Topic 47 -- Abstracts with Biological Entities (English) - 75 Topics

cite ad title authors publish year publish time dataset abstract mentions covid pmcid pubmed id doi cord uid topic weight Similarity scispacy Similarity specter
1 Zhang_2012 Analysis of synonymous codon usage patterns in torque teno sus virus 1 (TTSuV1) Zhang, Zhicheng; Dai, Wei; Wang, Yang; Lu, Chengping; Fan, Hongjie 2012 2012-09-26 PMC N PMC7086873 23011310.0 10.1007/s00705-012-1480-y 1czjl0hz 0.896415 Gu_W_2004, Liu_Y_2010, Zhang_2014, Xu_X_2019 Liu_Y_2010, Gu_W_2004, Zhang_2013, He_Q_2012
2 LIU_X_2012 Patterns and influencing factor of synonymous codon usage in porcine circovirus LIU, Xin-sheng; Zhang, Yong-guang; Fang, Yu-zhen; Wang, Yong-lu 2012 2012-03-15 COMM-USE N PMC3341187 22416942.0 10.1186/1743-422x-9-68 a93brk5n 0.871327 Gu_W_2004, Zhang_2014, Liu_Y_2010, Xu_X_2019 Liu_Y_2011, Liu_Y_2010, Gu_W_2004, Sheikh_2020
3 Zhang_2013 Synonymous Codon Usage in TTSuV2: Analysis and Comparison with TTSuV1 Zhang, Zhicheng; Dai, Wei; Dai, Dingzhen 2013 2013-11-26 COMM-USE N PMC3841265 24303050.0 10.1371/journal.pone.0081469 uqr00nzd 0.871279 Gu_W_2004, Liu_Y_2010, Zhang_2012, Zhang_2014 Zhang_2012, Liu_Y_2010, Gu_W_2004, He_Q_2012
4 Gun_L_2018 Comprehensive Analysis and Comparison on the Codon Usage Pattern of Whole Mycobacterium tuberculosis Coding Genome from Different Area Gun, Li; Yumiao, Ren; Haixian, Pan; Liang, Zhang 2018 2018-05-08 COMM-USE N PMC5964552 29854746.0 10.1155/2018/3574976 g1ekir5w 0.824079 Gu_W_2004, Zhang_2014, Liu_Y_2010, Xu_X_2019, Li_X_2016 Liu_Y_2010, Sheikh_2020, Yi_Y_2012, LIU_X_2012
5 Zhang_2014 Analysis of synonymous codon usage in enterovirus 71 Zhang, Hua; Cao, Hong-wei; Li, Feng-qi; Pan, Zi-ye; Wu, Zhi-jun; Wang, Yan-hong; Cui, Yu-dong 2014 2014-05-21 PMC N PMC4188181 25674591.0 10.1007/s13337-014-0215-y rhya2tgn 0.809295 Gu_W_2004, Xu_X_2019, Liu_Y_2010, Liu_Y_2011 Zhao_2008, Gu_W_2004, Sheikh_2020, Liu_Y_2010
6 Hassan_2010 Synonymous Codon Usage Analysis of Thirty Two Mycobacteriophage Genomes Hassan, Sameer; Mahalingam, Vasantha; Kumar, Vanaja 2010 2010-02-01 COMM-USE N PMC2817497 20150956.0 10.1155/2009/316936 wncp60xy 0.802847 Gu_W_2004, Liu_Y_2010, Xu_X_2019, Morikawa_1992 Gu_W_2004, Liu_Y_2010, Sheikh_2020, He_Q_2012
7 Woo_P_2007 Cytosine deamination and selection of CpG suppressed clones are the two major independent biological forces that shape codon usage bias in coronaviruses Woo, Patrick C.Y.; Wong, Beatrice H.L.; Huang, Yi; Lau, Susanna K.P.; Yuen, Kwok-Yung 2007 2007-12-20 PMC N PMC7103290 17881030.0 10.1016/j.virol.2007.08.010 qybhe5hm 0.792798 Gu_W_2004, Zhang_2014, Liu_Y_2010, Wu_G_2005, Xu_X_2019 Sheikh_2020, Gu_W_2004, Yi_Y_2012, Gutiérrez_2013
8 Wang_2018 Genome-wide analysis of codon usage bias in four sequenced cotton species Wang, Liyuan; Xing, Huixian; Yuan, Yanchao; Wang, Xianlin; Saeed, Muhammad; Tao, Jincai; Feng, Wei; Zhang, Guihua; Song, Xianliang; Sun, Xuezhen 2018 2018-03-27 COMM-USE N PMC5870960 29584741.0 10.1371/journal.pone.0194372 zi7m3eto 0.774234 Gu_W_2004, Liu_Y_2010, Zhang_2014, Hassan_2010, Zhang_2012 Li_X_2016, Sheikh_2020, Yi_Y_2012, He_Q_2012
9 Jiang_2007 Analysis of Synonymous Codon Usage in Aeropyrum pernix K1 and Other Crenarchaeota Microorganisms Jiang, Peng; Sun, Xiao; Lu, Zuhong 2007 2007-03-31 PMC N PMC7129909 17498625.0 10.1016/s1673-8527(07)60029-0 3odqx06m 0.764279 Gu_W_2004, Liu_Y_2010, Li_X_2016, Xu_X_2019 Gu_W_2004, Yi_Y_2012, Guan_2018
10 Chen_2014 Characterization of the porcine epidemic diarrhea virus codon usage bias Chen, Ye; Shi, Yuzhen; Deng, Hongjuan; Gu, Ting; Xu, Jian; Ou, Jinxin; Jiang, Zhiguo; Jiao, Yiren; Zou, Tan; Wang, Chong 2014 2014-12-31 PMC N 25239728.0 10.1016/j.meegid.2014.09.004 w449hj3l 0.760756 Gu_W_2004, Xu_X_2019, Zhang_2014, Liu_Y_2010, Liu_Y_2011 Liu_Y_2010, Sun_J_2018, Ren_X_2008, Gu_W_2004
11 Gu_W_2004 Analysis of synonymous codon usage in SARS Coronavirus and other viruses in the Nidovirales Gu, Wanjun; Zhou, Tong; Ma, Jianmin; Sun, Xiao; Lu, Zuhong 2004 2004-05-31 PMC N PMC7127446 15041183.0 10.1016/j.virusres.2004.01.006 3mj670c2 0.752734 Liu_Y_2010, Xu_X_2019, Zhang_2014, Zhang_2012 Liu_Y_2010, Sheikh_2020, Zhao_2008, Tort_2020
12 He_Q_2012 Characterization of Synonymous Codon Usage in the Newly Identified Duck Plague Virus UL16 Gene He, Qin; Wang, Mingshu; Cheng, Anchun; Zhu, Dekang; Chen, Xiaoyue; Jia, Renyong; Luo, Qihui; Zhou, Yi; Chen, Zhengli 2012 2012-01-01 PMC N PMC7122970 10.1007/978-3-642-27537-1_89 m6ubkutm 0.748579 Gu_W_2004, Liu_Y_2010, Morikawa_1992, Xu_X_2019 Shi_Y_2012, Sheikh_2020, Liu_Y_2010, Gu_W_2004
13 Zheng_2011 Relationship between polymorphism of DC-SIGN (CD209) gene and the susceptibility to pulmonary tuberculosis in an eastern Chinese population Zheng, Ruijuan; Zhou, Yan; Qin, Lianhua; Jin, Ruiliang; Wang, Jie; Lu, Junmei; Wang, WeiBing; Tang, Shenjie; Hu, Zhongyi 2011 2011-02-28 PMC N PMC7132724 21081145.0 10.1016/j.humimm.2010.11.004 wfljfiut 0.731029 Boily-Larouche_2007, Callison_1999, Gramberg_2006, Volmer_2010 Barreiro_2006, Amiri_2017, Xu_Y_2010, Matos_2007
14 Shi_Y_2012 Characterization of Codon Usage Bias in UL21gene from Duck Enteritis Virus Shi, Yong; Cheng, Anchun; Wang, Mingshu 2012 2012-12-31 PMC N 10.1016/j.aasri.2012.06.020 89lryb7f 0.722314 Gu_W_2004, Liu_Y_2010, Xu_X_2019, Morikawa_1992, Firth_2009 He_Q_2012, Yi_Y_2012, Gu_W_2004, Ren_X_2008
15 Xu_X_2019 Comprehensive analysis of synonymous codon usage patterns in orf3 gene of porcine epidemic diarrhea virus in China Xu, Xin; Li, Pengfei; Zhang, Yating; Wang, Xianhe; Xu, Jiaxin; Wu, Xuening; Shen, Yujiang; Guo, Dexuan; Li, Yuchang; Yao, Lili; Li, Liyang; Song, Baifen; Ma, Jinzhu; Liu, Xinyang; Xu, Shuyan; Zhang, Hua; Wu, Zhijun; Cao, Hongwei 2019 2019-12-31 PMC N 31677415.0 10.1016/j.rvsc.2019.09.012 w7pz83s1 0.721912 Gu_W_2004, Liu_Y_2010, Zhang_2014, Zhang_2012
16 Wang_2016 Analysis of Synonymous Codon Usage Bias of Zika Virus and Its Adaption to the Hosts Wang, Hongju; Liu, Siqing; Zhang, Bo; Wei, Wenqiang 2016 2016-11-28 COMM-USE N PMC5125587 27893824.0 10.1371/journal.pone.0166260 s9gpxpf0 0.717405 Gu_W_2004, Butt_2014, Zhang_2014, Liu_Y_2011, Liu_Y_2010 Butt_2016, Gu_W_2004, Yi_Y_2012, Zhao_2008
17 Zhang_2011 Analysis of codon usage and nucleotide composition bias in polioviruses Zhang, Jie; Wang, Meng; Liu, Wen-qian; Zhou, Jian-hua; Chen, Hao-tai; Ma, Li-na; Ding, Yao-zhong; Gu, Yuan-xing; Liu, Yong-sheng 2011 2011-03-30 COMM-USE N PMC3079669 21450075.0 10.1186/1743-422x-8-146 tg0tczni 0.712321 Gu_W_2004, Zhang_2014, Liu_Y_2010, Zhang_2011, Liu_Y_2011 Zhang_2011, Sheikh_2020, LIU_X_2012, Gu_W_2004
18 Brady_2019 A nematode-specific gene underlies bleomycin-response variation in Caenorhabditis elegans Shannon C. Brady; Stefan Zdraljevic; Karol W. Bisaga; Robyn E. Tanny; Daniel E. Cook; Daehan Lee; Ye Wang; Erik C. Andersen 2019 2019-03-01 BioRxiv N 10.1101/565218 75v2qt1w 0.703629 Chang_2011, Francis_2016, Berkhout_2006, Callison_1999 Brady_2019, Evans_2020, Deng_2019
19 Zhao_2008 Analysis of synonymous codon usage in 11 Human Bocavirus isolates Zhao, Sheng; Zhang, Qin; Liu, Xiaolin; Wang, Xuemin; Zhang, Huilin; Wu, Yan; Jiang, Fei 2008 2008-06-30 PMC N PMC7116908 18378386.0 10.1016/j.biosystems.2008.01.006 o1k0q78x 0.701988 Gu_W_2004, Zhang_2014, Xu_X_2019, Liu_Y_2010, Zhang_2012 Gu_W_2004, Ren_X_2008, Lachheb_2019, Liu_Y_2010
20 Olofsson_2003 A comparative genetic analysis between collagen‐induced arthritis and pristane‐induced arthritis Olofsson, Peter; Lu, Shemin; Holmberg, Jens; Song, Tusheng; Wernhoff, Patrik; Pettersson, Ulf; Holmdahl, Rikard 2003 2003-08-01 PMC N PMC7159749 12905489.0 10.1002/art.11100 vabpw8ec 0.689175 Macnaughton_1980, Callison_1999, Francis_2016, Aylor_2011
21 Wang_2010 Analysis of codon usage in bovine viral diarrhea virus Wang, Meng; Zhang, Jie; Zhou, Jian-hua; Chen, Hao-tai; Ma, Li-na; Ding, Yao-zhong; Liu, Wen-qian; Liu, Yong-sheng 2010 2010-11-11 PMC N PMC7087306 21069395.0 10.1007/s00705-010-0848-0 gtzpz1yb 0.677837 Gu_W_2004, Liu_Y_2010, Zhang_2014, Zhang_2012, Xu_X_2019 Ren_X_2008, Liu_Y_2010, Zhao_2008, Gu_W_2004
22 Li_X_2016 Genome-Wide Analysis of Codon Usage Bias in Epichloë festucae Li, Xiuzhang; Song, Hui; Kuang, Yu; Chen, Shuihong; Tian, Pei; Li, Chunjie; Nan, Zhibiao 2016 2016-07-15 COMM-USE N PMC4964511 27428961.0 10.3390/ijms17071138 5vpzgzvz 0.675744 Gu_W_2004, Liu_Y_2010, Xu_X_2019, Zhang_2014 Yi_Y_2012, Jiang_2007, LIU_X_2012, Chakraborty_2019
23 Brady_2019 A Novel Gene Underlies Bleomycin-Response Variation in Caenorhabditis elegans Brady, Shannon C.; Zdraljevic, Stefan; Bisaga, Karol W.; Tanny, Robyn E.; Cook, Daniel E.; Lee, Daehan; Wang, Ye; Andersen, Erik C. 2019 2019-06-06 COMM-USE N PMC6707474 31171655.0 10.1534/genetics.119.302286 n9bd4m0f 0.673905 Francis_2016, Chang_2011, Berkhout_2006, Brady_2019, Callison_1999 Brady_2019, Evans_2020
24 Tort_2020 A COMPREHENSIVE ANALYSIS OF GENOME COMPOSITION AND CODON USAGE PATTERNS OF EMERGING CORONAVIRUSES Tort, Fernando L.; Castells, Matías; Cristina, Juan 2020 2020-04-12 PMC Y 10.1016/j.virusres.2020.197976 hidirfkv 0.667313 Gu_W_2004, Zhang_2014, Liu_Y_2010, Xu_X_2019, Zhang_2012 Gu_W_2004, Sheikh_2020, Niemeyer_2018, Chen_2017
25 Liu_Y_2010 Analysis of synonymous codon usage in porcine reproductive and respiratory syndrome virus Liu, Yong-sheng; Zhou, Jian-hua; Chen, Hao-tai; Ma, Li-na; Ding, Yao-zhong; Wang, Meng; Zhang, Jie 2010 2010-08-31 PMC N PMC7106271 20438864.0 10.1016/j.meegid.2010.04.010 8790q2in 0.654007 Gu_W_2004, Xu_X_2019, Morikawa_1992, Zhang_2014 Gu_W_2004, Sheikh_2020, LIU_X_2012, Ren_X_2008
26 Liu_Y_2011 The characteristics of the synonymous codon usage in enterovirus 71 virus and the effects of host on the virus in codon usage pattern Liu, Yong-sheng; Zhou, Jian-hua; Chen, Hao-tai; Ma, Li-na; Pejsak, Zygmunt; Ding, Yao-zhong; Zhang, Jie 2011 2011-07-31 PMC N 21382519.0 10.1016/j.meegid.2011.02.018 190jmgcq 0.651992 Gu_W_2004, Zhang_2014, Liu_Y_2010, Xu_X_2019 LIU_X_2012, Sheikh_2020, Liu_Y_2010, Gu_W_2004
27 Zhang_2011 Analysis of synonymous codon usage in Hepatitis A virus Zhang, Yiqiang; Liu, Yongsheng; Liu, Wenqian; Zhou, Jianhua; Chen, Haotai; Wang, Yin; Ma, Lina; Ding, Yaozhong; Zhang, Jie 2011 2011-04-16 COMM-USE N PMC3087699 21496278.0 10.1186/1743-422x-8-174 a11ztdpg 0.651537 Gu_W_2004, Zhang_2014, Xu_X_2019, Liu_Y_2010 Gu_W_2004, Zhao_2008, Liu_Y_2010, LIU_X_2012
28 Dettogni_2013 Polymorphic genetic variation in immune system genes: a study of two populations of Espirito Santo, Brazil Dettogni, Raquel Spinassé; Sá, Ricardo Tristão; Tovar, Thaís Tristão; Louro, Iúri Drumond 2013 2013-05-11 PMC N PMC7088621 23666056.0 10.1007/s11033-013-2582-7 5iqkh85d 0.650524 Lan_H_2019, Gu_W_2004, HAN_B_2008, Tan_J_2009 Torres_2010, Mo_J_2013, Amiri_2017, Yang_2011
29 Butt_2014 Genome-Wide Analysis of Codon Usage and Influencing Factors in Chikungunya Viruses Butt, Azeem Mehmood; Nasrullah, Izza; Tong, Yigang 2014 2014-03-04 COMM-USE N PMC3942501 24595095.0 10.1371/journal.pone.0090905 gxqufddb 0.648708 Gu_W_2004, Zhang_2014, Liu_Y_2010, Liu_Y_2011 Gu_W_2004, Chakraborty_2019, Yi_Y_2012, Sheikh_2020
30 Shi_S_2016 Codon usage in Alphabaculovirus and Betabaculovirus hosted by the same insect species is weak, selection dominated and exhibits no more similar patterns than expected Shi, Sheng-Lin; Jiang, Yi-Ren; Yang, Rui-Sheng; Wang, Yong; Qin, Li 2016 2016-10-31 PMC N PMC7106102 27484795.0 10.1016/j.meegid.2016.07.042 gkha4p27 0.640623 Gu_W_2004, Zhang_2014, Wu_G_2005, Liu_Y_2010 Gu_W_2004, Sheikh_2020, Ahn_I_2009, Jiang_2007
31 Zhu_Z_2019 Homologous recombination shapes the genetic diversity of African swine fever viruses Zhu, Zhaozhong; Xiao, Chao-Ting; Fan, Yunshi; Cai, Zena; Lu, Congyu; Zhang, Gaihua; Jiang, Taijiao; Tan, Yongjun; Peng, Yousong 2019 2019-09-30 PMC N 31500735.0 10.1016/j.vetmic.2019.08.003 61crnh6a 0.638686 Auewarakul_2005, Rice_1992, Francis_2016, Li_D_2019
32 Zhong_2007 Mutation pressure shapes codon usage in the GC-Rich genome of foot-and-mouth disease virus Zhong, Jincheng; Li, Yanmin; Zhao, Sheng; Liu, Shenggang; Zhang, Zhidong 2007 2007-09-01 PMC N PMC7089325 17768673.0 10.1007/s11262-007-0159-z e2wobz55 0.624519 Gu_W_2004, Zhang_2014, Liu_Y_2010, Xu_X_2019 Liu_Y_2010, Zhao_2008, Ahn_I_2011, Yi_Y_2012
33 Guan_2018 Analysis of codon usage patterns in Hirudinaria manillensis reveals a preference for GC-ending codons caused by dominant selection constraints Guan, De-Long; Ma, Li-Bin; Khan, Muhammad Salabat; Zhang, Xiu-Xiu; Xu, Sheng-Quan; Xie, Juan-Ying 2018 2018-07-17 COMM-USE N PMC6050667 30016953.0 10.1186/s12864-018-4937-x 1yhxnvoh 0.616161 Gu_W_2004, Liu_Y_2010, Li_X_2016, Zhang_2014, Zhang_2012 Yi_Y_2012, Jiang_2007, Gu_W_2004, Chakraborty_2019
34 Mazumder_2015 Gaining Insights into the Codon Usage Patterns of TP53 Gene across Eight Mammalian Species Mazumder, Tarikul Huda; Chakraborty, Supriyo 2015 2015-03-25 COMM-USE N PMC4373688 25807269.0 10.1371/journal.pone.0121709 1qtqergw 0.615249 Gu_W_2004, Wu_G_2005, Morikawa_1992, Zhang_2014 Yi_Y_2012, Sheikh_2020, He_Q_2012, Liu_Y_2010
35 Chakraborty_2019 Analysis of codon usage patterns and influencing factors in Nipah virus Chakraborty, Supriyo; Deb, Bornali; Barbhuiya, Parvin A.; Uddin, Arif 2019 2019-04-02 PMC N PMC7114725 30664908.0 10.1016/j.virusres.2019.01.011 5t1kngfz 0.613952 Gu_W_2004, Zhang_2014, Liu_Y_2010, Xu_X_2019, Liu_Y_2011 Gu_W_2004, Sheikh_2020, Yi_Y_2012, Butt_2014
36 Wang_2016 Expansion and Functional Divergence of AP2 Group Genes in Spermatophytes Determined by Molecular Evolution and Arabidopsis Mutant Analysis Wang, Pengkai; Cheng, Tielong; Lu, Mengzhu; Liu, Guangxin; Li, Meiping; Shi, Jisen; Lu, Ye; Laux, Thomas; Chen, Jinhui 2016 2016-09-20 COMM-USE N PMC5029118 27703459.0 10.3389/fpls.2016.01383 6a18qznx 0.611138 Wang_2007, Dolja_2006, Hänske_2020, Krause_1987 Hashimoto_2005, Thibivilliers_2009, Liu_Q_2015, Ma_Q_2010
37 Liu_W_2011 Compare the differences of synonymous codon usage between the two species within cardiovirus Liu, Wen-qian; Zhang, Jie; Zhang, Yi-qiang; Zhou, Jian-hua; Chen, Hao-tai; Ma, Li-na; Ding, Yao-zhong; Liu, Yongsheng 2011 2011-06-27 COMM-USE N PMC3148564 21708006.0 10.1186/1743-422x-8-325 jrbyxc2o 0.610220 Gu_W_2004, Liu_Y_2010, Zhang_2014, Zhang_2012, Xu_X_2019 Ren_X_2008, Lachheb_2019, Mohamed_2018
38 Lucas_Sandri_2017 Geographical distribution of complement receptor type 1 variants and their associated disease risk Lucas Sandri, Thaisa; Adukpo, Selorme; Giang, Dao Phuong; Nguetse, Christian N.; Antunes Andrade, Fabiana; van Tong, Hoang; Toan, Nguyen Linh; Song, Le Huu; Elumalai, Preetham; Thangaraj, Kumarasamy; Valluri, Vijaya Lakshmi; Ntoumi, Francine; Meyer, Christian G.; Jose de Messias Reason, Iara; Kremsner, Peter G.; Velavan, Thirumalaisamy P. 2017 2017-05-17 COMM-USE N PMC5435133 28520715.0 10.1371/journal.pone.0175973 cxkyqfmd 0.605148 Boily-Larouche_2007, Lan_H_2019, Callison_1999, Gu_W_2004, Wang_2014 Sandri_2018, Yang_2011, Liu_C_2016, Kuo_H_2014
39 HAN_B_2008 Isolation and characterization of microsatellite loci in the western long‐fingered bat, Miniopterus magnater HAN, B. Y.; HUA, P. Y.; GU, X. M.; MILLER‐BUTTERWORTH, C. M.; ZHANG, S. Y. 2008 2008-10-29 PMC N PMC7168459 21586071.0 10.1111/j.1471-8286.2007.02008.x 267q415o 0.604121 Pratelli_2003, Lan_H_2019, Urushadze_2017, Goodman_2010
40 Xu_X_2008 Analysis of synonymous codon usage and evolution of begomoviruses Xu, Xiao-zhong; Liu, Qing-po; Fan, Long-jiang; Cui, Xiao-feng; Zhou, Xue-ping 2008 2008-08-29 PMC N PMC2528880 18763298.0 10.1631/jzus.b0820005 kswby0it 0.603328 Gu_W_2004, Auewarakul_2005, Lamb_1991, Liu_Y_2010 Sheikh_2020, Goldberg_1991, Gu_W_2004
41 Manderstedt_2018 Genetic variation in the C-type lectin receptor CLEC4M in type 1 von Willebrand Disease patients Manderstedt, Eric; Lind-Halldén, Christina; Lethagen, Stefan; Halldén, Christer 2018 2018-02-01 COMM-USE N PMC5794141 29389944.0 10.1371/journal.pone.0192024 7ll7sd3o 0.602539 Wang_2010, Chieochansin_2010, Callison_1999, Wu_G_2005 Zhu_X_2011, Zhang_2011, Yang_2011
42 Rintisch_2008 DA rats from two colonies differ genetically and in their arthritis susceptibility Rintisch, Carola; Holmdahl, Rikard 2008 2008-07-31 PMC N PMC7088020 18668290.0 10.1007/s00335-008-9125-x 7th4n6u4 0.600440 Chang_2011, Francis_2016, Callison_1999, Aylor_2011, Polverino_2017
43 Li_H_2012 The Origin and Evolution of Variable Number Tandem Repeat of CLEC4M Gene in the Global Human Population Li, Hui; Wang, Jia-Xin; Wu, Dong-Dong; Wang, Hua-Wei; Tang, Nelson Leung-Sang; Zhang, Ya-Ping 2012 2012-01-18 COMM-USE N PMC3261175 22279577.0 10.1371/journal.pone.0030268 kifsxqq2 0.596641 Francis_2016, Li_D_2019, Callison_1999, Gu_W_2004, Chang_2011 Jiang_2017, Berry_2005, Callaghan_2007, Lachheb_2019
44 Evans_2020 A single locus underlies variation in Caenorhabditis elegans chemotherapeutic responses Kathryn S. Evans; Erik C. Andersen 2020 2020-03-09 BioRxiv N 10.1101/2020.03.09.984393 t25skqxk 0.591963 Berkhout_2006, Haasnoot_2010, Chang_2011, Francis_2016 Brady_2019, Harper_2013, Brady_2019
45 Nasrullah_2015 Genomic analysis of codon usage shows influence of mutation pressure, natural selection, and host features on Marburg virus evolution Nasrullah, Izza; Butt, Azeem M; Tahir, Shifa; Idrees, Muhammad; Tong, Yigang 2015 2015-08-26 COMM-USE N PMC4550055 26306510.0 10.1186/s12862-015-0456-4 7pbfxcmp 0.584011 Gu_W_2004, Zhang_2014, Liu_Y_2010, Butt_2014, Liu_Y_2011 Liu_Y_2011, Sheikh_2020, LIU_X_2012, Liu_Y_2010
46 Lan_H_2019 Genetic Diversity and Differentiation at Structurally Varying MHC Haplotypes and Microsatellites in Bottlenecked Populations of Endangered Crested Ibis Lan, Hong; Zhou, Tong; Wan, Qiu-Hong; Fang, Sheng-Guo 2019 2019-04-25 COMM-USE N PMC6523929 31027280.0 10.3390/cells8040377 pxet4s4m 0.579383 Radwan_2010, Yuhki_1994, Francis_2016, Zheng_2008 Yuhki_1994, Tibayrenc_2015, Plasil_2016, Wei_L_2012
47 D’_Andrea_2011 A detailed comparative analysis on the overall codon usage patterns in Hepatitis A virus D’ Andrea, Lucía; Pintó, Rosa M.; Bosch, Albert; Musto, Héctor; Cristina, Juan 2011 2011-04-30 PMC N 21296111.0 10.1016/j.virusres.2011.01.012 66azyje4 0.574877 Gu_W_2004, Zhang_2014, Liu_Y_2010, Xu_X_2019
48 Barreiro_2005 The Heritage of Pathogen Pressures and Ancient Demography in the Human Innate-Immunity CD209/CD209L Region Barreiro, Luis B.; Patin, Etienne; Neyrolles, Olivier; Cann, Howard M.; Gicquel, Brigitte; Quintana-Murci, Lluís 2005 2005-11-30 PMC N 16252244.0 10.1086/497613 6z5f2gz3 0.574085 Francis_2016, Longdon_2018, Longdon_2017, Chang_2011, Simon-Loriere_2009 Barreiro_2005, Tibayrenc_2015, Walker_2011
49 Zhu_Z_2018 Homologous Recombination as an Evolutionary Force in African Swine Fever Viruses Zhaozhong Zhu; Chao-Ting Xiao; Yunshi Fan; Zena Cai; Congyu Lu; Gaihua Zhang; Taijiao Jiang; Yongjun Tan; Yousong Peng 2018 2018-11-04 BioRxiv N 10.1101/460832 z36oah6q 0.573953 Auewarakul_2005, Rice_1992, Volmer_2010, Zhu_Z_2019, Li_D_2019 Lachheb_2019, Ren_X_2008, Brun_2014
50 Gómez_2011 Analysis of human P[4]G2 rotavirus strains isolated in Brazil reveals codon usage bias and strong compositional constraints Gómez, Mariela Martínez; Tort, Luis Fernando Lopez; de Mello Volotao, Eduardo; Recarey, Ricardo; Moratorio, Gonzalo; Musto, Héctor; Leite, José Paulo G.; Cristina, Juan 2011 2011-04-30 PMC N 10.1016/j.meegid.2011.01.006 4afj5us1 0.573357 Gu_W_2004, Zhang_2014, Auewarakul_2005, Liu_Y_2010, Liu_Y_2011
51 Tang_2009 Genetic association between a chemokine gene CXCL-10 (IP-10, interferon gamma inducible protein 10) and susceptibility to tuberculosis Tang, Nelson Leung-Sang; Fan, Harris Pok Yin; Chang, Kwok Chiu; Ching, Jasmine Kuk Lai; Kong, Kathy Pui Shan; Yew, Wing Wai; Kam, Kai Man; Leung, Chi Chiu; Tam, Cheuk Ming; Blackwell, Jenefer; Chan, Chiu Yeung 2009 2009-08-11 PMC N PMC7124215 19523460.0 10.1016/j.cca.2009.06.006 t9ggzvel 0.571785 Wang_2010, Scagnolari_2012, Hamano_2005, Mo_J_2013, Shen_2013 Shen_2013, Hamano_2005, Mo_J_2013, Liu_C_2016
52 Barreiro_2005 The Heritage of Pathogen Pressures and Ancient Demography in the Human Innate-Immunity CD209/CD209L Region Barreiro, Luis B.; Patin, Etienne; Neyrolles, Olivier; Cann, Howard M.; Gicquel, Brigitte; Quintana-Murci, Lluís 2005 2005-09-29 PMC N PMC1271393 16252244.0 6z5f2gz3 0.568619 Francis_2016, Longdon_2018, Longdon_2017, Chang_2011, Simon-Loriere_2009 Barreiro_2005, Tibayrenc_2015, Walker_2011
53 Chen_2015 Impact of MBL and MASP-2 gene polymorphism and its interaction on susceptibility to tuberculosis Chen, Mengshi; Liang, Ying; Li, Wufei; Wang, Mian; Hu, Li; Abuaku, Benjamin Kwaku; Huang, Xin; Tan, Hongzhuan; Wen, Shi Wu 2015 2015-03-25 COMM-USE N PMC4399571 25887173.0 10.1186/s12879-015-0879-y tg0j6huk 0.566165 Chen_2018, Leung_2007, Tang_2014, Benjafield_2004, Wu_S_2018 Amiri_2017, Zhu_X_2011, Yang_2011
54 Hänske_2020 Natural selection supports escape from concerted evolution of a recently duplicated CEACAM1 paralog in the ruminant CEA gene family Hänske, Jana; Hammacher, Tim; Grenkowitz, Franziska; Mansfeld, Martin; Dau, Tung Huy; Maksimov, Pavlo; Friedrich, Christin; Zimmermann, Wolfgang; Kammerer, Robert 2020 2020-02-25 COMM-USE N PMC7042247 32099040.0 10.1038/s41598-020-60425-4 6p55tzyj 0.564140 Wang_2007, Krause_1987, Francis_2016, Li_D_2019 Kammerer_2010, Kammerer_2017, Kammerer_2007, Hayward_2018
55 Shen_2013 A Functional Promoter Polymorphism of IFITM3 Is Associated with Susceptibility to Pediatric Tuberculosis in Han Chinese Population Shen, Chen; Wu, Xi-rong; Jiao, Wei-wei; Sun, Lin; Feng, Wei-xing; Xiao, Jing; Miao, Qing; Liu, Fang; Yin, Qing-qin; Zhang, Chen-guang; Guo, Ya-jie; Shen, A-dong 2013 2013-07-09 COMM-USE N PMC3706438 23874452.0 10.1371/journal.pone.0067816 w64z6kh3 0.562895 Wang_2010, Brake_2008, Scagnolari_2012, Wang_2007 Mo_J_2013, Liu_C_2016, Torres_2010, Amiri_2017
56 Zhang_2010 Complex positive selection pressures drive the evolution of HIV-1 with different co-receptor tropisms Zhang, ChiYu; Ding, Na; Chen, KePing; Yang, RongGe 2010 2010-10-17 PMC N PMC7089306 20953943.0 10.1007/s11427-010-4066-5 vqhyyp88 0.561656 Tallmadge_2008, Auewarakul_2005, Naito_2007, Rice_1992
57 Hamano_2005 Polymorphisms of interferon-inducible genes OAS-1 and MxA associated with SARS in the Vietnamese population Hamano, Emi; Hijikata, Minako; Itoyama, Satoru; Quy, Tran; Phi, Nguyen Chi; Long, Hoang Thuy; Ha, Le Dang; Ban, Vo Van; Matsushita, Ikumi; Yanai, Hideki; Kirikae, Fumiko; Kirikae, Teruo; Kuratsuji, Tadatoshi; Sasazuki, Takehiko; Keicho, Naoto 2005 2005-04-22 PMC N PMC7092916 15766558.0 10.1016/j.bbrc.2005.02.101 s7r2pwxn 0.559378 Scagnolari_2012, Wang_2010, Gu_W_2004, Zhao_2012 Zhu_X_2011, He_J_2006, Noguchi_2013, Torres_2010
58 Ojosnegros_2008 Topology of evolving, mutagenized viral populations: quasispecies expansion, compression, and operation of negative selection Ojosnegros, Samuel; Agudo, Rubén; Sierra, Macarena; Briones, Carlos; Sierra, Saleta; González- López, Claudia; Domingo, Esteban; Cristina, Juan 2008 2008-07-17 COMM-USE N PMC2515104 18637173.0 10.1186/1471-2148-8-207 w33k8pdu 0.559156 Liu_Y_2011, Chang_2011, Gu_W_2004, Auewarakul_2005, Zhang_2014 Gutiérrez_2013, Zhao_2018, Somovilla_2019
59 Rathore_2008 Risk for HIV-1 infection is not associated with Repeat-Region polymorphism in the DC-SIGN neck domain and Novel Genetic DC-SIGN Variants among North Indians Rathore, Anurag; Chatterjee, Animesh; Sood, Vikas; Khan, Sohrab Z.; Banerjea, Akhil C.; Yamamoto, Naohiko; Dhole, Tapan N. 2008 2008-05-31 PMC N PMC7124224 18255039.0 10.1016/j.cca.2007.12.019 rigsose1 0.556870 Chieochansin_2010, Luytjes_1988, Morikawa_1992, Gu_W_2004 Rathore_2007, Xu_Y_2010, Li_H_2012, Zheng_2011
60 Barreiro_2007 Length Variation of DC-SIGN and L-SIGN Neck-Region has no Impact on Tuberculosis Susceptibility Barreiro, Luis B.; Neyrolles, Olivier; Babb, Chantal L.; van Helden, Paul D.; Gicquel, Brigitte; Hoal, Eileen G.; Quintana-Murci, Lluís 2007 2007-02-28 PMC N PMC7132702 17321900.0 10.1016/j.humimm.2006.10.020 q5nu6uyd 0.555057 Bermejo-Jambrina_2018, Ivarsson_2012, Barreiro_2006, Volmer_2010, Leung_2012 Barreiro_2006, Gramberg_2006, Celerino_da_Silva_2011, Yang_2019
61 Germain_2015 Loss of the Drosophila melanogaster DEAD box protein Ddx1 leads to reduced size and aberrant gametogenesis Germain, Devon R.; Li, Lei; Hildebrandt, Matthew R.; Simmonds, Andrew J.; Hughes, Sarah C.; Godbout, Roseline 2015 2015-11-15 PMC N PMC7094483 26433063.0 10.1016/j.ydbio.2015.09.012 aa3dzmbb 0.550972 Wang_2007, Berkhout_2006, Trobaugh_2017, Blank_2017, Volmer_2010 Yasuda-Inoue_2013, Li_C_2013
62 Liu_C_2016 Association of Mannose-binding Lectin Polymorphisms with Tuberculosis Susceptibility among Chinese Liu, Cheng; He, Tao; Rong, Yanxiao; Du, Fengjiao; Ma, Dongxing; Wei, Yujie; Mei, Zhiqin; Wang, Yuling; Wang, Haibin; Zhu, Yuehua; Zhang, Zongde; Zheng, Li; Wu, Xueqiong; Liu, Huiliang; Ding, Wenjun 2016 2016-11-04 COMM-USE N PMC5095599 27812036.0 10.1038/srep36488 wvo22jx2 0.550039 Chen_2018, Tang_2014, Rossi_2020, Moghadampour_2016 Amiri_2017, Ruskamp_2008, Ou_X_2011
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67 Boily-Larouche_2007 DC-SIGN and DC-SIGNR genetic diversity among different ethnic populations: Potential implications for pathogen recognition and disease susceptibility Boily-Larouche, Geneviève; Zijenah, Lynn S.; Mbizvo, Mike; Ward, Brian J.; Roger, Michel 2007 2007-06-30 PMC N PMC7115417 17509452.0 10.1016/j.humimm.2007.02.002 ermr7wlf 0.538886 Trobaugh_2017, Haasnoot_2010, Kolls_2012, Geijtenbeek_2009 Barreiro_2006, Zheng_2011, Xu_Y_2010, Shu_C_2015
68 Li_G_2018 Insights into the genetic and host adaptability of emerging porcine circovirus 3 Li, Gairu; Wang, Huijuan; Wang, Shilei; Xing, Gang; Zhang, Cheng; Zhang, Wenyan; Liu, Jie; Zhang, Junyan; Su, Shuo; Zhou, Jiyong 2018 2018-08-24 COMM-USE N PMC6177243 29973122.0 10.1080/21505594.2018.1492863 pbwzc2jy 0.534956 Gu_W_2004, Zhang_2014, Xu_X_2019, Liu_Y_2010, Wu_G_2005 Sun_W_2020, Zhang_2018, Lachheb_2019, Ren_X_2008
69 Butt_2016 Evolution of codon usage in Zika virus genomes is host and vector specific Butt, Azeem Mehmood; Nasrullah, Izza; Qamar, Raheel; Tong, Yigang 2016 2016-10-12 COMM-USE N PMC5117728 27729643.0 10.1038/emi.2016.106 u9ydspc1 0.533855 Gu_W_2004, Liu_Y_2011, Rice_1992, Butt_2016 Butt_2016, Liu_Y_2011, Sheikh_2020, Bahir_2009
70 Fumagalli_2010 Genome-Wide Identification of Susceptibility Alleles for Viral Infections through a Population Genetics Approach Fumagalli, Matteo; Pozzoli, Uberto; Cagliani, Rachele; Comi, Giacomo P.; Bresolin, Nereo; Clerici, Mario; Sironi, Manuela 2010 2010-02-19 COMM-USE N PMC2824813 20174570.0 10.1371/journal.pgen.1000849 7hcr406k 0.533236 Trobaugh_2017, Auewarakul_2005, Rice_1992, Haasnoot_2010, Naito_2007 Gralinski_2015
71 Harper_2013 Citrus tristeza virus: Evolution of Complex and Varied Genotypic Groups Harper, S. J. 2013 2013-04-23 COMM-USE N PMC3632782 23630519.0 10.3389/fmicb.2013.00093 jl3uah1i 0.533236 Francis_2016, Holmes_2007, Chang_2011, Longdon_2018, Longdon_2017 Tibayrenc_2015, Thibivilliers_2009, Becker_2019
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73 Boldt_2010 Phylogenetic nomenclature and evolution of mannose-binding lectin (MBL2) haplotypes Boldt, Angelica BW; Messias-Reason, Iara J; Meyer, Diogo; Schrago, Carlos G; Lang, Florian; Lell, Bertrand; Dietz, Klaus; Kremsner, Peter G; Petzl-Erler, Maria Luiza; Kun, Jürgen FJ 2010 2010-05-14 COMM-USE N PMC2885306 20465856.0 10.1186/1471-2156-11-38 6ck1drez 0.525289 Chang_2011, Zheng_2008, Gu_W_2004, Wang_2013, Francis_2016 Liu_C_2016, Tibayrenc_2015, Antony_2013, Neves_2015
74 Zhang_2006 Using maximum likelihood method to detect adaptive evolution of HCV envelope protein-coding genes Zhang, Wenjuan; Zhang, Yuan; Zhong, Yang 2006 2006-01-01 PMC N PMC7089483 10.1007/s11434-006-2118-9 rowoylge 0.524454 Chang_2011, Gu_W_2004, Lee_C_2017, Auewarakul_2005, Zhang_2014 Ren_X_2008, Lachheb_2019, Sheikh_2020
75 Callaghan_2007 Haplotypic diversity in human CEACAM genes: effects on susceptibility to meningococcal disease Callaghan, M J; Rockett, K; Banner, C; Haralambous, E; Betts, H; Faust, S; Maiden, M C J; Kroll, J S; Levin, M; Kwiatkowski, D P; Pollard, A J 2007 2007-10-25 PMC N PMC7094765 17960155.0 10.1038/sj.gene.6364442 e5lyy8lg 0.523493 Callison_1999, Volmer_2010, Grewelle_2020, Boily-Larouche_2007 Berry_2005, Bernard_2014, Xue_G_2013
76 Watson_2014 Sequencing of the human IG light chain loci from a hydatidiform mole BAC library reveals locus-specific signatures of genetic diversity Watson, Corey T.; Steinberg, Karyn Meltz; Graves, Tina A.; Warren, Rene L.; Malig, Maika; Schein, Jacqueline; Wilson, Richard K.; Holt, Robert A.; Eichler, Evan E.; Breden, Felix 2014 2014-10-23 PMC N PMC4304971 25338678.0 10.1038/gene.2014.56 qh06vlqe 0.515557 Watson_2014, Karaman_2005, Li_D_2019, Brown_1984 Watson_2014, UNKNOWN_1986, Berry_2005
77 Malone_2006 Glia Expression of MHC During CNS Infection by Neurotropic Coronavirus Malone, Karen E.; Ramakrishna, Chandran; Gonzalez, J.-M.; Stohlman, Stephan A.; Bergmann, Cornelia C. 2006 2006-01-01 PMC N PMC7123808 17037595.0 10.1007/978-0-387-33012-9_99 2d7zogi9 0.513352 Vande_Vusse_2018, Yu_D_2006, Tso_E_2004
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79 Lui_G_2020 Viral dynamics of SARS-CoV-2 across a spectrum of disease severity in COVID-19 Lui, Grace; Ling, Lowell; Lai, Christopher KC; Tso, Eugene YK; Fung, Kitty SC; Chan, Veronica; Ho, Tracy HY; Luk, Fion; Chen, Zigui; Ng, Joyce KC; Chow, Kai-ming; Cheng, Peter KC; Chan, Rickjason CW; Tsang, Dominic NC; Gomersall, Charles; Hui, David SC; Chan, Paul KS 2020 2020-04-18 PMC N 10.1016/j.jinf.2020.04.014 n05wjimk 0.513352
80 Chang_2013 Widespread Divergence of the CEACAM/PSG Genes in Vertebrates and Humans Suggests Sensitivity to Selection Chang, Chia Lin; Semyonov, Jenia; Cheng, Po Jen; Huang, Shang Yu; Park, Jae Il; Tsai, Huai-Jen; Lin, Cheng-Yung; Grützner, Frank; Soong, Yung Kuei; Cai, James J.; Hsu, Sheau Yu Teddy 2013 2013-04-16 COMM-USE N PMC3628338 23613906.0 10.1371/journal.pone.0061701 1jogs44p 0.512520 Francis_2016, Haasnoot_2010, Li_D_2019, Wang_2007, Hänske_2020 Kammerer_2010, Pavlopoulou_2014, Kammerer_2007
81 Leuven_2020 ΦX174 Attenuation by Whole Genome Codon Deoptimization James T. Van Leuven; Martina M. Ederer; Katelyn Burleigh; LuAnn Scott; Randall A. Hughes; Vlad Codrea; Andrew D. Ellington; Holly Wichman; Craig Miller 2020 2020-02-11 BioRxiv N 10.1101/2020.02.10.942847 mpb4fy16 0.511338 Gu_W_2004, Wu_G_2005, Zhang_2014, Francis_2016 Masante_2015, Satyanarayana_2003, Tzeng_2006
82 Wu_S_2018 2′-5′-Oligoadenylate synthetase 1 polymorphisms are associated with tuberculosis: a case-control study Wu, Shouquan; Wang, Yu; Chen, Guo; Zhang, Miaomiao; Wang, Minggui; He, Jian-Qing 2018 2018-11-29 COMM-USE N PMC6267069 30497421.0 10.1186/s12890-018-0746-x jzurpl1x 0.510862 Wang_2010, Leung_2007, Zhao_2012, Tang_2014 Mandal_2011, Hamano_2005, Zhu_X_2011, Noguchi_2013
83 Zhang_2017 Comprehensive assessment showed no associations of variants at the SLC10A1 locus with susceptibility to persistent HBV infection among Southern Chinese Zhang, Ying; Li, Yuanfeng; Wu, Miantao; Cao, Pengbo; Liu, Xiaomin; Ren, Qian; Zhai, Yun; Xie, Bobo; Hu, Yanling; Hu, Zhibin; Bei, Jinxin; Ping, Jie; Liu, Xinyi; Yu, Yinghua; Guo, Bingqian; Lu, Hui; Liu, Guanjun; Zhang, Haitao; Cui, Ying; Mo, Zengnan; Shen, Hongbing; Zeng, Yi-Xin; He, Fuchu; Zhang, Hongxing; Zhou, Gangqiao 2017 2017-04-21 COMM-USE N PMC5399367 28429786.0 10.1038/srep46490 c2b8w1hi 0.510566 Gu_W_2004, Zhang_2014, Callison_1999, Scagnolari_2012 Liu_C_2016, Yang_2011, Torres_2010, Shen_2013
84 Ahn_I_2009 Comparative study of synonymous codon usage variations between the nucleocapsid and spike genes of coronavirus, and C-type lectin domain genes of human and mouse Ahn, Insung; Jeong, Byeong-Jin; Son, Hyeon Seok 2009 2009-01-01 None N PMC2772977 19561398.0 10.3858/emm.2009.41.10.081 afvhp7z6 0.507858 Gu_W_2004, Auewarakul_2005, Firth_2009, Liu_Y_2010 Jouvenne_1992, Ren_X_2008
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86 Fitzsimmons_2018 A speed–fidelity trade-off determines the mutation rate and virulence of an RNA virus Fitzsimmons, William J.; Woods, Robert J.; McCrone, John T.; Woodman, Andrew; Arnold, Jamie J.; Yennawar, Madhumita; Evans, Richard; Cameron, Craig E.; Lauring, Adam S. 2018 2018-06-28 COMM-USE N PMC6040757 29953453.0 10.1371/journal.pbio.2006459 9cx1gdze 0.506664 Simon-Loriere_2011, Berkhout_2006, Mandary_2019, Holmes_2007, Belshaw_2008 Fitzsimmons_2018, Van_Slyke_2015
87 Cao_H_2013 Analysis of synonymous codon usage in Newcastle disease virus hemagglutinin–neuraminidase (HN) gene and fusion protein (F) gene Cao, Hong-wei; Li, De-shan; Zhang, Hua 2013 2013-11-12 PMC N PMC3889239 24426322.0 10.1007/s13337-013-0175-7 dowiji1c 0.504095 Gu_W_2004, Liu_Y_2010, Zhang_2014, Xu_X_2019, Luytjes_1988 Ren_X_2008, Sheikh_2020
88 Hanada_2004 A Large Variation in the Rates of Synonymous Substitution for RNA Viruses and Its Relationship to a Diversity of Viral Infection and Transmission Modes Hanada, Kousuke; Suzuki, Yoshiyuki; Gojobori, Takashi 2004 2004-06-23 PMC N PMC7107514 15014142.0 10.1093/molbev/msh109 36qx1sy9 0.503760 Gu_W_2004, Zhang_2014, Wu_G_2005, Auewarakul_2005 Hicks_2014
89 Abu‐Toamih_Atamni_2018 Mapping novel genetic loci associated with female liver weight variations using Collaborative Cross mice Abu‐Toamih Atamni, Hanifa J.; Botzman, Maya; Mott, Richard; Gat‐Viks, Irit; Iraqi, Fuad A. 2018 2018-10-24 COMM-USE N PMC6388055 30891567.0 10.1002/ame2.12036 1y34xsxk 0.503433 Aylor_2011, Francis_2016, Chang_2011, Goradia_1988, Callison_1999 Lorè_2020, Gralinski_2015, Dettogni_2013, Evans_2020
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91 Li_Q_2020 Genetic Variability of Human Angiotensin-Converting Enzyme 2 (hACE2) Among Various Ethnic Populations Quan Li; Zanxia Cao; Proton Rahman 2020 2020-04-15 BioRxiv Y 10.1101/2020.04.14.041434 bbn1tfq5 0.494968 Callison_1999, Francis_2016, Gu_W_2004, Wang_2007, Volmer_2010 Zhu_X_2011, Hamano_2005, Yang_2011, Torres_2010
92 Green_2017 Oas1b-dependent Immune Transcriptional Profiles of West Nile Virus Infection in the Collaborative Cross Green, Richard; Wilkins, Courtney; Thomas, Sunil; Sekine, Aimee; Hendrick, Duncan M.; Voss, Kathleen; Ireton, Renee C.; Mooney, Michael; Go, Jennifer T.; Choonoo, Gabrielle; Jeng, Sophia; de Villena, Fernando Pardo-Manuel; Ferris, Martin T.; McWeeney, Shannon; Gale, Michael 2017 2017-06-05 COMM-USE N PMC5473748 28592649.0 10.1534/g3.117.041624 b47t1q0z 0.491431 Macnaughton_1980, Berkhout_2006, Rice_1992, Auewarakul_2005 Case_2017, Terasaki_2016
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94 van_de_Vosse_2013 IL-12Rβ1 deficiency: mutation update and description of the IL12RB1 variation database van de Vosse, Esther; Haverkamp, Margje H.; Ramirez-Alejo, Noe; Martinez-Gallo, Mónica; Blancas-Galicia, Lizbeth; Metin, Ayşe; Garty, Ben Zion; Sun-Tan, Çağman; Broides, Arnon; de Paus, Roelof A.; Keskin, Özlem; Çağdaş, Deniz; Tezcan, Ilhan; Lopez-Ruzafa, Encarna; Aróstegui, Juan I.; Levy, Jacov; Espinosa-Rosales, Francisco J.; Sanal, Özden; Santos-Argumedo, Leopoldo; Casanova, Jean-Laurent; Boisson-Dupuis, Stephanie; van Dissel, Jaap T.; Bustamante, Jacinta 2013 2013-08-08 PMC N PMC4104692 23864330.0 10.1002/humu.22380 fz9i597a 0.489693 Toh_Z_2016, Gu_W_2004, Lee_S_2016, Morikawa_1992 Neves_2015, Malmo_2016, Torres_2010
95 Yi_Y_2012 Analysis of Codon Usage Bias in Interferon Alpha Gene of the Giant Panda (Ailuropoda Melanoleuca) Yi, Yue; Wang, Chengdong; Xu, Zhiwen; Li, Desheng; Zhu, Ling; Li, Fengqin; Qi, Xinqiao; Guo, Wanzhu 2012 2012-01-01 PMC N PMC7123504 10.1007/978-3-642-27537-1_37 y45y5svy 0.489693 Gu_W_2004, Liu_Y_2010, Zhang_2014, Li_X_2016, Xu_X_2019 Tan_X_2007, Sheikh_2020, Gu_W_2004, Goldberg_1991
96 Somovilla_2019 Evolutionary Dynamics in the RNA Bacteriophage Qβ Depends on the Pattern of Change in Selective Pressures Somovilla, Pilar; Manrubia, Susanna; Lázaro, Ester 2019 2019-06-18 COMM-USE N PMC6631425 31216651.0 10.3390/pathogens8020080 as3odkj7 0.487621 Holmes_2007, Li_C_2018, Simon-Loriere_2011, Chang_2011 Tibayrenc_2015
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99 Ferris_2013 Modeling Host Genetic Regulation of Influenza Pathogenesis in the Collaborative Cross Ferris, Martin T.; Aylor, David L.; Bottomly, Daniel; Whitmore, Alan C.; Aicher, Lauri D.; Bell, Timothy A.; Bradel-Tretheway, Birgit; Bryan, Janine T.; Buus, Ryan J.; Gralinski, Lisa E.; Haagmans, Bart L.; McMillan, Leonard; Miller, Darla R.; Rosenzweig, Elizabeth; Valdar, William; Wang, Jeremy; Churchill, Gary A.; Threadgill, David W.; McWeeney, Shannon K.; Katze, Michael G.; Pardo-Manuel de Villena, Fernando; Baric, Ralph S.; Heise, Mark T. 2013 2013-02-28 COMM-USE N PMC3585141 23468633.0 10.1371/journal.ppat.1003196 sc854ug9 0.485403 Trobaugh_2017, Haasnoot_2010, Grewelle_2020, Berkhout_2006, Rice_1992 Gralinski_2015, Loré_2018, Schäfer_2014, Lorè_2020
100 Nakano_2012 Common Variants in CDKN2B-AS1 Associated with Optic-Nerve Vulnerability of Glaucoma Identified by Genome-Wide Association Studies in Japanese Nakano, Masakazu; Ikeda, Yoko; Tokuda, Yuichi; Fuwa, Masahiro; Omi, Natsue; Ueno, Morio; Imai, Kojiro; Adachi, Hiroko; Kageyama, Masaaki; Mori, Kazuhiko; Kinoshita, Shigeru; Tashiro, Kei 2012 2012-03-12 COMM-USE N PMC3299784 22428042.0 10.1371/journal.pone.0033389 zmhobi0r 0.485160 Francis_2016, Chang_2011, Goradia_1988, Wang_2013 Yang_2011, Zhu_X_2011, Kuo_H_2014, Zhang_2015
101 Guillen-Guio_2018 Genomic Analyses of Human European Diversity at the Southwestern Edge: Isolation, African Influence and Disease Associations in the Canary Islands Guillen-Guio, Beatriz; Lorenzo-Salazar, Jose M; González-Montelongo, Rafaela; Díaz-de Usera, Ana; Marcelino-Rodríguez, Itahisa; Corrales, Almudena; Cabrera de León, Antonio; Alonso, Santos; Flores, Carlos 2018 2018-10-05 COMM-USE N PMC6278859 30289472.0 10.1093/molbev/msy190 dad3sz74 0.483113 Lim_T_2012, Wang_2014, Kim_J_2016, Eden_2020 Tibayrenc_2015, Dettogni_2013, El-Kafrawy_2019
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104 Keele_2019 Determinants of QTL Mapping Power in the Realized Collaborative Cross Keele, Gregory R.; Crouse, Wesley L.; Kelada, Samir N. P.; Valdar, William 2019 2019-05-01 COMM-USE N PMC6505132 30914424.0 10.1534/g3.119.400194 bh2dark5 0.479761 Chang_2011, Saw_A_2019, Francis_2016, Zheng_2008, Goradia_1988 Doumayrou_2015, Evans_2020, Aylor_2011, Abu‐Toamih_Atamni_2018
105 Barreiro_2006 Promoter Variation in the DC-SIGN–Encoding Gene CD209 Is Associated with Tuberculosis Barreiro, Luis B; Neyrolles, Olivier; Babb, Chantal L; Tailleux, Ludovic; Quach, Hélène; McElreavey, Ken; van Helden, Paul D.; Hoal, Eileen G; Gicquel, Brigitte; Quintana-Murci, Lluis 2006 2006-01-03 COMM-USE N PMC1324949 16379498.0 10.1371/journal.pmed.0030020 bfmng0fq 0.477992 Barreiro_2006, Grewelle_2020, Haasnoot_2010, Holmes_2007, Volmer_2010 Zheng_2011, Liu_C_2016, Barreiro_2006, Shen_2013
106 Yao_H_2019 Analysis of Synonymous Codon Usage Bias in Flaviviridae Virus Yao, Huipeng; Chen, Mengyu; Tang, Zizhong 2019 2019-06-27 COMM-USE N PMC6620835 31346520.0 10.1155/2019/5857285 n40be9ol 0.477814 Ryu_W_2017, Lu_P_2016, Crowe_2014, Davaro_2013, Tallmadge_2008 Gu_W_2004, Lachheb_2019, Gutiérrez_2013, Sheikh_2020
107 Sheikh_2020 Analysis of preferred codon usage in the coronavirus N genes and their implications for genome evolution and vaccine design Sheikh, Abdullah; Al-Taher, Abdulla; Al-Nazawi, Mohammed; Al-Mubarak, Abdullah I.; Kandeel, Mahmoud 2020 2020-03-31 PMC N PMC7119019 31911390.0 10.1016/j.jviromet.2019.113806 z9p1ylsr 0.477814 Gu_W_2004, Auewarakul_2005, Liu_Y_2010, Zhang_2014, Liu_Y_2011 Gu_W_2004, Goldberg_1991, Jouvenne_1992, Godeny_1990
108 Yu_H_2012 DC-SIGN (CD209) Promoter −336 A/G (rs4804803) Polymorphism Associated with Susceptibility of Kawasaki Disease Yu, Hong-Ren; Chang, Wei-Pin; Wang, Lin; Lin, Ying-Jui; Liang, Chi-Di; Yang, Kuender D.; Kuo, Chiu-Ming; Huang, Yi-Chuan; Chang, Wei-Chiao; Kuo, Ho-Chang 2012 2012-05-02 COMM-USE N PMC3354554 22629172.0 10.1100/2012/634835 zudnu71a 0.477659 Zhao_2013, Hansen_2018, Ban_J_2018, Lee_S_2016 Kuo_H_2014, Zheng_2011, Yang_2011, Chan_2010
109 Kosiol_2008 Patterns of Positive Selection in Six Mammalian Genomes Kosiol, Carolin; Vinař, Tomáš; da Fonseca, Rute R.; Hubisz, Melissa J.; Bustamante, Carlos D.; Nielsen, Rasmus; Siepel, Adam 2008 2008-08-01 None N PMC2483296 18670650.0 10.1371/journal.pgen.1000144 es5t9kvt 0.477304 Francis_2016, Chang_2011, Wang_2007, Zheng_2008, Schlub_2018 Evans_2020, Francis_2016, Walker_2011
110 Haralambieva_2011 Genetic polymorphisms in host antiviral genes: Associations with humoral and cellular immunity to measles vaccine Haralambieva, Iana H.; Ovsyannikova, Inna G.; Umlauf, Benjamin J.; Vierkant, Robert A.; Shane Pankratz, V.; Jacobson, Robert M.; Poland, Gregory A. 2011 2011-11-08 None N PMC3941984 21939710.0 10.1016/j.vaccine.2011.09.043 8pptsdrs 0.475950 Haralambieva_2010, Scagnolari_2012, Wang_2010, Astudillo_2019 Haralambieva_2014, Haralambieva_2010, Dettogni_2013
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112 Torres_2010 Role of the IFNG +874T/A polymorphism in Chagas disease in a Colombian population Torres, Orlando A.; Calzada, José E.; Beraún, Yasmina; Morillo, Carlos A.; González, Antonio; González, Clara I.; Martín, Javier 2010 2010-07-31 PMC N PMC7106279 20359550.0 10.1016/j.meegid.2010.03.009 whw2pq1f 0.474018 Wang_2010, Scagnolari_2012, Hamano_2005, Zhao_2012 Matos_2007, Hamano_2005, Amiri_2017, Liu_C_2016
113 Anwar_2020 Insights into The Codon Usage Bias of 13 Severe Acute Respiratory Syndrome Coronavirus 2 (SARS-CoV-2) Isolates from Different Geo-locations Ali Mostafa Anwar; Saif M. Khodary 2020 2020-04-02 BioRxiv Y 10.1101/2020.04.01.019463 ooj9yqbx 0.472889 Gu_W_2004, Liu_Y_2010, Zhang_2014, Liu_Y_2011, Xu_X_2019 Tort_2020, Gu_H_2020, Chen_2017, Ren_X_2008
114 Fitzsimmons_2018 A speed-fidelity trade-off determines the mutation rate and virulence of an RNA virus William Fitzsimmons; Robert J. Woods; John T. McCrone; Andrew Woodman; Jamie J. Arnold; Madhumita Yennawar; Richard Evans; Craig E. Cameron; Adam S. Lauring 2018 2018-04-27 BioRxiv N 10.1101/309880 8p24gszj 0.472080 Simon-Loriere_2011, Mandary_2019, Berkhout_2006, Holmes_2007, Belshaw_2008 Fitzsimmons_2018, Van_Slyke_2015
115 Miller_2016 Brief review of the chicken Major Histocompatibility Complex: the genes, their distribution on chromosome 16, and their contributions to disease resistance Miller, Marcia M.; Taylor, Robert L. 2016 2016-06-17 None N PMC4988538 26740135.0 10.3382/ps/pev379 5024jocw 0.466971 Li_D_2019, Wang_2007, Hyde_2015, Baranov_2009, Yuhki_1994 Plasil_2016, Russell_2018, Yuhki_1994, Kruskall_1990
116 He_J_2006 Association of SARS susceptibility with single nucleic acid polymorphisms of OAS1 and MxA genes: a case-control study He, Jing; Feng, Dan; de Vlas, Sake J; Wang, Hongwei; Fontanet, Arnaud; Zhang, Panhe; Plancoulaine, Sabine; Tang, Fang; Zhan, Lin; Yang, Hong; Wang, Tianbao; Richardus, Jan H; Habbema, J Dik F; Cao, Wuchun 2006 2006-07-06 COMM-USE N PMC1550407 16824203.0 10.1186/1471-2334-6-106 ub9dtgup 0.465874 Tang_2014, Hamano_2005, Zhao_2012, Chen_2018 Hamano_2005, Wang_2008, Zhu_X_2011, Wang_2009
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118 Srivastava_2017 Genomes of the Mouse Collaborative Cross Srivastava, Anuj; Morgan, Andrew P.; Najarian, Maya L.; Sarsani, Vishal Kumar; Sigmon, J. Sebastian; Shorter, John R.; Kashfeen, Anwica; McMullan, Rachel C.; Williams, Lucy H.; Giusti-Rodríguez, Paola; Ferris, Martin T.; Sullivan, Patrick; Hock, Pablo; Miller, Darla R.; Bell, Timothy A.; McMillan, Leonard; Churchill, Gary A.; de Villena, Fernando Pardo-Manuel 2017 2017-06-06 COMM-USE N PMC5499171 28592495.0 10.1534/genetics.116.198838 41st827n 0.460826 Chang_2011, Francis_2016, Harel_2019, Zheng_2008 Graham_2017, Shorter_2019, Aylor_2011, Gralinski_2015
119 Tang_2008 IL-12 RB1 Genetic Variants Contribute to Human Susceptibility to Severe Acute Respiratory Syndrome Infection among Chinese Tang, Fang; Liu, Wei; Zhang, Fang; Xin, Zhong-Tao; Wei, Mao-Ti; Zhang, Pan-He; Yang, Hong; Ly, Hinh; Cao, Wu-Chun 2008 2008-05-14 COMM-USE N PMC2367437 18478121.0 10.1371/journal.pone.0002183 01o15wd4 0.460713 Scagnolari_2012, Tang_2014, Astudillo_2019, Leung_2007, Zhao_2012 Torres_2010, Shen_2013, Liu_C_2016, Doyle_2010
120 McLellan_2005 Conservation of pregnancy-specific glycoprotein (PSG) N domains following independent expansions of the gene families in rodents and primates McLellan, Andrew S; Zimmermann, Wolfgang; Moore, Tom 2005 2005-06-29 COMM-USE N PMC1185527 15987510.0 10.1186/1471-2148-5-39 3ylcev0n 0.459951 Hänske_2020, UNKNOWN_1987, Ivarsson_2012, Li_D_2019, Volmer_2010 McCuaig_1993, Levy_2000, Levy_2000, Chang_2013
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122 Kalia_2016 A comprehensive in silico analysis of non-synonymous and regulatory SNPs of human MBL2 gene Kalia, Namarta; Sharma, Aarti; Kaur, Manpreet; Kamboj, Sukhdev Singh; Singh, Jatinder 2016 2016-06-21 COMM-USE N PMC4916122 27390651.0 10.1186/s40064-016-2543-4 i66vbuab 0.459177 Wu_G_2005, Wang_2007, Xu_J_2016, Callison_1999 Mo_J_2013, Chen_2015, Dettogni_2013, Liu_C_2016
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125 Chen_2015 Functional variants regulating LGALS1 (Galectin 1) expression affect human susceptibility to influenza A(H7N9) Chen, Yu; Zhou, Jie; Cheng, Zhongshan; Yang, Shigui; Chu, Hin; Fan, Yanhui; Li, Cun; Wong, Bosco Ho-Yin; Zheng, Shufa; Zhu, Yixin; Yu, Fei; Wang, Yiyin; Liu, Xiaoli; Gao, Hainv; Yu, Liang; Tang, Linglin; Cui, Dawei; Hao, Ke; Bossé, Yohan; Obeidat, Ma′en; Brandsma, Corry-Anke; Song, You-Qiang; To, Kelvin Kai-Wang; Sham, Pak Chung; Yuen, Kwok-Yung; Li, Lanjuan 2015 2015-02-17 COMM-USE N PMC4649671 25687228.0 10.1038/srep08517 dh27xm52 0.456119 Chen_2018, Zhang_2015, Leung_2007, Benjafield_2004, Callison_1999 Zhu_X_2011, Cheng_2015, Wang_2009, Maestri_2015
126 Fisher_2011 Evolution of the Bovine TLR Gene Family and Member Associations with Mycobacterium avium Subspecies paratuberculosis Infection Fisher, Colleen A.; Bhattarai, Eric K.; Osterstock, Jason B.; Dowd, Scot E.; Seabury, Paul M.; Vikram, Meenu; Whitlock, Robert H.; Schukken, Ynte H.; Schnabel, Robert D.; Taylor, Jeremy F.; Womack, James E.; Seabury, Christopher M. 2011 2011-11-30 COMM-USE N PMC3227585 22164200.0 10.1371/journal.pone.0027744 0lut2w17 0.453932 Li_D_2019, Gu_W_2004, Liu_Y_2010, Francis_2016 Ren_X_2008, Russell_2018, Lachheb_2019, Jiang_2017
127 Kuo_H_2012 CD40 Gene Polymorphisms Associated with Susceptibility and Coronary Artery Lesions of Kawasaki Disease in the Taiwanese Population Kuo, Ho-Chang; Chao, Mei-Chyn; Hsu, Yu-Wen; Lin, Ying-Chi; Huang, Ying-Hsien; Yu, Hong-Ren; Hou, Ming-Feng; Liang, Chi-Di; Yang, Kuender D.; Chang, Wei-Chiao; Wang, Chih-Lu 2012 2012-05-02 COMM-USE N PMC3354684 22645426.0 10.1100/2012/520865 3e382dhr 0.451497 Wang_2010, Lee_S_2016, Scagnolari_2012, Mo_J_2013 Yang_2011, Kuo_H_2014, Eleftheriou_2013, Lee_K_2007
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140 Kuo_H_2014 Genetic Variants of CD209 Associated with Kawasaki Disease Susceptibility Kuo, Ho-Chang; Huang, Ying-Hsien; Chien, Shu-Chen; Yu, Hong-Ren; Hsieh, Kai-Sheng; Hsu, Yu-Wen; Chang, Wei-Chiao 2014 2014-08-22 COMM-USE N PMC4141786 25148534.0 10.1371/journal.pone.0105236 8rxaih7e 0.436959 Leung_2007, Wu_S_2018, Wang_2010, Astudillo_2019, Chen_2018 Yang_2011, Kuo_H_2012, Lee_K_2007, Eleftheriou_2013
141 Shorter_2019 Whole Genome Sequencing and Progress Toward Full Inbreeding of the Mouse Collaborative Cross Population Shorter, John R.; Najarian, Maya L.; Bell, Timothy A.; Blanchard, Matthew; Ferris, Martin T.; Hock, Pablo; Kashfeen, Anwica; Kirchoff, Kathryn E.; Linnertz, Colton L.; Sigmon, J. Sebastian; Miller, Darla R.; McMillan, Leonard; Pardo-Manuel de Villena, Fernando 2019 2019-03-11 COMM-USE N PMC6505143 30858237.0 10.1534/g3.119.400039 oudbcvx5 0.435200 Chang_2011, Francis_2016, Zheng_2008, Harel_2019 Srivastava_2017, Sun_J_2018
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144 He_W_2019 Comprehensive codon usage analysis of porcine deltacoronavirus He, Wei; Wang, Ningning; Tan, Jimin; Wang, Ruyi; Yang, Yichen; Li, Gairu; Guan, Haifei; Zheng, Yuna; Shi, Xinze; Ye, Rui; Su, Shuo; Zhou, Jiyong 2019 2019-12-31 PMC N PMC7111727 31536759.0 10.1016/j.ympev.2019.106618 oununr9g 0.433866 Gu_W_2004, Zhang_2014, Xu_X_2019, Liu_Y_2011, Francis_2016 Wang_2015, Sun_W_2020, Zhang_2018, Lachheb_2019
145 Khor_2010 CISH and Susceptibility to Infectious Diseases Khor, Chiea C.; Vannberg, Fredrik O.; Chapman, Stephen J.; Guo, Haiyan; Wong, Sunny H.; Walley, Andrew J.; Vukcevic, Damjan; Rautanen, Anna; Mills, Tara C.; Chang, Kwok-Chiu; Kam, Kai-Man; Crampin, Amelia C.; Ngwira, Bagrey; Leung, Chi-Chiu; Tam, Cheuk-Ming; Chan, Chiu-Yeung; Sung, Joseph J.Y.; Yew, Wing-Wai; Toh, Kai-Yee; Tay, Stacey K.H.; Kwiatkowski, Dominic; Lienhardt, Christian; Hien, Tran-Tinh; Day, Nicholas P.; Peshu, Nobert; Marsh, Kevin; Maitland, Kathryn; Scott, J. Anthony; Williams, Thomas N.; Berkley, James A.; Floyd, Sian; Tang, Nelson L.S.; Fine, Paul E.M.; Goh, Denise L.M.; Hill, Adrian V.S. 2010 2010-06-03 PMC N PMC3646238 20484391.0 10.1056/nejmoa0905606 7xc01lnc 0.433803 Haasnoot_2010, Nogales_2019, Berkhout_2006, Kolls_2012, Grewelle_2020 Torres_2010, Stawowczyk_2018
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147 Tian_2018 The adaptation of codon usage of +ssRNA viruses to their hosts Tian, Lin; Shen, Xuejuan; Murphy, Robert W.; Shen, Yongyi 2018 2018-09-30 PMC N PMC7106036 29864509.0 10.1016/j.meegid.2018.05.034 wgeuh1i2 0.433153 Bahir_2009, Denison_2008, Gu_W_2004, Hernandez-Alias_2020 Bahir_2009, Sheikh_2020, Liu_Y_2011, van_Weringh_2011
148 Yang_2011 Lack of Association between CLEC5A Gene Single-Nucleotide Polymorphisms and Kawasaki Disease in Taiwanese Children Yang, Ya-Ling; Chang, Wei-Pin; Hsu, Yu-Wen; Chen, Wei-Chiao; Yu, Hong-Ren; Liang, Chi-Di; Tsai, Yao-Ting; Huang, Ying-Hsien; Yang, Kuender D.; Kuo, Ho-Chang; Chang, Wei-Chiao 2011 2011-12-22 PMC N PMC3318896 22536019.0 10.1155/2012/398628 gvzs9vxr 0.431005 Scagnolari_2012, Astudillo_2019, Wang_2010, Nogales_2019 Kuo_H_2014, Kuo_H_2012, Torres_2010, Mo_J_2013
149 Lupiañez_2016 Common Genetic Polymorphisms within NFκB-Related Genes and the Risk of Developing Invasive Aspergillosis Lupiañez, Carmen B.; Villaescusa, María T.; Carvalho, Agostinho; Springer, Jan; Lackner, Michaela; Sánchez-Maldonado, José M.; Canet, Luz M.; Cunha, Cristina; Segura-Catena, Juana; Alcazar-Fuoli, Laura; Solano, Carlos; Fianchi, Luana; Pagano, Livio; Potenza, Leonardo; Aguado, José M.; Luppi, Mario; Cuenca-Estrella, Manuel; Lass-Flörl, Cornelia; Einsele, Hermann; Vázquez, Lourdes; Ríos-Tamayo, Rafael; Loeffler, Jurgen; Jurado, Manuel; Sainz, Juan 2016 2016-08-12 COMM-USE N PMC4982195 27570521.0 10.3389/fmicb.2016.01243 lx8lowf7 0.430780 Zhang_2014, Scagnolari_2012, Nogales_2019, Francis_2016, Li_C_2018 Torres_2010, Liu_C_2016, Wang_2014, Ansuini_2013
150 Brandão_2012 Avian coronavirus Spike Glycoprotein Ectodomain Shows a Low Codon Adaptation to Gallus gallus with Virus-Exclusive Codons in Strategic Amino Acids Positions Brandão, Paulo E. 2012 2012-08-19 PMC N PMC7079877 22903606.0 10.1007/s00239-012-9515-2 owenhaln 0.430477 Gu_W_2004, Liu_Y_2010, Zhang_2014, Xu_X_2019, Morikawa_1992 Ren_X_2008, Goldberg_1991, Jouvenne_1992
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152 Lorè_2020 Collaborative Cross Mice Yield Genetic Modifiers for Pseudomonas aeruginosa Infection in Human Lung Disease Lorè, Nicola Ivan; Sipione, Barbara; He, Gengming; Strug, Lisa J.; Atamni, Hanifa J.; Dorman, Alexandra; Mott, Richard; Iraqi, Fuad A.; Bragonzi, Alessandra 2020 2020-03-03 COMM-USE N PMC7064750 32127447.0 10.1128/mbio.00097-20 etx1iegm 0.429740 Francis_2016, Haasnoot_2010, Callison_1999, Xu_J_2016, Wang_2007 Gralinski_2015, Plante_2020, Loré_2018, Gralinski_2017
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154 Pedersen_2016 Natural resistance to experimental feline infectious peritonitis virus infection is decreased rather than increased by positive genetic selection Pedersen, Niels C.; Liu, Hongwei; Durden, Monica; Lyons, Leslie A. 2016 2016-03-31 PMC N PMC7112786 26964713.0 10.1016/j.vetimm.2016.01.002 lqcoivr1 0.427844 Francis_2016, Hao_W_2011, Wang_2013, Chang_2011, Longdon_2018 Marlier_2006, Addie_2004, Pedersen_2014, Ehmann_2018
155 Yang_2000 Statistical methods for detecting molecular adaptation Yang, Ziheng; Bielawski, Joseph P. 2000 2000-12-01 PMC N PMC7134603 11114436.0 10.1016/s0169-5347(00)01994-7 jf2mj16z 0.427169 Gamermann_2014, Chang_2011, Gu_W_2004, Sen_D_2018 Hicks_2014, van_Hemert_2007
156 Oreper_2017 Inbred Strain Variant Database (ISVdb): A Repository for Probabilistically Informed Sequence Differences Among the Collaborative Cross Strains and Their Founders Oreper, Daniel; Cai, Yanwei; Tarantino, Lisa M.; de Villena, Fernando Pardo-Manuel; Valdar, William 2017 2017-06-05 COMM-USE N PMC5473744 28592645.0 10.1534/g3.117.041491 hstomkk5 0.426983 Cheng_2013, Chang_2011, Montgomery_2004, Harel_2019, Saw_A_2019 Srivastava_2017, Shorter_2019, Aylor_2011, Graham_2017
157 Whitney_2019 Breed-specific variations in the coding region of toll-like receptor 4 in the domestic cat Whitney, J.; Haase, B.; Beatty, J.; Barrs, V.R. 2019 2019-03-31 PMC N PMC7126157 30885307.0 10.1016/j.vetimm.2019.02.009 lcmpmx20 0.425868 Gu_W_2004, Callison_1999, Zhang_2014, Liu_Y_2010 Lachheb_2019, Bank-Wolf_2014, Ren_X_2008, Hamano_2005
158 Haralambieva_2010 2′-5′-Oligoadenylate synthetase single-nucleotide polymorphisms and haplotypes are associated with variations in immune responses to rubella vaccine Haralambieva, Iana H.; Dhiman, Neelam; Ovsyannikova, Inna G.; Vierkant, Robert A.; Pankratz, V. Shane; Jacobson, Robert M.; Poland, Gregory A. 2010 2010-04-30 None N PMC2842477 20079393.0 10.1016/j.humimm.2010.01.004 1d0olfki 0.425146 Montefiori_2007, Kolls_2012, Dixit_2013, Ban_J_2018 Wu_S_2018, Hamano_2005, Noguchi_2013
159 Zhang_2013 Interferon-induced transmembrane protein-3 genetic variant rs12252-C is associated with severe influenza in Chinese individuals Zhang, Yong-Hong; Zhao, Yan; Li, Ning; Peng, Yan-Chun; Giannoulatou, Eleni; Jin, Rong-Hua; Yan, Hui-Ping; Wu, Hao; Liu, Jin-Hua; Liu, Ning; Wang, Da-Yan; Shu, Yue-Long; Ho, Ling-Pei; Kellam, Paul; McMichael, Andrew; Dong, Tao 2013 2013-01-29 None N PMC3562464 23361009.0 10.1038/ncomms2433 hor76pqs 0.424720 Scagnolari_2012, Williams_2007, Yasui_2016, Ferdinands_2011 Hamano_2005, Zhang_2015, Shen_2013, Torres_2010
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161 Barreiro_2006 DC-SIGN Interacts with Mycobacterium leprae but Sequence Variation in This Lectin Is Not Associated with Leprosy in the Pakistani Population Barreiro, Luis B.; Quach, Hélène; Krahenbuhl, James; Khaliq, Shagufta; Mohyuddin, Aisha; Mehdi, S. Qasim; Gicquel, Brigitte; Neyrolles, Olivier; Quintana-Murci, Lluı́s 2006 2006-02-28 PMC N PMC7115659 16698431.0 10.1016/j.humimm.2006.02.028 93r1aokh 0.419150 Lester_2014, Bermejo-Jambrina_2018, Monteiro_2017, Geijtenbeek_2009 Berry_2005, Ansuini_2013, Barreiro_2007, Giner_2020
162 Karaman_2005 Comparisons of substitution, insertion and deletion probes for resequencing and mutational analysis using oligonucleotide microarrays Karaman, Mazen W.; Groshen, Susan; Lee, Chi-Chiang; Pike, Brian L.; Hacia, Joseph G. 2005 2005-02-18 PMC N PMC549431 15722479.0 10.1093/nar/gni034 bbvxu8op 0.419043 Jiang_2011, Phillippy_2009, Whiteford_2005, Morikawa_1992 Nowak_1984, Tan_J_2009
163 Simon-Loriere_2009 Molecular Mechanisms of Recombination Restriction in the Envelope Gene of the Human Immunodeficiency Virus Simon-Loriere, Etienne; Galetto, Roman; Hamoudi, Meriem; Archer, John; Lefeuvre, Pierre; Martin, Darren P.; Robertson, David L.; Negroni, Matteo 2009 2009-05-08 COMM-USE N PMC2671596 19424420.0 10.1371/journal.ppat.1000418 4tvrhpss 0.419043 Simon-Loriere_2011, Holmes_2007, Wang_2018, Trobaugh_2017 Muslin_2019, Brun_2014
164 Fan_Y_2007 A missense polymorphism in porcine interferon-γ cDNA affects antiviral activity of the protein variant Fan, Yi-Hsin; Chow, Kuan-Chih; Huang, San-Yuan; Chi, Lang-Ming; Huang, Chienjin; Chiou, Shiow-Her 2007 2007-07-31 PMC N PMC7112673 17416419.0 10.1016/j.molimm.2007.02.029 8qvhu3hd 0.415556 Callison_1999, Jendrach_2014, Luytjes_1988, Wu_G_2005, Leibowitz_1988 Rimstad_1995, Zhang_2010, Brun_2014, Levy_2000
165 Nogales_2019 Host Single Nucleotide Polymorphisms Modulating Influenza A Virus Disease in Humans Nogales, Aitor; L. DeDiego, Marta 2019 2019-09-30 COMM-USE N PMC6963926 31574965.0 10.3390/pathogens8040168 cb80ntxs 0.415535 Trobaugh_2017, Francis_2016, Haasnoot_2010, Grewelle_2020 Dettogni_2013, Callaghan_2007, Fumagalli_2010
166 Ling_2010 Characterization of the major histocompatibility complex class II DOB, DPB1, and DQB1 alleles in cynomolgus macaques of Vietnamese origin Ling, Fei; Wei, Li-qiong; Wang, Tao; Wang, Hai-bo; Zhuo, Min; Du, Hong-li; Wang, Ju-fang; Wang, Xiao-ning 2010 2010-12-04 PMC N PMC7080152 21132285.0 10.1007/s00251-010-0498-0 7v2s73gi 0.415388 Karl_2013, Yuhki_1994, O’Connor_2007, Lan_H_2019, Callison_1999 Ling_2012, Huang_2019, O’Connor_2007, Plasil_2016
167 Tu_X_2015 Functional polymorphisms of the CCL2 and MBL genes cumulatively increase susceptibility to severe acute respiratory syndrome coronavirus infection Tu, Xinyi; Chong, Wai Po; Zhai, Yun; Zhang, Hongxing; Zhang, Fang; Wang, Shixin; Liu, Wei; Wei, Maoti; Siu, Nora Ho On; Yang, Hao; Yang, Wanling; Cao, Wuchun; Lau, Yu Lung; He, Fuchu; Zhou, Gangqiao 2015 2015-07-31 PMC N PMC7112636 25818534.0 10.1016/j.jinf.2015.03.006 p6jl9gxf 0.415160 Callison_1999, Zhang_2014, Gu_W_2004, Liu_Y_2010, Scagnolari_2012 Zhu_X_2011, Hamano_2005, Torres_2010, Liu_C_2016
168 Li_H_2009 The neck-region polymorphism of DC-SIGNR in peri-centenarian from Han Chinese Population Li, Hui; Wang, Cheng-Ye; Wang, Jia-Xin; Tang, Nelson Leung-Sang; Xie, Liang; Gong, Yuan-Ying; Yang, Zhao; Xu, Liang-You; Kong, Qing-Peng; Zhang, Ya-Ping 2009 2009-12-14 COMM-USE N PMC2797785 20003397.0 10.1186/1471-2350-10-134 44dduerf 0.415142 Gu_W_2004, Zhang_2014, Francis_2016, Callison_1999, Nogales_2019 Xu_Y_2010, Barreiro_2007, Torres_2010, Amiri_2017
169 Van_Slyke_2015 Sequence-Specific Fidelity Alterations Associated with West Nile Virus Attenuation in Mosquitoes Van Slyke, Greta A.; Arnold, Jamie J.; Lugo, Alex J.; Griesemer, Sara B.; Moustafa, Ibrahim M.; Kramer, Laura D.; Cameron, Craig E.; Ciota, Alexander T. 2015 2015-06-26 COMM-USE N PMC4482725 26114757.0 10.1371/journal.ppat.1005009 o5eoxqu8 0.414919 Rice_1992, den_Boon_2010, Trobaugh_2017, Berkhout_2006, Auewarakul_2005 Kautz_2018
170 Hünemeier_2012 Evolutionary Responses to a Constructed Niche: Ancient Mesoamericans as a Model of Gene-Culture Coevolution Hünemeier, Tábita; Amorim, Carlos Eduardo Guerra; Azevedo, Soledad; Contini, Veronica; Acuña-Alonzo, Víctor; Rothhammer, Francisco; Dugoujon, Jean-Michel; Mazières, Stephane; Barrantes, Ramiro; Villarreal-Molina, María Teresa; Paixão-Côrtes, Vanessa Rodrigues; Salzano, Francisco M.; Canizales-Quinteros, Samuel; Ruiz-Linares, Andres; Bortolini, Maria Cátira 2012 2012-06-21 COMM-USE N PMC3380856 22768049.0 10.1371/journal.pone.0038862 05y53vbg 0.414835 Zheng_2008, Chang_2011, Li_C_2018, McCoy_2003, Francis_2016 Tibayrenc_2015, Becker_2019, Harper_2013
171 Rathore_2007 Role of Homozygous DC-SIGNR 5/5 Tandem Repeat Polymorphism in HIV-1 Exposed Seronegative North Indian Individuals Rathore, Anurag; Chatterjee, Animesh; Sivarama, P.; Yamamoto, Naohiko; Dhole, Tapan N. 2007 2007-09-18 PMC N PMC7086598 17876530.0 10.1007/s10875-007-9131-x xorie9og 0.414622 Zhang_2010, Clapham_1991, Tallmadge_2008, Gramberg_2006 Ngandu_2009, Rathore_2008, Li_H_2012
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175 Sainz_2012 Dectin-1 and DC-SIGN Polymorphisms Associated with Invasive Pulmonary Aspergillosis Infection Sainz, Juan; Lupiáñez, Carmen Belén; Segura-Catena, Juana; Vazquez, Lourdes; Ríos, Rafael; Oyonarte, Salvador; Hemminki, Kari; Försti, Asta; Jurado, Manuel 2012 2012-02-27 COMM-USE N PMC3288082 22384201.0 10.1371/journal.pone.0032273 3wok0n21 0.413856 Hansen_2018, Ban_J_2018, Wang_2010, Scagnolari_2012, Gramberg_2006 Vilela_2013, Yang_2019, Barreiro_2006, Kang_2015
176 Ahn_I_2006 Genomic Analysis of Influenza A Viruses, including Avian Flu (H5N1) Strains Ahn, Insung; Jeong, Byeong-Jin; Bae, Se-Eun; Jung, Jin; Son, Hyeon S. 2006 2006-07-21 PMC N PMC7088104 16858618.0 10.1007/s10654-006-9031-z t6h7d8me 0.413668 Lu_P_2016, Yasui_2016, Gu_W_2004, Walker_2010, van_Riel_2007 Ren_X_2008, Ren_C_2019, Lachheb_2019
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178 López‐Jiménez_2018 Distribution of IFITM3 polymorphism (dbSNP: rs12252) in mestizo populations in four states of Mexico López‐Jiménez, J. J.; Peña‐Iñiguez, D. I.; Fletes‐Rayas, A. L.; Flores‐Martínez, S. E.; Sánchez‐Corona, J.; Rosales‐Gomez, R. C.; Montoya‐Fuentes, H. 2018 2018-03-25 PMC N PMC7165788 29575524.0 10.1111/iji.12361 nw2y03ss 0.411446 Lim_T_2012, Salem_2017, Kim_D_2016, Wang_2014
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185 Mills_2013 IFITM3 and Susceptibility to Respiratory Viral Infections in the Community Mills, Tara C.; Rautanen, Anna; Elliott, Katherine S.; Parks, Tom; Naranbhai, Vivek; Ieven, Margareta M.; Butler, Christopher C.; Little, Paul; Verheij, Theo; Garrard, Chris S.; Hinds, Charles; Goossens, Herman; Chapman, Stephen; Hill, Adrian V. S. 2013 2013-08-30 PMC N PMC3952664 23997235.0 10.1093/infdis/jit468 n6exqq6u 0.407977 Scagnolari_2012, Yasui_2016, Coverstone_2019, Chieochansin_2010 Sedeyn_2019, Agoti_2019, Espinosa_2017
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201 Parera_2006 HIV-1 Protease Catalytic Efficiency Effects Caused by Random Single Amino Acid Substitutions Parera, Mariona; Fernàndez, Guerau; Clotet, Bonaventura; Martínez, Miguel Angel 2006 2006-11-07 PMC N PMC7107532 17090696.0 10.1093/molbev/msl168 8eian8tz 0.395341 Wu_G_2005, Gu_W_2004, Morikawa_1992, Brake_2008 Masante_2015, Klaver_2017
202 Barreiro_2009 High-Throughput SNP Genotyping: Combining Tag SNPs and Molecular Beacons Barreiro, Luis B.; Henriques, Ricardo; Mhlanga, Musa M. 2009 2009-04-20 PMC N PMC7121513 19768600.0 10.1007/978-1-60327-411-1_17 0ke31s2a 0.394911 Chang_2011, Harel_2019, Gresham_2008, Phillippy_2009 Tan_J_2009, Kalia_2016, Dettogni_2013, Liu_X_2018
203 Golovko_2013 Genetic susceptibility to feline infectious peritonitis in Birman cats Golovko, Lyudmila; Lyons, Leslie A.; Liu, Hongwei; Sørensen, Anne; Wehnert, Suzanne; Pedersen, Niels C. 2013 2013-07-31 None N PMC4342855 23619280.0 10.1016/j.virusres.2013.04.006 049en1wr 0.394866 Chieochansin_2010, Francis_2016, Callison_1999, Liu_S_2013, Li_W_2012 Addie_2004, Pedersen_2014, Hartmann_2008, Hsieh_2014
204 Stoltzfus_2015 On the Causes of Evolutionary Transition:Transversion Bias Stoltzfus, Arlin; Norris, Ryan W. 2015 2015-11-25 PMC N PMC7107541 26609078.0 10.1093/molbev/msv274 9zvyu6ly 0.394685 Wu_G_2005, Gu_W_2004, Chang_2011, Francis_2016, Wu_G_2003 Stoltzfus_2015, Somovilla_2019, Garcia_2018, Parera_2006
205 Scagnolari_2012 Evaluation of interleukin 28B single nucleotide polymorphisms in infants suffering from bronchiolitis Scagnolari, Carolina; Midulla, Fabio; Riva, Elisabetta; Monteleone, Katia; Solimini, Angelo; Bonci, Enea; Cangiano, Giulia; Papoff, Paola; Moretti, Corrado; Pierangeli, Alessandra; Antonelli, Guido 2012 2012-05-31 PMC N PMC7114428 22374338.0 10.1016/j.virusres.2012.02.018 qfkrq3bf 0.393766 Astudillo_2019, Li_F_2018, Ferdinands_2011, Zhang_2014 Lee_F_2011, Hwang_2018, Yang_2011, Espinosa_2017
206 Barr_2016 Chapter 2 Genetic Instability of RNA Viruses Barr, J.N.; Fearns, R. 2016 2016-12-31 PMC N PMC7149711 10.1016/b978-0-12-803309-8.00002-1 f8ab7413 0.393548 Rice_1992, Wang_2018, Denison_2008, Cullen_2009, Trobaugh_2017
207 Goodman_2010 Phylogeny and biogeography of western Indian Ocean Rousettus (Chiroptera: Pteropodidae) Goodman, Steven M.; Chan, Lauren M.; Nowak, Michael D.; Yoder, Anne D. 2010 2010-06-16 PMC N PMC7108659 10.1644/09-mamm-a-283.1 49aazgob 0.391985 Lim_T_2012, Kosoy_2010, Xu_L_2018, Nie_F_2018 Marker_2007, East_2013, Ramírez_2014
208 Amiri_2017 Mannose-Binding Lectin (MBL) gene polymorphisms in susceptibility to pulmonary tuberculosis among the Lur population of Lorestan Province of Iran Amiri, Ali; Sabooteh, Toomaj; Shahsavar, Farhad; Anbari, Khatereh; Pouremadi, Flora 2017 2017-05-04 COMM-USE N PMC5432655 28540182.0 10.1016/j.gdata.2017.05.005 pm4aknio 0.391913 Chen_2018, Leung_2007, Wang_2010, Tang_2014, Moghadampour_2016 Liu_C_2016, Ruskamp_2008, Chen_2015
209 Li_F_2018 Association of Interleukin-17F gene polymorphisms with susceptibility to severe enterovirus 71 infection in Chinese children Li, Fei; Liu, Peipei; Guo, Ya; Han, Zhenliang; Liu, Yedan; Wang, Yuanyuan; Song, Long; Cheng, Jianguo; Chen, Zongbo 2018 2018-03-16 PMC N PMC7086816 29549443.0 10.1007/s00705-018-3807-9 8jmh6iuz 0.391794 Scagnolari_2012, Zhang_2013, Ferdinands_2011, Kumar_2012 Torres_2010, Shen_2013, Yang_2011
210 Choby_2018 Molecular Basis for the Evolution of Species-Specific Hemoglobin Capture by Staphylococcus aureus Choby, Jacob E.; Buechi, Hanna B.; Farrand, Allison J.; Skaar, Eric P.; Barber, Matthew F. 2018 2018-11-20 COMM-USE N PMC6247092 30459189.0 10.1128/mbio.01524-18 4c8lauif 0.390905 Wilson_2012, Berkhout_2006, Longdon_2018, Longdon_2017, Wang_2018 Choby_2018, Michalska_2018, Hedblom_2018
211 Li_L_2018 Genomic organization and adaptive evolution of IGHC genes in marine mammals Li, Lili; Rong, Xinghua; Li, Guiting; Wang, Yingying; Chen, Bingyao; Ren, Wenhua; Yang, Guang; Xu, Shixia 2018 2018-07-31 None N PMC7112648 29723770.0 10.1016/j.molimm.2018.04.011 c94gpfrl 0.390194 Wang_2018, Bahir_2009, Longdon_2018, Longdon_2017 Hayward_2018, Walker_2011, Kammerer_2010, Russell_2018
212 Luo_C_2011 VP-1 Quasispecies in Human Infection with Polyomavirus BK Luo, Chunqing; Hirsch, Hans; Kant, Jeffrey; Randhawa, Parmjeet 2011 2011-11-03 PMC N PMC3220780 22052529.0 10.1002/jmv.22147 43dy5siv 0.390084 Auewarakul_2005, Chieochansin_2010, Armesto_2007, Rice_1992, Gu_W_2004 Ren_X_2008, Lachheb_2019, Galmès_2012, Linenberger_1995
213 Luo_C_2014 A genome-wide association study identifies major loci affecting the immune response against infectious bronchitis virus in chicken Luo, Chenglong; Qu, Hao; Ma, Jie; Wang, Jie; Hu, Xiaoxiang; Li, Ning; Shu, Dingming 2014 2014-01-31 PMC N PMC7106259 24333371.0 10.1016/j.meegid.2013.12.004 t2cbt6of 0.388536 Volmer_2010, Auewarakul_2005, Lu_P_2016, Trobaugh_2017, Berkhout_2006 Lachheb_2019, Ren_X_2008
214 Graepel_2019 Fitness barriers limit reversion of a proofreading-deficient coronavirus Kevin W. Graepel; Maria L. Agostini; Xiaotao Lu; Nicole R. Sexton; Mark R. Denison 2019 2019-04-26 BioRxiv N 10.1101/618249 8pr10j88 0.388179 Volmer_2010, Berkhout_2006, Rice_1992, Stork_2011, den_Boon_2010 Case_2017
215 Yu_Y_2017 Cytokines Interleukin 4 (IL-4) and Interleukin 10 (IL-10) Gene Polymorphisms as Potential Host Susceptibility Factors in Virus-Induced Encephalitis Yu, Ying; Chen, Ying; Wang, Feng-Ling; Sun, Jing; Li, Hai-Jun; Liu, Jia-Ming 2017 2017-09-22 NONCOMM N PMC5683680 28935853.0 10.12659/msm.904364 t40nnh7h 0.384860 Zhao_2012, WONG_2004, Kulcsar_2016, Kumar_2012 Tang_2009, Aparicio_2017, Abushouk_2019, Fahal_2018
216 Wang_2011 DC-SIGN (CD209) Promoter −336 A/G Polymorphism Is Associated with Dengue Hemorrhagic Fever and Correlated to DC-SIGN Expression and Immune Augmentation Wang, Lin; Chen, Rong-Fu; Liu, Jien-Wei; Lee, Ing-Kit; Lee, Chiu-Ping; Kuo, Ho-Chang; Huang, Shau-Ku; Yang, Kuender D. 2011 2011-01-04 COMM-USE N PMC3014977 21245921.0 10.1371/journal.pntd.0000934 wlnclcvk 0.383711 Yasui_2016, Scagnolari_2012, Tallmadge_2008, Wang_2012 Chan_2010, Zheng_2011, Matos_2007, Torres_2010
217 Levi_2010 Fidelity Variants of RNA Dependent RNA Polymerases Uncover an Indirect, Mutagenic Activity of Amiloride Compounds Levi, Laura I.; Gnädig, Nina F.; Beaucourt, Stéphanie; McPherson, Malia J.; Baron, Bruno; Arnold, Jamie J.; Vignuzzi, Marco 2010 2010-10-28 COMM-USE N PMC2965762 21060812.0 10.1371/journal.ppat.1001163 fnvwcebr 0.382995 Stork_2011, Meyerson_2017, Kang_2009, Masante_2015, Rice_1992 Wilde_2019, Sasvari_2009
218 Daugherty_2014 Rapid Evolution of PARP Genes Suggests a Broad Role for ADP-Ribosylation in Host-Virus Conflicts Daugherty, Matthew D.; Young, Janet M.; Kerns, Julie A.; Malik, Harmit S. 2014 2014-05-29 COMM-USE N PMC4038475 24875882.0 10.1371/journal.pgen.1004403 c3psvuzp 0.382880 Haasnoot_2010, Trobaugh_2017, Berkhout_2006, Taschuk_2020, Blank_2017 Deng_2019, Sun_D_2016
219 Dilucca_2020 Codon usage and evolutionary rates of the 2019-nCoV genes Maddalena Dilucca; Athanasia Pavlopoulou; Sergio Forcelloni; ANDREA GIANSANTI; Alexandros G Georgakilas 2020 2020-03-27 BioRxiv Y 10.1101/2020.03.25.006569 l9vtsj3e 0.382849 Volmer_2010, Gu_W_2004, Auewarakul_2005, Wu_G_2005, Trobaugh_2017 Sheikh_2020, Lachheb_2019, Ren_X_2008, Gu_W_2004
220 Tang_2020 On the origin and continuing evolution of SARS-CoV-2 Tang, Xiaolu; Wu, Changcheng; Li, Xiang; Song, Yuhe; Yao, Xinmin; Wu, Xinkai; Duan, Yuange; Zhang, Hong; Wang, Yirong; Qian, Zhaohui; Cui, Jie; Lu, Jian 2020 2020-03-03 COMM-USE Y PMC7107875 10.1093/nsr/nwaa036 j99cgsjt 0.382614 Callison_1999, Francis_2016, Volmer_2010, Auewarakul_2005, Hao_W_2011 Boni_2020, Niemeyer_2018, Rockx_2020, Zhang_2020
221 Lloyd_2014 The High Cost of Fidelity Lloyd, Sarah B.; Kent, Stephen J.; Winnall, Wendy R. 2014 2014-01-01 PMC N PMC3887412 24180375.0 10.1089/aid.2013.0153 tzc12gzh 0.382475 Rice_1992, den_Boon_2010, Smith_2012, Trobaugh_2017 Kautz_2018, Arizala_2018
222 Padhi_2008 Positive natural selection in the evolution of human metapneumovirus attachment glycoprotein Padhi, Abinash; Verghese, Bindhu 2008 2008-02-29 PMC N PMC7114232 17931731.0 10.1016/j.virusres.2007.08.014 rws11uel 0.381254 Gu_W_2004, Luytjes_1988, Wu_G_2005, Callison_1999, Liu_Y_2010 Ren_X_2008, Lachheb_2019
223 Wang_2014 Polymorphisms in the feline TNFA and CD209 genes are associated with the outcome of feline coronavirus infection Wang, Ying-Ting; Hsieh, Li-En; Dai, Yu-Rou; Chueh, Ling-Ling 2014 2014-12-16 COMM-USE N PMC4267428 25512064.0 10.1186/s13567-014-0123-6 x4fkja38 0.380934 Chieochansin_2010, Callison_1999, Gu_W_2004, Zhang_2014, Cheun-Arom_2015 Addie_2004, Hsieh_2014, Doki_2013, Chen_2019
224 Cheng_2015 Identification of TMPRSS2 as a Susceptibility Gene for Severe 2009 Pandemic A(H1N1) Influenza and A(H7N9) Influenza Cheng, Zhongshan; Zhou, Jie; To, Kelvin Kai-Wang; Chu, Hin; Li, Cun; Wang, Dong; Yang, Dong; Zheng, Shufa; Hao, Ke; Bossé, Yohan; Obeidat, Ma'en; Brandsma, Corry-Anke; Song, You-Qiang; Chen, Yu; Zheng, Bo-Jian; Li, Lanjuan; Yuen, Kwok-Yung 2015 2015-10-15 PMC N PMC7107393 25904605.0 10.1093/infdis/jiv246 h0ssq8qs 0.379389 Yasui_2016, Gu_W_2004, Herberg_2013, Chieochansin_2010 Zhu_X_2011, Maestri_2015, Shen_2013, Torres_2010
225 Nudel_2019 A large-scale genomic investigation of susceptibility to infection and its association with mental disorders in the Danish population Nudel, Ron; Wang, Yunpeng; Appadurai, Vivek; Schork, Andrew J.; Buil, Alfonso; Agerbo, Esben; Bybjerg-Grauholm, Jonas; Børglum, Anders D.; Daly, Mark J.; Mors, Ole; Hougaard, David M.; Mortensen, Preben B.; Werge, Thomas; Nordentoft, Merete; Thompson, Wesley K.; Benros, Michael E. 2019 2019-11-11 COMM-USE N PMC6848113 31712607.0 10.1038/s41398-019-0622-3 pp1t9ghm 0.379156 Li_C_2018, Doeschl-Wilson_2011, Nogales_2019, Castrignano_2015 Dettogni_2013, Torres_2010, Yang_2011, Liu_C_2016
226 Merdler-Rabinowicz_2019 Fetuin-A deficiency is associated with infantile cortical hyperostosis (Caffey disease) Merdler-Rabinowicz, Rona; Grinberg, Anna; Jacobson, Jeffrey M.; Somekh, Ido; Klein, Christoph; Lev, Atar; Ihsan, Salama; Habib, Adib; Somech, Raz; Simon, Amos J. 2019 2019-07-09 PMC N PMC7086575 31288248.0 10.1038/s41390-019-0499-0 ka9gnwyp 0.378522 Toh_Z_2016, Lee_S_2016, Wang_2007, Chen_2010, Mazumder_2015 Smith_2019, Lee_Y_2017, Di_Lullo_2019, Thieme_2019
227 Mo_J_2013 Identification of the polymorphisms in IFITM1 gene and their association in a Korean population with ulcerative colitis Mo, Ji-Su; Na, Kyung-Sook; Yu, Ji-In; Chae, Soo-Cheon 2013 2013-12-31 PMC N PMC7126213 24120510.0 10.1016/j.imlet.2013.09.026 ajstmtg9 0.377775 Wang_2007, Brake_2008, Meng_2008, Auewarakul_2005 Shen_2013, Yang_2011, Dettogni_2013, Hamano_2005
228 Gerdol_2015 Analysis of synonymous codon usage patterns in sixty-four different bivalve species Gerdol, Marco; De Moro, Gianluca; Venier, Paola; Pallavicini, Alberto 2015 2015-12-14 COMM-USE N PMC4690358 26713259.0 10.7717/peerj.1520 c6j4s5kb 0.377410 Gu_W_2004, Francis_2016, Zhang_2014, Baranov_2009, Chang_2011 Yi_Y_2012, Li_X_2016, Li_S_2014, Gu_W_2004
229 Otting_2009 Definition of Mafa-A and -B haplotypes in pedigreed cynomolgus macaques (Macaca fascicularis) Otting, Nel; Doxiadis, Gaby G. M.; Bontrop, Ronald E. 2009 2009-11-24 PMC N PMC2802488 19937015.0 10.1007/s00251-009-0412-9 dp8971im 0.376673 Lan_H_2019, Yuhki_1994, Chang_2011, Francis_2016 Huang_2019, O’Connor_2007, Ling_2010
230 Ai_H_2018 GenomeLandscaper: Landscape analysis of genome-fingerprints maps assessing chromosome architecture Ai, Hannan; Ai, Yuncan; Meng, Fanmei 2018 2018-01-18 COMM-USE N PMC5773709 29348569.0 10.1038/s41598-018-19366-2 dvfmpm54 0.376352 Chang_2011, Zheng_2008, Feng_2010, Whiteford_2005, Qi_Z_2018 Ai_Y_2013, Cheng_2013, Evans_2020, Pontius_2007
231 Cervera_2018 Viral Fitness Correlates with the Magnitude and Direction of the Perturbation Induced in the Host’s Transcriptome: The Tobacco Etch Potyvirus—Tobacco Case Study Cervera, Héctor; Ambrós, Silvia; Bernet, Guillermo P; Rodrigo, Guillermo; Elena, Santiago F 2018 2018-03-19 NONCOMM N PMC5995217 29562354.0 10.1093/molbev/msy038 9uqa39j9 0.376134 Trobaugh_2017, Haasnoot_2010, Berkhout_2006, Auewarakul_2005, Abernathy_2015 Cervera_2017, Tromas_2014
232 Castro-Prieto_2012 Immunogenetic Variation and Differential Pathogen Exposure in Free-Ranging Cheetahs across Namibian Farmlands Castro-Prieto, Aines; Wachter, Bettina; Melzheimer, Joerg; Thalwitzer, Susanne; Hofer, Heribert; Sommer, Simone 2012 2012-11-07 COMM-USE N PMC3492310 23145096.0 10.1371/journal.pone.0049129 xso5oi9s 0.374381 Yuhki_1994, Lan_H_2019, Radwan_2010, Gay_N_2014 Tibayrenc_2015, Plasil_2016, Marker_2007
233 Li_G_2017 Evolutionary and genetic analysis of the VP2 gene of canine parvovirus Li, Gairu; Ji, Senlin; Zhai, Xiaofeng; Zhang, Yuxiang; Liu, Jie; Zhu, Mengyan; Zhou, Jiyong; Su, Shuo 2017 2017-07-17 COMM-USE N PMC5512735 28716118.0 10.1186/s12864-017-3935-8 xewo2afg 0.373695 Gu_W_2004, Zhang_2014, Callison_1999, Liu_Y_2011, Chieochansin_2010 Lachheb_2019, Lin_C_2014, Ren_X_2008
234 Domingo_2008 CHAPTER 4 Viral Quasispecies: Dynamics, Interactions, and Pathogenesis * * Dedicated to Manfred Eigen on the occasion of his 80th birthday, for the insights that his pioneer studies have represented for virology. Domingo, Esteban; Escarmís, Cristina; Menéndez-Arias, Luis; Perales, Celia; Herrera, Mónica; Novella, Isabel S.; Holland, John J. 2008 2008-12-31 PMC N PMC7149507 10.1016/b978-0-12-374153-0.00004-7 n57lfj6u 0.372943 Rice_1992, Berkhout_2006, Trobaugh_2017, Wang_2018, den_Boon_2010 Domingo_1998
235 Kammerer_2007 Species-specific evolution of immune receptor tyrosine based activation motif-containing CEACAM1-related immune receptors in the dog Kammerer, Robert; Popp, Tanja; Härtle, Stefan; Singer, Bernhard B; Zimmermann, Wolfgang 2007 2007-10-18 COMM-USE N PMC2110893 17945019.0 10.1186/1471-2148-7-196 7gk8uzo0 0.372672 Haasnoot_2010, Volmer_2010, Trobaugh_2017, Herbert_2016, Berkhout_2006 Kammerer_2010, Voges_2010, Pavlopoulou_2014
236 Chan_2005 Homozygous L-SIGN (CLEC4M) plays a protective role in SARS coronavirus infection Chan, Vera S F; Chan, Kelvin Y K; Chen, Yongxiong; Poon, Leo L M; Cheung, Annie N Y; Zheng, Bojian; Chan, Kwok-Hung; Mak, William; Ngan, Hextan Y S; Xu, Xiaoning; Screaton, Gavin; Tam, Paul K H; Austyn, Jonathan M; Chan, Li-Chong; Yip, Shea-Ping; Peiris, Malik; Khoo, Ui-Soon; Lin, Chen-Lung S 2005 2005-12-20 PMC N PMC7097088 16369534.0 10.1038/ng1698 viikd4t2 0.371277 Ban_J_2018, Li_C_2013, Volmer_2010, Yasui_2016, Tallmadge_2008 Niemeyer_2018
237 Ren_L_2015 Genetic drift of human coronavirus OC43 spike gene during adaptive evolution Ren, Lili; Zhang, Yue; Li, Jianguo; Xiao, Yan; Zhang, Jing; Wang, Ying; Chen, Lan; Paranhos-Baccalà, Gláucia; Wang, Jianwei 2015 2015-06-22 COMM-USE N PMC4476415 26099036.0 10.1038/srep11451 zk44e4qy 0.369762 Volmer_2010, Callison_1999, Auewarakul_2005, Gu_W_2004, Chieochansin_2010 Lachheb_2019, Zhang_2015, Jeong_2005
238 Doyle_2010 THE IL-6 (−174, C/C) GENOTYPE PREDICTS GREATER RHINOVIRUS ILLNESS Doyle, William J.; Casselbrant, Margaretha L.; Li-Korotky, Ha-Sheng; Cullen Doyle, Allison P.; Lo, Chia-Yee; Turner, Ronald; Cohen, Sheldon 2010 2010-01-15 PMC N PMC2943745 20001857.0 10.1086/649559 8tovupdm 0.368748 Scagnolari_2012, Zhou_2006, Astudillo_2019, Kumar_2012, Tang_2007 Lee_F_2011, Alper_2008, Fan_R_2018, Wang_2014
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240 Faria_2009 Rooting human parechovirus evolution in time Faria, Nuno R; de Vries, Michel; van Hemert, Formijn J; Benschop, Kimberley; van der Hoek, Lia 2009 2009-07-15 COMM-USE N PMC2723090 19604368.0 10.1186/1471-2148-9-164 1xgjdhkx 0.367642 Gu_W_2004, Zheng_2008, Wang_2018, Zhang_2014, Chang_2011 Sun_D_2016, Asano_2016, Walker_2011
241 Benjafield_2004 No association of Angiotensin-Converting enzyme 2 gene (ACE2) polymorphisms with essential hypertension Benjafield, Adam V.; Wang, William Y.S.; Morris, Brian J. 2004 2004-07-31 PMC N PMC7110370 15233982.0 10.1016/j.amjhyper.2004.02.022 bpkktgmp 0.367477 Schomburg_2013, Schomburg_2013, Chen_2018, Park_2018 Zhong_2006, Szolnoki_2006, Patel_2014, Dettogni_2013
242 WILSON_2015 The population genetics of drug resistance evolution in natural populations of viral, bacterial and eukaryotic pathogens WILSON, BENJAMIN A.; GARUD, NANDITA R.; FEDER, ALISON F.; ASSAF, ZOE J.; PENNINGS, PLEUNI S. 2015 2015-12-17 None N PMC4943078 26578204.0 10.1111/mec.13474 rzsdaoe7 0.367370 Holmes_2007, Li_L_2014, Fauci_2006, Ferris_2016 Tibayrenc_2015, Lamotte_2017, Loré_2018
243 van_Hemert_2007 Different rates of (non-)synonymous mutations in astrovirus genes; correlation with gene function van Hemert, Formijn J; Lukashov, Vladimir V; Berkhout, Ben 2007 2007-03-07 COMM-USE N PMC1828050 17343744.0 10.1186/1743-422x-4-25 o76qvk49 0.367120 Gu_W_2004, Luytjes_1988, Morikawa_1992, Liu_Y_2010, Firth_2009 Ren_X_2008, Sheikh_2020
244 Tai_D_2017 A global perspective on hepatitis B‐related single nucleotide polymorphisms and evolution during human migration Tai, Dar‐In; Jeng, Wen‐Juei; Lin, Chun‐Yen 2017 2017-11-06 NONCOMM N PMC5721408 29404438.0 10.1002/hep4.1113 p604vvbi 0.366357 Wang_2014, Lim_T_2012, Salem_2017, Kim_D_2016, Vui_D_2014 Dettogni_2013, Zhao_2012, Shen_2013, Hamano_2005
245 Radwan_2010 Does reduced MHC diversity decrease viability of vertebrate populations? Radwan, Jacek; Biedrzycka, Aleksandra; Babik, Wiesław 2010 2010-03-31 PMC N PMC7092871 10.1016/j.biocon.2009.07.026 a97um9x5 0.366357 Holmes_2007, Lan_H_2019, Gervasi_2015, Simon-Loriere_2011 Manczinger_2019, Tibayrenc_2015, Plasil_2016
246 Gu_B_2019 Collaborative Cross Mouse Populations as a Resource for the Study of Epilepsy Bin Gu; John R. Shorter; Lucy H. Williams; Timothy A. Bell; Pablo Hock; Katherine A. Dalton; Yiyun Pan; Darla R. Miller; Ginger D. Shaw; Brian C. Cooley; Benjamin D. Philpot; Fernando Pardo-Manuel de Villena 2019 2019-07-15 BioRxiv N 10.1101/690917 ylh8ks30 0.365801 Castrignano_2015, Leiva-Torres_2017, Chang_2011, Ferris_2016 Evans_2020, Lorè_2020, Gralinski_2015
247 Schmidt-Küntzel_2018 Chapter 6 Conservation Genetics of the Cheetah: Genetic History and Implications for Conservation Schmidt-Küntzel, Anne; Dalton, Desiré L.; Menotti-Raymond, Marilyn; Fabiano, Ezequiel; Charruau, Pauline; Johnson, Warren E.; Sommer, Simone; Marker, Laurie; Kotzé, Antoinette; O’Brien, Stephen J. 2018 2018-12-31 PMC N PMC7149701 10.1016/b978-0-12-804088-1.00006-x o5wpcxdp 0.365033 McCoy_2003, Stenseth_2008, Holmes_2007, Gay_N_2014, UNKNOWN_2004 Marker_2007, Tibayrenc_2015, Harper_2013
248 Stoltzfus_2015 On the causes of evolutionary transition:transversion bias Arlin Stoltzfus; Ryan W. Norris 2015 2015-09-28 BioRxiv N 10.1101/027722 4xocqn6o 0.364594 Wu_G_2005, Chang_2011, Francis_2016, Gu_W_2004, Wu_G_2003 Stoltzfus_2015, Somovilla_2019, Garcia_2018, Parera_2006
249 Fish_2015 Contrasted patterns of variation and evolutionary convergence at the antiviral OAS1 gene in old world primates Fish, Ian; Boissinot, Stéphane 2015 2015-07-10 None N PMC4809017 26156123.0 10.1007/s00251-015-0855-0 g9oxcfnt 0.364464 Auewarakul_2005, Trobaugh_2017, Rice_1992, Haasnoot_2010 Niemeyer_2018, Green_2017, Hayward_2018
250 Smith_2019 Enabling large-scale genome editing by reducing DNA nicking Cory J. Smith; Oscar Castanon; Khaled Said; Verena Volf; Parastoo Khoshakhlagh; Amanda Hornick; Raphael Ferreira; Chun-Ting Wu; Marc Güell; Shilpa Garg; Hannu Myllykallio; George M. Church 2019 2019-03-15 BioRxiv N 10.1101/574020 p0xy6c95 0.363168 Price_2019, Auewarakul_2005, Karaman_2005, Rice_1992, Lamb_1991 Vashee_2017, Adams_2003
251 Pavlović-Lažetić_2016 SARS-CoV Genome Polymorphism: A Bioinformatics Study Pavlović-Lažetić, Gordana M.; Mitić, Nenad S.; Tomović, Andrija M.; Pavlović, Mirjana D.; Beljanski, Miloš V. 2016 2016-11-28 None N PMC5172477 16144519.0 10.1016/s1672-0229(05)03004-4 9ot6khmh 0.362440 Wu_G_2005, Liu_Y_2010, Callison_1999, Gu_W_2004, Luytjes_1988 Ren_X_2008, Lachheb_2019, Niemeyer_2018
252 Choby_2018 Molecular basis for the evolution of species-specific hemoglobin capture by pathogenic Staphylococcus Jacob E. Choby; Hanna B. Buechi; Allison J. Farrand; Eric P. Skaar; Matthew F. Barber 2018 2018-06-07 BioRxiv N 10.1101/339705 ieh5cvw1 0.362315 Wilson_2012, Berkhout_2006, Trobaugh_2017, Longdon_2018, Rivas_2016 Choby_2018, Michalska_2018, Berry_2005, Niemeyer_2018
253 Weng_2007 Persistent Infection and Promiscuous Recombination of Multiple Genotypes of an RNA Virus within a Single Host Generate Extensive Diversity Weng, Ziming; Barthelson, Roger; Gowda, Siddarame; Hilf, Mark E.; Dawson, William O.; Galbraith, David W.; Xiong, Zhongguo 2007 2007-09-19 None N PMC1975466 17878952.0 10.1371/journal.pone.0000917 p5ff5u4l 0.362007 Rice_1992, Grewelle_2020, Auewarakul_2005, Wang_2018 Usme-Ciro_2014
254 dos_Passos_Cunha_2018 Codon adaptation biases among sylvatic and urban genotypes of Dengue virus type 2 dos Passos Cunha, Marielton; Ortiz-Baez, Ayda Susana; de Melo Freire, Caio César; de Andrade Zanotto, Paolo Marinho 2018 2018-10-31 None N PMC7106335 29792991.0 10.1016/j.meegid.2018.05.017 kllrqoxi 0.361509 Liu_S_2013, Roberton_2006, Webster_2006, Butt_2014 Butt_2016, Berto_2018, El-Kafrawy_2019
255 Voronin_2009 Genetic Drift of HIV Populations in Culture Voronin, Yegor; Holte, Sarah; Overbaugh, Julie; Emerman, Michael 2009 2009-03-20 COMM-USE N PMC2652835 19300501.0 10.1371/journal.pgen.1000431 z0y2og29 0.361225 Mandary_2019, Holmes_2007, Grewelle_2020, Simon-Loriere_2009 Ngandu_2009, Warren_2019
256 Ruskamp_2008 Polymorphisms in the Mannan-Binding Lectin Gene Are Not Associated with Questionnaire-Reported Respiratory Tract Infections in Children Ruskamp, Jopje M.; Hoekstra, Maarten O.; Postma, Dirkje S.; Kerkhof, Marjan; Bottema, Renske W.; Koppelman, Gerard H.; Rovers, Maroeska M.; Wijga, Alet H.; de Jongste, Johan C.; Brunekreef, Bert; Sanders, Elisabeth A. 2008 2008-12-01 PMC N PMC7109965 18847375.0 10.1086/592989 e0homivr 0.360836 Scagnolari_2012, Reyes-Velázquez_2015, Ferdinands_2011, Astudillo_2019 Liu_C_2016, Amiri_2017, Ou_X_2011, Antony_2013
257 Glinsky_2019 Impacts of genomic networks governed by human-specific regulatory sequences and genetic loci harboring fixed human-specific neuro-regulatory single nucleotide mutations on phenotypic traits of Modern Humans Gennadi V. Glinsky 2019 2019-11-20 BioRxiv N 10.1101/848762 r03f3874 0.360624 Wang_2007, Haasnoot_2010, Francis_2016, Atianand_2014, Trobaugh_2017
258 Smith_2012 Implications of altered replication fidelity on the evolution and pathogenesis of coronaviruses Smith, Everett C; Denison, Mark R 2012 2012-10-31 PMC N PMC7102773 22857992.0 10.1016/j.coviro.2012.07.005 ac38yvcn 0.360572 Rice_1992, den_Boon_2010, Stork_2011, Trobaugh_2017 Eckerle_2010, Kautz_2018
259 Maestri_2015 Siaα2-3Galβ1- Receptor Genetic Variants Are Associated with Influenza A(H1N1)pdm09 Severity Maestri, Alvino; Sortica, Vinicius Albuquerque; Tovo-Rodrigues, Luciana; Santos, Mirleide Cordeiro; Barbagelata, Luana; Moraes, Milene Raiol; Alencar de Mello, Wyller; Gusmão, Leonor; Sousa, Rita Catarina Medeiros; Emanuel Batista dos Santos, Sidney 2015 2015-10-05 COMM-USE N PMC4593567 26436774.0 10.1371/journal.pone.0139681 a6flr4mq 0.360245 Volmer_2010, Zhang_2014, Yasui_2016, Auewarakul_2005, Chieochansin_2010 Zhu_X_2011, Hamano_2005
260 Tulio_2011 MASP2 gene polymorphism is associated with susceptibility to hepatitis C virus infection Tulio, Siumara; Faucz, Fabio R.; Werneck, Renata I.; Olandoski, Márcia; Alexandre, Rodrigo B.; Boldt, Angélica B.W.; Pedroso, Maria Lucia; de Messias-Reason, Iara J. 2011 2011-10-31 PMC N PMC7115369 21843573.0 10.1016/j.humimm.2011.06.016 ucbfbqa3 0.360025 Callison_1999, Wang_2010, Yang_2010, Luytjes_1988 Torres_2010, Liu_C_2016, Shen_2013, Amiri_2017
261 Häfliger_2019 APOB‐associated cholesterol deficiency in Holstein cattle is not a simple recessive disease Häfliger, Irene Monika; Hofstetter, Sonja; Mock, Thomas; Stettler, Manuela Hanna; Meylan, Mireille; Mehinagic, Kemal; Stokar‐Regenscheit, Nadine; Drögemüller, Cord 2019 2019-06-18 PMC N PMC7159454 31215050.0 10.1111/age.12801 cvte32fx 0.358345 Zhang_2017, Lan_H_2019, Wu_G_2005, Aylor_2011
262 Lipkin_2016 The Use of Kosher Phenotyping for Mapping QTL Affecting Susceptibility to Bovine Respiratory Disease Lipkin, Ehud; Strillacci, Maria Giuseppina; Eitam, Harel; Yishay, Moran; Schiavini, Fausta; Soller, Morris; Bagnato, Alessandro; Shabtay, Ariel 2016 2016-04-14 COMM-USE N PMC4831767 27077383.0 10.1371/journal.pone.0153423 rjva6x98 0.358071 Chang_2011, Yu_H_2007, Phillippy_2009, Harel_2019, Chen_2019 Lorè_2020, Wu_H_2004, Neibergs_2014, Ren_X_2008
263 Ngandu_2009 Evidence of HIV-1 adaptation to host HLA alleles following chimp-to-human transmission Ngandu, Nobubelo K; Seoighe, Cathal; Scheffler, Konrad 2009 2009-10-10 COMM-USE N PMC2765438 19818146.0 10.1186/1743-422x-6-164 h8c38kb5 0.357994 Rice_1992, Berkhout_2006, Trobaugh_2017, Volmer_2010, Naito_2007 Wang_2012, Zhang_2006, Delhalle_2012, Sun_L_2014
264 Antony_2013 Mannose-Binding Lectin and Susceptibility to Schistosomiasis Antony, Justin S.; Ojurongbe, Olusola; van Tong, Hoang; Ouf, Eman Abou; Engleitner, Thomas; Akindele, Akeem A.; Sina-Agbaje, Olawumi R.; Adeyeba, Adegboyega O.; Kremsner, Peter G.; Velavan, Thirumalaisamy P. 2013 2013-06-01 PMC N PMC7107301 23448728.0 10.1093/infdis/jit081 sg2m3bcm 0.357976 Wang_2010, Wu_S_2018, Leung_2007, Hamano_2005 Xue_G_2013, Barfod_2007, Liu_C_2016, Amiri_2017
265 Nevot_2018 HIV-1 Protease Evolvability is Affected by Synonymous Nucleotide Recoding Maria Nevot; Ana Jordan-Paiz; Glòria Martrus; Cristina Andrés; Damir García-Cehic; Josep Gregori; Sandra Franco; Josep Quer; Miguel Angel Martinez 2018 2018-05-07 BioRxiv N 10.1101/315366 32b5xysw 0.357555 Tallmadge_2008, Auewarakul_2005, Rice_1992, Volmer_2010, Naito_2007 Ding_2014
266 Faye_2018 Full-Genome Characterization and Genetic Evolution of West African Isolates of Bagaza Virus Faye, Martin; Faye, Oumar; Diagne, Moussa Moise; Fall, Gamou; Weidmann, Manfred; Sembene, Mbacke; Sall, Amadou Alpha; Faye, Ousmane 2018 2018-04-13 COMM-USE N PMC5923487 29652824.0 10.3390/v10040193 1zjrunzc 0.356920 Lu_P_2016, Wang_2014, Karlsson_2012, Wang_2018, Weaver_2004 Lachheb_2019, Ren_X_2008
267 Graepel_2017 Proofreading-deficient coronaviruses adapt over long-term passage for increased fidelity and fitness without reversion of exoribonuclease-inactivating mutations Kevin W. Graepel; Xiaotao Lu; James Brett Case; Nicole R. Sexton; Everett Clinton Smith; Mark R. Denison 2017 2017-08-11 BioRxiv N 10.1101/175562 vqtx98xm 0.356732 Stork_2011, Yasuda-Inoue_2013, Meyerson_2017, Rice_1992, den_Boon_2010 Graepel_2017, Smith_2015
268 Leckband_2011 Geometry and Adhesion of Extracellular Domains of DC-SIGNR Neck Length Variants Analyzed by Force–Distance Measurements Leckband, Deborah E.; Menon, Sindhu; Rosenberg, Kenneth; Graham, Sarah A.; Taylor, Maureen E.; Drickamer, Kurt 2011 2011-06-08 PMC N PMC3140775 21650186.0 10.1021/bi2003444 cjzecgrb 0.356179 Ivarsson_2012, UNKNOWN_1987, Yu_Q_2009, Snyder_2005 Yu_Q_2009, Snyder_2005, dos_Santos_2016
269 Itoyama_2004 ACE1 polymorphism and progression of SARS Itoyama, Satoru; Keicho, Naoto; Quy, Tran; Phi, Nguyen Chi; Long, Hoang Thuy; Ha, Le Dang; Ban, Vo Van; Ohashi, Jun; Hijikata, Minako; Matsushita, Ikumi; Kawana, Akihiko; Yanai, Hideki; Kirikae, Teruo; Kuratsuji, Tadatoshi; Sasazuki, Takehiko 2004 2004-10-22 PMC N PMC7092806 15381116.0 10.1016/j.bbrc.2004.08.208 j4600733 0.356029 Scagnolari_2012, Nogales_2019, Zhang_2013, Gu_W_2004 Wang_2008, He_J_2006, Hamano_2005, Chan_2005
270 Caron_2019 Chloroplast DNA variation in a hyperdiverse tropical tree community Caron, Henri; Molino, Jean‐François; Sabatier, Daniel; Léger, Patrick; Chaumeil, Philippe; Scotti‐Saintagne, Caroline; Frigério, Jean‐Marc; Scotti, Ivan; Franc, Alain; Petit, Rémy J. 2019 2019-03-26 COMM-USE N PMC6476754 31031952.0 10.1002/ece3.5096 6v3ojnl8 0.354932 Francis_2016, Li_D_2019, Zheng_2008, McCoy_2003
271 Chaw_2020 The origin and underlying driving forces of the SARS-CoV-2 outbreak Shu-Miaw Chaw; Jui-Hung Tai; Shi-Lun Chen; Chia-Hung Hsieh; Sui-Yuan Chang; Shiou-Hwei Yeh; Wei-Shiung Yang; Pei-Jer Chen; Hurng-Yi Wang 2020 2020-04-14 BioRxiv Y 10.1101/2020.04.12.038554 bawgldfi 0.354699 Francis_2016, Volmer_2010, Chang_2011, Zhang_2014, Auewarakul_2005 Boni_2020, Rockx_2020, Niemeyer_2018, Patino-Galindo_2020
272 Yin_J_2012 Association of genetic variants in the IRAK-4 gene with susceptibility to severe sepsis Yin, Jun; Yao, Chen-ling; Liu, Cheng-long; Song, Zhen-ju; Tong, Chao-yang; Huang, Pei-zhi 2012 2012-01-01 PMC N PMC4129800 25215050.0 10.5847/wjem.j.issn.1920-8642.2012.02.008 viks17xx 0.354388 Scagnolari_2012, Astudillo_2019, Leung_2007, Wu_S_2018 Wang_2008, Torres_2010, Allam_2015
273 Rozen-Gagnon_2014 Alphavirus Mutator Variants Present Host-Specific Defects and Attenuation in Mammalian and Insect Models Rozen-Gagnon, Kathryn; Stapleford, Kenneth A.; Mongelli, Vanesa; Blanc, Hervé; Failloux, Anna-Bella; Saleh, Maria-Carla; Vignuzzi, Marco 2014 2014-01-16 COMM-USE N PMC3894214 24453971.0 10.1371/journal.ppat.1003877 pa0p5dif 0.353826 Rice_1992, Berkhout_2006, den_Boon_2010, Trobaugh_2017, Volmer_2010 Case_2017
274 Rugwizangoga_2019 IFNL4 Genotypes Predict Clearance of RNA Viruses in Rwandan Children With Upper Respiratory Tract Infections Rugwizangoga, Belson; Andersson, Maria E.; Kabayiza, Jean-Claude; Nilsson, Malin S.; Ármannsdóttir, Brynja; Aurelius, Johan; Nilsson, Staffan; Hellstrand, Kristoffer; Lindh, Magnus; Martner, Anna 2019 2019-10-04 COMM-USE N PMC6787560 31637221.0 10.3389/fcimb.2019.00340 cu56p0hw 0.353814 Scagnolari_2012, Chieochansin_2010, Auewarakul_2005, Karlsson_2012, Li_W_2012 Agoti_2019, Espinosa_2017, Gamiño‐Arroyo_2016
275 Astudillo_2019 Correlation between female sex, IL28B genotype, and the clinical severity of bronchiolitis in pediatric patients Astudillo, Patricio; Angulo, Jenniffer; Pino, Karla; de Carvalho, Joseane Biso; de Morais, Guilherme Loss; Perez, Sebastián; de Vasconcelos, Ana Tereza Ribeiro; Ferrés, Marcela; López-Lastra, Marcelo 2019 2019-10-23 PMC N PMC7086532 31645053.0 10.1038/s41390-019-0623-1 56x5q7f6 0.353814 Scagnolari_2012, Tang_2014, Li_F_2018, Ferdinands_2011 Yang_2011, Kuo_H_2014
276 Ezzikouri_2014 The allele 4 of neck region liver-lymph node-specific ICAM-3-grabbing integrin variant is associated with spontaneous clearance of hepatitis C virus and decrease of viral loads Ezzikouri, S.; Rebbani, K.; Fakhir, F.-Z.; Alaoui, R.; Nadir, S.; Diepolder, H.; Thursz, M.; Khakoo, S.I.; Benjelloun, S. 2014 2014-05-31 PMC N PMC7129123 24283933.0 10.1111/1469-0691.12403 d2llmjhr 0.353547 Sun_H_2018, Baillie_2020, Chen_2018, Benjafield_2004, Choi_2017 Barreiro_2007, Rathore_2007, Jiang_2017
277 Ling_2012 Comprehensive identification of high-frequency and co-occurring Mafa-B, Mafa-DQB1, and Mafa-DRB alleles in cynomolgus macaques of Vietnamese origin Ling, Fei; Zhuo, Min; Ni, Chao; Zhang, Gui-qing; Wang, Tao; Li, Wai; Wei, Li-qiong; Du, Hong-li; Wang, Ju-fang; Wang, Xiao-ning 2012 2012-05-31 PMC N PMC7115533 22365968.0 10.1016/j.humimm.2012.02.003 kc3d0ssv 0.353218 Karl_2013, Yuhki_1994, Lan_H_2019, Francis_2016, O’Connor_2007 Ling_2010, Huang_2019, Yang_2011, Zhu_X_2011
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279 Sabath_2012 Evolution of Viral Proteins Originated De Novo by Overprinting Sabath, Niv; Wagner, Andreas; Karlin, David 2012 2012-07-19 None N PMC3494269 22821011.0 10.1093/molbev/mss179 629fwmgk 0.352411 Lamb_1991, Wang_2007, Francis_2016, Auewarakul_2005 Tzeng_2006, Goldberg_1991, Shukla_2014
280 Burger_2004 Analysis of the mitochondrial genome of cheetahs (Acinonyx jubatus) with neurodegenerative disease Burger, Pamela A; Steinborn, Ralf; Walzer, Christian; Petit, Thierry; Mueller, Mathias; Schwarzenberger, Franz 2004 2004-08-18 PMC N PMC7126587 15302412.0 10.1016/j.gene.2004.05.020 4jf16fzg 0.351124 Luytjes_1988, Wu_G_2005, Liu_Y_2010, Gu_W_2004, Firth_2009 Zhou_2017, Hammerschmitt_2020, Bank-Wolf_2014, Ren_X_2008
281 Marker_2007 Molecular Genetic Insights on Cheetah (Acinonyx jubatus) Ecology and Conservation in Namibia Marker, Laurie L.; Wilkerson, Alison J. Pearks; Sarno, Ronald J.; Martenson, Janice; Breitenmoser-Würsten, Christian; O'Brien, Stephen J.; Johnson, Warren E. 2007 2007-11-02 PMC N PMC7109834 17982159.0 10.1093/jhered/esm081 xe0xey1n 0.350301 Zheng_2008, Lan_H_2019, Liu_S_2013, Gay_N_2014 Harper_2013, Wray_2016, Tibayrenc_2015
282 Nachshon_2016 Dissecting the Effect of Genetic Variation on the Hepatic Expression of Drug Disposition Genes across the Collaborative Cross Mouse Strains Nachshon, Aharon; Abu-Toamih Atamni, Hanifa J.; Steuerman, Yael; Sheikh-Hamed, Roa'a; Dorman, Alexandra; Mott, Richard; Dohm, Juliane C.; Lehrach, Hans; Sultan, Marc; Shamir, Ron; Sauer, Sascha; Himmelbauer, Heinz; Iraqi, Fuad A.; Gat-Viks, Irit 2016 2016-10-05 COMM-USE N PMC5050206 27761138.0 10.3389/fgene.2016.00172 6nok20vb 0.349945 Chang_2011, Francis_2016, Gamermann_2014, Leiva-Torres_2017, Aylor_2011 Gralinski_2015, Lorè_2020, Evans_2020
283 Xu_Y_2010 Sequencing of DC-SIGN promoter indicates an association between promoter variation and risk of nasopharyngeal carcinoma in cantonese Xu, Ya-Fei; Liu, Wan-Li; Dong, Ju-Qin; Liu, Wen-Sheng; Feng, Qi-Sheng; Chen, Li-Zhen; Zeng, Yi-Xin; Zeng, Mu-Sheng; Jia, Wei-Hua 2010 2010-11-11 COMM-USE N PMC2989958 21067616.0 10.1186/1471-2350-11-161 wsqwgx9u 0.349255 Chen_2018, Leung_2007, Tang_2014, Benjafield_2004 Zheng_2011, Chan_2010, Amiri_2017, Barreiro_2006
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285 IJspeert_2014 Similar recombination-activating gene (RAG) mutations result in similar immunobiological effects but in different clinical phenotypes IJspeert, Hanna; Driessen, Gertjan J.; Moorhouse, Michael J.; Hartwig, Nico G.; Wolska-Kusnierz, Beata; Kalwak, Krzysztof; Pituch-Noworolska, Anna; Kondratenko, Irina; van Montfrans, Joris M.; Mejstrikova, Ester; Lankester, Arjan C.; Langerak, Anton W.; van Gent, Dik C.; Stubbs, Andrew P.; van Dongen, Jacques J.M.; van der Burg, Mirjam 2014 2014-04-30 PMC N PMC7112318 24418478.0 10.1016/j.jaci.2013.11.028 4l574k3q 0.348961 Kolls_2012, Hansen_2018, Hwang_2015, Koch_2012, Kim_T_2005 Linenberger_1995, UNKNOWN_1986
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288 Glymph_2013 The Myxovirus Resistance A (MxA) Gene −88G>T Single Nucleotide Polymorphism Is Associated with Prostate Cancer Glymph, Shanora; Mandal, Sanjay; Knowell, Ashley Evans; Abebe, Fisseha; Chaudhary, Jaideep 2013 2013-06-01 PMC N PMC3669225 23438650.0 10.1016/j.meegid.2013.02.010 7ras66nz 0.348009 Haasnoot_2010, Yu_P_2015, Trobaugh_2017, Lee_S_2016, Ban_J_2018 Hamano_2005, Torres_2010, Zhang_2013, Zhou_2012
289 Dobrynin_2015 Genomic legacy of the African cheetah, Acinonyx jubatus Dobrynin, Pavel; Liu, Shiping; Tamazian, Gaik; Xiong, Zijun; Yurchenko, Andrey A.; Krasheninnikova, Ksenia; Kliver, Sergey; Schmidt-Küntzel, Anne; Koepfli, Klaus-Peter; Johnson, Warren; Kuderna, Lukas F.K.; García-Pérez, Raquel; Manuel, Marc de; Godinez, Ricardo; Komissarov, Aleksey; Makunin, Alexey; Brukhin, Vladimir; Qiu, Weilin; Zhou, Long; Li, Fang; Yi, Jian; Driscoll, Carlos; Antunes, Agostinho; Oleksyk, Taras K.; Eizirik, Eduardo; Perelman, Polina; Roelke, Melody; Wildt, David; Diekhans, Mark; Marques-Bonet, Tomas; Marker, Laurie; Bhak, Jong; Wang, Jun; Zhang, Guojie; O’Brien, Stephen J. 2015 2015-12-10 None N PMC4676127 26653294.0 10.1186/s13059-015-0837-4 qvm30tct 0.347818 Xu_L_2018, Chieochansin_2010, Yuhki_1994, Lim_T_2012, Tong_2009 Marker_2007, Burger_2004, Tibayrenc_2015
290 Zhu_B_2010 Distributions of HLA-A and -B alleles and haplotypes in the Yi ethnic minority of Yunnan, China: relationship to other populations Zhu, Bo-feng; Yang, Guang; Shen, Chun-mei; Qin, Hai-xia; Liu, Shun-zhi; Deng, Ya-jun; Fan, Shuan-liang; Deng, Li-bin; Chen, Feng; Zhang, Ping; Fang, Jie; Chen, Li-ping; Wang, Hong-dan; Wang, Zhen-yuan; Lucas, Rudolf 2010 2010-02-01 PMC N PMC2816316 20104647.0 10.1631/jzus.b0900232 rqirwjmn 0.346679 Lim_T_2012, HAN_B_2008, Vlasova_2014, Zhao_2017 Wang_2012, Liu_C_2016, Dettogni_2013, Amiri_2017
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292 Zhang_2006 Probing genomic diversity and evolution of Escherichia coli O157 by single nucleotide polymorphisms Zhang, Wei; Qi, Weihong; Albert, Thomas J.; Motiwala, Alifiya S.; Alland, David; Hyytia-Trees, Eija K.; Ribot, Efrain M.; Fields, Patricia I.; Whittam, Thomas S.; Swaminathan, Bala 2006 2006-06-01 None N PMC1473186 16606700.0 10.1101/gr.4759706 v4odd4pm 0.343804 Squire_2013, El-Seedy_2016, Ji_X_2011, Chieochansin_2010 Ren_X_2008
293 Toncheva_2014 NGS Nominated CELA1, HSPG2, and KCNK5 as Candidate Genes for Predisposition to Balkan Endemic Nephropathy Toncheva, D.; Mihailova-Hristova, M.; Vazharova, R.; Staneva, R.; Karachanak, S.; Dimitrov, P.; Simeonov, V.; Ivanov, S.; Balabanski, L.; Serbezov, D.; Malinov, M.; Stefanovic, V.; Čukuranović, R.; Polenakovic, M.; Jankovic-Velickovic, L.; Djordjevic, V.; Jevtovic-Stoimenov, T.; Plaseska-Karanfilska, D.; Galabov, A.; Djonov, V.; Dimova, I. 2014 2014-05-15 COMM-USE N PMC4052113 24949484.0 10.1155/2014/920723 f72hl6du 0.343370 Xu_J_2016, Francis_2016, Wang_2007, Haasnoot_2010, Nogales_2019 Hwang_2018, Yang_2011, Torres_2010, Di_Lullo_2019
294 Lipman_2004 Genetic Loci That Influence Cause of Death in a Heterogeneous Mouse Stock Lipman, Ruth; Galecki, Andrzej; Burke, David T.; Miller, Richard A. 2004 2004-10-23 PMC N PMC7110326 15528770.0 10.1093/gerona/59.10.b977 dgf3qmdu 0.341116 Francis_2016, Jackson_2003, Goradia_1988, Callison_1999 Lorè_2020, Evans_2020
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296 Cho_K_2018 Heterozygous Mutations in OAS1 Cause Infantile-Onset Pulmonary Alveolar Proteinosis with Hypogammaglobulinemia Cho, Kazutoshi; Yamada, Masafumi; Agematsu, Kazunaga; Kanegane, Hirokazu; Miyake, Noriko; Ueki, Masahiro; Akimoto, Takuma; Kobayashi, Norimoto; Ikemoto, Satoru; Tanino, Mishie; Fujita, Atsushi; Hayasaka, Itaru; Miyamoto, Satoshi; Tanaka-Kubota, Mari; Nakata, Koh; Shiina, Masaaki; Ogata, Kazuhiro; Minakami, Hisanori; Matsumoto, Naomichi; Ariga, Tadashi 2018 2018-03-01 None N PMC5985284 29455859.0 10.1016/j.ajhg.2018.01.019 b592ihwk 0.340419 Wang_2007, Toh_Z_2016, Zmora_2015, Lee_S_2016 Merdler-Rabinowicz_2019, Jung_2015, Lee_Y_2017
297 Gralinski_2017 Allelic Variation in the Toll-Like Receptor Adaptor Protein Ticam2 Contributes to SARS-Coronavirus Pathogenesis in Mice Gralinski, Lisa E.; Menachery, Vineet D.; Morgan, Andrew P.; Totura, Allison L.; Beall, Anne; Kocher, Jacob; Plante, Jessica; Harrison-Shostak, D. Corinne; Schäfer, Alexandra; Pardo-Manuel de Villena, Fernando; Ferris, Martin T.; Baric, Ralph S. 2017 2017-06-05 COMM-USE N PMC5473747 28592648.0 10.1534/g3.117.041434 cf453xqa 0.340010 Trobaugh_2017, Haasnoot_2010, Berkhout_2006, Auewarakul_2005, Si_F_2020 Plante_2020, McDermott_2016, Niemeyer_2018
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300 de_Vries_2017 Complement receptor 1 gene polymorphisms are associated with cardiovascular risk de Vries, Marijke A.; Trompet, Stella; Mooijaart, Simon P.; Smit, Roelof A.J.; Böhringer, Stefan; Castro Cabezas, Manuel; Jukema, J. Wouter 2017 2017-02-28 PMC N PMC7094315 28033544.0 10.1016/j.atherosclerosis.2016.12.017 7fjlg96m 0.337677 Scagnolari_2012, Zhang_2014, Francis_2016, Wang_2007, Nogales_2019 Yang_2011, Liu_C_2016, Mo_J_2013
301 Ezzeldin_2012 Association of TNF-α –308G/A, SP-B 1580 C/T, IL-13 –1055 C/T gene polymorphisms and latent adenoviral infection with chronic obstructive pulmonary disease in an Egyptian population Ezzeldin, Nada; Shalaby, Alaa; Saad-Hussein, Amal; Ezzeldin, Howayda; El Lebedy, Dalia; Farouk, Hebatallah; Kandil, Dina M. 2012 2012-05-09 NONCOMM N PMC3361041 22662002.0 10.5114/aoms.2012.28556 a0bqliei 0.337677 Wang_2010, Scagnolari_2012, Leung_2007, Astudillo_2019 Wang_2008, Torres_2010, Doyle_2010, Cao_J_2012
302 Jaiswal_2018 Genome Sequence of Peacock Reveals the Peculiar Case of a Glittering Bird Jaiswal, Shubham K.; Gupta, Ankit; Saxena, Rituja; Prasoodanan, Vishnu P. K.; Sharma, Ashok K.; Mittal, Parul; Roy, Ankita; Shafer, Aaron B. A.; Vijay, Nagarjun; Sharma, Vineet K. 2018 2018-09-19 COMM-USE N PMC6156156 30283495.0 10.3389/fgene.2018.00392 6x00621j 0.336935 Berkhout_2006, Lester_2014, Cullen_2009, Haasnoot_2010, Shi_J_2012 Harper_2013, Walker_2011
303 Lara_2014 Genetic host specificity of hepatitis E virus Lara, James; Purdy, Michael A.; Khudyakov, Yury E. 2014 2014-06-30 None N PMC5745802 24667049.0 10.1016/j.meegid.2014.03.011 is4yyblp 0.336739 Rice_1992, Grewelle_2020, Auewarakul_2005, Wang_2018, Volmer_2010 Nan_Y_2016, Berto_2018, Lachheb_2019, Dups_2012
304 Kozaki_2007 Comparison of two acetylcholinesterase gene cDNAs of the lesser mealworm, Alphitobius diaperinus, in insecticide susceptible and resistant strains Kozaki, Toshinori; Kimmelblatt, Brian A.; Hamm, Ronda L.; Scott, Jeffrey G. 2007 2007-12-28 PMC N PMC7159712 18163527.0 10.1002/arch.20229 yck1t3pp 0.336330 Callison_1999, Krause_1987, Wang_2007, Li_D_2019, Lee_C_2001
305 Olofsson_2002 Genetic links between the acute‐phase response and arthritis development in rats Olofsson, Peter; Nordquist, Niklas; Vingsbo‐Lundberg, Carina; Larsson, Anders; Falkenberg, Cecilia; Pettersson, Ulf; Åkerström, Bo; Holmdahl, Rikard 2002 2002-01-18 PMC N PMC7159512 11817600.0 10.1002/1529-0131(200201)46:1<259::aid-art10035>3.0.co;2-2 9rmqselr 0.335660 Lee_S_2016, Haasnoot_2010, Trobaugh_2017, Berkhout_2006, Cann_2016
306 Peng_2012 The CEA/CD3-Bispecific Antibody MEDI-565 (MT111) Binds a Nonlinear Epitope in the Full-Length but Not a Short Splice Variant of CEA Peng, Li; Oberst, Michael D.; Huang, Jiaqi; Brohawn, Philip; Morehouse, Chris; Lekstrom, Kristen; Baeuerle, Patrick A.; Wu, Herren; Yao, Yihong; Coats, Steven R.; Dall’Acqua, William; Damschroder, Melissa; Hammond, Scott A. 2012 2012-05-04 COMM-USE N PMC3344869 22574157.0 10.1371/journal.pone.0036412 vvspjage 0.335264 Volmer_2010, UNKNOWN_1987, Wang_2007, Krause_1987, Callison_1999 Sarkar_2013
307 Bayer_2018 Adaptation by copy number variation in monopartite viruses Bayer, Avraham; Brennan, Greg; Geballe, Adam P 2018 2018-12-31 PMC N PMC6289852 30015083.0 10.1016/j.coviro.2018.07.001 20rm4o7c 0.333840 Rice_1992, Wang_2018, Auewarakul_2005, Trobaugh_2017 Satyanarayana_2003
308 Hilton_2017 The Intergenic Recombinant HLA-B∗46:01 Has a Distinctive Peptidome that Includes KIR2DL3 Ligands Hilton, Hugo G.; McMurtrey, Curtis P.; Han, Alex S.; Djaoud, Zakia; Guethlein, Lisbeth A.; Blokhuis, Jeroen H.; Pugh, Jason L.; Goyos, Ana; Horowitz, Amir; Buchli, Rico; Jackson, Ken W.; Bardet, Wilfred; Bushnell, David A.; Robinson, Philip J.; Mendoza, Juan L.; Birnbaum, Michael E.; Nielsen, Morten; Garcia, K. Christopher; Hildebrand, William H.; Parham, Peter 2017 2017-05-16 None N PMC5510751 28514659.0 10.1016/j.celrep.2017.04.059 v805u6zu 0.333822 Callison_1999, Volmer_2010, UNKNOWN_1987, Francis_2016, Yuhki_1994 Wang_2012, Jiang_2017, Sun_L_2014
309 Mboowa_2018 Human Genomic Loci Important in Common Infectious Diseases: Role of High-Throughput Sequencing and Genome-Wide Association Studies Mboowa, Gerald; Sserwadda, Ivan; Amujal, Marion; Namatovu, Norah 2018 2018-03-20 COMM-USE N PMC5884297 29755620.0 10.1155/2018/1875217 ctvnmjsl 0.333637 Gupta_2009, Brucker_2020, Li_L_2014, Leiva-Torres_2017, Castrignano_2015 Gralinski_2015, Anderson_2020, Fumagalli_2010
310 Graepel_2017 Proofreading-Deficient Coronaviruses Adapt for Increased Fitness over Long-Term Passage without Reversion of Exoribonuclease-Inactivating Mutations Graepel, Kevin W.; Lu, Xiaotao; Case, James Brett; Sexton, Nicole R.; Smith, Everett Clinton; Denison, Mark R. 2017 2017-11-07 COMM-USE N PMC5676041 29114026.0 10.1128/mbio.01503-17 qeltdch7 0.333592 Stork_2011, Meyerson_2017, Yasuda-Inoue_2013, Kang_2009, Rice_1992 Graepel_2017, Case_2017
311 Matos_2007 IFNG +874T/A polymorphism is not associated with American tegumentary leishmaniasis susceptibility but can influence Leishmania induced IFN-γ production Matos, Guilherme Inocêncio; Covas, Claudia de J Fernandes; Bittar, Rita de Cássia; Gomes-Silva, Adriano; Marques, Fabiana; Maniero, Viviane C; Amato, Valdir S; Oliveira-Neto, Manoel P; Mattos, Marise da Silva; Pirmez, Claude; Sampaio, Elizabeth P; Moraes, Milton O; Da-Cruz, Alda Maria 2007 2007-04-24 COMM-USE N PMC1878480 17456233.0 10.1186/1471-2334-7-33 ivscb6yx 0.333573 Aranda-Anzaldo_1991, Kolls_2012, Lee_S_2016, Zhao_2012, Kumar_2012 Torres_2010, Go_Y_2014
312 Kammerer_2017 Recent expansion and adaptive evolution of the carcinoembryonic antigen family in bats of the Yangochiroptera subgroup Kammerer, Robert; Mansfeld, Martin; Hänske, Jana; Mißbach, Sophie; He, Xiaocui; Köllner, Bernd; Mouchantat, Susan; Zimmermann, Wolfgang 2017 2017-09-11 COMM-USE N PMC5594555 28893191.0 10.1186/s12864-017-4106-7 xog2y6wk 0.333523 Dolja_2006, Odom_2009, Volmer_2010, Hänske_2020, Haasnoot_2010 Kammerer_2010, Pavlopoulou_2014, Kammerer_2007, Hayward_2018
313 Noguchi_2013 Differential effects of a common splice site polymorphism on the generation of OAS1 variants in human bronchial epithelial cells Noguchi, Satoshi; Hamano, Emi; Matsushita, Ikumi; Hijikata, Minako; Ito, Hideyuki; Nagase, Takahide; Keicho, Naoto 2013 2013-03-31 None N PMC7115495 23220500.0 10.1016/j.humimm.2012.11.011 egyxa7hv 0.331134 Wang_2007, Volmer_2010, Brake_2008, Krause_1987 Hamano_2005, Rimstad_1995, Wu_S_2018, Levy_2000
314 Franklin_2015 Serum Amyloid A Protein Concentration in Blood is Influenced by Genetic Differences in the Cheetah (Acinonyx jubatus) Franklin, Ashley D; Schmidt-Küntzel, Anne; Terio, Karen A; Marker, Laurie L; Crosier, Adrienne E 2015 2015-11-19 PMC N PMC5994965 26585380.0 10.1093/jhered/esv089 xag1cfw5 0.331084 Zhang_2014, Gu_W_2004, Volmer_2010, Callison_1999, Wang_2007 Zhu_X_2011, Merdler-Rabinowicz_2019, Torres_2010, Yang_2011
315 Mehrbod_2017 Association of IFITM3 rs12252 polymorphisms, BMI, diabetes, and hypercholesterolemia with mild flu in an Iranian population Mehrbod, Parvaneh; Eybpoosh, Sana; Fotouhi, Fatemeh; Shokouhi Targhi, Hadiseh; Mazaheri, Vahideh; Farahmand, Behrokh 2017 2017-11-09 COMM-USE N PMC5680824 29121968.0 10.1186/s12985-017-0884-4 7ygcfzii 0.330954 Choudhury_2011, Abou-Hamdan_2018, Largo_2016, David_2013, Chen_2018 Yang_2011, Torres_2010, Amiri_2017, Mo_J_2013
316 Ford_2014 Frequency and Fitness Consequences of Bacteriophage Φ6 Host Range Mutations Ford, Brian E.; Sun, Bruce; Carpino, James; Chapler, Elizabeth S.; Ching, Jane; Choi, Yoon; Jhun, Kevin; Kim, Jung D.; Lallos, Gregory G.; Morgenstern, Rachelle; Singh, Shalini; Theja, Sai; Dennehy, John J. 2014 2014-11-19 COMM-USE N PMC4237377 25409341.0 10.1371/journal.pone.0113078 u97oem9c 0.330916 Berkhout_2006, Bahir_2009, Rice_1992, Longdon_2018 Zhao_2018
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318 Hoff_2019 QTL-mapping and genomic prediction for bovine respiratory disease in U.S. Holsteins using sequence imputation and feature selection Hoff, Jesse L.; Decker, Jared E.; Schnabel, Robert D.; Seabury, Christopher M.; Neibergs, Holly L.; Taylor, Jeremy F. 2019 2019-07-05 COMM-USE N PMC6612181 31277567.0 10.1186/s12864-019-5941-5 x4t0vosz 0.329615 Chang_2011, Saw_A_2019, Yu_H_2007, Cheng_2013, Saw_A_2019 Neibergs_2014, Sun_J_2018, Lipkin_2016, Fisher_2011
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322 Ferdinands_2011 A Pilot Study of Host Genetic Variants Associated with Influenza-associated Deaths among Children and Young Adults Ferdinands, Jill M.; Denison, Amy M.; Dowling, Nicole F.; Jost, Heather A.; Gwinn, Marta L.; Liu, Lindy; Zaki, Sherif R.; Shay, David K. 2011 2011-12-23 PMC N PMC3311214 22172537.0 10.3201/eid1712.111002 zrz6jyma 0.327642 Scagnolari_2012, Li_W_2012, Zhang_2013, Williams_2007 Agoti_2019, Cillóniz_2012, Baier_2018, Kwon_2017
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324 Li_X_2020 Emergence of SARS-CoV-2 through Recombination and Strong Purifying Selection Xiaojun Li; Elena E. Giorgi; Manukumar Honnayakanahalli Marichann; Brian Foley; Chuan Xiao; Xiang-peng Kong; Yue Chen; Bette Korber; Feng Gao 2020 2020-03-22 BioRxiv Y 10.1101/2020.03.20.000885 7v5aln90 0.325506 Wang_2018, Grewelle_2020, Lu_P_2016, Berkhout_2006, Fauci_2006 Niemeyer_2018, Rockx_2020, Boni_2020, Zheng_2020
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326 Itoyama_2005 Identification of an alternative 5′‐untranslated exon and new polymorphisms of angiotensin‐converting enzyme 2 gene: Lack of association with SARS in the Vietnamese population Itoyama, Satoru; Keicho, Naoto; Hijikata, Minako; Quy, Tran; Phi, Nguyen Chi; Long, Hoang Thuy; Ha, Le Dang; Ban, Vo Van; Matsushita, Ikumi; Yanai, Hideki; Kirikae, Fumiko; Kirikae, Teruo; Kuratsuji, Tadatoshi; Sasazuki, Takehiko 2005 2005-06-03 PMC N PMC7138097 15937940.0 10.1002/ajmg.a.30779 3bb1zuqp 0.324689 Wang_2007, Krause_1987, Xu_J_2016, Gu_W_2004, Callison_1999 Hamano_2005, Zhu_X_2011, Noguchi_2013, Wu_S_2018
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330 Vingsbo-Lundberg_1998 Genetic control of arthritis onset, severity and chronicity in a model for rheumatoid arthritis in rats Vingsbo-Lundberg, Carina; Nordquist, Niklas; Olofsson, Peter; Sundvall, Mats; Saxne, Tore; Pettersson, Ulf; Holmdahl., Rikard 1998 1998-01-01 PMC N PMC7097458 9843218.0 10.1038/3887 8pey9xcd 0.322647 Lee_S_2016, Haasnoot_2010, Francis_2016, Fujinami_2001 Zvaifler_1988
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353 Woelfelschneider_2008 A distinct ERCC1 haplotype is associated with mRNA expression levels in prostate cancer patients Woelfelschneider, Andreas; Popanda, Odilia; Lilla, Carmen; Linseisen, Jakob; Mayer, Claudia; Celebi, Oktay; Debus, Jürgen; Bartsch, Helmut; Chang-Claude, Jenny; Schmezer, Peter 2008 2008-03-10 PMC N PMC7110227 18332046.0 10.1093/carcin/bgn067 p0ih5yw2 0.304767 Wang_2007, Yu_P_2015, Lee_S_2016, Wang_2010 Mo_J_2013, Noguchi_2013, Yang_2011, Zhou_2018
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361 Farkas_2020 Insights on early mutational events in SARS-CoV-2 virus reveal founder effects across geographical regions Carlos Farkas; Francisco Fuentes-Villalobos; Jose Luis Garrido; Jody J Haigh; María Inés Barría 2020 2020-04-12 BioRxiv Y 10.1101/2020.04.09.034462 gfwqog3x 0.301229 Whiteford_2005, Harel_2019, Chieochansin_2010, Francis_2016 Cotten_2013, Deng_2020, Park_2016
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