003, Cosson_2013 Teissier_2011, Voß_D_2009, Guillén_2009, Harada_2005
389 Wang_2013 Computational modeling of the p7 monomer from HCV and its interaction with small molecule drugs Wang, Yi-Ting; Hsu, Hao-Jen; Fischer, Wolfgang B 2013 2013-07-18 COMM-USE N PMC3724979 23961398.0 10.1186/2193-1801-2-324 zwdmd7uf 0.420226 UNKNOWN_1987, Ivarsson_2012, Luytjes_1988, Smith_2003, Chang_2000 Guillén_2009, D’Errico_2009, Zhu_X_2015
390 Hwa_K_2008 Peptide Mimicrying Between SARS Coronavirus Spike Protein and Human Proteins Reacts with SARS Patient Serum Hwa, K.-Y.; Lin, W. M.; Hou, Y.-I.; Yeh, T.-M. 2008 2008-02-19 PMC N PMC2254527 18320019.0 10.1155/2008/326464 5x982n76 0.420226 Volmer_2010, Rice_1992, Compton_2014, Ban_J_2018, Shen_2005 Li_S_2016, Elshabrawy_2012, Du_L_2007, Wang_2009
391 Lu_Y_2008 Importance of SARS-CoV spike protein Trp-rich region in viral infectivity Lu, Yanning; Neo, Tuan Ling; Liu, Ding Xiang; Tam, James P. 2008 2008-07-04 None N PMC2519895 18424264.0 10.1016/j.bbrc.2008.04.044 k0i4d8w6 0.419670 Volmer_2010, Chang_2000, UNKNOWN_1987, Pong_2011, Gnirß_2014 Yuan_2004, Du_L_2007, Guillén_2009
392 Alsaadi_2019 A Fusion Peptide in the Spike Protein of MERS Coronavirus Alsaadi, Entedar A. J.; Neuman, Benjamin W.; Jones, Ian M. 2019 2019-09-05 COMM-USE N PMC6784214 31491938.0 10.3390/v11090825 nho5ejrf 0.418775 Volmer_2010, UNKNOWN_1987, Greene_2012, Chang_2000, Compton_2014 Guillén_2009, Peisajovich_2000, Du_L_2007
393 Robinson_2013 Max Bergmann lecture Protein epitope mimetics in the age of structural vaccinology‡ Robinson, John A 2013 2013-01-24 COMM-USE N PMC3592999 23349031.0 10.1002/psc.2482 njlqgih3 0.418577 Ivarsson_2012, Berkhout_2006, Sztuba-Solinska_2019, Naito_2007, Tessier_2019 van_der_Linden_2014, Zhang_2015, Singleton_2018
394 Zhang_2020 The first-in-class peptide binder to the SARS-CoV-2 spike protein G. Zhang; S. Pomplun; A. R. Loftis; A. Loas; B. L. Pentelute 2020 2020-03-20 BioRxiv Y 10.1101/2020.03.19.999318 yi6yu5l1 0.418577 Naito_2007, Ivarsson_2012, UNKNOWN_1987, Smith_2003, Pong_2011 Haga_2010, Veiga_2006, Joyce_2020, Zhu_Y_2020
395 Beniac_2017 Structure of the Ebola virus glycoprotein spike within the virion envelope at 11 Å resolution Beniac, Daniel R.; Booth, Timothy F. 2017 2017-04-11 COMM-USE N PMC5387728 28397863.0 10.1038/srep46374 kw8psrmz 0.417958 UNKNOWN_1987, Gomis-Rüth_2003, Volmer_2010, Chang_2000, UNKNOWN_1993 Voß_D_2009, Koellhoffer_2012
396 Wu_Zhang_2004 Structural similarity between HIV-1 gp41 and SARS-CoV S2 proteins suggests an analogous membrane fusion mechanism Wu Zhang, Xue; Leng Yap, Yee 2004 2004-05-31 PMC N PMC7141560 10.1016/j.theochem.2004.02.018 38d140wp 0.417572 Pong_2011, Volmer_2010, Jiang_2009, Tallmadge_2008, Kang_2009 Veiga_2006, Guillén_2009, Du_L_2007, Voß_D_2009
397 Pipirou_2011 Mouse LSECtin as a model for a human Ebola virus receptor Pipirou, Zoi; Powlesland, Alex S; Steffen, Imke; Pöhlmann, Stefan; Taylor, Maureen E; Drickamer, Kurt 2011 2011-01-21 NONCOMM N PMC3091528 21257728.0 10.1093/glycob/cwr008 41i20yuy 0.417270 Ivarsson_2012, Smith_2003, UNKNOWN_1987, Lawson_2012 Oleszak_1990
398 Dinesh_2020 Structural basis of RNA recognition by the SARS-CoV-2 nucleocapsid phosphoprotein Dhurvas Chandrasekaran Dinesh; Dominika Chalupska; Jan Silhan; Vaclav Veverka; Evzen Boura 2020 2020-04-05 BioRxiv Y 10.1101/2020.04.02.022194 ezpjdz55 0.417119 Pong_2011, Stork_2011, Kang_2009, Narayanan_2003, Gorbalenya_1988 Kumar_2007
399 Shikata_2006 Multi-layered network structure of amino acid (AA) metabolism characterized by each essential AA-deficient condition Shikata, N.; Maki, Y.; Noguchi, Y.; Mori, M.; Hanai, T.; Takahashi, M.; Okamoto, M. 2006 2006-10-13 PMC N PMC7088186 17031477.0 10.1007/s00726-006-0412-0 yjvw2ee1 0.416462 Wu_G_2005, Ivarsson_2012, Callison_1999, Luytjes_1988 Kim_J_2020, Uversky_2013, Tong_2009, Zemirli_2018
400 Chen_2010 Crystallization and preliminary X-ray diffraction analysis of the N-terminal domain of human coronavirus OC43 nucleocapsid protein Chen, I-Jung; Chou, Chia-Cheng; Liu, Chia-Ling; Lee, Cheng-Chung; Kan, Lou-Sing; Hou, Ming-Hon 2010 2010-06-24 PMC N PMC2898469 20606281.0 10.1107/s1744309110017616 et3mjp72 0.416462 Luytjes_1988, Callison_1999, UNKNOWN_1987, Lee_H_1991, Firth_2009 Yang_2009, Wang_2015, Huo_T_2015, Chen_2013
401 Macchiagodena_2020 Identification of Potential Binders of the Main Protease 3CLpro of the COVID-19 via Structure-Based Ligand Design and Molecular Modeling Macchiagodena, Marina; Pagliai, Marco; Procacci, Piero 2020 2020-04-18 PMC Y 10.1016/j.cplett.2020.137489 3t577va2 0.416386 Ivarsson_2012, Kinjo_2012, Staple_2005, Liao_2006
402 Brielle_2020 The SARS-CoV-2 exerts a distinctive strategy for interacting with the ACE2 human receptor Esther S. Brielle; Dina Schneidman-Duhovny; Michal Linial 2020 2020-03-12 BioRxiv Y 10.1101/2020.03.10.986398 jpkxjn6e 0.414798 Ivarsson_2012, Trobaugh_2017, Leung_2012, Li_F_2016, Chan_2016 Niemeyer_2018, Joyce_2020, Hoffmann_2020, Haga_2010
403 Chang_2008 HIV-1 matrix protein repositioning in nucleocapsid region fails to confer virus-like particle assembly Chang, Ching-Yuan; Chang, Yu-Fen; Wang, Shiu-Mei; Tseng, Ying-Tzu; Huang, Kuo-Jung; Wang, Chin-Tien 2008 2008-08-15 PMC N PMC7103396 18550141.0 10.1016/j.virol.2008.05.010 6cfuzqri 0.414570 Volmer_2010, Kang_2009, UNKNOWN_1987, Stork_2011 Masters_1992, Bhullar_2014
404 Zhao_2018 Identification of a peptide derived from the heptad repeat 2 region of the porcine epidemic diarrhea virus (PEDV) spike glycoprotein that is capable of suppressing PEDV entry and inducing neutralizing antibodies Zhao, Pengwei; Wang, Bin; Ji, Chun-Miao; Cong, Xiaoyan; Wang, Ming; Huang, Yao-Wei 2018 2018-02-28 PMC N PMC7113693 29203391.0 10.1016/j.antiviral.2017.11.021 pmvsyse0 0.414353 Tallmadge_2008, Rice_1992, Volmer_2010, Pong_2011, Yasui_2016 Yuan_2004, Jiang_2017
405 Poccia_1992 Packaging and unpackaging the sea urchin sperm genome Poccia, Dominic L.; Green, G.R. 1992 1992-06-30 PMC N 1502725.0 10.1016/0968-0004(92)90382-j dfcovxpp 0.414199 Blank_2017, Ivarsson_2012, UNKNOWN_1992, Smith_2003, Sundaramoorthy_2018 Bhat_2011
406 Basso_2016 SARS-CoV fusion peptides induce membrane surface ordering and curvature Basso, Luis G. M.; Vicente, Eduardo F.; Crusca Jr., Edson; Cilli, Eduardo M.; Costa-Filho, Antonio J. 2016 2016-11-28 COMM-USE N PMC5125003 27892522.0 10.1038/srep37131 tid8a464 0.413514 Cosson_2013, Modis_2013, UNKNOWN_1993, Hurley_2014, Weissenhorn_2013 Park_2017, Voß_D_2009, Guillén_2008, Chang_2008
407 Christensen_2019 PDZ Domains as Drug Targets Christensen, Nikolaj R.; Čalyševa, Jelena; Fernandes, Eduardo F. A.; Lüchow, Susanne; Clemmensen, Louise S.; Haugaard‐Kedström, Linda M.; Strømgaard, Kristian 2019 2019-04-24 PMC N PMC7161847 10.1002/adtp.201800143 0ac6rq14 0.413439 Ivarsson_2012, Cosson_2013, Choudhury_2017, Liu_X_2019, Pridgeon_2008
408 Li_T_2020 Characterization of the SARS-CoV-2 Spike in an Early Prefusion Conformation Tingting Li; Qingbing Zheng; Hai Yu; Dinghui Wu; Wenhui Xue; Yuyun Zhang; Xiaofen Huang; Lizhi Zhou; Zhigang Zhang; Zhenghui Zha; Tingting Chen; Zhiping Wang; Jie Chen; Hui Sun; Tingting Deng; Yingbin Wang; Yixin Chen; Qinjian Zhao; Jun Zhang; Ying Gu; Shaowei Li; Ningshao Xia 2020 2020-03-17 BioRxiv Y 10.1101/2020.03.16.994152 i9r77o70 0.413040 Volmer_2010, UNKNOWN_1987, Gomis-Rüth_2003, Pong_2011, Li_F_2016 Niemeyer_2018, Ng_O_2014, Zheng_2020, Rockx_2020
409 Wang_2010 On the mechanisms of bananin activity against severe acute respiratory syndrome coronavirus Wang, Zai; Huang, Jian‐Dong; Wong, Kin‐Ling; Wang, Pei‐Gang; Zhang, Hao‐Jie; Tanner, Julian A.; Spiga, Ottavia; Bernini, Andrea; Zheng, Bo‐Jian; Niccolai, Neri 2010 2010-12-06 PMC N PMC7164005 21134131.0 10.1111/j.1742-4658.2010.07961.x aaht8rq0 0.413040 Volmer_2010, Smith_2003, UNKNOWN_1987, Kang_2009, Gorbalenya_1988
410 Martinez-Gil_2015 Viroporins, Examples of the Two-Stage Membrane Protein Folding Model Martinez-Gil, Luis; Mingarro, Ismael 2015 2015-06-26 COMM-USE N PMC4517110 26131957.0 10.3390/v7072781 vcb6d6bv 0.412849 Weissenhorn_2013, Cosson_2013, Modis_2013, Ivarsson_2012 Ao_D_2015, Voß_D_2009, Kanjanahaluethai_2007
411 Ziółkowska_2006 Domain-Swapped Structure of the Potent Antiviral Protein Griffithsin and Its Mode of Carbohydrate Binding Ziółkowska, Natasza E.; O'Keefe, Barry R.; Mori, Toshiyuki; Zhu, Charles; Giomarelli, Barbara; Vojdani, Fakhrieh; Palmer, Kenneth E.; McMahon, James B.; Wlodawer, Alexander 2006 2006-07-31 PMC N PMC7126681 16843894.0 10.1016/j.str.2006.05.017 p2iazl7z 0.412400 Gomis-Rüth_2003, Ivarsson_2012, UNKNOWN_1987, Gorbalenya_1988, Pong_2011 Moulaei_2010, Kanitz_2019, Tsai_2010, Tong_2009
412 Scrima_2006 Dimerisation-dependent GTPase reaction of MnmE: how potassium acts as GTPase-activating element Scrima, Andrea; Wittinghofer, Alfred 2006 2006-06-08 PMC N PMC1500855 16763562.0 10.1038/sj.emboj.7601171 gujr2fno 0.411831 Smith_2003, Ivarsson_2012, Sato_2019, Blank_2017 Scrima_2004, Myllykoski_2017, Kanitz_2019, Buller_2012
413 Takano_2014 Screening and identification of T helper 1 and linear immunodominant antibody-binding epitopes in spike 1 domain and membrane protein of feline infectious peritonitis virus Takano, Tomomi; Morioka, Hiroyuki; Gomi, Kohji; Tomizawa, Keisuke; Doki, Tomoyoshi; Hohdatsu, Tsutomu 2014 2014-04-01 PMC N PMC7115422 24530149.0 10.1016/j.vaccine.2014.01.074 z10u9fqv 0.411100 Okda_2017, Tallmadge_2008, Yasui_2016, Hu_W_2013, Jiang_2006 Shi_P_2020, Xing_2009
414 Hirosue_2006 pH-Dependent Lytic Peptides Discovered by Phage-Display Hirosue, Sachiko; Weber, Thomas 2006 2006-05-01 PMC N PMC2515554 16700558.0 10.1021/bi052488s 2ir3jc0g 0.410809 Ivarsson_2012, Cosson_2013, Hock_2014, Naito_2007, Chan_2016 UNKNOWN_1989, Michalska_2018, Niemann_1982
415 Sainz_2006 Inhibition of severe acute respiratory syndrome-associated coronavirus (SARS-CoV) infectivity by peptides analogous to the viral spike protein Sainz, Bruno; Mossel, Eric C.; Gallaher, William R.; Wimley, William C.; Peters, C.J.; Wilson, Russell B.; Garry, Robert F. 2006 2006-09-30 None N PMC2582734 16616792.0 10.1016/j.virusres.2006.03.001 kohsnjmn 0.409830 Volmer_2010, Kang_2009, UNKNOWN_1987, Meyerson_2017, Pong_2011 Du_L_2007, Ng_O_2014, Choy_2004
416 Luo_H_2005 The nucleocapsid protein of SARS coronavirus has a high binding affinity to the human cellular heterogeneous nuclear ribonucleoprotein A1 Luo, Haibin; Chen, Qing; Chen, Jing; Chen, Kaixian; Shen, Xu; Jiang, Hualiang 2005 2005-05-09 PMC N PMC7094256 15862300.0 10.1016/j.febslet.2005.03.080 cxv3m4u1 0.409661 Shi_S_2000, Volmer_2010, Yasuda-Inoue_2013, Kang_2009, Blank_2017 Han_M_2008, Masters_1992, Wang_2009
417 Kainosho_2017 Isotope-Aided Methods for Biological NMR Spectroscopy: Past, Present, and Future Kainosho, Masatsune; Miyanoiri, Yohei; Takeda, Mitsuhiro 2017 2017-07-24 PMC N PMC7122432 10.1007/978-981-10-5966-7_2 9hkg34u6 0.409510 Liu_Z_2008, UNKNOWN_2004, Ivarsson_2012, Kinjo_2012, Sen_D_2018 Miyanoiri_2018, Lee_G_2012, Longhini_2016, Buller_2012
418 Wu_J_2012 Identification, Characterization and Application of a G-Quadruplex Structured DNA Aptamer against Cancer Biomarker Protein Anterior Gradient Homolog 2 Wu, Jie; Wang, Chi; Li, Xilan; Song, Yanling; Wang, Wei; Li, Cong; Hu, Jia; Zhu, Zhi; Li, Jiuxing; Zhang, Weiyun; Lu, Zhongxian; Yang, Chaoyong James 2012 2012-09-28 COMM-USE N PMC3460915 23029506.0 10.1371/journal.pone.0046393 rhsgqprf 0.409385 Ivarsson_2012, Trobaugh_2017, Haasnoot_2010, Tosoni_2015, Choudhury_2017 Gotte_2019, Deiab_2013, van_der_Linden_2014, Chen_2019
419 Tripet_2006 Template-based coiled-coil antigens elicit neutralizing antibodies to the SARS-coronavirus Tripet, Brian; Kao, Daniel J.; Jeffers, Scott A.; Holmes, Kathryn V.; Hodges, Robert S. 2006 2006-08-31 PMC N PMC7129695 16697221.0 10.1016/j.jsb.2006.03.019 xr6jlyij 0.409336 Volmer_2010, Pong_2011, UNKNOWN_1987, Dey_A_2009, Kang_2009 Yuan_2004, Du_L_2007, Yan_Z_2006
420 Hammond_2017 SARS‐unique fold in the Rousettus bat coronavirus HKU9 Hammond, Robert G.; Tan, Xuan; Johnson, Margaret A. 2017 2017-06-15 PMC N PMC5563143 28580734.0 10.1002/pro.3208 u4w5q0ar 0.408394 Pong_2011, Gorbalenya_1988, Volmer_2010, Rice_1992, Yasuda-Inoue_2013 Niemeyer_2018, Kumar_2007
421 Zenn_2010 Anti-Histidine Antibodies as Tools for Reversible Capturing of His-Tagged Fusion Proteins for Subsequent Binding Analysis Zenn, H.-M.; Hutschenreiter, S.; Herberg, F. W. 2010 2010-01-01 PMC N PMC7115108 10.1007/978-3-642-01144-3_42 f6m1mbbi 0.408204 Chu_R_2014, Gruschke_2008, Kuo_D_2011, Shenyang_2007 Raran-Kurussi_2016, Bhatnagar_2008, van_der_Linden_2014, Orbegozo-Medina_2019
422 Pridgeon_2003 A Method to Identify p62's UBA Domain Interacting Proteins Pridgeon, Julia W.; Geetha, Thangiah; Wooten, Marie W. 2003 2003-12-12 PMC N PMC302190 14702098.0 10.1251/bpo66 tvxpckxo 0.406276 Ivarsson_2012, Choudhury_2017, Smith_2003, Sato_2019 Sato_2019, Deng_2019, Zhang_2015, Tsukamoto_2013
423 Cool_1994 Identification of a sorting signal for the regulated secretory pathway at the N-terminus of pro-opiomelanocortin Cool, D.R.; Peng Loh, Y. 1994 1994-12-31 PMC N PMC7131109 7819333.0 10.1016/0300-9084(94)90156-2 og3hdnl2 0.406268 UNKNOWN_1993, UNKNOWN_1993, UNKNOWN_1987, Luytjes_1988 Faaberg_1996
424 Ma_W_2013 Rules for the recognition of dilysine retrieval motifs by coatomer Ma, Wenfu; Goldberg, Jonathan 2013 2013-03-12 PMC N PMC3616288 23481256.0 10.1038/emboj.2013.41 0lykpinp 0.406268 Ivarsson_2012, Cosson_2013, Smith_2003, UNKNOWN_1987, Wang_2013 UNKNOWN_1995
425 Roy_A_2016 Unique properties of Zika NS2B-NS3pro complexes as decoded by experiments and MD simulations Amrita Roy; Liangzhong Lim; Shagun Srivastava; Jianxing Song 2016 2016-09-28 BioRxiv N 10.1101/078113 l82aakrk 0.406045 Pong_2011, Volmer_2010, Gomis-Rüth_2003, Xu_Z_2012, Kang_2009 Roy_A_2017, Zhu_X_2015, Lim_L_2016
426 Deng_2015 An Overview of Practical Applications of Protein Disorder Prediction and Drive for Faster, More Accurate Predictions Deng, Xin; Gumm, Jordan; Karki, Suman; Eickholt, Jesse; Cheng, Jianlin 2015 2015-07-07 COMM-USE N PMC4519904 26198229.0 10.3390/ijms160715384 ypy56yxr 0.405727 Kirillova_2009, Liu_Z_2008, Castrignano_2015, Chang_2011 Uversky_2013, Peng_2013, Wang_2013, Basu_2016
427 Lei_C_2020 Potent neutralization of 2019 novel coronavirus by recombinant ACE2-Ig Changhai Lei; Wenyan Fu; Kewen Qian; Tian Li; Sheng Zhang; Min Ding; Shi Hu 2020 2020-02-02 BioRxiv Y 10.1101/2020.02.01.929976 aeuy92bx 0.404939 Volmer_2010, UNKNOWN_1987, Ban_J_2018, Naito_2007, Shen_2005 Chen_2017, Escriou_2014, Elshabrawy_2012, Andoh_2015
428 Garry_2009 Proteomics computational analyses suggest that the bornavirus glycoprotein is a class III viral fusion protein (γ penetrene) Garry, Courtney E; Garry, Robert F 2009 2009-09-18 COMM-USE N PMC2753318 19765297.0 10.1186/1743-422x-6-145 2w26l80a 0.404885 Pong_2011, Crowe_2014, Gorbalenya_1988, UNKNOWN_1987, Narayanan_2003 Zhang_2015, Kanjanahaluethai_2007
429 Chu_R_2014 Capture-stabilize approach for membrane protein SPR assays Chu, Ruiyin; Reczek, David; Brondyk, William 2014 2014-12-08 NONCOMM N PMC5154539 25484112.0 10.1038/srep07360 ueofl0wn 0.404464 Ivarsson_2012, UNKNOWN_1993, UNKNOWN_1993, UNKNOWN_1987 Wear_2005, Zenn_2010, van_der_Linden_2014, Huang_2017
430 Lee_B_2009 Identification of protein functions using a machine-learning approach based on sequence-derived properties Lee, Bum Ju; Shin, Moon Sun; Oh, Young Joon; Oh, Hae Seok; Ryu, Keun Ho 2009 2009-08-09 COMM-USE N PMC2731080 19664241.0 10.1186/1477-5956-7-27 85fqseal 0.403964 Chang_2011, Qi_Z_2018, Saw_A_2019, Dai_Q_2012, Lee_C_2017 Cai_C_2006, Han_L_2005
431 Chang_2007 Reversible Unfolding of the Severe Acute Respiratory Syndrome Coronavirus Main Protease in Guanidinium Chloride Chang, Hui-Ping; Chou, Chi-Yuan; Chang, Gu-Gang 2007 2007-02-15 None N PMC1783898 17142288.0 10.1529/biophysj.106.091736 9h0f96dn 0.403744 Smith_2003, UNKNOWN_1987, Yang_2010, Sato_2019, Ivarsson_2012 Chou_2012, Lin_P_2008, Tsai_2010
432 McReynolds_2009 Dynamics of SARS-coronavirus HR2 domain in the prefusion and transition states McReynolds, Susanna; Jiang, Shaokai; Rong, Lijun; Caffrey, Michael 2009 2009-12-31 PMC N PMC2794128 19819173.0 10.1016/j.jmr.2009.09.012 01jluimk 0.403670 den_Boon_2010, Volmer_2010, Li_F_2016, Pong_2011, Rice_1992 Guillén_2009, Li_T_2020, Xia_B_2011, Guillén_2008
433 Tan_Y_2006 Amino acid residues critical for RNA-binding in the N-terminal domain of the nucleocapsid protein are essential determinants for the infectivity of coronavirus in cultured cells Tan, Yong Wah; Fang, Shouguo; Fan, Hui; Lescar, Julien; Liu, D.X. 2006 2006-09-13 NONCOMM N PMC1635287 16971454.0 10.1093/nar/gkl650 at9jg710 0.403339 Pong_2011, Kang_2009, Volmer_2010, Meyerson_2017, Brockway_2005 Masters_1992
434 Fielding_2006 Severe acute respiratory syndrome coronavirus protein 7a interacts with hSGT Fielding, Burtram C.; Gunalan, Vithiagaran; Tan, Timothy H.P.; Chou, Chih-Fong; Shen, Shuo; Khan, Sehaam; Lim, Seng Gee; Hong, Wanjin; Tan, Yee-Joo 2006 2006-05-19 PMC N PMC7092935 16580632.0 10.1016/j.bbrc.2006.03.091 aq7amykr 0.403036 Volmer_2010, Li_C_2013, Ban_J_2018, Kang_2009, Shen_2005 Kumar_2007, Lin_C_2005, Thornbrough_2016, Calvo_2012
435 Rathore_2019 Intracellular Vesicle Fusion Requires a Membrane-Destabilizing Peptide Located at the Juxtamembrane Region of the v-SNARE Rathore, Shailendra S.; Liu, Yinghui; Yu, Haijia; Wan, Chun; Lee, MyeongSeon; Yin, Qian; Stowell, Michael H.B.; Shen, Jingshi 2019 2019-12-24 NONCOMM N PMC6990648 31875562.0 10.1016/j.celrep.2019.11.107 pudp1eoo 0.403036 Wang_2013, UNKNOWN_1993, UNKNOWN_1993, Cosson_2013 Chang_2008, UNKNOWN_1995, UNKNOWN_1989, Peisajovich_2000
436 McNulty_2018 Cryo-EM Elucidation of the Structure of Bacteriophage P22 Virions after Genome Release McNulty, Reginald; Cardone, Giovanni; Gilcrease, Eddie B.; Baker, Timothy S.; Casjens, Sherwood R.; Johnson, John E. 2018 2018-03-01 PMC N PMC5883611 29590587.0 10.1016/j.bpj.2018.01.026 nh3oi8kv 0.402468 den_Boon_2010, Stork_2011, Volmer_2010, Rice_1992, Payne_2017
437 Scalabrin_2017 The cellular protein hnRNP A2/B1 enhances HIV-1 transcription by unfolding LTR promoter G-quadruplexes Scalabrin, Matteo; Frasson, Ilaria; Ruggiero, Emanuela; Perrone, Rosalba; Tosoni, Elena; Lago, Sara; Tassinari, Martina; Palù, Giorgio; Richter, Sara N. 2017 2017-03-24 COMM-USE N PMC5364415 28338097.0 10.1038/srep45244 ko9y5m2s 0.402080 Stork_2011, Yasuda-Inoue_2013, Pong_2011, Blank_2017, Ivanova_2015 Tosoni_2015, Han_M_2008
438 Vila_2018 (13)C Chemical Shifts in Proteins: A Rich Source of Encoded Structural Information Vila, Jorge A.; Arnautova, Yelena A. 2018 2018-07-20 PMC N PMC7123919 10.1007/978-3-319-95843-9_20 gytg4iku 0.401860 Liu_Z_2008, Qi_Z_2018, Kirillova_2009, Plewczyński_2008, Chang_2011 Vila_2014, Lee_G_2012, Buller_2012
439 Wang_2014 Advantages of mRNA display selections over other selection techniques for investigation of protein–protein interactions Wang, Hui; Liu, Rihe 2014 2014-01-09 PMC N PMC7103729 21679115.0 10.1586/epr.11.15 3o6mdx3e 0.401281 Qi_Z_2018, Chang_2011, Rice_1992, Trobaugh_2017 van_der_Linden_2014
440 Vashi_2020 Understanding the B and T cells epitopes of spike protein of severe respiratory syndrome coronavirus-2: A computational way to predict the immunogens Yoya Vashi; Vipin Jagrit; Sachin Kumar 2020 2020-04-10 BioRxiv Y 10.1101/2020.04.08.013516 ch004jxy 0.400854 Volmer_2010, Naito_2007, Rice_1992, Callison_1999, Cheng_2012 Jiang_2017, Huang_2012, Choy_2004
441 Su_L_1999 Minor groove RNA triplex in the crystal structure of a ribosomal frameshifting viral pseudoknot Su, Li; Chen, Liqing; Egli, Martin; Berger, James M.; Rich, Alexander 1999 1999-01-01 PMC N PMC7097825 10074948.0 10.1038/6722 93qae2al 0.400800 Morikawa_1992, Guo_Y_2013, Brierley_1991, Brierley_1989 Cornish_2006, Marcheschi_2007
442 Kwon_2019 Quality Screening of Incorrectly Folded Soluble Aggregates from Functional Recombinant Proteins Kwon, Soon Bin; Yu, Ji Eun; Kim, Jihoon; Oh, Hana; Park, Chan; Lee, Jinhee; Seong, Baik L. 2019 2019-02-19 COMM-USE N PMC6413200 30791505.0 10.3390/ijms20040907 54hvxhzd 0.400711 Volmer_2010, Ivarsson_2012, Stork_2011, Kuo_D_2011 Mamipour_2017, Raran-Kurussi_2016, Butt_2005, Eshaghi_2005
443 Lin_H_2011 Characterization of the spike protein of human coronavirus NL63 in receptor binding and pseudotype virus entry Lin, Han-Xin; Feng, Yan; Tu, Xinming; Zhao, Xuesen; Hsieh, Chih-Heng; Griffin, Lauren; Junop, Murray; Zhang, Chengsheng 2011 2011-09-30 PMC N PMC7114368 21798295.0 10.1016/j.virusres.2011.06.029 ihjcc9z9 0.400388 UNKNOWN_1987, Volmer_2010, Chang_2000, UNKNOWN_1993, Kang_2009 Chang_2000
444 Shameer_2012 Functional repertoire, molecular pathways and diseases associated with 3D domain swapping in the human proteome Shameer, Khader; Sowdhamini, Ramanathan 2012 2012-04-03 COMM-USE N PMC3508620 22472218.0 10.1186/2043-9113-2-8 6ld9zqj9 0.399528 Ivarsson_2012, Wang_2006, Kinjo_2012, Liu_Z_2008 Abad_2009, Sato_2019, Tong_2009, Mascarenhas_2017
445 Heal_2018 Applying graph theory to protein structures: an Atlas of coiled coils Heal, Jack W; Bartlett, Gail J; Wood, Christopher W; Thomson, Andrew R; Woolfson, Derek N 2018 2018-10-01 COMM-USE N PMC6157074 29722888.0 10.1093/bioinformatics/bty347 pq1vaknj 0.399165 Wang_2006, Montgomery_2004, Lee_C_2017, Qi_Z_2018, Lu_Q_2006 Apgar_2008, Song_2005, Munteanu_2008, van_Dijk_2008
446 Chowdhury_2020 Biophysical characterization of the SARS-CoV2 spike protein binding with the ACE2 receptor explains increased COVID-19 pathogenesis Ratul Chowdhury; Costas D Maranas 2020 2020-03-31 BioRxiv Y 10.1101/2020.03.30.015891 lotyldfd 0.399080 UNKNOWN_1987, Smith_2003, Volmer_2010, Ivarsson_2012, Chang_2000 Haga_2010, Elshabrawy_2012, Du_L_2007, Niemeyer_2018
447 Schlegel_2009 Solution Characterization of the Extracellular Region of CD147 and Its Interaction with Its Enzyme Ligand Cyclophilin A Schlegel, Jennifer; Redzic, Jasmina S.; Porter, Christopher C.; Yurchenko, Vyacheslav; Bukrinsky, Michael; Labeikovsky, Wladimir; Armstrong, Geoffrey S.; Zhang, Fengli; Isern, Nancy G.; DeGregori, James; Hodges, Robert; Eisenmesser, Elan Zohar 2009 2009-08-21 None N PMC2940942 19500591.0 10.1016/j.jmb.2009.05.080 hhbrnpe6 0.398937 Ivarsson_2012, Choudhury_2017, Greene_2012, Smith_2003, Haasnoot_2010 Yurchenko_2010, Yurchenko_2006, Gabrilovac_2005
448 Lu_L_2014 Structure-based discovery of Middle East respiratory syndrome coronavirus fusion inhibitor Lu, Lu; Liu, Qi; Zhu, Yun; Chan, Kwok-Hung; Qin, Lili; Li, Yuan; Wang, Qian; Chan, Jasper Fuk-Woo; Du, Lanying; Yu, Fei; Ma, Cuiqing; Ye, Sheng; Yuen, Kwok-Yung; Zhang, Rongguang; Jiang, Shibo 2014 2014-01-28 PMC N PMC7091805 24473083.0 10.1038/ncomms4067 yk9xcfou 0.398893 Pong_2011, Gomis-Rüth_2003, Volmer_2010, Gnirß_2014, UNKNOWN_1987 Channappanavar_2015, Chen_2017, Veiga_2006, Xia_S_2019
449 Rey_F_2018 Common Features of Enveloped Viruses and Implications for Immunogen Design for Next-Generation Vaccines Rey, Felix A.; Lok, Shee-Mei 2018 2018-03-08 PMC N PMC7112304 29522750.0 10.1016/j.cell.2018.02.054 akvs7r4s 0.398611 Hobman_1993, Hock_2014, den_Boon_2010, Rice_1992, Volmer_2010 Prabakaran_2007
450 Masters_1992 Localization of an RNA-binding domain in the nucleocapsid protein of the coronavirus mouse hepatitis virus Masters, P. S. 1992 1992-01-01 PMC N PMC7086615 1322650.0 10.1007/bf01309634 kyavg4vu 0.398611 Stork_2011, Kang_2009, Volmer_2010, Pong_2011, Shi_S_2000 Bhullar_2014, Nowak_1984
451 Ye_Y_2007 Computational studies of the binding modes of A(2A) adenosine receptor antagonists Ye, Y.; Wei, J.; Dai, X.; Gao, Q. 2007 2007-11-05 PMC N PMC7087644 17978889.0 10.1007/s00726-007-0604-2 7261eu96 0.398453 Ivarsson_2012, Naito_2007, Cambi_2005, Kinjo_2012, Leung_2012 Grazioso_2012, Li_G_2009, Niu_C_2008, Li_J_2006
452 He_Y_2012 Epitope mapping by random peptide phage display reveals essential residues for vaccinia extracellular enveloped virion spread He, Yong; Wang, Yonggang; Struble, Evi B; Zhang, Pei; Chowdhury, Soma; Reed, Jennifer L; Kennedy, Michael; Scott, Dorothy E; Fisher, Robert W 2012 2012-09-24 COMM-USE N PMC3495767 23006741.0 10.1186/1743-422x-9-217 vaux5cha 0.398407 Volmer_2010, Pong_2011, Rice_1992, Jiang_2006, Hu_W_2013 Yu_M_2000, Brun_2014
453 Sugrue_1991 Structural characteristics of the M2 protein of influenza a viruses: Evidence that it forms a tetrameric channe Sugrue, R.J.; Hay, A.J. 1991 1991-02-28 PMC N PMC7131614 1989386.0 10.1016/0042-6822(91)90075-m y7t47t7a 0.397652 Ivarsson_2012, Gomis-Rüth_2003, UNKNOWN_1987, Volmer_2010 Voß_D_2009
454 Hognon_2020 Role of RNA Guanine Quadruplexes in Favoring the Dimerization of SARS Unique Domain in Coronaviruses Cécilia Hognon; Tom Miclot; Cristina Garcia Iriepa; Antonio Francés-Monerris; Stephanie Grandemange; Alessio Terenzi; Marco Marazzi; Giampaolo Barone; Antonio Monari 2020 2020-04-10 BioRxiv Y 10.1101/2020.04.07.029447 dnppshnv 0.397221 Berkhout_2006, Trobaugh_2017, den_Boon_2010, Chan_2016, Ivarsson_2012 Niemeyer_2018, Guillén_2009, Cheng_2010
455 Chen_2009 Expression and membrane integration of SARS-CoV E protein and its interaction with M protein Chen, Shih-Chi; Lo, Shih-Yen; Ma, Hsin-Chieh; Li, Hui-Chun 2009 2009-03-19 PMC N PMC7088807 19322648.0 10.1007/s11262-009-0341-6 st9biegt 0.397101 UNKNOWN_1987, UNKNOWN_1993, UNKNOWN_1993, Maeda_2001, Chang_2000 Voß_D_2009, Ma_H_2008, Wang_2009, UNKNOWN_1991
456 Li_F_2016 Structure, Function, and Evolution of Coronavirus Spike Proteins Li, Fang 2016 2016-09-29 PMC N PMC5457962 27578435.0 10.1146/annurev-virology-110615-042301 2sxtczbf 0.396828 Weissenhorn_2013, Gomis-Rüth_2003, Volmer_2010, den_Boon_2010 Chang_2000, Beniac_2007, Du_L_2007
457 Strandin_2011 The cytoplasmic tail of hantavirus Gn glycoprotein interacts with RNA Strandin, Tomas; Hepojoki, Jussi; Wang, Hao; Vaheri, Antti; Lankinen, Hilkka 2011 2011-09-15 PMC N 21807393.0 10.1016/j.virol.2011.06.030 au7s3dmp 0.396671 Pong_2011, Stork_2011, Gorbalenya_1988, Kang_2009, Yasuda-Inoue_2013
458 Wucherpfennig_1995 Molecular mimicry in T cell-mediated autoimmunity: Viral peptides activate human T cell clones specific for myelin basic protein Wucherpfennig, Kai W; Strominger, Jack L 1995 1995-03-10 PMC N 7534214.0 10.1016/0092-8674(95)90348-8 xzusv5zj 0.396497 Hausmann_1997, Hansen_2018, Kolls_2012, Kim_T_2005 Rott_1994, Liebert_1993, Liebert_1990, Kim_S_2012
459 Punjani_2020 3D Variability Analysis: Directly resolving continuous flexibility and discrete heterogeneity from single particle cryo-EM images Ali Punjani; David J. Fleet 2020 2020-04-09 BioRxiv N 10.1101/2020.04.08.032466 yxo8oanc 0.396142 Qi_Z_2018, Chang_2011, Dawson_2007, Dai_Q_2012, Liu_Z_2008 Zhong_2020, Jonić_2016, Punjani_2019, Effantin_2016
460 Hsu_H_2014 Structure based computational assessment of channel properties of assembled ORF‐8a from SARS‐CoV Hsu, Hao‐Jen; Lin, Meng‐Han; Schindler, Christina; Fischer, Wolfgang B. 2014 2014-12-19 PMC N PMC7167713 25394339.0 10.1002/prot.24721 9wyoihk6 0.396142 UNKNOWN_1987, UNKNOWN_1993, Ivarsson_2012, Callison_1999, UNKNOWN_1993
461 Othman_2020 In silico study of the spike protein from SARS-CoV-2 interaction with ACE2: similarity with SARS-CoV, hot-spot analysis and effect of the receptor polymorphism Houcemeddine Othman; Zied Bouslama; Jean-Tristan Brandenburg; Jorge da Rocha; Yosr Hamdi; Kais Ghedira; Najet-Srairi Abid; Scott Hazelhurst 2020 2020-03-07 BioRxiv Y 10.1101/2020.03.04.976027 wynyrumi 0.395842 Ivarsson_2012, Volmer_2010, Trobaugh_2017, UNKNOWN_1987, Berkhout_2006 Guillon_2008, Zhang_2009, Zheng_2020, Lupala_2020
462 Sun_P_2004 Overview of Protein Structural and Functional Folds Sun, Peter D.; Foster, Christine E.; Boyington, Jeffrey C. 2004 2004-05-01 PMC N PMC7162418 18429251.0 10.1002/0471140864.ps1701s35 gl4xk9mg 0.395574 Wang_2006, Montgomery_2004, Sen_D_2018, Liu_Z_2008
463 Chow_2005 Adenovirus-mediated expression of the C-terminal domain of SARS-CoV spike protein is sufficient to induce apoptosis in Vero E6 cells Chow, Ken Y.C.; Yeung, Yin Shan; Hon, Chung Chau; Zeng, Fanya; Law, Ka Man; Leung, Frederick C.C. 2005 2005-12-19 PMC N PMC7094440 16310778.0 10.1016/j.febslet.2005.10.065 l2ixbhyb 0.395574 Ban_J_2018, Greene_2012, Kang_2009, Volmer_2010, Meyerson_2017 Wang_2009, Liu_M_2006, Du_L_2007, Chen_2009
464 Sutton_2004 The nsp9 Replicase Protein of SARS-Coronavirus, Structure and Functional Insights Sutton, Geoff; Fry, Elizabeth; Carter, Lester; Sainsbury, Sarah; Walter, Tom; Nettleship, Joanne; Berrow, Nick; Owens, Ray; Gilbert, Robert; Davidson, Andrew; Siddell, Stuart; Poon, Leo L.M.; Diprose, Jonathan; Alderton, David; Walsh, Martin; Grimes, Jonathan M.; Stuart, David I. 2004 2004-02-29 PMC N PMC7135010 14962394.0 10.1016/j.str.2004.01.016 ihwwfnbn 0.395574 Pong_2011, Gorbalenya_1988, UNKNOWN_1987, Kang_2009, Stork_2011 Kumar_2007
465 Vila_2014 (13)C Chemical Shifts in Proteins: A Rich Source of Encoded Structural Information Vila, Jorge A.; Arnautova, Yelena A. 2014 2014-01-01 PMC N PMC7121069 10.1007/978-3-642-28554-7_19 jz2mrn4t 0.394814 Liu_Z_2008, Qi_Z_2018, Kirillova_2009, Plewczyński_2008, Chang_2011 Vila_2018, Lee_G_2012, Buller_2012
466 Freund_2015 Reconstitution of the receptor-binding motif of the SARS coronavirus Freund, Natalia T.; Roitburd-Berman, Anna; Sui, Jianhua; Marasco, Wayne A.; Gershoni, Jonathan M. 2015 2015-10-20 PMC N PMC7107155 26487711.0 10.1093/protein/gzv052 5wvbtxuy 0.394625 Okda_2017, Ban_J_2018, UNKNOWN_1987, Hu_W_2013, Volmer_2010 Elshabrawy_2012, Du_L_2007
467 Kanitz_2019 Structural basis for catalysis and substrate specificity of a 3C-like cysteine protease from a mosquito mesonivirus Kanitz, Manuel; Blanck, Sandra; Heine, Andreas; Gulyaeva, Anastasia A.; Gorbalenya, Alexander E.; Ziebuhr, John; Diederich, Wibke E. 2019 2019-07-31 None N PMC7111312 31078932.0 10.1016/j.virol.2019.05.001 1ksfo0pr 0.394582 Smith_2003, Sato_2019, Ivarsson_2012, UNKNOWN_1987, Pong_2011 Someya_2008, Zunszain_2010
468 Hollier_2005 The C-terminal tail of the gp41 transmembrane envelope glycoprotein of HIV-1 clades A, B, C, and D may exist in two conformations: an analysis of sequence, structure, and function Hollier, Mark J.; Dimmock, Nigel J. 2005 2005-07-05 PMC N PMC7111842 15913700.0 10.1016/j.virol.2005.04.015 61om170g 0.393311 UNKNOWN_1987, Volmer_2010, Gnirß_2014, Chang_2000, UNKNOWN_1993 Voß_D_2009, Guillén_2009
469 Ziółkowska_2007 Crystallographic studies of the complexes of antiviral protein griffithsin with glucose and N-acetylglucosamine Ziółkowska, Natasza E.; Shenoy, Shilpa R.; O'Keefe, Barry R.; Wlodawer, Alexander 2007 2007-07-01 PMC N PMC2206701 17567736.0 10.1110/ps.072889407 8qd1a997 0.392749 Ivarsson_2012, Chan_2016, Volmer_2010, Tosoni_2015, UNKNOWN_1987 Moulaei_2010, Ziółkowska_2006, McDowell_1988, Lee_C_2019
470 Huang_2016 NMR assignments of the macro domain from Middle East respiratory syndrome coronavirus (MERS-CoV) Huang, Yi-Ping; Cho, Chao-Cheng; Chang, Chi-Fon; Hsu, Chun-Hua 2016 2016-03-18 PMC N PMC7091117 26993639.0 10.1007/s12104-016-9676-9 qgklt8wa 0.392224 Hao_W_2017, Ivarsson_2012, UNKNOWN_1987, Volmer_2010 Hao_W_2017, Lei_J_2014
471 Lung_2020 The potential SARS-CoV-2 entry inhibitor Jrhau Lung; Yu-Shih Lin; Yao-Hsu Yang; Yu-Lun Chou; Geng-He Chang; Ming-Shao Tsai; Cheng-Ming Hsu; Reming-Albert Yeh; Li-Hsin Shu; Yu-Ching Cheng; Hung Te Liu; Ching-Yuan Wu 2020 2020-03-26 BioRxiv Y 10.1101/2020.03.26.009803 7w79zeib 0.391856 UNKNOWN_1987, Volmer_2010, Callison_1999, Smith_2003, Ivarsson_2012 Yuan_2004, Veiga_2006, Haga_2010, Niemeyer_2018
472 Soykut_2008 Selection of staphylococcal enterotoxin B (SEB)-binding peptide using phage display technology Soykut, Esra Acar; Dudak, Fahriye Ceyda; Boyacı, İsmail Hakkı 2008 2008-05-23 PMC N PMC7117543 18359289.0 10.1016/j.bbrc.2008.03.065 n4ooziv4 0.391485 Nagesha_2001, Cruz_2006, Callison_1999, Jiang_2011 van_der_Linden_2014, Wang_2011
473 Hurdiss_2020 Cryo-EM structure of coronavirus-HKU1 haemagglutinin esterase reveals architectural changes arising from prolonged circulation in humans Daniel L. Hurdiss; Ieva Drulyte; Yifei Lang; Tatiana M. Shamorkina; Matti F. Pronker; Frank J.M. van Kuppeveld; Joost Snijder; Raoul J. de Groot 2020 2020-03-25 BioRxiv N 10.1101/2020.03.25.998963 5lld270m 0.391454 Volmer_2010, UNKNOWN_1987, Gomis-Rüth_2003, Pong_2011, den_Boon_2010 Effantin_2016, Lang_2020
474 Ismail_2020 Immuno-informatics Characterization SARS-CoV-2 Spike Glycoprotein for Prioritization of Epitope based Multivalent Peptide Vaccine Saba Ismail; Sajjad Ahmad; Syed Sikander Azam 2020 2020-04-12 BioRxiv Y 10.1101/2020.04.05.026005 3jmo35jc 0.391148 Berkhout_2006, Ivarsson_2012, Leung_2012, Lester_2014, Shi_J_2012 Escriou_2014, Li_L_2020, Shi_J_2015
475 Liu_H_2013 A Universal Protein Tag for Delivery of SiRNA-Aptamer Chimeras Liu, Hong Yan; Gao, Xiaohu 2013 2013-11-07 NONCOMM N PMC3819613 24196104.0 10.1038/srep03129 0atfsivf 0.389796 Ivarsson_2012, Naito_2007, Volmer_2010, UNKNOWN_1987 Zhang_2006, Wu_S_2009, Laufer_2008, Akinc_2008
476 Pervushin_2009 Structure and Inhibition of the SARS Coronavirus Envelope Protein Ion Channel Pervushin, Konstantin; Tan, Edward; Parthasarathy, Krupakar; Lin, Xin; Jiang, Feng Li; Yu, Dejie; Vararattanavech, Ardcharaporn; Soong, Tuck Wah; Liu, Ding Xiang; Torres, Jaume 2009 2009-07-10 None N PMC2702000 19593379.0 10.1371/journal.ppat.1000511 1e102wrc 0.389686 UNKNOWN_1987, Volmer_2010, Chang_2000, Gomis-Rüth_2003, Shen_2005 Voß_D_2009, Chen_2009
477 Agopian_2016 Structure and interaction with lipid membrane models of Semliki Forest virus fusion peptide Agopian, A.; Quetin, M.; Castano, S. 2016 2016-11-30 PMC N 27425030.0 10.1016/j.bbamem.2016.07.003 t6on5w2t 0.389391 Gomis-Rüth_2003, UNKNOWN_1987, Volmer_2010, UNKNOWN_1993, UNKNOWN_1993
478 Bussmann_2006 Antigenic and cellular localisation analysis of the severe acute respiratory syndrome coronavirus nucleocapsid protein using monoclonal antibodies Bussmann, Bianca M.; Reiche, Sven; Jacob, Lotta H.; Braun, Jan Matthias; Jassoy, Christian 2006 2006-12-31 PMC N PMC7114340 16920216.0 10.1016/j.virusres.2006.07.005 nw5l1nen 0.389279 Volmer_2010, UNKNOWN_1987, Pong_2011, UNKNOWN_1993, Maeda_2001 Zhang_2015, Li_S_2016
479 Guarino_2005 Mutational Analysis of the SARS Virus Nsp15 Endoribonuclease: Identification of Residues Affecting Hexamer Formation Guarino, Linda A.; Bhardwaj, Kanchan; Dong, Wen; Sun, Jingchuan; Holzenburg, Andreas; Kao, Cheng 2005 2005-11-11 PMC N PMC7094243 16216269.0 10.1016/j.jmb.2005.09.007 nyjfo0z6 0.389279 Stork_2011, Gomis-Rüth_2003, Pong_2011, UNKNOWN_1987, Diaz_2011 Someya_2008, Eshaghi_2005
480 Minakshi_2014 The SARS Coronavirus 3a protein binds calcium in its cytoplasmic domain Minakshi, Rinki; Padhan, Kartika; Rehman, Safikur; Hassan, Md. Imtaiyaz; Ahmad, Faizan 2014 2014-10-13 PMC N PMC7114474 25116391.0 10.1016/j.virusres.2014.08.001 gk9yu74k 0.389279 Volmer_2010, UNKNOWN_1987, UNKNOWN_1993, Callison_1999, Chang_2000 Kumar_2007, Chen_2009, Kanjanahaluethai_2007
481 Thomas_1988 Two mRNAs that differ by two nontemplated nucleotides encode the amino coterminal proteins P and V of the paramyxovirus SV5 Thomas, Sheila M.; Lamb, Robert A.; Paterson, Reay G. 1988 1988-09-09 PMC N PMC7133244 3044614.0 10.1016/s0092-8674(88)91285-8 tysyq6o4 0.388979 Luytjes_1988, Firth_2009, Morikawa_1992, UNKNOWN_1987
482 Hoffmann_2006 Three dimensional model of severe acute respiratory syndrome coronavirus helicase ATPase catalytic domain and molecular design of severe acute respiratory syndrome coronavirus helicase inhibitors Hoffmann, Marcin; Eitner, Krystian; von Grotthuss, Marcin; Rychlewski, Leszek; Banachowicz, Ewa; Grabarkiewicz, Tomasz; Szkoda, Tomasz; Kolinski, Andrzej 2006 2006-09-14 PMC N PMC7088412 16972168.0 10.1007/s10822-006-9057-z ij5xrtzx 0.388963 Ivarsson_2012, Kinjo_2012, Smith_2003, Chan_2016, Guo_Y_2013 Kanitz_2019, Wei_P_2006, Lei_J_2014, Kaczor_2010
483 Tosoni_2015 Nucleolin stabilizes G-quadruplex structures folded by the LTR promoter and silences HIV-1 viral transcription Tosoni, Elena; Frasson, Ilaria; Scalabrin, Matteo; Perrone, Rosalba; Butovskaya, Elena; Nadai, Matteo; Palù, Giorgio; Fabris, Dan; Richter, Sara N. 2015 2015-10-15 COMM-USE N PMC4605322 26354862.0 10.1093/nar/gkv897 3g67f8sw 0.388952 Stork_2011, Pong_2011, Yasuda-Inoue_2013, Blank_2017 Scalabrin_2017, De Nicola_2016
484 Guillén_2009 Interaction of a peptide corresponding to the loop domain of the S2 SARS-CoV virus protein with model membranes Guillén, Jaime; De Almeida, Rodrigo F. M.; Prieto, Manuel; Villalaín, José 2009 2009-07-09 PMC N PMC7113911 19412834.0 10.1080/09687680902926203 f1yap32i 0.388952 UNKNOWN_1987, Volmer_2010, UNKNOWN_1993, Chang_2000, UNKNOWN_1993 Guillén_2008, Voß_D_2009, Chen_2009, Yuan_2004
485 Li_X_2011 Novel Inhibitor Design for Hemagglutinin against H1N1 Influenza Virus by Core Hopping Method Li, Xiao-Bo; Wang, Shu-Qing; Xu, Wei-Ren; Wang, Run-Ling; Chou, Kuo-Chen 2011 2011-11-30 COMM-USE N PMC3227604 22140516.0 10.1371/journal.pone.0028111 16syz1o7 0.388400 Naito_2007, Bradbury_2003, Berkhout_2006, Wiwanitkit_2014, Conzelmann_1996 Zhu_X_2015, Lee_C_2019, Xie_X_2015
486 Vankadari_2020 Emerging WuHan (COVID-19) coronavirus: glycan shield and structure prediction of spike glycoprotein and its interaction with human CD26 Vankadari, Naveen; Wilce, Jacqueline A. 2020 2020-03-17 COMM-USE Y PMC7103712 32178593.0 10.1080/22221751.2020.1739565 boqygpow 0.388289 Ivarsson_2012, Haasnoot_2010, Trobaugh_2017, Berkhout_2006, Leung_2012 Ng_O_2014, Jiang_2017, Zheng_2020, Shajahan_2020
487 Joyce_2020 A Cryptic Site of Vulnerability on the Receptor Binding Domain of the SARS-CoV-2 Spike Glycoprotein M. Gordon Joyce; Rajeshwer S. Sankhala; Wei-Hung Chen; Misook Choe; Hongjun Bai; Agnes Hajduczki; Lianying Yan; Spencer L. Sterling; Caroline E. Peterson; Ethan C. Green; Clayton Smith; Natalia de Val; Mihret Amare; Paul Scott; Eric D. Laing; Christopher C. Broder; Morgane Rolland; Nelson L. Michael; Kayvon Modjarrad 2020 2020-03-17 BioRxiv Y 10.1101/2020.03.15.992883 ebbzx8yr 0.387504 Volmer_2010, Hu_W_2013, Naito_2007, Pong_2011, UNKNOWN_1987 Zheng_2020, Elshabrawy_2012, Ng_O_2014
488 Cai_C_2006 Prediction of Transmembrane Proteins from Their Primary Sequence by Support Vector Machine Approach Cai, C. Z.; Yuan, Q. F.; Xiao, H. G.; Liu, X. H.; Han, L. Y.; Chen, Y. Z. 2006 2006-01-01 PMC N PMC7121931 10.1007/11816102_56 rktwtqtq 0.387436 Saw_A_2019, Lee_C_2017, Qi_Z_2018, Chang_2011, Gardner_2004 Lee_B_2009, Wang_2013, Han_L_2005
489 Chan_2016 Long-range communication between different functional sites in the picornaviral 3C protein Chan, Yan M.; Moustafa, Ibrahim M.; Arnold, Jamie J.; Cameron, Craig E.; Boehr, David D. 2016 2016-04-01 PMC N PMC4824962 27050688.0 10.1016/j.str.2016.02.019 4ef635rc 0.386763 Stork_2011, Trobaugh_2017, Blank_2017, Pong_2011 Sun_D_2016, Shengjuler_2017, van_der_Linden_2014, Myllykoski_2017
490 UNKNOWN_1992 Identification of a subdomain of CENP-B that is necessary and sufficient for localization to the human centromere None 1992 1992-03-01 NONCOMM N PMC2289363 1740467.0 8as0ugi5 0.386763 Volmer_2010, UNKNOWN_1993, Connelly_1996, Blank_2017 UNKNOWN_1995, UNKNOWN_1993
491 Liu_W_2018 A unique intra-molecular fidelity-modulating mechanism identified in a viral RNA-dependent RNA polymerase Liu, Weichi; Shi, Xiaoling; Gong, Peng 2018 2018-11-16 COMM-USE N PMC6237809 30239956.0 10.1093/nar/gky848 ya0siivm 0.386323 Stork_2011, Pong_2011, Yasuda-Inoue_2013, den_Boon_2010, Kang_2009
492 Zeng_2004 Characterization of the 3a Protein of SARS-associated Coronavirus in Infected Vero E6 Cells and SARS Patients Zeng, Rong; Yang, Rui-Fu; Shi, Mu-De; Jiang, Man-Rong; Xie, You-Hua; Ruan, Hong-Qiang; Jiang, Xiao-Sheng; Shi, Lv; Zhou, Hu; Zhang, Lei; Wu, Xiao-Dong; Lin, Ying; Ji, Yong-Yong; Xiong, Lei; Jin, Yan; Dai, Er-Hei; Wang, Xiao-Yi; Si, Bin-Ying; Wang, Jin; Wang, Hong-Xia; Wang, Cui-E; Gan, Yong-Hua; Li, Yu-Chuan; Cao, Ju-Tian; Zuo, Jiang-Ping; Shan, Shi-Fang; Xie, En; Chen, Song-Hua; Jiang, Zhi-Qin; Zhang, Xi; Wang, Yuan; Pei, Gang; Sun, Bing; Wu, Jia-Rui 2004 2004-07-30 PMC N PMC7127270 15312778.0 10.1016/j.jmb.2004.06.016 me5ff1pb 0.386301 Volmer_2010, Shen_2005, Pong_2011, Kang_2009 Li_S_2016, Liu_M_2006, Wang_2009, Du_L_2007
493 Nelson_2005 Structure and Intracellular Targeting of the SARS-Coronavirus Orf7a Accessory Protein Nelson, Christopher A.; Pekosz, Andrew; Lee, Chung A.; Diamond, Michael S.; Fremont, Daved H. 2005 2005-01-31 PMC N PMC7125549 15642263.0 10.1016/j.str.2004.10.010 mdgjqtdd 0.386301 UNKNOWN_1987, Volmer_2010, UNKNOWN_1993, UNKNOWN_1993, Ivarsson_2012 Voß_D_2009, Kumar_2007, Chen_2009
494 Baruah_2020 Immunoinformatics‐aided identification of T cell and B cell epitopes in the surface glycoprotein of 2019‐nCoV Baruah, Vargab; Bose, Sujoy 2020 2020-03-03 PMC Y PMC7166505 32022276.0 10.1002/jmv.25698 5dle3e3c 0.386073 Kim_T_2005, Eisenlohr_1992, Kolls_2012, Hausmann_1997, Hansen_2018 Hua_R_2013, Li_L_2020, Sun_L_2014
495 Bzówka_2020 Molecular Dynamics Simulations Indicate the SARS-CoV-2 Mpro Is Not a Viable Target for Small-Molecule Inhibitors Design Maria Bzówka; Karolina Mitusińska; Agata Raczyńska; Aleksandra Samol; Jack Tuszyński; Artur Góra 2020 2020-03-02 BioRxiv Y 10.1101/2020.02.27.968008 mp3a9c9u 0.385307 Naito_2007, Kirillova_2009, Liu_Z_2008, Volmer_2010, Cheng_2012 Niu_C_2008, Hu_T_2009, Zhu_L_2011
496 Timani_2005 Nuclear/nucleolar localization properties of C-terminal nucleocapsid protein of SARS coronavirus Timani, Khalid Amine; Liao, Qingjiao; Ye, Linbai; Zeng, Yingchun; Liu, Jing; Zheng, Yi; Ye, Li; Yang, Xiaojun; Lingbao, Kong; Gao, Jingrong; Zhu, Ying 2005 2005-12-31 PMC Y PMC7114095 15992957.0 10.1016/j.virusres.2005.05.007 g5vcbn0n 0.385099 Volmer_2010, UNKNOWN_1987, UNKNOWN_1993, UNKNOWN_1993, UNKNOWN_1993 Guo_Y_2003, Zhang_2015, Yuan_2005, Ren_A_2004
497 Fan_Q_2017 Structure-Based Mutations in the Herpes Simplex Virus 1 Glycoprotein B Ectodomain Arm Impart a Slow-Entry Phenotype Fan, Qing; Kopp, Sarah J.; Connolly, Sarah A.; Longnecker, Richard 2017 2017-05-16 COMM-USE N PMC5433099 28512095.0 10.1128/mbio.00614-17 1v6nf28a 0.385019 Tallmadge_2008, Volmer_2010, Gomis-Rüth_2003, Pong_2011 Yang_2009, Someya_2008
498 Snead_2018 BAR scaffolds drive membrane fission by crowding disordered domains Wilton T. Snead; Wade F. Zeno; Grace Kago; Ryan W. Perkins; J Blair Richter; Chi Zhao; Eileen M. Lafer; Jeanne C. Stachowiak 2018 2018-03-04 BioRxiv N 10.1101/276147 drqseaaa 0.384514 Hurley_2014, Cosson_2013, UNKNOWN_1995, Ivarsson_2012 Snead_2019
499 Ruch_2012 A Single Polar Residue and Distinct Membrane Topologies Impact the Function of the Infectious Bronchitis Coronavirus E Protein Ruch, Travis R.; Machamer, Carolyn E. 2012 2012-05-03 COMM-USE N PMC3343006 22570613.0 10.1371/journal.ppat.1002674 tro7b4d0 0.384086 Volmer_2010, UNKNOWN_1987, Wodrich_2010, Greene_2012, Gomis-Rüth_2003 Voß_D_2009
500 Amacher_2020 Specificity in PDZ-peptide interaction networks: Computational analysis and review Amacher, Jeanine F.; Brooks, Lionel; Hampton, Thomas H.; Madden, Dean R. 2020 2020-12-31 None N PMC7138185 10.1016/j.yjsbx.2020.100022 gy8aata6 0.383424 Ivarsson_2012, Choudhury_2017, Cosson_2013, Taschuk_2020 Sato_2019, Liu_X_2019
501 Acker_2011 Mechanism for Noncompetitive Inhibition by Novel GluN2C/D N-Methyl-d-aspartate Receptor Subunit-Selective Modulators Acker, Timothy M.; Yuan, Hongjie; Hansen, Kasper B.; Vance, Katie M.; Ogden, Kevin K.; Jensen, Henrik S.; Burger, Pieter B.; Mullasseril, Praseeda; Snyder, James P.; Liotta, Dennis C.; Traynelis, Stephen F. 2011 2011-08-01 PMC N PMC3198917 21807990.0 10.1124/mol.111.073239 7tkbh9k3 0.382969 Ivarsson_2012, Smith_2003, UNKNOWN_1987, Chang_2000 Grazioso_2012, Manta_2009, Głowacka_2015, Tsoukala_2010
502 UNKNOWN_1994 Microsomal aldehyde dehydrogenase is localized to the endoplasmic reticulum via its carboxyl-terminal 35 amino acids None 1994 1994-09-02 NONCOMM N PMC2290952 8089174.0 90t1m430 0.381549 UNKNOWN_1993, UNKNOWN_1987, Wang_2013, UNKNOWN_1993, UNKNOWN_1993 Faaberg_1996, UNKNOWN_1995, UNKNOWN_1996, Niemann_1982
503 Mou_C_2019 Identification of Nuclear Localization Signals in the ORF2 Protein of Porcine Circovirus Type 3 Mou, Chunxiao; Wang, Minmin; Pan, Shuonan; Chen, Zhenhai 2019 2019-11-22 COMM-USE N PMC6950156 31766638.0 10.3390/v11121086 rbjkugw4 0.380209 Luytjes_1988, Volmer_2010, UNKNOWN_1993, UNKNOWN_1987 Guo_Y_2003
504 Xia_S_2019 A pan-coronavirus fusion inhibitor targeting the HR1 domain of human coronavirus spike Xia, Shuai; Yan, Lei; Xu, Wei; Agrawal, Anurodh Shankar; Algaissi, Abdullah; Tseng, Chien-Te K.; Wang, Qian; Du, Lanying; Tan, Wenjie; Wilson, Ian A.; Jiang, Shibo; Yang, Bei; Lu, Lu 2019 2019-04-10 NONCOMM N PMC6457931 30989115.0 10.1126/sciadv.aav4580 3c5ab73l 0.380209 Naito_2007, Volmer_2010, Ban_J_2018, Pong_2011, Berkhout_2006 Xia_S_2019, Elshabrawy_2012, Chen_2017, Veiga_2006
505 Satoh_2011 Screening and identification of T helper 1 and linear immunodominant antibody-binding epitopes in the spike 2 domain and the nucleocapsid protein of feline infectious peritonitis virus Satoh, Ryoichi; Furukawa, Tomoko; Kotake, Masako; Takano, Tomomi; Motokawa, Kenji; Gemma, Tsuyoshi; Watanabe, Rie; Arai, Setsuo; Hohdatsu, Tsutomu 2011 2011-02-17 PMC N PMC7115570 21216312.0 10.1016/j.vaccine.2010.12.106 455g55w0 0.380153 Okda_2017, Volmer_2010, Zeng_2004, Yang_2010, Callison_1999 Takano_2014, Hohdatsu_1991
506 York_2005 Genetic analysis of heptad-repeat regions in the G2 fusion subunit of the Junín arenavirus envelope glycoprotein York, Joanne; Agnihothram, Sudhakar S.; Romanowski, Victor; Nunberg, Jack H. 2005 2005-12-20 PMC N 16169032.0 10.1016/j.virol.2005.08.030 t5v2sjus 0.379850 UNKNOWN_1987, Volmer_2010, Chang_2000, UNKNOWN_1993, Yang_2012
507 Yang_2020 Cryo-EM analysis of a feline coronavirus spike protein reveals a unique structure and camouflaging glycans Yang, Tzu-Jing; Chang, Yen-Chen; Ko, Tzu-Ping; Draczkowski, Piotr; Chien, Yu-Chun; Chang, Yuan-Chih; Wu, Kuen-Phon; Khoo, Kay-Hooi; Chang, Hui-Wen; Hsu, Shang-Te Danny 2020 2020-01-03 None N PMC6983407 31900356.0 10.1073/pnas.1908898117 ddh4wym7 0.379606 Volmer_2010, Gomis-Rüth_2003, Pong_2011, Callison_1999, den_Boon_2010 Walls_2016, Effantin_2016, Walls_2016
508 Assadi-Porter_2008 Efficient and rapid protein expression and purification of small high disulfide containing sweet protein brazzein in E. coli Assadi-Porter, Fariba; Patry, Sammy; Markley, John L. 2008 2008-04-01 PMC N PMC2374762 18221889.0 10.1016/j.pep.2007.11.009 pjbgwyd8 0.379262 Ivarsson_2012, UNKNOWN_1987, Kuo_D_2011, Yang_2012, Chang_2000 Eshaghi_2005, Loa_C_2004
509 Lee-Huang_2007 Discovery of small-molecule HIV-1 fusion and integrase inhibitors oleuropein and hydroxytyrosol: Part I. Integrase inhibition Lee-Huang, Sylvia; Huang, Philip Lin; Zhang, Dawei; Lee, Jae Wook; Bao, Ju; Sun, Yongtao; Chang, Young-Tae; Zhang, John; Huang, Paul Lee 2007 2007-03-23 None N PMC2790717 17275783.0 10.1016/j.bbrc.2007.01.071 19qg6uji 0.379248 Pong_2011, Gomis-Rüth_2003, Kang_2009, Stork_2011, UNKNOWN_1987 Zhu_X_2015, Ashkenazi_2012, Grazioso_2012, van_der_Linden_2014
510 Rao_Z_2007 History of protein crystallography in China Rao, Zihe 2007 2007-02-27 PMC N PMC2435569 17327211.0 10.1098/rstb.2007.2032 k46ukxcr 0.379223 UNKNOWN_2013, UNKNOWN_2020, Griffiths_2010, UNKNOWN_2010 Onohara_2006, Ricagno_2006, Krauss_2012
511 Yoo_D_1991 The S2 subunit of the spike glycoprotein of bovine coronavirus mediates membrane fusion in insect cells Yoo, Dongwan; Parker, Michael D.; Babiuk, Lorne A. 1991 1991-01-31 PMC N PMC7131255 1984658.0 10.1016/0042-6822(91)90045-d fky0cm5e 0.379223 Shen_2005, Volmer_2010, Zeng_2004, Brunner_2010 Promkuntod_2013, Chang_2000, Piñón_1997, Bickerton_2018
512 Kuo_D_2011 A SUMO-GROUCHO Q DOMAIN FUSION PROTEIN: CHARACTERIZATION AND IN VIVO ULP1-MEDIATED CLEAVAGE Kuo, Dennis; Nie, Minghua; De Hoff, Peter; Chambers, Michael; Phillips, Martin; Hirsch, Ann M.; Courey, Albert J. 2011 2011-03-01 PMC N PMC3005967 20732424.0 10.1016/j.pep.2010.08.008 tcuxtki0 0.378942 Yan_J_2007, Choudhury_2017, UNKNOWN_1993, UNKNOWN_1987 Wang_2016, UNKNOWN_1996, Chen_1991, Piñón_1997
513 Chen_2012 Two Glycosylation Sites in H5N1 Influenza Virus Hemagglutinin That Affect Binding Preference by Computer-Based Analysis Chen, Wentian; Sun, Shisheng; Li, Zheng 2012 2012-06-14 COMM-USE N PMC3375263 22719948.0 10.1371/journal.pone.0038794 mfd3do15 0.378240 Volmer_2010, Callison_1999, UNKNOWN_1987, Rice_1992, Naito_2007 Xu_Q_2018, Voß_D_2009
514 Perrone_2015 Synthesis, Binding and Antiviral Properties of Potent Core-Extended Naphthalene Diimides Targeting the HIV-1 Long Terminal Repeat Promoter G-Quadruplexes Perrone, Rosalba; Doria, Filippo; Butovskaya, Elena; Frasson, Ilaria; Botti, Silvia; Scalabrin, Matteo; Lago, Sara; Grande, Vincenzo; Nadai, Matteo; Freccero, Mauro; Richter, Sara N. 2015 2015-11-24 PMC N PMC4690987 26599611.0 10.1021/acs.jmedchem.5b01283 egzy64jh 0.378188 Tosoni_2015, Stork_2011, Naito_2007, Pong_2011 Zhu_X_2015, Grazioso_2012, Tosoni_2015
515 Feng_2013 A Study of the Mechanism of the Chaperone-like Function of an scFv of Human Creatine Kinase by Computer Simulation Feng, Jianyu; Guo, Hong; Li, Sen; Lu, Tun 2013 2013-04-24 COMM-USE N PMC3634753 23637984.0 10.1371/journal.pone.0062147 psguw47w 0.378188 Ivarsson_2012, Smith_2003, Volmer_2010, Choudhury_2017, UNKNOWN_1987 Someya_2008, van_der_Linden_2014, Piñón_1997
516 Baquero_2013 Intermediate conformations during viral fusion glycoprotein structural transition Baquero, Eduard; Albertini, Aurélie A; Vachette, Patrice; Lepault, Jean; Bressanelli, Stéphane; Gaudin, Yves 2013 2013-04-30 PMC N 10.1016/j.coviro.2013.03.006 1e7dm3rx 0.377716 den_Boon_2010, Volmer_2010, Trobaugh_2017, Murakami_2012
517 Kotsiou_2011 Properties and Applications of Single-Chain Major Histocompatibility Complex Class I Molecules Kotsiou, Eleni; Brzostek, Joanna; Gould, Keith G. 2011 2011-08-01 PMC N PMC3125553 21126187.0 10.1089/ars.2010.3694 9bpd8e2h 0.377561 UNKNOWN_1986, Ivarsson_2012, Lavi_1988, Ji_W_2019 Kim_S_2012, Bryant_2002, van_Haren_2013
518 Yoo_D_1991 Structural analysis of the conformational domains involved in neutralization of bovine coronavirus using deletion mutants of the spike glycoprotein S1 subunit expressed by recombinant baculoviruses Yoo, Dongwan; Parker, Michael D.; Song, Jaeyoung; Cov, Graham J.; Deregt, Dirk; Babiuk, Lorne A. 1991 1991-07-31 PMC N PMC7131290 2053298.0 10.1016/0042-6822(91)90121-q kewcn5s7 0.377403 Volmer_2010, UNKNOWN_1987, Callison_1999, Zeng_2004, Chang_2000 Yoo_D_2001
519 Molodenskiy_2019 An automated data processing and analysis pipeline for transmembrane proteins in detergent solutions D. Molodenskiy; H. Mertens; D. Svergun 2019 2019-07-24 BioRxiv N 10.1101/714303 lhriiv4u 0.377113 DiMaio_2016, Montgomery_2004, Mendizabal-Ruiz_2018, Qi_Z_2018, Bocharov_2018 van_Dijk_2008, Voß_D_2009, Pandey_2016, Pedro_2019
520 Hall_2007 Protein microarray technology Hall, David A.; Ptacek, Jason; Snyder, Michael 2007 2007-01-31 None N PMC1828913 17126887.0 10.1016/j.mad.2006.11.021 1ty623bq 0.376559 Hu_S_2010, Ivarsson_2012, Sztuba-Solinska_2019, Sharon_2010 Hu_S_2010, Fasolo_2009, Berrade_2010
521 Li_A_2017 Structural basis of nectin-1 recognition by pseudorabies virus glycoprotein D Li, An; Lu, Guangwen; Qi, Jianxun; Wu, Lili; Tian, Kegong; Luo, Tingrong; Shi, Yi; Yan, Jinghua; Gao, George F. 2017 2017-05-19 COMM-USE N PMC5453625 28542478.0 10.1371/journal.ppat.1006314 8ddgc5z9 0.376135 Tallmadge_2008, Volmer_2010, Gnirß_2014, Rice_1992, Ban_J_2018 Sun_D_2016, van_der_Linden_2014
522 Wang_2016 Budded baculovirus particle structure revisited Wang, Qiushi; Bosch, Berend-Jan; Vlak, Just M.; van Oers, Monique M.; Rottier, Peter J.; van Lent, Jan W.M. 2016 2016-02-29 PMC N PMC7127228 26743500.0 10.1016/j.jip.2015.12.001 k40ef17d 0.376135 Volmer_2010, den_Boon_2010, Gomis-Rüth_2003, Narayanan_2003 Effantin_2016, Wulan_2015
523 Luan_2020 Spike protein recognition of mammalian ACE2 predicts the host range and an optimized ACE2 for SARS-CoV-2 infection Luan, Junwen; Lu, Yue; Jin, Xiaolu; Zhang, Leiliang 2020 2020-03-19 PMC Y 10.1016/j.bbrc.2020.03.047 96v185b2 0.375779 Volmer_2010, Trobaugh_2017, Berkhout_2006, Haasnoot_2010, UNKNOWN_1987 Hoffmann_2020, Ou_X_2020, Yuan_2004, Rockx_2020
524 Wu_K_2012 Mechanisms of Host Receptor Adaptation by Severe Acute Respiratory Syndrome Coronavirus Wu, Kailang; Peng, Guiqing; Wilken, Matthew; Geraghty, Robert J.; Li, Fang 2012 2012-01-30 PMC N PMC3308800 22291007.0 10.1074/jbc.m111.325803 c4q5gtw2 0.374615 Naito_2007, Trobaugh_2017, Berkhout_2006, Rice_1992, Volmer_2010 Niemeyer_2018, Rockx_2011, Widagdo_2019, Elshabrawy_2012
525 Fan_Y_2017 Structure of a pentameric virion-associated fiber with a potential role in Orsay virus entry to host cells Fan, Yanlin; Guo, Yusong R.; Yuan, Wang; Zhou, Ying; Holt, Matthew V.; Wang, Tao; Demeler, Borries; Young, Nicolas L.; Zhong, Weiwei; Tao, Yizhi J. 2017 2017-02-27 COMM-USE N PMC5344674 28241071.0 10.1371/journal.ppat.1006231 lu65iyw9 0.374595 Volmer_2010, Rice_1992, Stork_2011, den_Boon_2010, UNKNOWN_1987 Yang_2009
526 Tan_F_2011 Identification of non-essential regions in nucleocapsid protein of porcine reproductive and respiratory syndrome virus for replication in cell culture Tan, Feifei; Wei, Zuzhang; Li, Yanhua; Zhang, Rong; Zhuang, Jinshan; Sun, Zhi; Yuan, Shishan 2011 2011-06-30 PMC N PMC7114398 21440019.0 10.1016/j.virusres.2011.03.011 lopcb77c 0.374489 Luytjes_1988, Volmer_2010, Yang_2010, UNKNOWN_1987, Morikawa_1992
527 Antunes_2018 General Prediction of Peptide-MHC Binding Modes Using Incremental Docking: A Proof of Concept Antunes, Dinler A.; Devaurs, Didier; Moll, Mark; Lizée, Gregory; Kavraki, Lydia E. 2018 2018-03-12 COMM-USE N PMC5847594 29531253.0 10.1038/s41598-018-22173-4 f6vsr6ia 0.374489 Liu_Z_2008, Dawson_2007, Ivarsson_2012, Park_2012 van_der_Linden_2014, Yuan_2020, Park_2013
528 Webb_2018 Transmembrane Domains of Highly Pathogenic Viral Fusion Proteins Exhibit Trimeric Association In Vitro Webb, Stacy R.; Smith, Stacy E.; Fried, Michael G.; Dutch, Rebecca Ellis 2018 2018-04-18 COMM-USE N PMC5907656 29669880.0 10.1128/msphere.00047-18 nwbi0l4r 0.374088 Volmer_2010, Rice_1992, Compton_2014, den_Boon_2010, Gnirß_2014 Peisajovich_2000, Bissonnette_2009
529 Ziółkowska_2007 Crystallographic, thermodynamic, and molecular modeling studies of the mode of binding of oligosaccharides to the potent antiviral protein griffithsin Ziółkowska, Natasza E.; Shenoy, Shilpa R.; O'Keefe, Barry R.; McMahon, James B.; Palmer, Kenneth E.; Dwek, Raymond A.; Wormald, Mark R.; Wlodawer, Alexander 2007 2007-03-05 PMC N PMC7167611 17340634.0 10.1002/prot.21336 33qd2gpm 0.373509 Ivarsson_2012, Chan_2016, Gomis-Rüth_2003, Snyder_2005, Pong_2011
530 UNKNOWN_1993 Localization of TGN38 to the trans-Golgi network: involvement of a cytoplasmic tyrosine-containing sequence None 1993 1993-03-01 NONCOMM N PMC2119736 8436587.0 qt44izzh 0.373408 Wang_2013, UNKNOWN_1993, UNKNOWN_1995, UNKNOWN_1993 UNKNOWN_1995, Bryant_1997
531 Li_S_2006 Dissection of SARS Coronavirus Spike Protein into Discrete Folded Fragments Li, Shuang; Cai, Zhen; Chen, Yong; Lin, Zhanglin 2006 2006-08-31 PMC N PMC7128849 10.1016/s1007-0214(06)70222-x ikqsty4y 0.373408 Rice_1992, Stork_2011, Armesto_2007, UNKNOWN_1987, Vennema_1991 Du_L_2007, Wang_2009, Das_D_2006
532 Kuzmanovic_2008 A novel application of small-angle scattering techniques: Quality assurance testing of virus quantification technology Kuzmanovic, Deborah A.; Elashvili, Ilya; O’Connell, Catherine; Krueger, Susan 2008 2008-03-31 PMC N PMC7127611 10.1016/j.radphyschem.2007.10.004 cz3ce29n 0.373203 Takeda_2012, DiMaio_2016, Molodenskiy_2019, Arkin_2006 Guha_2011, Klaus_2016, Rossi_2015, Camarasa_2018
533 Digard_1989 Complex formation between influenza virus polymerase proteins expressed in Xenopus oocytes Digard, Paul; Blok, Vivian C.; Inglis, Stephen C. 1989 1989-07-31 PMC N PMC7131359 2741339.0 10.1016/0042-6822(89)90523-0 aik5bo6o 0.373001 Volmer_2010, Stork_2011, Narayanan_2003, Payne_2017 Nowak_1984, Tzeng_2006, Masters_1992
534 Yarmarkovich_2020 A SARS-CoV-2 Vaccination Strategy Focused on Population-Scale Immunity Mark Yarmarkovich; John M. Warrington; Alvin Farrel; John M. Maris 2020 2020-04-02 BioRxiv Y 10.1101/2020.03.31.018978 qq22z25y 0.373001 Volmer_2010, Naito_2007, Trobaugh_2017, Haasnoot_2010, Rice_1992 Escriou_2014, Niemeyer_2018, Jain_2020
535 Rodrigues_2014 Effect of pressure on refolding of recombinant pentameric cholera toxin B Rodrigues, D.; Farinha-Arcieri, L.E.; Ventura, A.M.; Chura-Chambi, R.M.; Malavasi, N.V.; Lemke, L.S.; Guimarães, J.S.; Ho, P.L.; Morganti, L. 2014 2014-03-10 PMC N PMC7114129 24445168.0 10.1016/j.jbiotec.2013.12.006 j580i7xm 0.372574 Gomis-Rüth_2003, Volmer_2010, UNKNOWN_1987, Ivarsson_2012, UNKNOWN_1993 Eshaghi_2005, Piñón_1997, van_der_Linden_2014, Singleton_2018
536 Tseng_2010 Self-assembly of Severe Acute Respiratory Syndrome Coronavirus Membrane Protein Tseng, Ying-Tzu; Wang, Shiu-Mei; Huang, Kuo-Jung; Lee, Amber I-Ru; Chiang, Chien-Cheng; Wang, Chin-Tien 2010 2010-02-12 PMC N PMC2857088 20154085.0 10.1074/jbc.m109.030270 bjdkod56 0.372574 Volmer_2010, UNKNOWN_1987, UNKNOWN_1995, UNKNOWN_1993, UNKNOWN_1993 Voß_D_2009, Zhang_2015, Chen_2009, Kanjanahaluethai_2007
537 Basu_2016 A structural perspective of RNA recognition by intrinsically disordered proteins Basu, Sushmita; Bahadur, Ranjit Prasad 2016 2016-05-26 PMC N PMC7079799 27229125.0 10.1007/s00018-016-2283-1 qk27wgmd 0.372019 Ivarsson_2012, Taschuk_2020, Dubois_2016, Trobaugh_2017 Järvelin_2016, Xia_H_2015, Singleton_2018, Shi_W_2020
538 Xia_P_2018 Binding determinants in the interplay between porcine aminopeptidase N and enterotoxigenic Escherichia coli F4 fimbriae Xia, Pengpeng; Quan, Guomei; Yang, Yi; Zhao, Jing; Wang, Yiting; Zhou, Mingxu; Hardwidge, Philip R.; Zhu, Jianzhong; Liu, Siguo; Zhu, Guoqiang 2018 2018-02-26 COMM-USE N PMC5828407 29482635.0 10.1186/s13567-018-0519-9 fx5vhz55 0.371872 Callison_1999, UNKNOWN_1987, Chang_2000, Okda_2017, Volmer_2010 Goetstouwers_2014, Ren_X_2010, Melkebeek_2012
539 Neuman_2011 A structural analysis of M protein in coronavirus assembly and morphology Neuman, Benjamin W.; Kiss, Gabriella; Kunding, Andreas H.; Bhella, David; Baksh, M. Fazil; Connelly, Stephen; Droese, Ben; Klaus, Joseph P.; Makino, Shinji; Sawicki, Stanley G.; Siddell, Stuart G.; Stamou, Dimitrios G.; Wilson, Ian A.; Kuhn, Peter; Buchmeier, Michael J. 2011 2011-04-30 None N PMC4486061 21130884.0 10.1016/j.jsb.2010.11.021 1eg1vf8b 0.371773 den_Boon_2010, Volmer_2010, Gomis-Rüth_2003, Narayanan_2003, Trobaugh_2017 Zhang_2015, Voß_D_2009, Popescu_2011
540 Uversky_2013 A decade and a half of protein intrinsic disorder: Biology still waits for physics Uversky, Vladimir N 2013 2013-04-29 PMC N PMC3690711 23553817.0 10.1002/pro.2261 a7hnuxy5 0.371682 Baranov_2009, Liu_Z_2008, Kirillova_2009, Staple_2005, UNKNOWN_2004 Uversky_2013, Peng_2013, Basu_2016
541 Chaudhuri_2011 Comparison of SARS and NL63 Papain-Like Protease Binding Sites and Binding Site Dynamics: Inhibitor Design Implications Chaudhuri, Rima; Tang, Sishi; Zhao, Guijun; Lu, Hui; Case, David A.; Johnson, Michael E. 2011 2011-11-25 None N PMC3397151 22004941.0 10.1016/j.jmb.2011.09.030 snldtqsn 0.370953 Smith_2003, Pong_2011, Ivarsson_2012, Chan_2016, Wang_2014 Zhu_L_2011, Wei_P_2006, Lei_J_2014, Lee_H_2015
542 Farhadi_2018 Computer-aided design of amino acid-based therapeutics: a review Farhadi, Tayebeh; Hashemian, Seyed MohammadReza 2018 2018-05-14 NONCOMM N PMC5958949 29795978.0 10.2147/dddt.s159767 q69f57el 0.370829 UNKNOWN_2004, Liu_Z_2008, Sztuba-Solinska_2019, Johnson_2018, Weber_2009 Joshi_2017, Robinson_2013, Wang_2013
543 Malik_2018 Monomeric Camelus dromedarius GSTM1 at low pH is structurally more thermostable than its native dimeric form Malik, Ajamaluddin; Khan, Javed M.; Alamery, Salman F.; Fouad, Dalia; Labrou, Nikolaos E.; Daoud, Mohamed S.; Abdelkader, Mohamed O.; Ataya, Farid S. 2018 2018-10-10 COMM-USE N PMC6179282 30303997.0 10.1371/journal.pone.0205274 rleyeuvp 0.370829 Ivarsson_2012, Chan_2016, Smith_2003, Guo_Y_2013, Gomis-Rüth_2003 Xie_J_2018, Rabbani_2013
544 Snead_2019 BAR scaffolds drive membrane fission by crowding disordered domains Snead, Wilton T.; Zeno, Wade F.; Kago, Grace; Perkins, Ryan W.; Richter, J Blair; Zhao, Chi; Lafer, Eileen M.; Stachowiak, Jeanne C. 2019 2019-02-04 None N PMC6363457 30504247.0 10.1083/jcb.201807119 agkmbszd 0.370619 Ivarsson_2012, Cosson_2013, UNKNOWN_1993, Snead_2018 Snead_2018
545 Li_C_2016 Conformational Flexibility of a Short Loop near the Active Site of the SARS-3CLpro is Essential to Maintain Catalytic Activity Li, Chunmei; Teng, Xin; Qi, Yifei; Tang, Bo; Shi, Hailing; Ma, Xiaomin; Lai, Luhua 2016 2016-02-16 COMM-USE N PMC4754693 26879383.0 10.1038/srep20918 n69iewmx 0.370619 Smith_2003, Gomis-Rüth_2003, Ivarsson_2012, UNKNOWN_1987 Someya_2008, Kanitz_2019, Wei_P_2006, Hu_T_2009
546 Ponnusamy_2008 Variable Oligomerization Modes in Coronavirus Non-structural Protein 9 Ponnusamy, Rajesh; Moll, Ralf; Weimar, Thomas; Mesters, Jeroen R.; Hilgenfeld, Rolf 2008 2008-11-28 PMC N PMC7094590 18694760.0 10.1016/j.jmb.2008.07.071 5kh7wgvx 0.370566 Pong_2011, Stork_2011, Volmer_2010, Gomis-Rüth_2003, Kang_2009 Kanjanahaluethai_2007, Voß_D_2009
547 Saha_2020 A virus that has gone viral: Amino acid mutation in S protein of Indian isolate of Coronavirus COVID-19 might impact receptor binding and thus infectivity Priyanka Saha; Arup Kumar Banerjee; Prem Prakash Tripathi; Amit Kumar Srivastava; Upasana Ray 2020 2020-04-11 BioRxiv Y 10.1101/2020.04.07.029132 pjcg8c7i 0.370014 Callison_1999, Luytjes_1988, Volmer_2010, Firth_2009, Naito_2007 Ng_O_2014, Niemeyer_2018
548 Indelicato_2016 Principles Governing the Self-Assembly of Coiled-Coil Protein Nanoparticles Indelicato, Giuliana; Wahome, Newton; Ringler, Philippe; Müller, Shirley A.; Nieh, Mu-Ping; Burkhard, Peter; Twarock, Reidun 2016 2016-02-01 PMC N PMC4744166 26840729.0 10.1016/j.bpj.2015.10.057 h84kr90p 0.370014 Ruiz-Herrero_2015, Qi_Z_2018, Ivarsson_2012, Kinjo_2012 Doll_2015, Indelicato_2017, Deng_2008
549 Callison_1999 Infectious Bronchitis Virus S2 Gene Sequence Variability May Affect S1 Subunit Specific Antibody Binding Callison, Scott Andrew; Jackwood, Mark W.; Hilt, Deborah Ann 1999 1999-01-01 PMC N PMC7089226 10541018.0 10.1023/a:1008179208217 o9jdt86j 0.369072 Volmer_2010, Luytjes_1988, Kusters_1989, Liu_P_2013 Ren_X_2008, Bickerton_2018, Lachheb_2019, Bank-Wolf_2014
550 Tambunan_2014 In silico modification of oseltamivir as neuraminidase inhibitor of influenza A virus subtype H1N1 Tambunan, Usman Sumo Friend; Rachmania, Rizky Archintya; Parikesit, Arli Aditya 2014 2014-12-12 PMC N PMC4389116 25859271.0 10.7555/jbr.29.20130024 3gz4dyie 0.368556 Yasui_2016, Lu_P_2016, Walker_2010, Hu_W_2013, Wrammert_2011 Grazioso_2012, Szűcs_2018, Hu_X_2016, Wei_P_2006
551 Kirillova_2009 Protein Domain Boundary Predictions: A Structural Biology Perspective Kirillova, Svetlana; Kumar, Suresh; Carugo, Oliviero 2009 2009-01-21 NONCOMM N PMC2669640 19401756.0 10.2174/1874091x00903010001 qrnhp1ek 0.368556 Lee_C_2017, Chang_2011, Qi_Z_2018, Liu_Z_2008 van_Dijk_2008, Choo_2009, RAMAKRISHNA_2015
552 Kreis_1986 Oligomerization is essential for transport of vesicular stomatitis viral glycoprotein to the cell surface Kreis, Thomas E.; Lodish, Harvey F. 1986 1986-09-12 PMC N PMC7133264 3019557.0 10.1016/0092-8674(86)90075-9 vt1sp5ai 0.368556 UNKNOWN_1995, Wang_2013, UNKNOWN_1993, Volmer_2010 Chen_1991, Melin_1995
553 Claridge_2009 A picornaviral loop-to-loop replication complex Claridge, Jolyon K.; Headey, Stephen J.; Chow, John Y.H.; Schwalbe, Martin; Edwards, Patrick J.; Jeffries, Cy M.; Venugopal, Hariprasad; Trewhella, Jill; Pascal, Steven M. 2009 2009-06-30 PMC N 19268541.0 10.1016/j.jsb.2009.02.010 fft1brwz 0.368507 Pong_2011, Stork_2011, Chan_2016, Kang_2009, Gorbalenya_1988
554 Shengjuler_2017 The RNA-Binding Site of Poliovirus 3C Protein Doubles as a Phosphoinositide-Binding Domain Shengjuler, Djoshkun; Chan, Yan Mei; Sun, Simou; Moustafa, Ibrahim M.; Li, Zhen-Lu; Gohara, David W.; Buck, Matthias; Cremer, Paul S.; Boehr, David D.; Cameron, Craig E. 2017 2017-12-05 None N PMC5728361 29211985.0 10.1016/j.str.2017.11.001 qgzgzjhr 0.368507 Volmer_2010, Ivarsson_2012, Chan_2016, Pong_2011, Stork_2011 Zhang_2015, Masters_1992
555 Gilman_2019 Structure of the Respiratory Syncytial Virus Polymerase Complex Gilman, Morgan S.A.; Liu, Cheng; Fung, Amy; Behera, Ishani; Jordan, Paul; Rigaux, Peter; Ysebaert, Nina; Tcherniuk, Sergey; Sourimant, Julien; Eléouët, Jean-François; Sutto-Ortiz, Priscila; Decroly, Etienne; Roymans, Dirk; Jin, Zhinan; McLellan, Jason S. 2019 2019-09-19 PMC N PMC7111336 31495574.0 10.1016/j.cell.2019.08.014 rvgcalip 0.367977 den_Boon_2010, Stork_2011, Pong_2011, Kang_2009, Meyerson_2017 Sun_D_2016
556 UNKNOWN_1986 Signal recognition particle-dependent membrane insertion of mouse invariant chain: a membrane-spanning protein with a cytoplasmically exposed amino terminus None 1986 1986-06-01 NONCOMM N PMC2114261 3458708.0 4sw25blb 0.367870 UNKNOWN_1993, Lipp_1986, Wang_2013, UNKNOWN_1992 Lipp_1986, UNKNOWN_1988, UNKNOWN_1995
557 Toor_2018 A Recurrent Mutation in Anaplastic Lymphoma Kinase with Distinct Neoepitope Conformations Toor, Jugmohit S.; Rao, Arjun A.; McShan, Andrew C.; Yarmarkovich, Mark; Nerli, Santrupti; Yamaguchi, Karissa; Madejska, Ada A.; Nguyen, Son; Tripathi, Sarvind; Maris, John M.; Salama, Sofie R.; Haussler, David; Sgourakis, Nikolaos G. 2018 2018-01-30 None N PMC5797543 29441070.0 10.3389/fimmu.2018.00099 a4i8tlag 0.367479 Hausmann_1997, Ivarsson_2012, Naito_2007, Wucherpfennig_1995, Kolls_2012 TANG_2015, Butler_2008, Di_Lullo_2019, Leu_S_2010
558 Ziegler_2018 Insights into DNA substrate selection by APOBEC3G from structural, biochemical, and functional studies Ziegler, Samantha J.; Liu, Chang; Landau, Mark; Buzovetsky, Olga; Desimmie, Belete A.; Zhao, Qi; Sasaki, Tomoaki; Burdick, Ryan C.; Pathak, Vinay K.; Anderson, Karen S.; Xiong, Yong 2018 2018-03-29 COMM-USE N PMC5875850 29596531.0 10.1371/journal.pone.0195048 rozjn5sr 0.367479 Gorbalenya_1988, Stork_2011, Pong_2011, Shi_S_2000 Deng_2019
559 Grossoehme_2009 Coronavirus N Protein N-Terminal Domain (NTD) Specifically Binds the Transcriptional Regulatory Sequence (TRS) and Melts TRS-cTRS RNA Duplexes Grossoehme, Nicholas E.; Li, Lichun; Keane, Sarah C.; Liu, Pinghua; Dann, Charles E.; Leibowitz, Julian L.; Giedroc, David P. 2009 2009-12-04 None N PMC2783395 19782089.0 10.1016/j.jmb.2009.09.040 62vgvjz0 0.367350 Pong_2011, Stork_2011, Yasuda-Inoue_2013, Kang_2009, Meyerson_2017 Bhullar_2014, Masters_1992
560 Mebs_2010 A simple procedure for the derivation of electron density based surfaces of drug-receptor complexes from a combination of X-ray data and theoretical calculations Mebs, Stefan; Lüth, Anja; Luger, Peter 2010 2010-08-15 PMC N PMC7125671 20634077.0 10.1016/j.bmc.2010.06.080 t6rnpnfc 0.366631 Ivarsson_2012, Qi_Z_2018, Kinjo_2012, Liu_Z_2008, Plewczyński_2008 Báez-Santos_2014, Becker_2016, Niu_C_2008, Li_G_2009
561 Lee_J_2016 The Roles of Histidines and Charged Residues as Potential Triggers of a Conformational Change in the Fusion Loop of Ebola Virus Glycoprotein Lee, Jinwoo; Gregory, Sonia M.; Nelson, Elizabeth A.; White, Judith M.; Tamm, Lukas K. 2016 2016-03-29 COMM-USE N PMC4811418 27023721.0 10.1371/journal.pone.0152527 w12kyzji 0.366254 UNKNOWN_1987, Gomis-Rüth_2003, Volmer_2010, Chang_2000, UNKNOWN_1993
562 Xia_S_2020 Inhibition of SARS-CoV-2 infection (previously 2019-nCoV) by a highly potent pan-coronavirus fusion inhibitor targeting its spike protein that harbors a high capacity to mediate membrane fusion Shuai Xia; Meiqin Liu; Chao Wang; Wei Xu; Qiaoshuai Lan; Siliang Feng; Feifei Qi; Linlin Bao; Lanying Du; Shuwen Liu; Chuan Qin; Fei Sun; Zhengli Shi; Yun Zhu; Shibo Jiang; Lu Lu 2020 2020-03-12 BioRxiv Y 10.1101/2020.03.09.983247 j5bepvvw 0.366229 Ban_J_2018, Volmer_2010, Compton_2014, Tallmadge_2008, Li_C_2014 Xia_S_2020, Zhu_Y_2020, Zheng_2020, Veiga_2006
563 Wang_2008 Endocytosis of the receptor-binding domain of SARS-CoV spike protein together with virus receptor ACE2 Wang, Shunxin; Guo, Feng; Liu, Kangtai; Wang, Hongliang; Rao, Shuan; Yang, Peng; Jiang, Chengyu 2008 2008-09-30 PMC N PMC7114441 18554741.0 10.1016/j.virusres.2008.03.004 wku1sd9k 0.365977 Ban_J_2018, Volmer_2010, Meyerson_2017, UNKNOWN_1987, Shen_2005 Du_L_2007, Wang_2009, He_Y_2004, Guillon_2008
564 Huang_2014 Dimeric Structure of Pseudokinase RNase L Bound to 2-5A Reveals a Basis for Interferon-Induced Antiviral Activity Huang, Hao; Zeqiraj, Elton; Dong, Beihua; Jha, Babal Kant; Duffy, Nicole M.; Orlicky, Stephen; Thevakumaran, Neroshan; Talukdar, Manisha; Pillon, Monica C.; Ceccarelli, Derek F.; Wan, Leo C.K.; Juang, Yu-Chi; Mao, Daniel Y.L.; Gaughan, Christina; Brinton, Margo A.; Perelygin, Andrey A.; Kourinov, Igor; Guarné, Alba; Silverman, Robert H.; Sicheri, Frank 2014 2014-01-23 None N PMC3974923 24462203.0 10.1016/j.molcel.2013.12.025 vc2ketxd 0.365977 Ivarsson_2012, Smith_2003, Blank_2017, Choudhury_2017, Gorbalenya_1988 Brandmann_2015
565 Wang_2010 Potential Aggregation-Prone Regions in Complementarity-Determining Regions of Antibodies and Their Contribution Towards Antigen Recognition: A Computational Analysis Wang, Xiaoling; Singh, Satish K.; Kumar, Sandeep 2010 2010-04-27 PMC N PMC7088613 20422267.0 10.1007/s11095-010-0143-5 buoay0gf 0.365780 Ivarsson_2012, Callison_1999, UNKNOWN_1987, Fricke_2019, Polverino_2017 Gordon_1991, Lollier_2011, Moulaei_2010
566 Phakthanakanok_2009 A computational analysis of SARS cysteine proteinase-octapeptide substrate interaction: implication for structure and active site binding mechanism Phakthanakanok, Krongsakda; Ratanakhanokchai, Khanok; Kyu, Khin Lay; Sompornpisut, Pornthep; Watts, Aaron; Pinitglang, Surapong 2009 2009-01-30 COMM-USE N PMC2648740 19208150.0 10.1186/1471-2105-10-s1-s48 8necodtw 0.365753 Ivarsson_2012, Chan_2016, UNKNOWN_1987, Polverino_2017, Callison_1999 Wei_P_2006, Zhu_L_2011, Niu_C_2008, Lee_T_2007
567 Li_Q_2006 TMV recombinants encoding fused foreign transmembrane domains to the CP subunit caused local necrotic response on susceptible tobacco Li, Qiaoli; Li, Mangmang; Jiang, Lubin; Zhang, Qingqi; Song, Rentao; Xu, Zhengkai 2006 2006-05-10 PMC N PMC7111735 16542697.0 10.1016/j.virol.2005.11.013 wdq02fb5 0.365697 Volmer_2010, UNKNOWN_1987, Rice_1992, Chang_2000 Gómez_1998, Brun_2014
568 Hsieh_2014 Characterization of the Ectodomain of the Envelope Protein of Dengue Virus Type 4: Expression, Membrane Association, Secretion and Particle Formation in the Absence of Precursor Membrane Protein Hsieh, Szu-Chia; Tsai, Wen-Yang; Nerurkar, Vivek R.; Wang, Wei-Kung 2014 2014-06-20 COMM-USE N PMC4065094 24950216.0 10.1371/journal.pone.0100641 gklyk0me 0.364981 Volmer_2010, UNKNOWN_1987, Maeda_2001, Okda_2017, Greene_2012 Eshaghi_2005
569 Odhar_2020 Molecular docking and dynamics simulation of FDA approved drugs with the main protease from 2019 novel coronavirus Odhar, Hasanain Abdulhameed; Ahjel, Salam Waheed; Albeer, Ali A.Mohammed Ali; Hashim, Ahmed Fadhil; Rayshan, Ali Mahmood; Humadi, Suhad Sami 2020 2020-03-31 COMM-USE Y PMC7147498 10.6026/97320630016236 8xi5k7f2 0.364569 Naito_2007, Ivarsson_2012, Liu_Z_2008, Volmer_2010, Polverino_2017
570 Zeng_2008 The nucleocapsid protein of SARS-associated coronavirus inhibits B23 phosphorylation Zeng, Yingchun; Ye, Linbai; Zhu, Shengli; Zheng, Hong; Zhao, Peng; Cai, Weijia; Su, Liya; She, Yinglong; Wu, Zhenghui 2008 2008-05-02 PMC N PMC7092856 18243139.0 10.1016/j.bbrc.2008.01.096 cwt7dswz 0.364569 Li_C_2013, Kang_2009, Meyerson_2017, Yasuda-Inoue_2013, Ban_J_2018 Du_L_2007, Zhang_2015, Ren_A_2004, Niemeyer_2018
571 Weissenhorn_2007 Virus membrane fusion Weissenhorn, Winfried; Hinz, Andreas; Gaudin, Yves 2007 2007-05-22 PMC N PMC7094569 17320081.0 10.1016/j.febslet.2007.01.093 c1j6p16s 0.364258 Modis_2013, Hurley_2014, UNKNOWN_1995, Hinz_2008, Hock_2014 Modis_2009, Modis_2013, Chang_2008, Hinz_2008
572 Koellhoffer_2014 Structural Characterization of the Glycoprotein GP2 Core Domain from the CAS Virus, a Novel Arenavirus-Like Species Koellhoffer, Jayne F.; Dai, Zhou; Malashkevich, Vladimir N.; Stenglein, Mark D.; Liu, Yanyun; Toro, Rafael; S. Harrison, Joseph; Chandran, Kartik; DeRisi, Joseph L.; Almo, Steven C.; Lai, Jonathan R. 2014 2014-04-03 None N PMC3951589 24333483.0 10.1016/j.jmb.2013.12.009 5j3ip4ts 0.364036 Gomis-Rüth_2003, Volmer_2010, Pong_2011, UNKNOWN_1987, Gnirß_2014 Koellhoffer_2012, Voß_D_2009
573 UNKNOWN_1995 Localization and targeting of the Saccharomyces cerevisiae Kre2p/Mnt1p alpha 1,2-mannosyltransferase to a medial-Golgi compartment None 1995 1995-11-02 NONCOMM N PMC2200012 7490293.0 q1jx0n0l 0.363399 UNKNOWN_1993, Wang_2013, UNKNOWN_1987, UNKNOWN_1993, UNKNOWN_1993 UNKNOWN_1996, UNKNOWN_1995, UNKNOWN_1992
574 Zemla_2011 StralSV: assessment of sequence variability within similar 3D structures and application to polio RNA-dependent RNA polymerase Zemla, Adam T; Lang, Dorothy M; Kostova, Tanya; Andino, Raul; Ecale Zhou, Carol L 2011 2011-06-02 COMM-USE N PMC3121648 21635786.0 10.1186/1471-2105-12-226 s7kzp795 0.362932 Chang_2011, Lee_C_2017, Qi_Z_2018, Saw_A_2019 Lang_2012, Scrima_2004
575 Tagliamonte_2020 Re-insights into origin and adaptation of SARS-CoV-2 Massimiliano S Tagliamonte; Nabil Adid; Giovanni Chillemi; Marco Salemi; Carla N Mavian 2020 2020-03-31 BioRxiv Y 10.1101/2020.03.30.015685 tevmxm59 0.362688 Volmer_2010, UNKNOWN_1987, Morikawa_1992, Chang_2000, Ivarsson_2012 Niemeyer_2018, Veiga_2006, Yuan_2004
576 Falzarano_2007 Ebola sGP—The first viral glycoprotein shown to be C-mannosylated Falzarano, Darryl; Krokhin, Oleg; Van Domselaar, Gary; Wolf, Kristin; Seebach, Jochen; Schnittler, Hans-Joachim; Feldmann, Heinz 2007 2007-11-10 PMC N PMC7103365 17659315.0 10.1016/j.virol.2007.06.015 c5jbv7t0 0.362185 Volmer_2010, Meyerson_2017, UNKNOWN_1987, Trobaugh_2017, Murakami_2012 Niemann_1982, Voß_D_2009, Zhang_2015
577 Lou_Z_2006 Crystal structures of Nipah and Hendra virus fusion core proteins Lou, Zhiyong; Xu, Yanhui; Xiang, Kehui; Su, Nan; Qin, Lan; Li, Xu; Gao, George F.; Bartlam, Mark; Rao, Zihe 2006 2006-09-15 PMC N PMC7164058 16972940.0 10.1111/j.1742-4658.2006.05459.x xdfou1t8 0.361815 Ryu_W_2017, Rice_1992, den_Boon_2010, Tallmadge_2008, Pong_2011
578 Wu_Q_2019 Peptides with 16R in S2 protein showed broad reactions with sera against different types of infectious bronchitis viruses Wu, Qi; Lin, Zhixian; Qian, Kun; Shao, Hongxia; Ye, Jianqiang; Qin, Aijian 2019 2019-09-30 PMC N PMC7117385 31500728.0 10.1016/j.vetmic.2019.108391 ioof1c9s 0.361679 Hu_W_2013, Okda_2017, Wrammert_2011, Montefiori_2007, Rice_1992 Andoh_2015, Xue_G_2013, Zou_N_2015
579 Galdiero_2008 Peptides containing membrane-interacting motifs inhibit herpes simplex virus type 1 infectivity Galdiero, Stefania; Falanga, Annarita; Vitiello, Mariateresa; D’Isanto, Marina; Cantisani, Marco; Kampanaraki, Aikaterini; Benedetti, Ettore; Browne, Helena; Galdiero, Massimiliano 2008 2008-09-30 PMC N 18572274.0 10.1016/j.peptides.2008.04.022 y4qrh521 0.361679 Tallmadge_2008, Compton_2014, Rice_1992, Gomis-Rüth_2003
580 Chen_2012 The Evolutionary Pattern of Glycosylation Sites in Influenza Virus (H5N1) Hemagglutinin and Neuraminidase Chen, Wentian; Zhong, Yaogang; Qin, Yannan; Sun, Shisheng; Li, Zheng 2012 2012-11-01 COMM-USE N PMC3486865 23133677.0 10.1371/journal.pone.0049224 newf1dqx 0.360613 Volmer_2010, UNKNOWN_1987, Callison_1999, Luytjes_1988 Voß_D_2009, Niemann_1982
581 Baxa_1996 Interactions of phage P22 tails with their cellular receptor, Salmonella O-antigen polysaccharide Baxa, U.; Steinbacher, S.; Miller, S.; Weintraub, A.; Huber, R.; Seckler, R. 1996 1996-10-31 PMC N 8889178.0 10.1016/s0006-3495(96)79402-x 5bd1hwz2 0.360490 UNKNOWN_1987, Volmer_2010, Chang_2000, Yang_2012, Callison_1999 Michalska_2018, Piñón_1997, Gordon_1991
582 Tsika_2019 Deciphering the Nucleotide and RNA Binding Selectivity of the Mayaro Virus Macro Domain Tsika, Aikaterini C.; Melekis, Efstathios; Tsatsouli, Sofia-Antigoni; Papageorgiou, Nicolas; Maté, Maria J.; Canard, Bruno; Coutard, Bruno; Bentrop, Detlef; Spyroulias, Georgios A. 2019 2019-05-31 PMC N PMC7094482 30998933.0 10.1016/j.jmb.2019.04.013 7egf4601 0.360490 den_Boon_2010, Pong_2011, Ryu_W_2017, Kang_2009, Rice_1992 Deng_2019, Sun_D_2016
583 Liu_H_2008 A new approach to the prediction of transmembrane structures Liu, HongDe; Wang, Rui; Lu, XiaoQuan; Chen, Jing; Liu, Xiuhui; Ding, Lan 2008 2008-05-23 PMC N PMC7088861 10.1007/s11434-008-0055-5 n10ia3j3 0.360332 UNKNOWN_1987, Qi_Z_2018, Saw_A_2019, Lee_C_2017, Wu_G_2005 Wang_2013, Cai_C_2006, RAMAKRISHNA_2015, Choo_2009
584 Mishra_2018 Insights into the Structural Basis of Antibody Affinity Maturation from Next-Generation Sequencing Mishra, Arjun K.; Mariuzza, Roy A. 2018 2018-02-01 COMM-USE N PMC5799246 29449843.0 10.3389/fimmu.2018.00117 e2jyexyf 0.359497 Trobaugh_2017, Berkhout_2006, Ivarsson_2012, Cambi_2005, Haasnoot_2010 Grimm_2015, Xiao_2009, Graham_2003
585 Hou_L_2014 Archaeal DnaG contains a conserved N-terminal RNA-binding domain and enables tailing of rRNA by the exosome Hou, Linlin; Klug, Gabriele; Evguenieva-Hackenberg, Elena 2014 2014-11-10 COMM-USE N PMC4227792 25326320.0 10.1093/nar/gku969 l1r416w7 0.358843 Yasuda-Inoue_2013, Gorbalenya_1988, Stork_2011, Blank_2017 Scrima_2004, Vasquez-Del_Carpio_2006
586 Chen_2016 Membrane protein assembly: two cytoplasmic phosphorylated serine sites of Vpu from HIV-1 affect oligomerization Chen, Chin-Pei; Lin, Meng-Han; Chan, Ya-Ting; Chen, Li-Chyong; Ma, Che; Fischer, Wolfgang B. 2016 2016-06-29 COMM-USE N PMC4926278 27353136.0 10.1038/srep28866 pbb247lp 0.358843 Volmer_2010, Greene_2012, Gomis-Rüth_2003, Kang_2009, UNKNOWN_1987 Faaberg_1996, Voß_D_2009
587 Maddamsetti_2018 Viral gain-of-function experiments uncover residues under diversifying selection in nature Rohan Maddamsetti; Daniel T. Johnson; Stephanie J. Spielman; Katherine L. Petrie; Debora S. Marks; Justin R. Meyer 2018 2018-01-03 BioRxiv N 10.1101/242495 gqhlw20n 0.358598 Wang_2018, Holmes_2007, Cullen_2009, Berkhout_2006, Rivas_2016 Maddamsetti_2018, Zhao_2018
588 Glantz-Gashai_2017 Virtual screening for potential inhibitors of Mcl-1 conformations sampled by normal modes, molecular dynamics, and nuclear magnetic resonance Glantz-Gashai, Yitav; Meirson, Tomer; Reuveni, Eli; Samson, Abraham O 2017 2017-06-19 NONCOMM N PMC5484510 28684899.0 10.2147/dddt.s133127 47srfqzl 0.358359 Naito_2007, Qi_Z_2018, Liu_Z_2008, Ivarsson_2012, Wang_2006 Tian_2012, Wang_2006, Zhu_X_2015
589 UNKNOWN_1995 trans-Golgi retention of a plasma membrane protein: mutations in the cytoplasmic domain of the asialoglycoprotein receptor subunit H1 result in trans-Golgi retention None 1995 1995-07-02 NONCOMM N PMC2199941 7615632.0 tedj3xxz 0.358220 UNKNOWN_1993, UNKNOWN_1993, UNKNOWN_1987, UNKNOWN_1993, Wang_2013 UNKNOWN_1991, UNKNOWN_1994
590 Johnson_2010 NMR Structure of the SARS-CoV Nonstructural Protein 7 in Solution at pH 6.5 Johnson, Margaret A.; Jaudzems, Kristaps; Wüthrich, Kurt 2010 2010-10-01 None N PMC3081601 20709084.0 10.1016/j.jmb.2010.07.043 h15192f4 0.358015 Guo_Y_2013, UNKNOWN_1987, Callison_1999, Gomis-Rüth_2003 Guarino_2005, Wei_P_2006
591 Jourdan_2012 Biophysical characterisation of the nucleocapsid protein from a highly pathogenic porcine reproductive and respiratory syndrome virus strain Jourdan, Stefanie S.; Osorio, Fernando A.; Hiscox, Julian A. 2012 2012-03-09 PMC N PMC7092862 22306009.0 10.1016/j.bbrc.2011.11.126 e0wfn9fz 0.358015 Meyerson_2017, Pong_2011, Stork_2011, Rice_1992, Kang_2009 Zhang_2015
592 Lin_Y_2017 Intrinsically disordered sequences enable modulation of protein phase separation through distributed tyrosine motifs Lin, Yuan; Currie, Simon L.; Rosen, Michael K. 2017 2017-11-17 COMM-USE N PMC5704491 28924037.0 10.1074/jbc.m117.800466 px0cz6qn 0.357946 Ivarsson_2012, Volmer_2010, UNKNOWN_1987, Smith_2003, Yang_2012 Järvelin_2016, Zhang_2015, Singleton_2018
593 Hung_2015 Amino Terminal Region of Dengue Virus NS4A Cytosolic Domain Binds to Highly Curved Liposomes Hung, Yu-Fu; Schwarten, Melanie; Hoffmann, Silke; Willbold, Dieter; Sklan, Ella H.; Koenig, Bernd W. 2015 2015-07-21 COMM-USE N PMC4517141 26197333.0 10.3390/v7072812 3uwiys4a 0.357766 Volmer_2010, Kang_2009, Pong_2011, Gomis-Rüth_2003, Stork_2011 Voß_D_2009, Kanjanahaluethai_2007, Popescu_2011
594 UNKNOWN_1993 The first membrane spanning region of the lamin B receptor is sufficient for sorting to the inner nuclear membrane None 1993 1993-02-01 NONCOMM N PMC2119546 8381121.0 3qi2llmr 0.357688 UNKNOWN_1993, UNKNOWN_1987, Wang_2013, UNKNOWN_1993 UNKNOWN_1993, UNKNOWN_1987, UNKNOWN_1991
595 Forni_2015 The heptad repeat region is a major selection target in MERS-CoV and related coronaviruses Forni, Diego; Filippi, Giulia; Cagliani, Rachele; De Gioia, Luca; Pozzoli, Uberto; Al-Daghri, Nasser; Clerici, Mario; Sironi, Manuela 2015 2015-09-25 COMM-USE N PMC4585914 26404138.0 10.1038/srep14480 9t7v7ipt 0.357627 Volmer_2010, Callison_1999, Auewarakul_2005, Li_D_2019, Naito_2007 Niemeyer_2018, Xia_S_2019, Widagdo_2019
596 Yamasaki_2019 ToGo-WF: prediction of RNA tertiary structures and RNA–RNA/protein interactions using the KNIME workflow Yamasaki, Satoshi; Amemiya, Takayuki; Yabuki, Yukimitsu; Horimoto, Katsuhisa; Fukui, Kazuhiko 2019 2019-03-06 PMC N PMC7088279 30840170.0 10.1007/s10822-019-00195-y 7cwp2xbw 0.357506 Stork_2011, Wang_2017, Wu_B_2009, Staple_2005, Pong_2011 Xia_H_2015, Järvelin_2016, Li_Z_2009
597 Hung_2006 Alignment using genetic programming with causal trees for identification of protein functions Hung, Chun-Min; Huang, Yueh-Min; Chang, Ming-Shi 2006 2006-09-01 PMC N PMC7117053 10.1016/j.na.2005.09.048 6l688krc 0.356449 Chang_2011, Qi_Z_2018, Saw_A_2019, Dai_Q_2012 Lee_B_2009, Neer_1987, Li_C_2018
598 CAO_S_2012 Statistical mechanical modeling of RNA folding: from free energy landscape to tertiary structural prediction CAO, Song; CHEN, Shi-Jie 2012 2012-01-01 PMC N PMC4902161 27293312.0 10.1007/978-3-642-25740-7_10 ywd88kmq 0.355709 Dawson_2007, Chowell_2017, DiMaio_2016, Webb_2014 Low_J_2010, Guo_Y_2013
599 Méndez_2015 Infectious Bursal Disease Virus VP5 Polypeptide: A Phosphoinositide-Binding Protein Required for Efficient Cell-to-Cell Virus Dissemination Méndez, Fernando; de Garay, Tomás; Rodríguez, Dolores; Rodríguez, José F. 2015 2015-04-17 COMM-USE N PMC4401730 25886023.0 10.1371/journal.pone.0123470 k8jzzqj0 0.355524 UNKNOWN_1987, Volmer_2010, Chang_2000, Pong_2011, Gomis-Rüth_2003
600 Ji_W_2017 Coordination between discrete Mitotic Arrest Deficient 1 (MAD1) domains is required for efficient mitotic checkpoint signaling Wenbin Ji; Yibo Luo; Ejaz Ahmad; Song-Tao Liu 2017 2017-11-01 BioRxiv N 10.1101/212704 i4yquw4k 0.355330 Blank_2017, Smith_2003, Yan_J_2007, Connelly_1996 Rodriguez-Rodriguez_2018, Bohnert_2013, Fehr_2012
601 Hrobowski_2005 Peptide inhibitors of dengue virus and West Nile virus infectivity Hrobowski, Yancey M; Garry, Robert F; Michael, Scott F 2005 2005-06-01 COMM-USE N PMC1177995 15927084.0 10.1186/1743-422x-2-49 zc491h8v 0.355304 Tallmadge_2008, Compton_2014, Volmer_2010, Pong_2011, Meyerson_2017 Koehler_2013, Veiga_2006, Mathieu_2017
602 Giron_2020 On the interactions of the receptor-binding domain of SARS-CoV-1 and SARS-CoV-2 spike proteins with monoclonal antibodies and the receptor ACE2 Carolina Corrêa Giron; Aatto Laaksonen; Fernando L. Barroso da Silva 2020 2020-04-10 BioRxiv Y 10.1101/2020.04.05.026377 4mv6qwpc 0.355099 Ivarsson_2012, Naito_2007, Callison_1999, Volmer_2010, Chan_2016 Joyce_2020, Zheng_2020, Elshabrawy_2012, Yuan_2020
603 Chang_2014 The SARS coronavirus nucleocapsid protein – Forms and functions Chang, Chung-ke; Hou, Ming-Hon; Chang, Chi-Fon; Hsiao, Chwan-Deng; Huang, Tai-huang 2014 2014-03-31 PMC N PMC7113676 24418573.0 10.1016/j.antiviral.2013.12.009 6fue84x6 0.354810 Pong_2011, den_Boon_2010, Stork_2011, Kang_2009, Volmer_2010 Zhang_2015, Chang_2005, Sun_D_2016
604 Azoitei_2014 Computational design of protein antigens that interact with the CDR H3 loop of HIV broadly neutralizing antibody 2F5 Azoitei, M.L.; Ban, Y.A.; Kalyuzhny, O.; Guenaga, J.; Schroeter, A.; Porter, J.; Wyatt, R.; Schief, W.R. 2014 2014-07-31 PMC N PMC4437801 25043744.0 10.1002/prot.24641 zgsqriz6 0.354155 Naito_2007, Ivarsson_2012, Irving_2010, Zhou_2007, Dey_A_2009 Hua_R_2013
605 Choy_2004 Synthetic Peptide Studies on the Severe Acute Respiratory Syndrome (SARS) Coronavirus Spike Glycoprotein: Perspective for SARS Vaccine Development Choy, Wai-Yan; Lin, Shu-Guang; Chan, Paul Kay-Sheung; Tam, John Siu-Lun; Lo, Y M Dennis; Chu, Ida Miu-Ting; Tsai, Sau-Na; Zhong, Ming-Qi; Fung, Kwok-Pui; Waye, Mary Miu-Yee; Tsui, Stephen Kwok-Wing; Ng, Kai-On; Shan, Zhi-Xin; Yang, Min; Wu, Yi-Long; Lin, Zhan-Yi; Ngai, Sai-Ming 2004 2004-06-01 PMC N PMC7108158 15044316.0 10.1373/clinchem.2003.029801 389t032s 0.353739 Zeng_2004, Okda_2017, Volmer_2010, Rice_1992, Hu_W_2013 Liu_R_2005, Elshabrawy_2012, Ng_O_2014
606 Wang_2018 A Comprehensive In Silico Method to Study the QSTR of the Aconitine Alkaloids for Designing Novel Drugs Wang, Ming-Yang; Liang, Jing-Wei; Mohamed Olounfeh, Kamara; Sun, Qi; Zhao, Nan; Meng, Fan-Hao 2018 2018-09-18 COMM-USE N PMC6225272 30231506.0 10.3390/molecules23092385 fewy8y4a 0.353452 Qi_Z_2018, Saw_A_2019, Dai_Q_2012, Chang_2011, Liu_Z_2008 Su_J_2014, Tran_2011
607 Cotelesage_2011 Hepatitis B Virus Genotype G forms core-like particles with unique structural properties Cotelesage, J J H; Osiowy, C; Lawrence, C; deVarennes, S L; Teow, S; Beniac, D R; Booth, T F 2011 2011-06-23 COMM-USE N PMC3116152 20546498.0 10.1111/j.1365-2893.2010.01330.x crolji1q 0.353452 Morikawa_1992, Volmer_2010, UNKNOWN_1987, Kang_2009, Luytjes_1988 Popescu_2011, Effantin_2016
608 Costin_2010 Structural Optimization and De Novo Design of Dengue Virus Entry Inhibitory Peptides Costin, Joshua M.; Jenwitheesuk, Ekachai; Lok, Shee-Mei; Hunsperger, Elizabeth; Conrads, Kelly A.; Fontaine, Krystal A.; Rees, Craig R.; Rossmann, Michael G.; Isern, Sharon; Samudrala, Ram; Michael, Scott F. 2010 2010-06-22 COMM-USE N PMC2889824 20582308.0 10.1371/journal.pntd.0000721 nj23h32n 0.353452 Volmer_2010, Pong_2011, Naito_2007, Kang_2009, Stork_2011 van_der_Linden_2014, Lee_C_2019, Yuan_2004, Robinson_2013
609 Vani_2009 Structural basis for the function of anti-idiotypic antibody in immune memory Vani, J.; Chatterjee, Jhinuk; Shaila, M.S.; Nayak, R.; Chandra, Nagasuma R. 2009 2009-03-31 PMC N PMC7126318 19157554.0 10.1016/j.molimm.2008.11.019 creoyran 0.352486 Volmer_2010, Ivarsson_2012, Hu_W_2013, Cheng_2012 Butler_2008
610 Stiasny_2007 Characterization of a Structural Intermediate of Flavivirus Membrane Fusion Stiasny, Karin; Kössl, Christian; Lepault, Jean; Rey, Félix A; Heinz, Franz X 2007 2007-02-16 COMM-USE N PMC1797619 17305426.0 10.1371/journal.ppat.0030020 hzl6wafm 0.351608 Gomis-Rüth_2003, Modis_2013, Hock_2014, Volmer_2010, UNKNOWN_1987 Yin_H_2006
611 Lorizate_2008 Interfacial pre-transmembrane domains in viral proteins promoting membrane fusion and fission Lorizate, Maier; Huarte, Nerea; Sáez-Cirión, Asier; Nieva, José L. 2008 2008-08-31 PMC N PMC7094410 18222166.0 10.1016/j.bbamem.2007.12.018 gpp73oll 0.351409 Weissenhorn_2013, Cosson_2013, Volmer_2010, den_Boon_2010, Gomis-Rüth_2003 Modis_2009, Modis_2013, Bissonnette_2009, Chang_2008
612 Qiao_1998 Specific Single or Double Proline Substitutions in the “Spring-loaded” Coiled-Coil Region of the Influenza Hemagglutinin Impair or Abolish Membrane Fusion Activity Qiao, Hui; Pelletier, Sandra L.; Hoffman, Lucas; Hacker, Jill; Armstrong, R. Todd; White, Judith M. 1998 1998-06-15 NONCOMM N PMC2132786 9628890.0 78fjem8s 0.350923 UNKNOWN_1987, Volmer_2010, Chang_2000, Yang_2012, UNKNOWN_1993 Someya_2008, UNKNOWN_1985
613 Chien_2013 Assembling an ion channel: ORF 3a from SARS‐CoV Chien, Tze‐Hsiang; Chiang, Ya‐Ling; Chen, Chin‐Pei; Henklein, Petra; Hänel, Karen; Hwang, Ing‐Shouh; Willbold, Dieter; Fischer, Wolfgang B. 2013 2013-06-22 PMC N PMC7161858 23483519.0 10.1002/bip.22230 ygzf1atu 0.350606 Choudhury_2011, David_2013, Abou-Hamdan_2018, Largo_2016, UNKNOWN_1987
614 Hinz_2008 Membrane Fusion Hinz, A.; Weissenhorn, W. 2008 2008-12-31 PMC N PMC7150352 10.1016/b978-012374410-4.00659-2 2gz0hg94 0.350606 Modis_2013, Hock_2014, Hurley_2014, UNKNOWN_1995 Weissenhorn_2007, Modis_2009, Modis_2013, Teissier_2007
615 Dolinnaya_2017 Structure, properties, and biological relevance of the DNA and RNA G-quadruplexes: Overview 50 years after their discovery Dolinnaya, N. G.; Ogloblina, A. M.; Yakubovskaya, M. G. 2017 2017-01-06 PMC N PMC7087716 28260487.0 10.1134/s0006297916130034 dhml7rlz 0.350505 Staple_2005, Trobaugh_2017, den_Boon_2010, Ivarsson_2012, Liu_Z_2008 Scrima_2004
616 Sanchez-Weatherby_2016 Crystal Dehydration in Membrane Protein Crystallography Sanchez-Weatherby, Juan; Moraes, Isabel 2016 2016-04-28 COMM-USE N PMC6126552 27553236.0 10.1007/978-3-319-35072-1_6 ssp499fe 0.350245 Zheng_2020, UNKNOWN_2004, Bocharov_2018, Liu_Z_2008 Walter_2006, Yadav_2005, Piotrowski_2007
617 Kusov_2015 A G-quadruplex-binding macrodomain within the “SARS-unique domain” is essential for the activity of the SARS-coronavirus replication–transcription complex Kusov, Yuri; Tan, Jinzhi; Alvarez, Enrique; Enjuanes, Luis; Hilgenfeld, Rolf 2015 2015-10-31 PMC N PMC4567502 26149721.0 10.1016/j.virol.2015.06.016 7lf2c2ra 0.350127 Pong_2011, UNKNOWN_1987, Volmer_2010, Kang_2009, Ivarsson_2012 Paesen_2015, Frick_2020
618 Yang_2010 Long range interaction networks in the function and fidelity of poliovirus RNA-dependent RNA polymerase studied by nuclear magnetic resonance Yang, Xiaorong; Welch, Jesse L.; Arnold, Jamie J.; Boehr, David D. 2010 2010-11-02 PMC N PMC2989882 20860410.0 10.1021/bi100833r 7fpantqv 0.350074 Morikawa_1992, Krause_1987, Chan_2016, Wu_G_2005, Volmer_2010 Shi_W_2020, YU_W_1995
619 Nemésio_2014 Membrane Interacting Regions of Dengue Virus NS2A Protein Nemésio, Henrique; Villalaín, José 2014 2014-08-13 PMC N PMC4148155 25119664.0 10.1021/jp504911r mzcvilbw 0.349627 Volmer_2010, UNKNOWN_1987, Ivarsson_2012, Cosson_2013, UNKNOWN_1993 Kanjanahaluethai_2007, Voß_D_2009, Guillén_2009, León-Juárez_2016
620 Wang_2011 Insights from Modeling the 3D Structure of New Delhi Metallo-β-Lactamse and Its Binding Interactions with Antibiotic Drugs Wang, Jing-Fang; Chou, Kuo-Chen 2011 2011-04-11 COMM-USE N PMC3073942 21494599.0 10.1371/journal.pone.0018414 qifqc89z 0.349541 Staple_2005, Ivarsson_2012, Callison_1999, Kirillova_2009 Grazioso_2012, Wang_2018, Wang_2013
621 UNKNOWN_1987 A specific transmembrane domain of a coronavirus E1 glycoprotein is required for its retention in the Golgi region None 1987 1987-09-01 NONCOMM N PMC2114809 2821010.0 eblj0qw6 0.348994 UNKNOWN_1993, UNKNOWN_1993, Chang_2000, Wang_2013 UNKNOWN_1991, Chang_2000
622 Deng_2016 Identification and Comparison of Receptor Binding Characteristics of the Spike Protein of Two Porcine Epidemic Diarrhea Virus Strains Deng, Feng; Ye, Gang; Liu, Qianqian; Navid, Muhammad Tariq; Zhong, Xiaoli; Li, Youwen; Wan, Chunyun; Xiao, Shaobo; He, Qigai; Fu, Zhen F.; Peng, Guiqing 2016 2016-02-23 COMM-USE N PMC4810246 26907329.0 10.3390/v8030055 7tzkttoz 0.348596 Tallmadge_2008, Yasui_2016, Lu_P_2016, Crowe_2014, Si_F_2020 Sun_Y_2018
623 Lin_S_2014 Structural Basis for the Identification of the N-Terminal Domain of Coronavirus Nucleocapsid Protein as an Antiviral Target Lin, Shing-Yen; Liu, Chia-Ling; Chang, Yu-Ming; Zhao, Jincun; Perlman, Stanley; Hou, Ming-Hon 2014 2014-02-24 PMC N PMC3983370 24564608.0 10.1021/jm500089r zehltghv 0.348351 Pong_2011, Yasuda-Inoue_2013, Shi_S_2005, Stork_2011, Li_C_2013
624 Zhou_2007 Structural definition of a conserved neutralization epitope on HIV-1 gp120 Zhou, Tongqing; Xu, Ling; Dey, Barna; Hessell, Ann J.; Van Ryk, Donald; Xiang, Shi-Hua; Yang, Xinzhen; Zhang, Mei-Yun; Zwick, Michael B.; Arthos, James; Burton, Dennis R.; Dimitrov, Dimiter S.; Sodroski, Joseph; Wyatt, Richard; Nabel, Gary J.; Kwong, Peter D. 2007 2007-02-01 None N PMC2584968 17301785.0 10.1038/nature05580 t1dpo0pl 0.347555 Dey_A_2009, Tallmadge_2008, Jiang_2006, Gnirß_2014 Anand_2019, Prabakaran_2007
625 Yu_M_2000 Characterization of Murine Coronavirus Neutralization Epitopes with Phage-Displayed Peptides Yu, Mathilde W.N.; Scott, Jamie K.; Fournier, Alain; Talbot, Pierre J. 2000 2000-05-25 None N PMC3987775 10814583.0 10.1006/viro.2000.0310 6moxjy9j 0.346932 Okda_2017, Rice_1992, Hu_W_2013, Nagesha_2001 Ádám_1987
626 Kim_Y_2018 Chaperna-Mediated Assembly of Ferritin-Based Middle East Respiratory Syndrome-Coronavirus Nanoparticles Kim, Young-Seok; Son, Ahyun; Kim, Jihoon; Kwon, Soon Bin; Kim, Myung Hee; Kim, Paul; Kim, Jieun; Byun, Young Ho; Sung, Jemin; Lee, Jinhee; Yu, Ji Eun; Park, Chan; Kim, Yeon-Sook; Cho, Nam-Hyuk; Chang, Jun; Seong, Baik L. 2018 2018-05-17 COMM-USE N PMC5966535 29868035.0 10.3389/fimmu.2018.01093 ds6x0yym 0.346636 Volmer_2010, Gomis-Rüth_2003, Stork_2011, Ivarsson_2012, Pong_2011 Yang_2018, Zhang_2015, Singleton_2018, Voß_D_2009
627 Wang_1995 A highly conserved epitope on the spike protein of infectious bronchitis virus Wang, L.; Parr, R. L.; King, D. J.; Collisson, E. W. 1995 1995-01-01 PMC N PMC7087072 8572941.0 10.1007/bf01323240 1bzc0j69 0.346358 Okda_2017, Volmer_2010, Callison_1999, Nagesha_2001, Hu_W_2013 Xing_2009, Hua_R_2013
628 Fleith_2018 IFIT3 and IFIT2/3 promote IFIT1-mediated translation inhibition by enhancing binding to non-self RNA Renata C Fleith; Harriet V Mears; Edward Emmott; Stephen C Graham; Daniel S Mansur; Trevor R Sweeney 2018 2018-02-08 BioRxiv N 10.1101/261776 j97gul0w 0.346318 Fleith_2018, Ban_J_2018, Yasuda-Inoue_2013, Blank_2017 Fleith_2018, Abbas_2013, Tsukamoto_2013
629 Conticello_2017 Biomaterials Made from Coiled-Coil Peptides Conticello, Vincent; Hughes, Spencer; Modlin, Charles 2017 2017-01-19 PMC N PMC7121611 28101873.0 10.1007/978-3-319-49674-0_17 6jgao58w 0.345955 UNKNOWN_2004, Johnson_2018, Weber_2009, Liu_Z_2008 Wu_Y_2016, Khajouei_2020, Doll_2015, Hainline_2017
630 Aydin_2013 Structural characterization of a fusion glycoprotein from a retrovirus that undergoes a hybrid 2‐step entry mechanism Aydin, Halil; Smrke, Brianna M.; Lee, Jeffrey E. 2013 2013-09-13 PMC N PMC7164122 24036886.0 10.1096/fj.13-232371 x8u74fvx 0.345174 Volmer_2010, Gomis-Rüth_2003, UNKNOWN_1987, Chang_2000, Murakami_2012
631 Zheng_2006 Insight into the activity of SARS main protease: Molecular dynamics study of dimeric and monomeric form of enzyme Zheng, Kewen; Ma, Guozheng; Zhou, Jinming; Zen, Min; Zhao, Wenna; Jiang, Yongjun; Yu, Qingsen; Feng, Jialiang 2006 2006-11-02 PMC N PMC7167853 17083088.0 10.1002/prot.21160 d2algx16 0.345001 Smith_2003, Ivarsson_2012, Guo_Y_2013, UNKNOWN_1987, Wang_2014
632 Modis_2013 Class II Fusion Proteins Modis, Yorgo 2013 2013-07-10 PMC N PMC7123093 23884590.0 10.1007/978-1-4614-7651-1_8 h12aozg2 0.344332 Modis_2009, UNKNOWN_1993, UNKNOWN_1987, UNKNOWN_1995 Modis_2009, Teissier_2007, Más_V_2013
633 Cavanagh_1986 Coronavirus IBV: Partial amino terminal sequencing of spike polypeptide S2 identifies the sequence Arg-Arg-Phe-Arg-Arg at the cleavage site of the spike precursor propolypeptide of IBV strains Beaudette and M41 Cavanagh, David; Davis, Philip J.; Pappin, Darryl J.C.; Binns, Matthew M.; Boursnell, Michael E.G.; Brown, T.David K. 1986 1986-02-28 PMC N PMC7133853 3010595.0 10.1016/0168-1702(86)90037-7 epdoa559 0.344313 Luytjes_1988, Abraham_1990, Callison_1999, Yang_2010, UNKNOWN_1987 Luytjes_1987, Abraham_1990
634 Piao_2016 Production of soluble truncated spike protein of porcine epidemic diarrhea virus from inclusion bodies of Escherichia coli through refolding Piao, Da-Chuan; Lee, Yoon-Seok; Bok, Jin-Duck; Cho, Chong-Su; Hong, Zhong-Shan; Kang, Sang-Kee; Choi, Yun-Jaie 2016 2016-10-31 PMC N 27260969.0 10.1016/j.pep.2016.05.018 vqu1ry66 0.343432 Okda_2017, Yang_2010, Callison_1999, Volmer_2010, Andoh_2015
635 Spaulding_2018 Functional role of the type 1 pilus rod structure in mediating host-pathogen interactions Spaulding, Caitlin N; Schreiber, Henry Louis; Zheng, Weili; Dodson, Karen W; Hazen, Jennie E; Conover, Matt S; Wang, Fengbin; Svenmarker, Pontus; Luna-Rico, Areli; Francetic, Olivera; Andersson, Magnus; Hultgren, Scott; Egelman, Edward H 2018 2018-01-18 COMM-USE N PMC5798934 29345620.0 10.7554/elife.31662 948ett42 0.343429 Volmer_2010, Callison_1999, Gomis-Rüth_2003, Ye_F_2018 Michalska_2018, Sun_D_2016, Van_Bost_2003
636 Xia_S_2020 Inhibition of SARS-CoV-2 (previously 2019-nCoV) infection by a highly potent pan-coronavirus fusion inhibitor targeting its spike protein that harbors a high capacity to mediate membrane fusion Xia, Shuai; Liu, Meiqin; Wang, Chao; Xu, Wei; Lan, Qiaoshuai; Feng, Siliang; Qi, Feifei; Bao, Linlin; Du, Lanying; Liu, Shuwen; Qin, Chuan; Sun, Fei; Shi, Zhengli; Zhu, Yun; Jiang, Shibo; Lu, Lu 2020 2020-03-30 COMM-USE Y PMC7118126 32231345.0 10.1038/s41422-020-0305-x ayi928ct 0.343372 Volmer_2010, Ban_J_2018, Compton_2014, Tallmadge_2008, Li_C_2013 Zhu_Y_2020, Xia_S_2020, Zheng_2020, Veiga_2006
637 Luytjes_1987 Primary structure of the glycoprotein E2 of coronavirus MHV-A59 and identification of the trypsin cleavage site Luytjes, Willem; Sturman, Lawrence S.; Bredenbee, Peter J.; Charite, Jeroen; van der Zeijst, Bernard A.M.; Horzinek, Marian C.; Spaan, Willy J.M. 1987 1987-12-31 PMC N PMC7130946 2825419.0 10.1016/0042-6822(87)90142-5 8ext7xa7 0.343149 Luytjes_1988, Abraham_1990, UNKNOWN_1987, UNKNOWN_1993, Tohya_1991 Piñón_1997
638 Mustafa_2019 Peptide-Protein Interaction Studies of Antimicrobial Peptides Targeting Middle East Respiratory Syndrome Coronavirus Spike Protein: An In Silico Approach Mustafa, Sabeena; Balkhy, Hanan; Gabere, Musa 2019 2019-07-01 COMM-USE N PMC6634063 31354813.0 10.1155/2019/6815105 w9a4gjv1 0.343149 Ivarsson_2012, Naito_2007, Qi_Z_2018, Chang_2011, Lee_C_2017 Guillén_2009, Li_S_2016, Choy_2004
639 Basak_2007 A Fluorogenic Peptide Containing the Processing Site of Human SARS Corona Virus S‐Protein: Kinetic Evaluation and NMR Structure Elucidation Basak, Ajoy; Mitra, Abhijit; Basak, Sarmistha; Pasko, Carolyn; Chrétien, Michel; Seaton, Pamela 2007 2007-04-30 PMC N PMC7162000 17471479.0 10.1002/cbic.200700007 aijn1g38 0.343077 UNKNOWN_1987, Volmer_2010, Ivarsson_2012, Smith_2003, Chan_2016
640 Narra_2008 Structural Features and the Persistence of Acquired Proteins Narra, Hema Prasad; Cordes, Matthew H. J.; Ochman, Howard 2008 2008-11-01 None N PMC3014317 18924109.0 10.1002/pmic.200800061 eri1nk2i 0.342632 Wang_2007, Volmer_2010, Francis_2016, Auewarakul_2005 Meulenberg_1995, Goldberg_1991
641 VanSlyke_2009 Conformational Maturation and Post-ER Multisubunit Assembly of Gap Junction Proteins VanSlyke, Judy K.; Naus, Christian C.; Musil, Linda S. 2009 2009-05-01 PMC N PMC2675624 19297523.0 10.1091/mbc.e09-01-0062 1gqqz9ta 0.342632 UNKNOWN_1995, Hurley_2014, Jonker_2018, Koval_2006, Wang_2013 Mades_2012, Fu_J_2000, UNKNOWN_1989
642 Desautels_2020 Rapid in silico design of antibodies targeting SARS-CoV-2 using machine learning and supercomputing Thomas Desautels; Adam Zemla; Edmond Lau; Magdalena Franco; Daniel Faissol 2020 2020-04-10 BioRxiv Y 10.1101/2020.04.03.024885 kg2j0dqy 0.342613 Naito_2007, Qi_Z_2018, Chang_2011, Lee_C_2017, Liu_Z_2008 Tang_2020, Poran_2020, Pinto_2020
643 Aik_W_2017 The N-terminal domains of FLASH and Lsm11 form a 2:1 heterotrimer for histone pre-mRNA 3’-end processing Aik, Wei Shen; Lin, Min-Han; Tan, Dazhi; Tripathy, Ashutosh; Marzluff, William F.; Dominski, Zbigniew; Chou, Chi-Yuan; Tong, Liang 2017 2017-10-11 COMM-USE N PMC5636114 29020104.0 10.1371/journal.pone.0186034 lg93okwg 0.342532 Blank_2017, Hou_L_2014, Ivanova_2015, Sato_2019 Scrima_2004
644 Surjit_2004 The nucleocapsid protein of the SARS coronavirus is capable of self-association through a C-terminal 209 amino acid interaction domain Surjit, Milan; Liu, Boping; Kumar, Purnima; Chow, Vincent T.K; Lal, Sunil K 2004 2004-05-14 PMC Y PMC7111157 15094372.0 10.1016/j.bbrc.2004.03.154 gcgc9g9x 0.342500 Volmer_2010, Pong_2011, Kang_2009, Rice_1992, Gorbalenya_1988 Kumar_2007, Niemeyer_2018, Du_L_2007
645 Pan_X_2020 Illumination of PRRSV Cytotoxic T Lymphocyte Epitopes by the Three-Dimensional Structure and Peptidome of Swine Lymphocyte Antigen Class I (SLA-I) Pan, Xiaocheng; Zhang, Nianzhi; Wei, Xiaohui; Jiang, Yinan; Chen, Rong; Li, Qirun; Liang, Ruiying; Zhang, Lijie; Ma, Lizhen; Xia, Chun 2020 2020-01-08 COMM-USE N PMC6960135 31969884.0 10.3389/fimmu.2019.02995 9815ikzg 0.342500 Hu_W_2013, Naito_2007, Volmer_2010, Okda_2017, Callison_1999 Jiang_2017, Shi_P_2020
646 Irving_2010 Exploring Peptide Mimics for the Production of Antibodies Against Discontinuous Protein Epitopes Irving, Melita B.; Craig, Lisa; Menendez, Alfredo; Gangadhar, Beechanahalli P.; Montero, Marinieve; van Houten, Nienke E.; Scott, Jamie K. 2010 2010-02-01 PMC N PMC2821332 20031219.0 10.1016/j.molimm.2009.10.015 ftf67ykd 0.342393 Okda_2017, Dey_A_2009, Saphire_2007, Hu_W_2013 Yu_M_2000, Ádám_1987, Hua_R_2013
647 Vajda_2018 Cryptic binding sites on proteins: definition, detection, and druggability Vajda, Sandor; Beglov, Dmitri; Wakefield, Amanda E; Egbert, Megan; Whitty, Adrian 2018 2018-06-30 PMC N PMC6088748 29800865.0 10.1016/j.cbpa.2018.05.003 1csbxa8f 0.342195 Liu_Z_2008, Kirillova_2009, Park_2012, Sztuba-Solinska_2019 Lamberto_2017, Becker_2016, Santiago_2017
648 Chen_2010 Discovery of anti‐SARS coronavirus drug based on molecular docking and database screening Chen, Hai‐Feng; Yao, Jian‐Hua; Sun, Jing; Li, Qiang; Li, Feng; Fan, Bo‐Tao; Yuan, Shen‐Gang 2010 2010-08-26 PMC N PMC7162226 10.1002/cjoc.20040220825 go2tsomq 0.342195 Naito_2007, Callison_1999, Staple_2005, Pong_2011, Stewart_2016
649 Martín_Alonso_1992 Antigenic structure of transmissible gastroenteritis virus nucleoprotein Martín Alonso, J.M.; Balbín, M.; Garwes, D.J.; Enjuanes, L.; Gascón, S.; Parra, F. 1992 1992-05-31 PMC N PMC7130495 1373552.0 10.1016/0042-6822(92)90746-c gmcsbg9f 0.342167 Okda_2017, Nagesha_2001, Volmer_2010, UNKNOWN_1987, Luytjes_1988 Ádám_1987
650 Bartlam_2007 Structural proteomics of the SARS coronavirus: a model response to emerging infectious diseases Bartlam, Mark; Xu, Yuanyuan; Rao, Zihe 2007 2007-08-07 PMC N PMC7088133 17680348.0 10.1007/s10969-007-9024-5 08yraaz7 0.342167 Rice_1992, Trobaugh_2017, Wang_2018, Haasnoot_2010, Naito_2007 Niemeyer_2018, Bartlam_2005, Wang_2009, Tan_Y_2020
651 Barriga_2016 Inhibition of the Hantavirus Fusion Process by Predicted Domain III and Stem Peptides from Glycoprotein Gc Barriga, Gonzalo P.; Villalón-Letelier, Fernando; Márquez, Chantal L.; Bignon, Eduardo A.; Acuña, Rodrigo; Ross, Breyan H.; Monasterio, Octavio; Mardones, Gonzalo A.; Vidal, Simon E.; Tischler, Nicole D. 2016 2016-07-14 COMM-USE N PMC4945073 27414047.0 10.1371/journal.pntd.0004799 s0hfsxzb 0.341634 Volmer_2010, Gomis-Rüth_2003, UNKNOWN_1987, Compton_2014, Pong_2011 Peisajovich_2000, Chang_2000
652 Xiao_2003 The SARS-CoV S glycoprotein: expression and functional characterization Xiao, Xiaodong; Chakraborti, Samitabh; Dimitrov, Anthony S; Gramatikoff, Kosi; Dimitrov, Dimiter S 2003 2003-12-26 PMC N PMC7111010 14651994.0 10.1016/j.bbrc.2003.11.054 85if4mnu 0.341550 Volmer_2010, UNKNOWN_1987, Chang_2000, Ban_J_2018, Yang_2010 Chen_2009, Voß_D_2009, Ma_H_2008, Wang_2009
653 Lee_C_2019 An Effective Neutralizing Antibody Against Influenza Virus H1N1 from Human B Cells Lee, Cheng-Chung; Yang, Chih-Ya; Lin, Li-Ling; Ko, Tzu-Ping; Chang, Alarng Hsun-Lang; Chang, Stanley Shi-Chung; Wang, Andrew H.-J. 2019 2019-03-14 COMM-USE N PMC6418199 30872685.0 10.1038/s41598-019-40937-4 c2qdkz3o 0.341550 Lu_P_2016, Yasui_2016, Hu_W_2013, Volmer_2010, Tallmadge_2008 Xie_X_2015, Han_T_2011, Bushnell_2010
654 Ruiz_2018 Chicken GRIFIN: Structural characterization in crystals and in solution Ruiz, Federico M.; Gilles, Ulrich; Ludwig, Anna-Kristin; Sehad, Celia; Shiao, Tze Chieh; García Caballero, Gabriel; Kaltner, Herbert; Lindner, Ingo; Roy, René; Reusch, Dietmar; Romero, Antonio; Gabius, Hans-Joachim 2018 2018-03-31 PMC N PMC7115793 29248541.0 10.1016/j.biochi.2017.12.003 a4iu9qg6 0.341363 Ivarsson_2012, Volmer_2010, Qi_Z_2018, Chan_2016, UNKNOWN_1987 Buller_2012, Moulaei_2010, Myllykoski_2017
655 Zhang_2007 Nucleocapsid protein of SARS-CoV activates interleukin-6 expression through cellular transcription factor NF-κB Zhang, Xue; Wu, Kailang; Wang, Di; Yue, Xin; Song, Degui; Zhu, Ying; Wu, Jianguo 2007 2007-09-01 PMC N PMC7103332 17490702.0 10.1016/j.virol.2007.04.009 ep6xutcj 0.341063 Trobaugh_2017, Ban_J_2018, Haasnoot_2010, Kang_2009, Blank_2017 Liao_2005, Han_M_2008, Yan_X_2006, Fang_2012
656 Procko_2020 The sequence of human ACE2 is suboptimal for binding the S spike protein of SARS coronavirus 2 Erik Procko 2020 2020-03-17 BioRxiv Y 10.1101/2020.03.16.994236 jalijjmg 0.341063 Trobaugh_2017, Naito_2007, Rice_1992, Berkhout_2006, Ivarsson_2012 Elshabrawy_2012, Joyce_2020, Du_L_2007
657 Xu_W_2011 Screening of Random Peptide Library of Hemagglutinin from Pandemic 2009 A(H1N1) Influenza Virus Reveals Unexpected Antigenically Important Regions Xu, Wanghui; Han, Lu; Lin, Zhanglin 2011 2011-03-18 COMM-USE N PMC3060926 21437206.0 10.1371/journal.pone.0018016 d3a06n3f 0.341014 Volmer_2010, Hu_W_2013, Rice_1992, Okda_2017, Naito_2007 Han_T_2011, Shi_P_2020, Hua_R_2013
658 Kamiya_2016 Design: An assay based on single-polypeptide-chain heterodimeric A2AR/D2R and non-oligomerized fusions for in vivo analysis of their allosteric receptor-receptor interactions Toshio Kamiya; Takashi Masuko; Dasiel Oscar Borroto-Escuela; Haruo Okado; Hiroyasu Nakata 2016 2016-07-26 BioRxiv N 10.1101/065250 t3tm6f9p 0.340988 Ivarsson_2012, Smith_2003, Cambi_2005, UNKNOWN_1987, Chan_2016 Grazioso_2012, Zhao_2010, Thangapandian_2012
659 Zhong_2009 C-terminal domain of SARS-CoV main protease can form a 3D domain-swapped dimer Zhong, Nan; Zhang, Shengnan; Xue, Fei; Kang, Xue; Zou, Peng; Chen, Jiaxuan; Liang, Chao; Rao, Zihe; Jin, Changwen; Lou, Zhiyong; Xia, Bin 2009 2009-01-01 PMC N PMC2762595 19319935.0 10.1002/pro.76 3xc9y5mo 0.340824 UNKNOWN_1987, Ivarsson_2012, Smith_2003, Gomis-Rüth_2003, Sato_2019 Voß_D_2009, Tsai_2010
660 Li_X_2011 Two Distinct Conformations of a Rinderpest Virus Epitope Presented by Bovine Major Histocompatibility Complex Class I N*01801: a Host Strategy To Present Featured Peptides Li, Xin; Liu, Jun; Qi, Jianxun; Gao, Feng; Li, Qirun; Li, Xiaoying; Zhang, Nianzhi; Xia, Chun; Gao, George F. 2011 2011-03-30 None N PMC3126294 21450819.0 10.1128/jvi.00030-11 p3ytja2h 0.340399 Hausmann_1997, Volmer_2010, Wucherpfennig_1995, Eisenlohr_1992, Ivarsson_2012 Shi_P_2020, Wang_2012, Kim_S_2012
661 Chen_2005 Function of HAb18G/CD147 in Invasion of Host Cells by Severe Acute Respiratory Syndrome Coronavirus Chen, Zhinan; Mi, Li; Xu, Jing; Yu, Jiyun; Wang, Xianhui; Jiang, Jianli; Xing, Jinliang; Shang, Peng; Qian, Airong; Li, Yu; Shaw, Peter X.; Wang, Jianwei; Duan, Shumin; Ding, Jin; Fan, Chunmei; Zhang, Yang; Yang, Yong; Yu, Xiaoling; Feng, Qiang; Li, Biehu; Yao, Xiying; Zhang, Zheng; Li, Ling; Xue, Xiaoping; Zhu, Ping 2005 2005-03-01 PMC N PMC7110046 15688292.0 10.1086/427811 uy2dlamj 0.340187 Ban_J_2018, Greene_2012, Meyerson_2017, Kang_2009, Kumar_2016 Wang_2009, Han_M_2008, Shi_S_2006, Diemer_2008
662 Straus_2019 Ca2+ ions promote fusion of Middle East Respiratory Syndrome coronavirus with host cells and increase infectivity Marco R. Straus; Tiffany Tang; Alex L. Lai; Annkatrin Flegel; Miya Bidon; Jack H. Freed; Susan Daniel; Gary R. Whittaker 2019 2019-12-19 BioRxiv N 10.1101/2019.12.18.881391 qw2tsrxm 0.339999 Volmer_2010, UNKNOWN_1987, Ban_J_2018, Chang_2000, Meyerson_2017 Thornbrough_2016, Rabouw_2016
663 Krause_2013 Analytical use of multi-protein fluorescence resonance energy transfer to demonstrate membrane-facilitated interactions within cytokine receptor complexes Krause, Christopher D.; Izotova, Lara S.; Pestka, Sidney 2013 2013-10-01 PMC N PMC3770794 23769803.0 10.1016/j.cyto.2013.05.008 muvuqh16 0.339998 Volmer_2010, Jiang_2011, Ivarsson_2012, UNKNOWN_1993 Winkler_2019, Moulaei_2010, Shengjuler_2017, Chu_R_2014
664 Pimentel_2009 Peptide Nanoparticles as Novel Immunogens: Design and Analysis of a Prototypic Severe Acute Respiratory Syndrome Vaccine Pimentel, Tais A. P. F.; Yan, Zhe; Jeffers, Scott A.; Holmes, Kathryn V.; Hodges, Robert S.; Burkhard, Peter 2009 2009-01-01 None Y PMC2756483 19152635.0 10.1111/j.1747-0285.2008.00746.x tkzvtrxx 0.338795 Tallmadge_2008, Yasui_2016, Lu_P_2016, Volmer_2010, Hu_W_2013 Escriou_2014, Liu_S_2006, Kuate_2007
665 Zheng_2011 Insight into the Interaction of Metal Ions with TroA from Streptococcus suis Zheng, Beiwen; Zhang, Qiangmin; Gao, Jia; Han, Huiming; Li, Ming; Zhang, Jingren; Qi, Jianxun; Yan, Jinghua; Gao, George F. 2011 2011-05-18 COMM-USE N PMC3097204 21611125.0 10.1371/journal.pone.0019510 sa5snfby 0.338343 Ivarsson_2012, Chan_2016, Volmer_2010, UNKNOWN_1987, Smith_2003 Michalska_2018, Grazioso_2012, Kuban-Jankowska_2015
666 Yeung_2006 Severe acute respiratory syndrome coronavirus entry into host cells: Opportunities for therapeutic intervention Yeung, Kap‐Sun; Yamanaka, Gregory A.; Meanwell, Nicholas A. 2006 2006-03-06 PMC N PMC7168515 16521129.0 10.1002/med.20055 mt8aqu8j 0.338241 Volmer_2010, Meyerson_2017, Ban_J_2018, Kang_2009, UNKNOWN_1987
667 Kuo_L_2016 A key role for the carboxy-terminal tail of the murine coronavirus nucleocapsid protein in coordination of genome packaging Kuo, Lili; Koetzner, Cheri A.; Masters, Paul S. 2016 2016-07-31 PMC N PMC4884538 27105451.0 10.1016/j.virol.2016.04.009 pujlr8uf 0.337903 Stork_2011, Kang_2009, Pong_2011, Rice_1992, Narayanan_2003 Masters_1992
668 UNKNOWN_1986 Cytoplasmic domains of cellular and viral integral membrane proteins substitute for the cytoplasmic domain of the vesicular stomatitis virus glycoprotein in transport to the plasma membrane None 1986 1986-06-01 NONCOMM N PMC2114239 3011809.0 hw36sz5t 0.337789 UNKNOWN_1993, UNKNOWN_1987, UNKNOWN_1993, UNKNOWN_1993, Volmer_2010 UNKNOWN_1995, Faaberg_1996
669 Kim_Y_2018 Crystal structure of the natural anion-conducting channelrhodopsin GtACR1 Kim, Yoon Seok; Kato, Hideaki E.; Yamashita, Keitaro; Ito, Shota; inoue, Keiichi; Ramakrishnan, Charu; Fenno, Lief E.; Evans, Kathryn E.; Paggi, Joseph M.; Dror, Ron O.; Kandori, Hideki; Kobilka, Brian K.; Deisseroth, Karl 2018 2018-08-29 PMC N PMC6340299 30158696.0 10.1038/s41586-018-0511-6 lkts77ax 0.337605 Ivarsson_2012, Cosson_2013, Koval_2006, Liu_Z_2008 Myllykoski_2017, Vicente_2015
670 Flyak_2020 An ultralong CDRH2 in HCV neutralizing antibody demonstrates structural plasticity of antibodies against E2 glycoprotein Flyak, Andrew I; Ruiz, Stormy E; Salas, Jordan; Rho, Semi; Bailey, Justin R; Bjorkman, Pamela J 2020 2020-03-03 COMM-USE N PMC7064334 32125272.0 10.7554/elife.53169 ye3k61vt 0.337224 Dey_A_2009, Pong_2011, Hu_W_2013, Gomis-Rüth_2003 Elshabrawy_2012, Zhu_X_2015, Zhao_2014
671 Wu_G_2007 Prediction of mutations engineered by randomness in H5N1 hemagglutinins of influenza A virus Wu, G.; Yan, S. 2007 2007-11-02 PMC N PMC7088403 17973072.0 10.1007/s00726-007-0602-4 rx0os4ke 0.337006 Wu_G_2005, Qi_Z_2018, Chang_2011, Cheng_2012 Wu_G_2007, Wu_G_2006, Gutiérrez_2013, Deng_2019
672 Navratil_2020 The severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) envelope (E) protein harbors a conserved BH3-like motif Vincent Navratil; Loïc Lionnard; Sonia Longhi; Christophe Combet; Abdel Aouacheria 2020 2020-04-10 BioRxiv Y 10.1101/2020.04.09.033522 wolpnbxa 0.336385 Volmer_2010, Ban_J_2018, Li_C_2013, Kang_2009, Meyerson_2017 Rockx_2020, Thornbrough_2016
673 Zwick_2004 gp41: HIV's shy protein Zwick, Michael B; Saphire, Erica O; Burton, Dennis R 2004 2004-01-01 PMC N PMC7095992 14760422.0 10.1038/nm0204-133 7u6ap4g4 0.334749 Naito_2007, Berkhout_2006, Volmer_2010, Murakami_2012 Zhu_X_2015, Brandmann_2015
674 Xie_X_2012 Protein sequence analysis based on hydropathy profile of amino acids Xie, Xiao-li; Zheng, Li-fei; Yu, Ying; Liang, Li-ping; Guo, Man-cai; Song, John; Yuan, Zhi-fa 2012 2012-01-27 PMC N PMC3274743 22302429.0 10.1631/jzus.b1100052 g1ob16b9 0.334324 Saw_A_2019, Qi_Z_2018, Chang_2011, Dai_Q_2012 Das_J_2017, Godeny_1990
675 Ku_T_2019 Synthesis of distal and proximal fleximer base analogues and evaluation in the nucleocapsid protein of HIV-1 Ku, Therese; Lopresti, Natalie; Shirley, Matthew; Mori, Mattia; Marchant, Jan; Heng, Xiao; Botta, Maurizio; Summers, Michael F.; Seley-Radtke, Katherine L. 2019 2019-07-01 PMC N 31126822.0 10.1016/j.bmc.2019.05.019 7cm6m1ol 0.334195 Naito_2007, Berkhout_2006, Rice_1992, Bennasser_2012, Haasnoot_2010
676 Zhong_2020 CryoDRGN: Reconstruction of heterogeneous structures from cryo-electron micrographs using neural networks Ellen D. Zhong; Tristan Bepler; Bonnie Berger; Joseph H Davis 2020 2020-03-29 BioRxiv N 10.1101/2020.03.27.003871 oohx14kl 0.334126 Qi_Z_2018, Chang_2011, Liu_Z_2008, Montgomery_2004 Jonić_2016, Punjani_2020, Pfab_2020, DiMaio_2016
677 Xie_M_2009 A phage RNA-binding protein binds to a non-cognate structured RNA and stabilizes its core structure Xie, Mao-Hua; Wu, Qi-Jia; Jiang, Yan-Fei; Bao, Penghui; Zhang, Yi 2009 2009-01-09 PMC N PMC7117394 19000653.0 10.1016/j.bbrc.2008.10.160 job4854r 0.334095 Stork_2011, Pong_2011, Blank_2017, Gorbalenya_1988, Hou_L_2014 Masters_1992, Gopinath_2015
678 Sun_Z_2019 Developing Novel G-Quadruplex Ligands: From Interaction with Nucleic Acids to Interfering with Nucleic Acid–Protein Interaction Sun, Zhi-Yin; Wang, Xiao-Na; Cheng, Sui-Qi; Su, Xiao-Xuan; Ou, Tian-Miao 2019 2019-01-22 COMM-USE N PMC6384609 30678288.0 10.3390/molecules24030396 isvn3wji 0.334041 Taschuk_2020, Stork_2011, Trobaugh_2017, Ivarsson_2012 Scalabrin_2017, Scrima_2004, Pradeepkumar_2012
679 Milanetti_2020 In-Silico evidence for two receptors based strategy of SARS-CoV-2 Edoardo Milanetti; Mattia Miotto; Lorenzo Di Rienzo; Michele Monti; Giorgio Gosti; Giancarlo Ruocco 2020 2020-03-27 BioRxiv Y 10.1101/2020.03.24.006197 ob37jivi 0.333994 Qi_Z_2018, Chang_2011, Dai_Q_2012, Polverino_2017, Saw_A_2019 Zhang_2009, Yap_Y_2005, Niu_C_2008, Lee_H_2013
680 Li_W_2007 The S proteins of human coronavirus NL63 and severe acute respiratory syndrome coronavirus bind overlapping regions of ACE2 Li, Wenhui; Sui, Jianhua; Huang, I-Chueh; Kuhn, Jens H.; Radoshitzky, Sheli R.; Marasco, Wayne A.; Choe, Hyeryun; Farzan, Michael 2007 2007-10-25 None N PMC2693060 17631932.0 10.1016/j.virol.2007.04.035 p4kuno89 0.333972 Ban_J_2018, Li_C_2013, Meyerson_2017, Pong_2011 Liu_M_2006, Wang_2009
681 Álvarez_2010 The envelope protein of severe acute respiratory syndrome coronavirus interacts with the non-structural protein 3 and is ubiquitinated Álvarez, Enrique; DeDiego, Marta L.; Nieto-Torres, Jose L.; Jiménez-Guardeño, Jose M.; Marcos-Villar, Laura; Enjuanes, Luis 2010 2010-07-05 PMC N PMC7119183 20409569.0 10.1016/j.virol.2010.03.015 uwwabdqb 0.333934 Volmer_2010, Kang_2009, Ban_J_2018, Meyerson_2017 Chen_2009, Zhang_2015
682 Branza-Nichita_2002 Role of disulfide bond formation in the folding and assembly of the envelope glycoproteins of a pestivirus Branza-Nichita, Norica; Lazar, Catalin; Durantel, David; Dwek, Raymond A; Zitzmann, Nicole 2002 2002-08-16 PMC N PMC7111099 12163043.0 10.1016/s0006-291x(02)00907-5 tq5uff27 0.333934 Meyerson_2017, Greene_2012, Pong_2011, Gomis-Rüth_2003, Stork_2011 Voß_D_2009, Krey_2010
683 Hebditch_2020 protein-sol pKa: prediction of electrostatic frustration, with application to coronaviruses Max Hebditch; Jim Warwicker 2020 2020-04-22 BioRxiv N 10.1101/2020.04.21.053967 xwbjmvvj 0.333934 Ivarsson_2012, Langosch_2011, Kinjo_2012, Yang_2012, Smith_2003
684 Han_D_2006 Identification of critical determinants on ACE2 for SARS-CoV entry and development of a potent entry inhibitor Han, Dong P.; Penn-Nicholson, Adam; Cho, Michael W. 2006 2006-06-20 PMC Y PMC7111894 16510163.0 10.1016/j.virol.2006.01.029 v1mf5lhh 0.333916 Yang_2010, Ban_J_2018, Naito_2007, Li_C_2017, Tallmadge_2008 Haga_2010, Yuan_2004, Veiga_2006, Zhang_2009
685 Liu_C_2016 Using mutagenesis to explore conserved residues in the RNA-binding groove of influenza A virus nucleoprotein for antiviral drug development Liu, Chia-Lin; Hung, Hui-Chen; Lo, Shou-Chen; Chiang, Ching-Hui; Chen, I-Jung; Hsu, John T.-A.; Hou, Ming-Hon 2016 2016-02-26 COMM-USE N PMC4768256 26916998.0 10.1038/srep21662 4wjvykx7 0.333828 Pong_2011, Kang_2009, Meyerson_2017, Stork_2011, Volmer_2010 Masters_1992, Bhullar_2014, YU_W_1995
686 Yu_X_2015 Structural basis for the neutralization of MERS-CoV by a human monoclonal antibody MERS-27 Yu, Xiaojuan; Zhang, Senyan; Jiang, Liwei; Cui, Ye; Li, Dongxia; Wang, Dongli; Wang, Nianshuang; Fu, Lili; Shi, Xuanlin; Li, Ziqiang; Zhang, Linqi; Wang, Xinquan 2015 2015-08-18 COMM-USE N PMC4539535 26281793.0 10.1038/srep13133 47ovbto5 0.333737 Pong_2011, Ban_J_2018, UNKNOWN_1987, Gomis-Rüth_2003, Meyerson_2017 Chen_2017, Li_Y_2015, Elshabrawy_2012, Zhang_2018
687 Wang_2010 Molecular simulation study of the binding mechanism of [α-PTi(2)W(10)O(40)](7−) for its promising broad-spectrum inhibitory activity to FluV-A neuraminidase Wang, JianPing; Hu, DongHua; Su, ZhongMin 2010 2010-08-14 PMC N PMC7089260 10.1007/s11434-010-3271-8 5wieasp8 0.333663 Callison_1999, Ivarsson_2012, Smith_2003, Chan_2016, UNKNOWN_1987 Pahonțu_2015, Grazioso_2012, Yang_2010, Zhang_2017
688 Berry_2015 Human coronavirus OC43 3CL protease and the potential of ML188 as a broad-spectrum lead compound: Homology modelling and molecular dynamic studies Berry, Michael; Fielding, Burtram; Gamieldien, Junaid 2015 2015-04-28 COMM-USE N PMC4411765 25928480.0 10.1186/s12900-015-0035-3 26jg9g0b 0.331712 Naito_2007, Pong_2011, Kang_2009, Volmer_2010, Callison_1999 Wei_P_2006, Lin_C_2004
689 Roy_K_2015 Chapter 10 Other Related Techniques Roy, Kunal; Kar, Supratik; Das, Rudra Narayan 2015 2015-12-31 PMC N PMC7149793 10.1016/b978-0-12-801505-6.00010-7 a9q0tcgz 0.331682 Park_2012, Webb_2014, Liu_Z_2008, Sen_D_2018, Liou_2013 Ekins_2007, Plewczynski_2007, Mukherjee_2011, Zhang_2018
690 UNKNOWN_1991 A Golgi retention signal in a membrane-spanning domain of coronavirus E1 protein None 1991 1991-10-01 NONCOMM N PMC2289920 1655802.0 s4a8zs5a 0.331588 UNKNOWN_1987, UNKNOWN_1993, UNKNOWN_1993, Wang_2013, UNKNOWN_1993 UNKNOWN_1987, UNKNOWN_1995, Chen_1991, UNKNOWN_1993
691 Hubbs_2019 Kinetic Analysis of Bacteriophage Sf6 Binding to Outer Membrane Protein A Using Whole Virions Natalia B. Hubbs; Mareena M. Whisby-Pitts; Jonathan L. McMurry 2019 2019-01-02 BioRxiv N 10.1101/509141 ktds6nla 0.330950 Volmer_2010, UNKNOWN_1987, Pong_2011, Stork_2011, Ivarsson_2012
692 de_Melo_2013 NOA36 Protein Contains a Highly Conserved Nucleolar Localization Signal Capable of Directing Functional Proteins to the Nucleolus, in Mammalian Cells de Melo, Ivan S.; Jimenez-Nuñez, Maria D.; Iglesias, Concepción; Campos-Caro, Antonio; Moreno-Sanchez, David; Ruiz, Felix A.; Bolívar, Jorge 2013 2013-03-13 COMM-USE N PMC3596294 23516598.0 10.1371/journal.pone.0059065 0jx6mwiw 0.330747 Volmer_2010, UNKNOWN_1993, UNKNOWN_1992, UNKNOWN_1987 Someya_2008, Piñón_1997
693 Kabanova_2016 Platelet-derived growth factor-α receptor is the cellular receptor for human cytomegalovirus gHgLgO trimer Kabanova, Anna; Marcandalli, Jessica; Zhou, Tongqing; Bianchi, Siro; Baxa, Ulrich; Tsybovsky, Yaroslav; Lilleri, Daniele; Silacci-Fregni, Chiara; Foglierini, Mathilde; Fernandez-Rodriguez, Blanca Maria; Druz, Aliaksandr; Zhang, Baoshan; Geiger, Roger; Pagani, Massimiliano; Sallusto, Federica; Kwong, Peter D.; Corti, Davide; Lanzavecchia, Antonio; Perez, Laurent 2016 2016-06-06 PMC N PMC4918640 27573107.0 10.1038/nmicrobiol.2016.82 93fwt01n 0.330507 Volmer_2010, Compton_2014, Ban_J_2018, Trobaugh_2017, Greene_2012 Tolosa_2015, Rimstad_1995, Gabrilovac_2005
694 Rossmann_2011 Chapter 5 Future prospects Rossmann, Michael G.; Battisti, Anthony J.; Plevka, Pavel 2011 2011-12-31 PMC N 21501821.0 10.1016/b978-0-12-386507-6.00005-1 u0ycqelc 0.330507 DiMaio_2016, Subramaniam_2016, Montgomery_2004, Polverino_2017
695 Gopal_2017 Probing the antigenicity of hepatitis C virus envelope glycoprotein complex by high-throughput mutagenesis Gopal, Radhika; Jackson, Kelli; Tzarum, Netanel; Kong, Leopold; Ettenger, Andrew; Guest, Johnathan; Pfaff, Jennifer M.; Barnes, Trevor; Honda, Andrew; Giang, Erick; Davidson, Edgar; Wilson, Ian A.; Doranz, Benjamin J.; Law, Mansun 2017 2017-12-18 COMM-USE N PMC5749897 29253863.0 10.1371/journal.ppat.1006735 uphmqh8n 0.329995 Pong_2011, Volmer_2010, Gomis-Rüth_2003, Kang_2009, UNKNOWN_1987 Oleszak_1990, Krey_2010
696 Robertson_2004 The Structure of a Rigorously Conserved RNA Element within the SARS Virus Genome Robertson, Michael P; Igel, Haller; Baertsch, Robert; Haussler, David; Ares, Manuel; Scott, William G 2004 2004-12-28 COMM-USE N PMC539059 15630477.0 10.1371/journal.pbio.0030005 p7um7o87 0.329939 Pong_2011, Gorbalenya_1988, Wu_B_2009, Stork_2011, Rice_1992
697 Faaberg_1996 Membrane association of the C-terminal half of the open reading frame 1a protein of lactate dehydrogenase-elevating virus Faaberg, K. S.; Plagemann, P. G. W. 1996 1996-01-01 PMC N PMC7086564 8774692.0 10.1007/bf01718835 c8qcjve9 0.329695 UNKNOWN_1987, UNKNOWN_1993, UNKNOWN_1993, Luytjes_1988, Yang_2010 Piñón_1997
698 He_Y_2006 Identification and characterization of novel neutralizing epitopes in the receptor-binding domain of SARS-CoV spike protein: Revealing the critical antigenic determinants in inactivated SARS-CoV vaccine He, Yuxian; Li, Jingjing; Du, Lanying; Yan, Xuxia; Hu, Guangan; Zhou, Yusen; Jiang, Shibo 2006 2006-06-29 PMC N PMC7115380 16725238.0 10.1016/j.vaccine.2006.04.054 arrhvqwa 0.329629 Okda_2017, Hu_W_2013, Volmer_2010, UNKNOWN_1987, Zeng_2004 Elshabrawy_2012, Ng_O_2014
699 Zuwała_2015 The Nucleocapsid Protein of Human Coronavirus NL63 Zuwała, Kaja; Golda, Anna; Kabala, Wojciech; Burmistrz, Michał; Zdzalik, Michal; Nowak, Paulina; Kedracka-Krok, Sylwia; Zarebski, Mirosław; Dobrucki, Jerzy; Florek, Dominik; Zeglen, Sławomir; Wojarski, Jacek; Potempa, Jan; Dubin, Grzegorz; Pyrc, Krzysztof 2015 2015-02-20 COMM-USE N PMC4336326 25700263.0 10.1371/journal.pone.0117833 w4d45fue 0.328472 Volmer_2010, Li_C_2013, Kang_2009, Rice_1992, Shen_2005 Timani_2005, Zhang_2015
700 Doll_2015 Optimizing the design of protein nanoparticles as carriers for vaccine applications Doll, Tais A.P.F.; Neef, Tobias; Duong, Nha; Lanar, David E.; Ringler, Philippe; Müller, Shirley A.; Burkhard, Peter 2015 2015-10-31 None N PMC4587294 26051652.0 10.1016/j.nano.2015.05.003 mgi6aelt 0.328353 Conzelmann_1996, Liu_Y_2014, Naito_2007, Johnson_2018, Siridechadilok_2013 Dorosti_2019, Negahdaripour_2017, Bissati_2014
701 Lenstra_1992 Isolation of sequences from a random-sequence expression library that mimic viral epitopes Lenstra, Johannes A.; Erkens, Joannes H.F.; Langeveld, J.G.A.; Posthumus, Willem P.A.; Meloen, Rob H.; Gebauer, Fátima; Correa, Isabela; Enjuanes, Luis; Stanley, Keith K. 1992 1992-08-10 PMC N PMC7131437 1380046.0 10.1016/0022-1759(92)90136-h ory6dp6w 0.327956 Nagesha_2001, Luytjes_1988, Morikawa_1992, Okda_2017 Brun_2014, Nowak_1984
702 Li_S_2005 Characterization of BIV Env core: Implication for mechanism of BIV-mediated cell fusion Li, Shu; Zhu, Jieqing; Peng, Yu; Cui, Shanshan; Wang, Chunping; Gao, George F.; Tien, Po 2005 2005-04-08 PMC N PMC7117376 15737628.0 10.1016/j.bbrc.2005.01.160 rims73rl 0.327809 Tallmadge_2008, Ryu_W_2017, Rice_1992, Compton_2014 Case_2017
703 He_Y_2004 Receptor-binding domain of SARS-CoV spike protein induces highly potent neutralizing antibodies: implication for developing subunit vaccine He, Yuxian; Zhou, Yusen; Liu, Shuwen; Kou, Zhihua; Li, Wenhui; Farzan, Michael; Jiang, Shibo 2004 2004-11-12 PMC N PMC7092904 15474494.0 10.1016/j.bbrc.2004.09.106 a787fd1v 0.327654 Okda_2017, Zeng_2004, Ban_J_2018, Yang_2010, Hu_W_2013 Elshabrawy_2012, He_Y_2004
704 Zhou_2019 Structural definition of a neutralization epitope on the N-terminal domain of MERS-CoV spike glycoprotein Zhou, Haixia; Chen, Yingzhu; Zhang, Shuyuan; Niu, Peihua; Qin, Kun; Jia, Wenxu; Huang, Baoying; Zhang, Senyan; Lan, Jun; Zhang, Linqi; Tan, Wenjie; Wang, Xinquan 2019 2019-07-11 COMM-USE N PMC6624210 31296843.0 10.1038/s41467-019-10897-4 oj1re34k 0.327316 Ban_J_2018, Smith_2003, Ivarsson_2012, Gnirß_2014, Greene_2012 Chen_2017, Zhang_2018, Elshabrawy_2012
705 Shokhen_2009 Challenging a Paradigm: Theoretical Calculations of the Protonation State of the Cys25-His159 Catalytic Diad in Free Papain Shokhen, Michael; Khazanov, Netaly; Albeck, Amnon 2009 2009-12-01 PMC N PMC2767454 19688822.0 10.1002/prot.22516 h8qsila6 0.327316 Smith_2003, Ho_S_2009, Ivarsson_2012, Schlieker_2007, Someya_2008 Someya_2008, Kanitz_2019, Myllykoski_2017, Lee_G_2012
706 Liang_2019 N-Linked glycosylation of the membrane protein ectodomain regulates infectious bronchitis virus-induced ER stress response, apoptosis and pathogenesis Liang, Jia Qi; Fang, Shouguo; Yuan, Quan; Huang, Mei; Chen, Rui Ai; Fung, To Sing; Liu, Ding Xiang 2019 2019-05-31 PMC N PMC7112112 30852271.0 10.1016/j.virol.2019.02.017 yyh5isxj 0.327132 Volmer_2010, Ban_J_2018, Greene_2012, Kang_2009, Trobaugh_2017 Voß_D_2009, Zhang_2015, Vigerust_2011
707 Yoo_D_2001 A Single Amino Acid Change within Antigenic Domain II of the Spike Protein of Bovine Coronavirus Confers Resistance to Virus Neutralization Yoo, Dongwan; Deregt, Dirk 2001 2001-03-01 None N PMC96053 11238212.0 10.1128/cdli.8.2.297-302.2001 g33go9ot 0.327060 Okda_2017, Volmer_2010, Yang_2010, Nagesha_2001, Hu_W_2013 Hua_R_2013
708 Der_Vartanian_1994 Permissible peptide insertions surrounding the signal peptide-mature protein junction of the ClpG prepilin: CS31A fimbriae of Escherichia coli as carriers of foreign sequences Der Vartanian, Maurice; Méchin, Marie-Claire; Jaffeux, Bernard; Bertin, Yolande; Félix, Isabelle; Gaillard-Martinie, Brigitte 1994 1994-10-11 PMC N PMC7131889 7523252.0 10.1016/0378-1119(94)90229-1 i3mebqtq 0.326932 Morikawa_1992, Luytjes_1988, UNKNOWN_1987, Wurch_1991, Krause_1987
709 Gan_S_2014 Two Different Conformations in Hepatitis C Virus p7 Protein Account for Proton Transport and Dye Release Gan, Siok Wan; Surya, Wahyu; Vararattanavech, Ardcharaporn; Torres, Jaume 2014 2014-01-07 COMM-USE N PMC3883635 24409277.0 10.1371/journal.pone.0078494 e076c93q 0.326514 UNKNOWN_1987, Volmer_2010, Chang_2000, Gomis-Rüth_2003, UNKNOWN_1993 Wang_2013
710 Sun_Y_2018 Characterization of the interaction between recombinant porcine aminopeptidase N and spike glycoprotein of porcine epidemic diarrhea virus Sun, Yan-gang; Li, Rui; Jiang, Longguang; Qiao, Songlin; Zhi, Yubao; Chen, Xin-xin; Xie, Sha; Wu, Jiawei; Li, Xuewu; Deng, Ruiguang; Zhang, Gaiping 2018 2018-10-01 PMC N PMC7112428 29802920.0 10.1016/j.ijbiomac.2018.05.167 v09m2fzw 0.326204 Volmer_2010, Shen_2005, Si_F_2020, Stork_2011, Rice_1992 Eshaghi_2005, Oh_J_2014, Pulford_1991
711 Barocchi_2005 Cell entry machines: a common theme in nature? Barocchi, Michèle A.; Masignani, Vega; Rappuoli, Rino 2005 2005-03-10 PMC N PMC7097853 15759040.0 10.1038/nrmicro1131 i4znuzht 0.326011 Weissenhorn_2013, Hurley_2014, Hobman_1993, Jonker_2018 Wesolowski_2010, Fulcher_2011, Sze_C_2015, Regan_2013
712 Grant_2020 3D Models of glycosylated SARS-CoV-2 spike protein suggest challenges and opportunities for vaccine development Oliver C. Grant; David Montgomery; Keigo Ito; Robert J. Woods 2020 2020-04-09 BioRxiv Y 10.1101/2020.04.07.030445 rwlpkf7n 0.326011 Volmer_2010, Trobaugh_2017, Haasnoot_2010, Hobman_1993, Callison_1999 Voß_D_2009, Shajahan_2020, Watanabe_2020, Guillén_2009
713 García_Caballero_2016 Galectin-related protein: An integral member of the network of chicken galectins 1. From strong sequence conservation of the gene confined to vertebrates to biochemical characteristics of the chicken protein and its crystal structure García Caballero, Gabriel; Flores-Ibarra, Andrea; Michalak, Malwina; Khasbiullina, Nailya; Bovin, Nicolai V.; André, Sabine; Manning, Joachim C.; Vértesy, Sabine; Ruiz, Federico M.; Kaltner, Herbert; Kopitz, Jürgen; Romero, Antonio; Gabius, Hans-Joachim 2016 2016-10-31 None N PMC7127388 27268118.0 10.1016/j.bbagen.2016.06.001 nr8ytlkn 0.325057 Ivarsson_2012, Chang_2011, Qi_Z_2018, Krause_1987, UNKNOWN_1987 Zhang_2015, Tong_2009, Eshaghi_2005
714 Yuan_2005 Subcellular localization and membrane association of SARS-CoV 3a protein Yuan, Xiaoling; Li, Jianyong; Shan, Yajun; Yang, Zhen; Zhao, Zhenhu; Chen, Bo; Yao, Zhenyu; Dong, Bo; Wang, Shengqi; Chen, Jiapei; Cong, Yuwen 2005 2005-05-31 PMC N PMC7114198 15763150.0 10.1016/j.virusres.2005.01.001 g955zcm6 0.324854 Volmer_2010, Shen_2005, UNKNOWN_1987, UNKNOWN_1993 Voß_D_2009, Chen_2009, Ren_A_2004, Wang_2009
715 Makrynitsa_2019 Conformational plasticity of the VEEV macro domain is important for binding of ADP-ribose Makrynitsa, Garyfallia I.; Ntonti, Dioni; Marousis, Konstantinos D.; Birkou, Maria; Matsoukas, Minos-Timotheos; Asami, Sam; Bentrop, Detlef; Papageorgiou, Nicolas; Canard, Bruno; Coutard, Bruno; Spyroulias, Georgios A. 2019 2019-04-01 PMC N PMC7111667 30825649.0 10.1016/j.jsb.2019.02.008 euf4sv76 0.324854 Pong_2011, Stork_2011, Volmer_2010, Gorbalenya_1988, den_Boon_2010 Hu_X_2016
716 Ma_C_2014 Searching for an ideal vaccine candidate among different MERS coronavirus receptor-binding fragments—The importance of immunofocusing in subunit vaccine design Ma, Cuiqing; Wang, Lili; Tao, Xinrong; Zhang, Naru; Yang, Yang; Tseng, Chien-Te K; Li, Fang; Zhou, Yusen; Jiang, Shibo; Du, Lanying 2014 2014-10-21 None N PMC4194190 25240756.0 10.1016/j.vaccine.2014.08.086 wnwip3rs 0.324642 Hu_W_2013, Okda_2017, Volmer_2010, Pong_2011, Dey_A_2009 Tang_2015, Zhang_2015, Elshabrawy_2012, Li_Y_2015
717 Licitra_2013 Mutation in Spike Protein Cleavage Site and Pathogenesis of Feline Coronavirus Licitra, Beth N.; Millet, Jean K.; Regan, Andrew D.; Hamilton, Brian S.; Rinaldi, Vera D.; Duhamel, Gerald E.; Whittaker, Gary R. 2013 2013-07-23 PMC N PMC3713968 23763835.0 10.3201/eid1907.121094 eztw9tx6 0.324618 Lu_P_2016, Tallmadge_2008, Crowe_2014, Yasui_2016, Ryu_W_2017 Tekes_2016, Ehmann_2018, Bank-Wolf_2014
718 Henriques_2011 Modeling of the Toll-like receptor 3 and a putative Toll-like receptor 3 antagonist encoded by the African swine fever virus Henriques, Elsa S; Brito, Rui M M; Soares, Hugo; Ventura, Sónia; de Oliveira, Vivian L; Parkhouse, R Michael E 2011 2011-01-28 PMC N PMC3048410 21280117.0 10.1002/pro.554 7hucqcaj 0.324357 Ban_J_2018, Berkhout_2006, Leung_2012, Ivarsson_2012, Volmer_2010 Han_M_2014, Perales-Linares_2013
719 Czech_2019 Octa-repeat domain of the mammalian prion protein mRNA forms stable A-helical hairpin structure rather than G-quadruplexes Czech, Andreas; Konarev, Petr V.; Goebel, Ingrid; Svergun, Dmitri I.; Wills, Peter R.; Ignatova, Zoya 2019 2019-02-21 None N PMC6384910 30792490.0 10.1038/s41598-019-39213-2 xmgkpk0b 0.324164 Morikawa_1992, Atkins_1999, Pong_2011, Krause_1987, Guo_Y_2013 Marcheschi_2007, Marczinke_1998, Scrima_2004
720 Shaw_1986 Analogous amino acid sequences in myelin proteolipid and viral proteins Shaw, Shyh-Yu; Laursen, Richard A.; Lees, Marjorie B. 1986 1986-10-27 PMC N 2429866.0 10.1016/0014-5793(86)81502-2 5cwb5g3h 0.323981 Volmer_2010, Rice_1992, Compton_2014, Trobaugh_2017 Zhang_2015
721 Marblestone_2006 Comparison of SUMO fusion technology with traditional gene fusion systems: Enhanced expression and solubility with SUMO Marblestone, Jeffrey G.; Edavettal, Suzanne C.; Lim, Yiting; Lim, Peter; Zuo, Xun; Butt, Tauseef R. 2006 2006-01-01 PMC N PMC2242369 16322573.0 10.1110/ps.051812706 jj3wzojy 0.323705 Kuo_D_2011, Yan_J_2007, Volmer_2010, Choudhury_2017, UNKNOWN_1987 Kuo_D_2011, Wu_X_2008, Singh_2011, Butt_2005
722 Lo_M_2014 Evolution and Structural Organization of the C Proteins of Paramyxovirinae Lo, Michael K.; Søgaard, Teit Max; Karlin, David G. 2014 2014-02-25 COMM-USE N PMC3934983 24587180.0 10.1371/journal.pone.0090003 vnafx1ng 0.323705 Volmer_2010, UNKNOWN_1987, Callison_1999, Auewarakul_2005, Luytjes_1988 Zhang_2015
723 Mills_2007 Differential activation of polymorphisms of the formyl peptide receptor by formyl peptides Mills, John S. 2007 2007-09-30 None N PMC2094211 17644322.0 10.1016/j.bbadis.2007.06.001 3jqk6ffb 0.323529 UNKNOWN_1987, Ban_J_2018, Yang_2010, Volmer_2010, Smith_2003 D’Errico_2009, Rabiet_2007, Wang_2013
724 Huber_2018 New Antimicrobial Potential and Structural Properties of PAFB: A Cationic, Cysteine-Rich Protein from Penicillium chrysogenum Q176 Huber, Anna; Hajdu, Dorottya; Bratschun-Khan, Doris; Gáspári, Zoltán; Varbanov, Mihayl; Philippot, Stéphanie; Fizil, Ádám; Czajlik, András; Kele, Zoltán; Sonderegger, Christoph; Galgóczy, László; Bodor, Andrea; Marx, Florentine; Batta, Gyula 2018 2018-01-29 None N PMC5788923 29379111.0 10.1038/s41598-018-20002-2 gr8jj6b5 0.323528 Volmer_2010, Wang_2007, Dolja_2006, Naito_2007, Berkhout_2006 Michalska_2018, Xu_S_2020
725 Zinzula_2012 dsRNA binding characterization of full length recombinant wild type and mutants Zaire ebolavirus VP35 Zinzula, Luca; Esposito, Francesca; Pala, Daniela; Tramontano, Enzo 2012 2012-03-31 PMC N PMC7114247 22289166.0 10.1016/j.antiviral.2012.01.005 5lyve83j 0.323346 Meyerson_2017, Ban_J_2018, Stork_2011, Kang_2009, Pong_2011 Terasaki_2016, Deng_2019, Case_2017
726 Xu_Q_2018 Sialic acid involves in the interaction between ovomucin and hemagglutinin and influences the antiviral activity of ovomucin Xu, Qi; Shan, Yuanyuan; Wang, Ning; Liu, Yaping; Zhang, Maojie; Ma, Meihu 2018 2018-11-30 PMC N PMC7124660 30071221.0 10.1016/j.ijbiomac.2018.07.186 wig4wdno 0.323297 Volmer_2010, Ban_J_2018, Yang_2010, Meyerson_2017, Gomis-Rüth_2003 Ceciliani_2004, Ishag_2016
727 Garry_2008 Proteomics computational analyses suggest that baculovirus GP64 superfamily proteins are class III penetrenes Garry, Courtney E; Garry, Robert F 2008 2008-02-18 COMM-USE N PMC2288602 18282283.0 10.1186/1743-422x-5-28 zu2zujgz 0.323156 Gorbalenya_1988, Crowe_2014, Ryu_W_2017, Tallmadge_2008 Garry_2009
728 Fu_J_2020 Identification of a Novel Linear B-Cell Epitope on the Nucleocapsid Protein of Porcine Deltacoronavirus Fu, Jiayu; Chen, Rui; Hu, Jingfei; Qu, Huan; Zhao, Yujia; Cao, Sanjie; Wen, Xintian; Wen, Yiping; Wu, Rui; Zhao, Qin; Ma, Xiaoping; Huang, Xiaobo 2020 2020-01-19 COMM-USE N PMC7013544 31963776.0 10.3390/ijms21020648 2r101v54 0.322959 Volmer_2010, Okda_2017, Callison_1999, Luytjes_1988, UNKNOWN_1987 Shi_P_2020, Jiang_2017, Xing_2009, Ti_J_2017
729 Modis_2009 Molecular Mechanisms of Flaviviral Membrane Fusion Modis, Yorgo; Nayak, Vinod 2009 2009-01-01 PMC N PMC7121066 10.1007/978-0-387-79840-0_12 0287r8k8 0.322541 Modis_2013, Weissenhorn_2013, UNKNOWN_1993, UNKNOWN_1987 Modis_2013, Más_V_2013, Chang_2008
730 Gruschke_2008 Peptides from the SARS-associated coronavirus as tags for protein expression and purification Gruschke, Steffi; Bußmann, Bianca M.; Reiche, Sven; Jassoy, Christian 2008 2008-10-31 PMC N PMC7129034 18565762.0 10.1016/j.pep.2008.04.011 nxwlb5fa 0.322126 Rice_1992, Nagesha_2001, Armesto_2007, Bickerton_2017 Loa_C_2004, Wang_2009, Eshaghi_2005, Li_S_2016
731 Low_J_2014 Structure and Dynamics of the HIV-1 Frameshift Element RNA Low, Justin\nT.; Garcia-Miranda, Pablo; Mouzakis, Kathryn D.; Gorelick, Robert J.; Butcher, Samuel E.; Weeks, Kevin M. 2014 2014-06-13 PMC N PMC4089884 24926888.0 10.1021/bi5004926 y6qcig5u 0.321952 Morikawa_1992, Ivarsson_2012, Brierley_1989, Gorbalenya_1988, Krause_1987 Marcheschi_2007, Marczinke_1998
732 Surya_2015 MERS coronavirus envelope protein has a single transmembrane domain that forms pentameric ion channels Surya, Wahyu; Li, Yan; Verdià-Bàguena, Carmina; Aguilella, Vicente M.; Torres, Jaume 2015 2015-04-02 PMC N PMC7114494 25733052.0 10.1016/j.virusres.2015.02.023 bzk5im1z 0.321263 Volmer_2010, Li_C_2013, UNKNOWN_1987, Kang_2009, Shen_2005 Niemeyer_2018, Guillén_2009, Narayanan_2015
733 Chen_2008 Residues on the Dimer Interface of SARS Coronavirus 3C-like Protease: Dimer Stability Characterization and Enzyme Catalytic Activity Analysis Chen, Shuai; Zhang, Jian; Hu, Tiancen; Chen, Kaixian; Jiang, Hualiang; Shen, Xu 2008 2008-01-07 PMC N PMC7109808 18182387.0 10.1093/jb/mvm246 m6iocvo7 0.320770 Smith_2003, Ivarsson_2012, Yang_2012, UNKNOWN_1987, Chan_2016 Wei_P_2006, Hu_T_2009, Someya_2008, Kanitz_2019
734 Wells_2020 Rigidity, normal modes and flexible motion of a SARS-CoV-2 (COVID-19) protease structure Stephen A. Wells 2020 2020-03-12 BioRxiv Y 10.1101/2020.03.10.986190 rzda8x62 0.320585 Dai_Q_2012, Qi_Z_2018, Wang_2006, Montgomery_2004, Liu_Z_2008 Hu_T_2009, Lee_T_2007, Niu_C_2008, Phakthanakanok_2009
735 Perrier_2019 The C-terminal domain of the MERS coronavirus M protein contains a trans-Golgi network localization signal Perrier, Anabelle; Bonnin, Ariane; Desmarets, Lowiese; Danneels, Adeline; Goffard, Anne; Rouillé, Yves; Dubuisson, Jean; Belouzard, Sandrine 2019 2019-08-09 PMC N PMC6768645 31399512.0 10.1074/jbc.ra119.008964 tjg0b18p 0.320390 Volmer_2010, UNKNOWN_1995, Wang_2013, UNKNOWN_1993, UNKNOWN_1987 Voß_D_2009, UNKNOWN_1991, Chen_1991
736 Pedro_2019 Smoothing membrane protein structure determination by initial upstream stage improvements Pedro, Augusto Quaresma; Queiroz, João António; Passarinha, Luís António 2019 2019-05-24 PMC N PMC7079970 31127356.0 10.1007/s00253-019-09873-1 3riv0oh3 0.320390 Liu_Z_2008, Qi_Z_2018, Chang_2011, Lee_C_2017, Valle_1988 Pandey_2016, Faaberg_1996, Voß_D_2009, UNKNOWN_1989
737 Zhang_2007 Estimating residue evolutionary conservation by introducing von Neumann entropy and a novel gap-treating approach Zhang, S.-W.; Zhang, Y.-L.; Pan, Q.; Cheng, Y.-M.; Chou, K.-C. 2007 2007-08-21 PMC N PMC7088136 17710364.0 10.1007/s00726-007-0586-0 7bh8222u 0.319688 Qi_Z_2018, Chang_2011, Dai_Q_2012, Feng_2010 Pessia_2015, Altschul_1991, Hilton_2018
738 Qiu_M_2005 Use of the COOH Portion of the Nucleocapsid Protein in an Antigen-Capturing Enzyme-Linked Immunosorbent Assay for Specific and Sensitive Detection of Severe Acute Respiratory Syndrome Coronavirus Qiu, Maofeng; Wang, Jin; Wang, Hongxia; Chen, Zeliang; Dai, Erhei; Guo, Zhaobiao; Wang, Xiaoyi; Pang, Xin; Fan, Baoxing; Wen, Jie; Wang, Jian; Yang, Ruifu 2005 2005-03-01 None N PMC1065208 15753261.0 10.1128/cdli.12.3.474-476.2005 xynnw3by 0.319510 Lee_H_2010, Tallmadge_2008, Paton_1991, Che_X_2005 Liu_G_2016, Saijo_2005, Xue_G_2013, Yuan_2009
739 Zoltick_1990 Mouse hepatitis virus ORF 2a is expressed in the cytosol of infected mouse fibroblasts Zoltick, Philip W.; Leibowitz, Julian L.; Oleszak, Emilia L.; Weiss, Susan R. 1990 1990-02-28 PMC N PMC7131050 2154893.0 10.1016/0042-6822(90)90114-7 hgjwn1l6 0.319510 UNKNOWN_1987, Volmer_2010, UNKNOWN_1993, Shi_S_2000 Leibowitz_1988, Nowak_1984
740 Harmar_1984 Three tachykinins in mammalian brain Harmar, Anthony J. 1984 1984-03-31 PMC N 10.1016/s0166-2236(84)80154-x 51owqk1z 0.319510 UNKNOWN_1987, Luytjes_1988, Ivarsson_2012, Callison_1999 Hui_K_2007, Macours_2004, Gabrilovac_2005, Danziger_2007
741 Dokland_2010 The structural biology of PRRSV Dokland, Terje 2010 2010-12-31 PMC N PMC7114433 20692304.0 10.1016/j.virusres.2010.07.029 sbuvw7a1 0.319469 den_Boon_2010, Rice_1992, Ryu_W_2017, Volmer_2010, Pong_2011 Zhang_2015
742 Anand_2002 Structure of coronavirus main proteinase reveals combination of a chymotrypsin fold with an extra α-helical domain Anand, Kanchan; Palm, Gottfried J.; Mesters, Jeroen R.; Siddell, Stuart G.; Ziebuhr, John; Hilgenfeld, Rolf 2002 2002-07-01 PMC N PMC126080 12093723.0 10.1093/emboj/cdf327 2sfqsfm1 0.319469 Ivarsson_2012, UNKNOWN_1987, Smith_2003, Pong_2011, Sato_2019 Piñón_1997, Tsai_2010, Rozanov_1995
743 Aliebrahimi_2017 Identification of Phytochemicals Targeting c-Met Kinase Domain using Consensus Docking and Molecular Dynamics Simulation Studies Aliebrahimi, Shima; Montasser Kouhsari, Shideh; Ostad, Seyed Nasser; Arab, Seyed Shahriar; Karami, Leila 2017 2017-08-29 PMC N PMC7090793 28852971.0 10.1007/s12013-017-0821-6 lfmtmqju 0.319115 Smith_2003, Ivarsson_2012, Kumar_2016, Choudhury_2017, Blank_2017 Li_J_2006, Tian_2012, Lee_G_2012
744 You_J_2007 Trafficking motifs in the SARS-coronavirus nucleocapsid protein You, Jae-Hwan; Reed, Mark L.; Hiscox, Julian A. 2007 2007-07-13 PMC N PMC7092899 17524366.0 10.1016/j.bbrc.2007.05.036 cea11cyx 0.319067 Volmer_2010, Kang_2009, Shi_S_2000, UNKNOWN_1993, UNKNOWN_1987 Zhang_2015, Timani_2005, Guo_Y_2003, Sun_D_2016
745 Loschwitz_2020 Chapter Seven Computer simulations of protein–membrane systems Loschwitz, Jennifer; Olubiyi, Olujide O.; Hub, Jochen S.; Strodel, Birgit; Poojari, Chetan S. 2020 2020-12-31 PMC N PMC7109768 32145948.0 10.1016/bs.pmbts.2020.01.001 h1kuzit7 0.319067 Liu_Z_2008, Ruiz-Herrero_2015, UNKNOWN_2004, Plewczyński_2008 Collins_2012, Shen_2013, OuYang_2018, Fischer_2011
746 Elfiky_2019 Novel guanosine derivatives against Zika virus polymerase in silico Elfiky, Abdo A. 2019 2019-08-29 PMC N PMC7166851 31436327.0 10.1002/jmv.25573 qpq7i1ya 0.318712 Rice_1992, Naito_2007, Pong_2011, Ryu_W_2017, Stork_2011
747 Anthonsen_1994 The blind watchmaker and rational protein engineering Anthonsen, Henrik W.; Baptista, António; Drabløs, Finn; Martel, Paulo; Petersen, Steffen B. 1994 1994-08-31 PMC N 7765263.0 10.1016/0168-1656(94)90152-x 8lnpujip 0.318333 Liu_Z_2008, UNKNOWN_2004, Dubois_2016, Yang_2017, Ivarsson_2012
748 Bissaro_2020 Exploring the RNA-Recognition Mechanism Using Supervised Molecular Dynamics (SuMD) Simulations: Toward a Rational Design for Ribonucleic-Targeting Molecules? Bissaro, Maicol; Sturlese, Mattia; Moro, Stefano 2020 2020-02-27 COMM-USE N PMC7057144 32175307.0 10.3389/fchem.2020.00107 i2mac4xm 0.318302 Liu_Z_2008, Ivarsson_2012, Sztuba-Solinska_2019, Park_2012, Dawson_2007 Becker_2016, Moulaei_2010, Kanitz_2019, Wang_2013
749 Batool_2017 Structural insights into the Middle East respiratory syndrome coronavirus 4a protein and its dsRNA binding mechanism Batool, Maria; Shah, Masaud; Patra, Mahesh Chandra; Yesudhas, Dhanusha; Choi, Sangdun 2017 2017-09-12 COMM-USE N PMC5596018 28900197.0 10.1038/s41598-017-11736-6 yoaobr99 0.318282 Berkhout_2006, Taschuk_2020, Leung_2012, Trobaugh_2017, Ivarsson_2012 Rabouw_2016, Thornbrough_2016, Menachery_2017
750 Kolchanov_1996 Chemical and Computer Probing of RNA Structure 1 Kolchanov, N.A.; Titov, I.I.; Vlassova, I.E.; Vlassov, V.V. 1996 1996-12-31 PMC N 8650302.0 10.1016/s0079-6603(08)60144-0 xuxlw4c0 0.318282 Staple_2005, Wu_B_2009, Stork_2011, Martínez-Salas_2008, Wang_2017 Myllykoski_2017, Byszewska_2015
751 Schwertassek_2007 Selective redox regulation of cytokine receptor signaling by extracellular thioredoxin-1 Schwertassek, Ulla; Balmer, Yves; Gutscher, Marcus; Weingarten, Lars; Preuss, Marc; Engelhard, Johanna; Winkler, Monique; Dick, Tobias P 2007 2007-07-11 NONCOMM N PMC1914094 17557078.0 10.1038/sj.emboj.7601746 i9arl3oi 0.317868 Ivarsson_2012, Greene_2012, Smith_2003, Choudhury_2017 Yurchenko_2010, Metcalfe_2012, Firla_2002, Stolf_2011
752 Stegmann_2013 Immunoregulation through membrane proteins modified by reducing conditions induced by immune reactions Stegmann, Monika; Metcalfe, Clive; Barclay, A. Neil 2013 2013-01-16 PMC N PMC7163605 23233323.0 10.1002/eji.201242849 nxb5vyuv 0.317784 Trobaugh_2017, Berkhout_2006, Shi_J_2012, Klein_2011
753 Chang_2008 Membrane interaction and structure of the transmembrane domain of influenza hemagglutinin and its fusion peptide complex Chang, Ding-Kwo; Cheng, Shu-Fang; Kantchev, Eric Aseen B; Lin, Chi-Hui; Liu, Yu-Tsan 2008 2008-01-15 COMM-USE N PMC2267159 18197965.0 10.1186/1741-7007-6-2 5no746n6 0.317714 UNKNOWN_1993, Modis_2013, UNKNOWN_1987, UNKNOWN_1993, Cosson_2013 Voß_D_2009, Bissonnette_2009
754 Bassetto_2016 Structural biology in antiviral drug discovery Bassetto, Marcella; Massarotti, Alberto; Coluccia, Antonio; Brancale, Andrea 2016 2016-10-31 PMC N 27611878.0 10.1016/j.coph.2016.08.014 3eoio8uk 0.317193 Park_2012, Ivarsson_2012, Liu_Z_2008, Berkhout_2006 Chang_2019, Niu_C_2008, Tian_2012, Robinson_2013
755 Petit_2007 Palmitoylation of the cysteine-rich endodomain of the SARS–coronavirus spike glycoprotein is important for spike-mediated cell fusion Petit, Chad M.; Chouljenko, Vladimir N.; Iyer, Arun; Colgrove, Robin; Farzan, Michael; Knipe, David M.; Kousoulas, K.G. 2007 2007-04-10 PMC N PMC7103323 17134730.0 10.1016/j.virol.2006.10.034 0p0q6a3i 0.316824 UNKNOWN_1987, Chang_2000, UNKNOWN_1993, Volmer_2010, Yang_2012 Voß_D_2009, Chang_2000, Guillén_2009, Chen_2009
756 Badani_2014 Peptide entry inhibitors of enveloped viruses: The importance of interfacial hydrophobicity Badani, Hussain; Garry, Robert F.; Wimley, William C. 2014 2014-09-30 None N PMC7094693 24780375.0 10.1016/j.bbamem.2014.04.015 8dg1supr 0.316605 Ivarsson_2012, Tessier_2019, Berkhout_2006, Cosson_2013, Trobaugh_2017 Teissier_2011, Park_2017, Lee_C_2019, van_der_Linden_2014
757 Rani_2011 Comparative domain modeling of human EGF-like module EMR2 and study of interaction of the fourth domain of EGF with chondroitin 4-sulphate() Rani, Mukta; Dikhit, Manas R.; Sahoo, Ganesh C; Das, Pradeep 2011 2011-03-23 None N PMC3596701 23554678.0 10.1016/s1674-8301(11)60013-4 p7e7tqag 0.316402 Ivarsson_2012, Smith_2003, UNKNOWN_1987, Sato_2019, Lawson_2012 Wang_2013, Someya_2008, Voß_D_2009
758 Cerutti_1985 Characterization and localization of CIV polypeptides Cerutti, Martine; Devauchelle, Gérard 1985 1985-08-31 PMC N PMC7131272 18640546.0 10.1016/0042-6822(85)90207-7 cnlager0 0.315839 UNKNOWN_1987, Callison_1999, Yang_2012, UNKNOWN_1993, UNKNOWN_1993 Gordon_1991, Strong_1991
759 Chen_2020 Identification of the immunodominant neutralizing regions in the spike glycoprotein of porcine deltacoronavirus Chen, Rui; Fu, Jiayu; Hu, Jingfei; Li, Cheng; Zhao, Yujia; Qu, Huan; Wen, Xintian; Cao, Sanjie; Wen, Yiping; Wu, Rui; Zhao, Qin; Yan, Qigui; Huang, Yong; Ma, Xiaoping; Han, Xinfeng; Huang, Xiaobo 2020 2020-01-15 PMC N PMC7114822 31816342.0 10.1016/j.virusres.2019.197834 8flsy5o1 0.315832 Okda_2017, Volmer_2010, Hu_W_2013, Zeng_2004, Yang_2010 Jiang_2017, Chen_2017
760 Aeksiri_2017 Structural insights into type I and type II of nsp4 porcine reproductive and respiratory syndrome virus (nsp4 PRRSV) by molecular dynamics simulations Aeksiri, Niran; Jantafong, Tippawan 2017 2017-06-30 PMC N PMC7110526 28411461.0 10.1016/j.jmgm.2017.03.015 wsd30c6f 0.315827 Smith_2003, Yang_2012, Callison_1999, UNKNOWN_1987, Ivarsson_2012 Jiang_2017, Xu_L_2018
761 Jiang_2009 The Role of the Charged Residues of the GP2 Helical Regions in Ebola Entry() Jiang, Haiqing; Wang, Jizhen; Manicassamy, Balaji; Manicassamy, Santhakumar; Caffrey, Michael; Rong, Lijun 2009 2009-04-23 PMC N PMC3516429 23227032.0 qwzigb15 0.315467 Volmer_2010, Pong_2011, Kang_2009, Gnirß_2014, Meyerson_2017 Piñón_1997
762 Yang_2009 Peptide Bioinformatics- Peptide Classification Using Peptide Machines Yang, Zheng Rong 2009 2009-01-01 PMC N PMC7122642 19065810.0 10.1007/978-1-60327-101-1_9 hkvll3xh 0.315116 Sen_D_2018, Liou_2013, Lee_C_2017, Liu_Z_2008 Cai_C_2006, Lee_B_2009, Choo_2009
763 Chitrala_2019 Computational prediction and in vitro validation of VEGFR1 as a novel protein target for 2,3,7,8-tetrachlorodibenzo-p-dioxin Chitrala, Kumaraswamy Naidu; Yang, Xiaoming; Busbee, Brandon; Singh, Narendra P.; Bonati, Laura; Xing, Yongna; Nagarkatti, Prakash; Nagarkatti, Mitzi 2019 2019-05-02 COMM-USE N PMC6497656 31048752.0 10.1038/s41598-019-43232-4 sib13c9c 0.314295 Blank_2017, Ban_J_2018, Ivarsson_2012, Haasnoot_2010, Choudhury_2017 Grazioso_2012, Li_J_2006
764 Kizziah_2020 Structure of the host cell recognition and penetration machinery of a Staphylococcus aureus bacteriophage Kizziah, James L.; Manning, Keith A.; Dearborn, Altaira D.; Dokland, Terje 2020 2020-02-18 COMM-USE N PMC7048315 32069326.0 10.1371/journal.ppat.1008314 ob5igsv5 0.314051 Rice_1992, Taschuk_2020, den_Boon_2010, Chen_2020 McCaig_2016, Sun_D_2016, Vigerust_2011, van_der_Linden_2014
765 Rigter_2013 A Protective and Safe Intranasal RSV Vaccine Based on a Recombinant Prefusion-Like Form of the F Protein Bound to Bacterium-Like Particles Rigter, Alan; Widjaja, Ivy; Versantvoort, Hanneke; Coenjaerts, Frank E. J.; van Roosmalen, Maarten; Leenhouts, Kees; Rottier, Peter J. M.; Haijema, Bert Jan; de Haan, Cornelis A. M. 2013 2013-08-12 COMM-USE N PMC3741363 23951084.0 10.1371/journal.pone.0071072 lmswl9ol 0.313953 Volmer_2010, Jiang_2006, Yasui_2016, Hu_W_2013, Tallmadge_2008 Sawada_2011, Killikelly_2016
766 Choudhury_2017 RNA-binding activity of TRIM25 is mediated by its PRY/SPRY domain and is required for ubiquitination Nila Roy Choudhury; Gregory Heikel; Maryia Trubitsyna; Peter Kubik; Jakub Stanislaw Nowak; Shaun Webb; Sander Granneman; Christos Spanos; Juri Rappsilber; Alfredo Castello; Gracjan Michlewski 2017 2017-10-09 BioRxiv N 10.1101/200410 ifla4aix 0.313952 Blank_2017, Yasuda-Inoue_2013, Yan_J_2007, Ban_J_2018 Choudhury_2017, Sato_2019, Deng_2019
767 Antanasijevic_2013 Inhibition of Influenza H7 Hemagglutinin-Mediated Entry Antanasijevic, Aleksandar; Cheng, Han; Wardrop, Duncan J.; Rong, Lijun; Caffrey, Michael 2013 2013-10-23 COMM-USE N PMC3806803 24194835.0 10.1371/journal.pone.0076363 5u2j4xdi 0.313866 Volmer_2010, Yasui_2016, Gomis-Rüth_2003, Kang_2009, Pong_2011 Antanasijevic_2020
768 Thangapandian_2012 Structural Origins for the Loss of Catalytic Activities of Bifunctional Human LTA4H Revealed through Molecular Dynamics Simulations Thangapandian, Sundarapandian; John, Shalini; Lazar, Prettina; Choi, Sun; Lee, Keun Woo 2012 2012-07-25 COMM-USE N PMC3405069 22848428.0 10.1371/journal.pone.0041063 w9iwmqgq 0.313866 Ivarsson_2012, Smith_2003, Chan_2016, Choudhury_2017, UNKNOWN_1987 Buller_2012, Someya_2008, Kanitz_2019, Yin_J_2007
769 Kim_M_2013 A mass weighted chemical elastic network model elucidates closed form domain motions in proteins Kim, Min Hyeok; Seo, Sangjae; Jeong, Jay Il; Kim, Bum Joon; Liu, Wing Kam; Lim, Byeong Soo; Choi, Jae Boong; Kim, Moon Ki 2013 2013-03-18 PMC N PMC3649262 23456820.0 10.1002/pro.2244 p8n8va3y 0.313717 Qi_Z_2018, Bifolchi_2013, Kirillova_2009, Chang_2011, Liou_2013 Mascarenhas_2017, RAMAKRISHNA_2015, CAO_S_2012, Eddy_2018
770 ZHOU_2008 A cysteine-rich metal-binding domain from rubella virus non-structural protein is essential for viral protease activity and virus replication ZHOU, Yubin; TZENG, Wen-Pin; YE, Yiming; HUANG, Yun; LI, Shunyi; CHEN, Yanyi; FREY, Teryl K.; YANG, Jenny J. 2008 2008-12-23 PMC N PMC2908387 18795894.0 10.1042/bj20081468 z7z7sf7b 0.313420 Pong_2011, Kang_2009, Yang_2010, Volmer_2010, Gorbalenya_1988
771 Le_T_2007 Expression, post‐translational modification and biochemical characterization of proteins encoded by subgenomic mRNA8 of the severe acute respiratory syndrome coronavirus Le, Tra M.; Wong, Hui H.; Tay, Felicia P. L.; Fang, Shouguo; Keng, Choong‐Tat; Tan, Yee J.; Liu, Ding X. 2007 2007-07-20 PMC N PMC7164070 17645546.0 10.1111/j.1742-4658.2007.05947.x 5fh477c4 0.313320 Volmer_2010, Shen_2005, UNKNOWN_1987, Stork_2011, Shi_S_2000
772 Zhang_2018 Exploring the Binding Mechanism between Human Profilin (PFN1) and Polyproline-10 through Binding Mode Screening Leili Zhang; David R. Bell; Binquan Luan; Ruhong Zhou 2018 2018-09-16 BioRxiv N 10.1101/418830 40pe21lm 0.312862 Qi_Z_2018, Chang_2011, Saw_A_2019, Polverino_2017, Plewczyński_2008 Wang_2013, Yap_Y_2005, Niu_C_2008, Du_Q_2004
773 Chen_2009 Random dissection to select for protein split sites and its application in protein fragment complementation Chen, Yong; Li, Shuang; Chen, Tingjian; Hua, Hui; Lin, Zhanglin 2009 2009-02-01 PMC N PMC2708047 19165722.0 10.1002/pro.42 a6amhlzy 0.312468 Brake_2008, Wu_G_2005, Morikawa_1992, Krause_1987, Wurch_1991 Someya_2008
774 Dey_A_2009 Biochemical and biophysical comparison of cleaved and uncleaved soluble, trimeric HIV-1 envelope glycoproteins Dey, Antu K.; David, Kathryn B.; Lu, Min; Moore, John P. 2009 2009-03-01 PMC N PMC3795524 19135223.0 10.1016/j.virol.2008.12.009 ei0pem9v 0.312458 Tallmadge_2008, Jiang_2006, Pong_2011, Gomis-Rüth_2003 Prabakaran_2007, Anand_2019
775 Shen_2006 Probabilistic analysis of the frequencies of amino acid pairs within characterized protein sequences Shen, Shiyi; Kai, Bo; Ruan, Jishou; Torin Huzil, J.; Carpenter, Eric; Tuszynski, Jack A. 2006 2006-10-15 PMC N PMC7127678 10.1016/j.physa.2006.03.004 hjo78o1q 0.312451 Chang_2011, Saw_A_2019, Lee_C_2017, Qi_Z_2018 Nandy_2009, Otsuka_1999
776 Yap_Y_2005 Structural analysis of inhibition mechanisms of Aurintricarboxylic Acid on SARS-CoV polymerase and other proteins Yap, YeeLeng; Zhang, XueWu; Andonov, Anton; He, RunTao 2005 2005-06-30 PMC N PMC7106521 15979041.0 10.1016/j.compbiolchem.2005.04.006 8c05w1ix 0.311642 Pong_2011, Stork_2011, Kang_2009, Gorbalenya_1988, Yasuda-Inoue_2013 van_der_Linden_2014, Hung_2010, Deng_2019, Sidhu_1996
777 Shahwan_2013 Sialic Acid Binding Properties of Soluble Coronavirus Spike (S1) Proteins: Differences between Infectious Bronchitis Virus and Transmissible Gastroenteritis Virus Shahwan, Katarina; Hesse, Martina; Mork, Ann-Kathrin; Herrler, Georg; Winter, Christine 2013 2013-07-26 COMM-USE N PMC3761233 23896748.0 10.3390/v5081924 hvh470s3 0.311241 Volmer_2010, Tallmadge_2008, Meyerson_2017, Ban_J_2018 Oleszak_1990, Pulford_1991
778 Penn-Nicholson_2008 Assessment of antibody responses against gp41 in HIV-1-infected patients using soluble gp41 fusion proteins and peptides derived from M group consensus envelope Penn-Nicholson, Adam; Han, Dong P.; Kim, Soon J.; Park, Hanna; Ansari, Rais; Montefiori, David C.; Cho, Michael W. 2008 2008-03-15 None N PMC2293309 18068750.0 10.1016/j.virol.2007.11.009 t36cz8hs 0.311241 Okda_2017, Hu_W_2013, Jiang_2006, Dey_A_2009 Azizi_2006, Andrabi_2012, Doran_2014
779 Vy_T_2020 Spontaneous Hinge-Bending Motions of Angiotensin I Converting Enzyme: Role in Activation and Inhibition Vy, Thi Tuong; Heo, Seong-Yeong; Jung, Won-Kyo; Yi, Myunggi 2020 2020-03-12 COMM-USE N PMC7146279 32178362.0 10.3390/molecules25061288 fm01bijc 0.311010 Ivarsson_2012, Chan_2016, Smith_2003, Qi_Z_2018
780 Pérez-Faginas_2011 Synthesis and SAR studies on azetidine-containing dipeptides as HCMV inhibitors Pérez-Faginas, Paula; Aranda, M. Teresa; García-López, M. Teresa; Snoeck, Robert; Andrei, Graciela; Balzarini, Jan; González-Muñiz, Rosario 2011 2011-02-01 PMC N PMC7127091 21256035.0 10.1016/j.bmc.2010.12.052 z6ijfhjp 0.310141 Smith_2003, Ivarsson_2012, Yang_2012, Deng_2006 Grazioso_2012, Cho_A_2012, Im_I_2009, Novikov_2013
781 Pandey_2018 Novel Immunoinformatics Approaches to Design Multi-epitope Subunit Vaccine for Malaria by Investigating Anopheles Salivary Protein Pandey, Rajan Kumar; Bhatt, Tarun Kumar; Prajapati, Vijay Kumar 2018 2018-01-18 COMM-USE N PMC5773588 29348555.0 10.1038/s41598-018-19456-1 4evbeijx 0.309982 Berkhout_2006, Rice_1992, Trobaugh_2017, Volmer_2010, Herbert_2016 Sumova_2018, Chen_2007, Lee_C_2011
782 Memczak_2016 Anti-Hemagglutinin Antibody Derived Lead Peptides for Inhibitors of Influenza Virus Binding Memczak, Henry; Lauster, Daniel; Kar, Parimal; Di Lella, Santiago; Volkmer, Rudolf; Knecht, Volker; Herrmann, Andreas; Ehrentreich-Förster, Eva; Bier, Frank F.; Stöcklein, Walter F. M. 2016 2016-07-14 COMM-USE N PMC4944999 27415624.0 10.1371/journal.pone.0159074 9mxi4dzi 0.309616 Hu_W_2013, Wrammert_2011, Yasui_2016, Rice_1992, Naito_2007 Han_T_2011, Oleszak_1990
783 Reguera_2014 A structural view of coronavirus–receptor interactions Reguera, Juan; Mudgal, Gaurav; Santiago, César; Casasnovas, José M. 2014 2014-12-19 PMC N PMC7114462 25451063.0 10.1016/j.virusres.2014.10.005 npryvcy3 0.309412 Rice_1992, Volmer_2010, den_Boon_2010, Trobaugh_2017, Bermejo-Jambrina_2018 Du_L_2007, Qing_2020
784 Zhang_2011 Identification of a linear epitope on the capsid protein of classical swine fever virus Zhang, Xin; Xu, Jia; Sun, Yuan; Li, Su; Li, Na; Yang, Shuo; He, Fan; Huang, Jun-Hua; Ling, Li-Jun; Qiu, Hua-Ji 2011 2011-03-31 PMC N PMC7114404 21255622.0 10.1016/j.virusres.2011.01.009 7ilutd8n 0.309355 Volmer_2010, Tallmadge_2008, Pong_2011, Kang_2009, Li_C_2013 Brun_2014, Xing_2009
785 Tan_K_2002 Crystal structure of murine sCEACAM1a[1,4]: a coronavirus receptor in the CEA family Tan, Kemin; Zelus, Bruce D.; Meijers, Rob; Liu, Jin-huan; Bergelson, Jeffrey M.; Duke, Norma; Zhang, Rongguang; Joachimiak, Andrzej; Holmes, Kathryn V.; Wang, Jia-huai 2002 2002-05-01 PMC N PMC125375 11980704.0 10.1093/emboj/21.9.2076 ymceytj3 0.309355 Ivarsson_2012, UNKNOWN_1987, Pong_2011, Chang_2000 DOKI_2016
786 Tarnovitski_2006 Mapping a Neutralizing Epitope on the SARS Coronavirus Spike Protein: Computational Prediction Based on Affinity-selected Peptides Tarnovitski, Natalia; Matthews, Leslie J.; Sui, Jianhua; Gershoni, Jonathan M.; Marasco, Wayne A. 2006 2006-05-26 PMC N PMC7094247 16630634.0 10.1016/j.jmb.2006.03.008 8i5okszf 0.309112 Naito_2007, Volmer_2010, Hu_W_2013, Rice_1992, Callison_1999 Hua_R_2013, Elshabrawy_2012, Lee_Y_2007
787 Myllykoski_2017 Structural aspects of nucleotide ligand binding by a bacterial 2H phosphoesterase Myllykoski, Matti; Kursula, Petri 2017 2017-01-31 COMM-USE N PMC5283653 28141848.0 10.1371/journal.pone.0170355 0a3okta0 0.308539 Ivarsson_2012, Gorbalenya_1988, Smith_2003, Chan_2016, Sundaramoorthy_2018 Buller_2012, Kanitz_2019
788 Vicente_2015 Conformational changes of the HsDHODH N-terminal Microdomain via DEER Spectroscopy Vicente, Eduardo F.; Sahu, Indra D.; Costa-Filho, Antonio J.; Cilli, Eduardo M.; Lorigan, Gary A. 2015 2015-07-02 PMC N PMC4814773 26086954.0 10.1021/acs.jpcb.5b01706 j7g4obni 0.308432 Ivarsson_2012, Cosson_2013, UNKNOWN_1987, UNKNOWN_1993, Smith_2003 Buller_2012, Grazioso_2012, Myllykoski_2017, Someya_2008
789 Cao_S_2005 Yeast expression and characterization of SARS-CoV N protein Cao, Shishu; Wang, Haihe; Luhur, Arthur; Wong, Sek-Man 2005 2005-12-31 PMC N PMC7112830 16026862.0 10.1016/j.jviromet.2005.06.010 rmomnmjy 0.307473 Wang_2009, Shenyang_2007, Shen_2005, Leibowitz_1988 Wang_2009, Ren_A_2004, Loa_C_2004, Chen_2009
790 Teterina_2006 Testing the modularity of the N-terminal amphipathic helix conserved in picornavirus 2C proteins and hepatitis C NS5A protein Teterina, Natalya L.; Gorbalenya, Alexander E.; Egger, Denise; Bienz, Kurt; Rinaudo, Mario S.; Ehrenfeld, Ellie 2006 2006-01-20 PMC N PMC7111807 16226781.0 10.1016/j.virol.2005.08.044 00a19z5i 0.306990 Volmer_2010, Stork_2011, Rice_1992, Kang_2009, Pong_2011 Piñón_1997
791 Fan_Z_2006 SARS‐CoV nucleocapsid protein binds to hUbc9, a ubiquitin conjugating enzyme of the sumoylation system Fan, Zheng; Zhuo, Yue; Tan, Xinyu; Zhou, Zhi; Yuan, Jiangang; Qiang, Boqin; Yan, Jinghua; Peng, Xiaozhong; Gao, George F. 2006 2006-09-22 PMC N PMC7167196 16998888.0 10.1002/jmv.20707 0zvtiai8 0.306916 Volmer_2010, Kang_2009, UNKNOWN_1987, Blank_2017, Meyerson_2017
792 Manepalli_2012 Monoamine Transporter Structure, Function, Dynamics, and Drug Discovery: A Computational Perspective Manepalli, Sankar; Surratt, Christopher K.; Madura, Jeffry D.; Nolan, Tammy L. 2012 2012-08-24 PMC N PMC3475841 22918625.0 10.1208/s12248-012-9391-0 n3kjcm6s 0.306710 Wang_2006, Liu_Z_2008, Polverino_2017, Qi_Z_2018, Ivarsson_2012 Manepalli_2011, Li_J_2006, Grazioso_2012
793 Han_T_2011 Fine epitope mapping of monoclonal antibodies against hemagglutinin of a highly pathogenic H5N1 influenza virus using yeast surface display Han, Thomas; Sui, Jianhua; Bennett, Andrew S.; Liddington, Robert C.; Donis, Ruben O.; Zhu, Quan; Marasco, Wayne A. 2011 2011-06-03 None N PMC3119598 21569761.0 10.1016/j.bbrc.2011.04.139 3p1dniph 0.306691 Hu_W_2013, Okda_2017, Wrammert_2011, Yasui_2016 Oleszak_1990
794 Armijos-Jaramillo_2020 SARS-CoV-2, an evolutionary perspective of interaction with human ACE2 reveals undiscovered amino acids necessary for complex stability Vinicio Armijos-Jaramillo; Justin Yeager; Claire Muslin; Yunierkis Perez-Castillo 2020 2020-03-23 BioRxiv Y 10.1101/2020.03.21.001933 q0yqnlyl 0.306610 Trobaugh_2017, Rice_1992, Volmer_2010, Wang_2018, Haasnoot_2010 Niemeyer_2018, Elshabrawy_2012, Yuan_2004, Zhang_2009
795 Papadopoulos_2001 Analysis of the thyrotropin‐releasing hormone‐degrading ectoenzyme by site‐directed mutagenesis of cysteine residues: Cys68 is involved in disulfide‐linked dimerization Papadopoulos, Theofilos; Heuer, Heike; Bauer, Karl 2001 2001-12-25 PMC N PMC7163949 10785382.0 10.1046/j.1432-1327.2000.01277.x thjecxg7 0.306399 Smith_2003, UNKNOWN_1987, Ivarsson_2012, Yang_2012, Chang_2000
796 Nakauchi_2008 Analysis of severe acute respiratory syndrome coronavirus structural proteins in virus‐like particle assembly Nakauchi, Mina; Kariwa, Hiroaki; Kon, Yasuhiro; Yoshii, Kentaro; Maeda, Akihiko; Takashima, Ikuo 2008 2008-12-03 PMC N PMC7168385 19120977.0 10.1111/j.1348-0421.2008.00079.x 1z65wl6m 0.306354 Volmer_2010, Wang_2009, Narayanan_2003, Shen_2005
797 Li_G_2009 A Comparative Docking Study of Anibamine as the First Natural Product CCR5 Antagonist in CCR5 Homology Models Li, Guo; Haney, Kendra M.; Kellogg, Glen E.; Zhang, Yan 2009 2009-01-26 PMC N PMC2656111 19166361.0 10.1021/ci800356a 75o3z87q 0.306260 Ivarsson_2012, Naito_2007, Ban_J_2018, Rice_1992, Greene_2012 Grazioso_2012, Zhu_X_2015, Lee_C_2019
798 Chou_2014 Structural basis for catalysis and ubiquitin recognition by the Severe acute respiratory syndrome coronavirus papain‐like protease Chou, Chi‐Yuan; Lai, Hsing‐Yi; Chen, Hung‐Yi; Cheng, Shu‐Chun; Cheng, Kai‐Wen; Chou, Ya‐Wen 2014 2014-02-17 PMC N PMC7161584 24531491.0 10.1107/s1399004713031040 o60cr7jj 0.306260 Sato_2019, Smith_2003, Ivarsson_2012, Schlieker_2007, UNKNOWN_1987
799 Wu_Y_2020 Strong evolutionary convergence of receptor-binding protein spike between COVID-19 and SARS-related coronaviruses Yonghua Wu 2020 2020-03-04 BioRxiv Y 10.1101/2020.03.04.975995 4ihv80au 0.306099 Wang_2018, Volmer_2010, Rivas_2016, Chang_2011, Holmes_2007 Niemeyer_2018, Ng_O_2014, Tan_Y_2020, Zheng_2020
800 Kuo_S_2013 Evolution of infectious bronchitis virus in Taiwan: Positively selected sites in the nucleocapsid protein and their effects on RNA-binding activity Kuo, Shu-Ming; Kao, Hsiao-Wei; Hou, Ming-Hon; Wang, Ching-Ho; Lin, Siou-Hong; Su, Hong-Lin 2013 2013-03-23 PMC N PMC7117379 23159091.0 10.1016/j.vetmic.2012.10.020 5h3l6nh6 0.305955 Volmer_2010, Morikawa_1992, Kang_2009, Rice_1992, Luytjes_1988 Lachheb_2019, Ren_X_2008, Kuo_S_2010
801 Bagowski_2010 The Nature of Protein Domain Evolution: Shaping the Interaction Network Bagowski, Christoph P; Bruins, Wouter; te Velthuis, Aartjan J.W 2010 2010-08-23 COMM-USE N PMC2945003 21286315.0 10.2174/138920210791616725 ampip7od 0.305782 Liu_Z_2008, UNKNOWN_2004, Ivarsson_2012, Chang_2011 Järvelin_2016, Han_W_2011, Zhang_2015
802 Xiao_2011 Identification of a Putative Crimean-Congo Hemorrhagic Fever Virus Entry Factor Xiao, Xiaodong; Feng, Yang; Zhu, Zhongyu; Dimitrov, Dimiter S. 2011 2011-07-01 PMC N PMC3155881 21723257.0 10.1016/j.bbrc.2011.06.109 09pyozbi 0.305572 Volmer_2010, Rice_1992, Compton_2014, Gnirß_2014, Tallmadge_2008 Wang_2016, Zhang_2015, Takada_2012
803 Pfab_2020 DeepTracer: Predicting Backbone Atomic Structure from High Resolution Cryo-EM Density Maps of Protein Complexes Jonas Pfab; Dong Si 2020 2020-02-13 BioRxiv N 10.1101/2020.02.12.946772 er6lz09f 0.305120 Qi_Z_2018, Chang_2011, Saw_A_2019, Liao_2006, Dai_Q_2012 Zhong_2020, Subramaniam_2016, Yang_2020
804 Wu_Y_2019 “Breathing” Hemagglutinin Reveals Cryptic Epitopes for Universal Influenza Vaccine Design Wu, Yan; Gao, George F. 2019 2019-05-16 PMC N PMC7112349 31100263.0 10.1016/j.cell.2019.04.034 roeom0yv 0.304770 Walker_2010, Hu_W_2013, Lu_P_2016, Wrammert_2011, Mooney_2013 Jin_J_2018, Poh_C_2020, Rao_S_2010
805 UNKNOWN_1993 The amino-terminal domain of the lamin B receptor is a nuclear envelope targeting signal None 1993 1993-03-01 NONCOMM N PMC2119726 7679672.0 377v2ufn 0.304764 UNKNOWN_1993, UNKNOWN_1987, UNKNOWN_1993, Wang_2013 UNKNOWN_1993, UNKNOWN_1987, UNKNOWN_1995
806 Rettinger_2016 Examples of Applications of Electrophysiology Rettinger, Jürgen; Schwarz, Silvia; Schwarz, Wolfgang 2016 2016-06-03 PMC N PMC7123767 10.1007/978-3-319-30012-2_8 subm50ld 0.304484 Ivarsson_2012, Liu_Z_2008, Qi_Z_2018, Tessier_2019, Haasnoot_2010 Oxenoid_2013, Nonomura_2019, Erdös_1997
807 Li_F_2005 Sumoylation of the nucleocapsid protein of severe acute respiratory syndrome coronavirus Li, Frank Qisheng; Xiao, Han; Tam, James P.; Liu, D.X. 2005 2005-04-25 PMC N PMC7094623 15848177.0 10.1016/j.febslet.2005.03.039 f6mlvl56 0.304484 Meyerson_2017, Volmer_2010, Pong_2011, Ban_J_2018, Kang_2009 Zhang_2015, Voß_D_2009, Kanjanahaluethai_2007, Ren_A_2004
808 Stodola_2018 The OC43 human coronavirus envelope protein is critical for infectious virus production and propagation in neuronal cells and is a determinant of neurovirulence and CNS pathology Stodola, Jenny K.; Dubois, Guillaume; Le Coupanec, Alain; Desforges, Marc; Talbot, Pierre J. 2018 2018-02-28 PMC N PMC7118982 29287230.0 10.1016/j.virol.2017.12.023 vq5fy8m5 0.304484 Tallmadge_2008, Rice_1992, Volmer_2010, Ban_J_2018, Compton_2014 Westerbeck_2018
809 Croxford_2006 Structural requirements for initiation of cross‐reactivity and CNS autoimmunity with a PLP(139–151) mimic peptide derived from murine hepatitis virus Croxford, J. Ludovic; Ercolini, Anne M.; DeGutes, Mathew; Miller, Stephen D. 2006 2006-09-15 PMC N PMC7163677 16981179.0 10.1002/eji.200635876 dtadsozz 0.304129 Kim_T_2005, Yasui_2016, Ban_J_2018, Tallmadge_2008, Volmer_2010
810 Banse_2018 CD81 Receptor Regions outside the Large Extracellular Loop Determine Hepatitis C Virus Entry into Hepatoma Cells Banse, Pia; Moeller, Rebecca; Bruening, Janina; Lasswitz, Lisa; Kahl, Sina; Khan, Abdul G.; Marcotrigiano, Joseph; Pietschmann, Thomas; Gerold, Gisa 2018 2018-04-20 COMM-USE N PMC5923501 29677132.0 10.3390/v10040207 d4803787 0.303844 Volmer_2010, Greene_2012, Kang_2009, Compton_2014, UNKNOWN_1987 Krey_2010, Neufeldt_2016
811 Schlesinger_1987 Domains of Virus Glycoproteins Schlesinger, Milton J.; Schlesinger, Sondra 1987 1987-12-31 PMC N PMC7131334 3296693.0 10.1016/s0065-3527(08)60315-2 pk77w5av 0.303749 Ivarsson_2012, UNKNOWN_1987, Volmer_2010, Trobaugh_2017, Cosson_2013 Voß_D_2009, Niemann_1982, McDowell_1988
812 Lugari_2010 Molecular Mapping of the RNA Cap 2′-O-Methyltransferase Activation Interface between Severe Acute Respiratory Syndrome Coronavirus nsp10 and nsp16 Lugari, Adrien; Betzi, Stephane; Decroly, Etienne; Bonnaud, Emmanuel; Hermant, Aurélie; Guillemot, Jean-Claude; Debarnot, Claire; Borg, Jean-Paul; Bouvet, Mickaël; Canard, Bruno; Morelli, Xavier; Lécine, Patrick 2010 2010-08-10 PMC N PMC2963367 20699222.0 10.1074/jbc.m110.120014 h4cl022f 0.303002 Gorbalenya_1988, Yasuda-Inoue_2013, Volmer_2010, Pong_2011, Li_C_2013
813 Wu_Y_2014 Bat-derived influenza-like viruses H17N10 and H18N11 Wu, Ying; Wu, Yan; Tefsen, Boris; Shi, Yi; Gao, George F. 2014 2014-04-30 PMC N PMC7127364 24582528.0 10.1016/j.tim.2014.01.010 jaciqq54 0.302992 Lu_P_2016, Yasui_2016, Ryu_W_2017, Rice_1992, Volmer_2010 Ren_C_2019, Niemeyer_2018
814 Xing_2010 Molecular anatomy of subcellular localization of HSV-1 tegument protein US11 in living cells Xing, Junji; Wu, Fuqing; Pan, Weiwei; Zheng, Chunfu 2010 2010-10-31 PMC N PMC7114396 20633584.0 10.1016/j.virusres.2010.07.009 cow1mhm9 0.302427 Volmer_2010, UNKNOWN_1993, Greene_2012, Yasuda-Inoue_2013, UNKNOWN_1993 Zhang_2015, UNKNOWN_1994, Fulcher_2011
815 Punjani_2019 Non-uniform refinement: Adaptive regularization improves single particle cryo-EM reconstruction Ali Punjani; Haowei Zhang; David J. Fleet 2019 2019-12-16 BioRxiv N 10.1101/2019.12.15.877092 bqwmx5dy 0.302247 Montgomery_2004, Qi_Z_2018, DiMaio_2016, Dai_Q_2012 Punjani_2020, Zhong_2020, Acar_2016, Jonić_2016
816 Channappanavar_2015 Protective Effect of Intranasal Regimens Containing Peptidic Middle East Respiratory Syndrome Coronavirus Fusion Inhibitor Against MERS-CoV Infection Channappanavar, Rudragouda; Lu, Lu; Xia, Shuai; Du, Lanying; Meyerholz, David K.; Perlman, Stanley; Jiang, Shibo 2015 2015-06-08 PMC N PMC4655857 26164863.0 10.1093/infdis/jiv325 oy5p7pfo 0.302247 Ban_J_2018, Meyerson_2017, Pong_2011, UNKNOWN_1987, Compton_2014 Xia_S_2019, Veiga_2006, Elshabrawy_2012
817 Veiga_2006 Why are HIV-1 fusion inhibitors not effective against SARS-CoV? Biophysical evaluation of molecular interactions Veiga, Salomé; Yuan, Yunyun; Li, Xuqin; Santos, Nuno C.; Liu, Gang; Castanho, Miguel A.R.B. 2006 2006-01-31 PMC N PMC7116955 16290276.0 10.1016/j.bbagen.2005.10.001 axbibuo5 0.301278 Volmer_2010, Tallmadge_2008, Compton_2014, Meyerson_2017, Gnirß_2014 Yuan_2004, Zhu_X_2015, Guillén_2009, Elshabrawy_2012
818 Vendeix_2012 Human tRNA(Lys3)(UUU) is Pre-Structured by Natural Modifications for Cognate and Wobble Codon Binding through Keto-EnolTautomerism Vendeix, Franck A. P.; Murphy, Frank V.; Cantara, William A.; Leszczyńska, Grażyna; Gustilo, Estella M.; Sproat, Brian; Malkiewicz, Andrzej; Agris, Paul F. 2012 2012-03-01 PMC N PMC3662832 22227389.0 10.1016/j.jmb.2011.12.048 xx73wawr 0.300357 Morikawa_1992, Krause_1987, Powell_2011, Brierley_1989, Huang_2018 Tükenmez_2015, Marczinke_2000, Scrima_2004, Powell_2011