1 |
Kikkert_2013 |
Chapter 497 Arterivirus nsp2 Cysteine Proteinase |
Kikkert, Marjolein; Snijder, Eric J.; Gorbalenya, Alexander E. |
2013 |
2013-12-31 |
PMC |
N |
PMC7150351 |
|
10.1016/b978-0-12-382219-2.00500-7 |
f5gz8es9 |
0.947010 |
Frey_2013, Pong_2011, Choudhury_2017, Gorbalenya_1988 |
Nedialkova_2013, Nedialkova_2013, Snijder_2013, Ratia_2013 |
2 |
Stobart_2013 |
Chapter 546 Coronavirus Picornain-like Cysteine Proteinase |
Stobart, Christopher C.; Denison, Mark R. |
2013 |
2013-12-31 |
PMC |
N |
PMC7149994 |
|
10.1016/b978-0-12-382219-2.00544-5 |
01plpnzu |
0.946885 |
Murray_2017, Frey_2013, Kikkert_2013, Snijder_2013 |
Nedialkova_2013, Nedialkova_2013, Kikkert_2013, Ratia_2013 |
3 |
Delmas_2013 |
Chapter 779 Birnavirus VP4 Processing Endopeptidase |
Delmas, Bernard; Mundt, Egbert; Gorbalenya, Alexander E. |
2013 |
2013-12-31 |
PMC |
N |
PMC7150322 |
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10.1016/b978-0-12-382219-2.00779-1 |
i5gfaicu |
0.942329 |
Murray_2017, Frey_2013, Pong_2011, Stork_2011, Kikkert_2013 |
Nedialkova_2013, Nedialkova_2013, Kikkert_2013, Yin_J_2013 |
4 |
Rawlings_2013 |
Chapter 404 Introduction The Clans and Families of Cysteine Peptidases |
Rawlings, Neil D.; Barrett, Alan J. |
2013 |
2013-12-31 |
PMC |
N |
|
|
10.1016/b978-0-12-382219-2.00404-x |
9gtsqyfj |
0.932039 |
Murray_2017, Lipsitch_2014, Rodier_2007, Mooney_2013 |
Nedialkova_2013, Kikkert_2013, Nedialkova_2013, Ratia_2013 |
5 |
Snijder_2013 |
Chapter 691 Arterivirus Serine Endopeptidase |
Snijder, Eric J.; Gorbalenya, Alexander E. |
2013 |
2013-12-31 |
PMC |
N |
PMC7150272 |
|
10.1016/b978-0-12-382219-2.00691-8 |
92990iiy |
0.923079 |
Pong_2011, Frey_2013, Ryu_W_2017, Stork_2011, Shi_S_2005 |
Nedialkova_2013, Nedialkova_2013, Kikkert_2013, Yin_J_2013 |
6 |
Yin_J_2013 |
Chapter 542 Hepatitis A Virus Picornain 3C |
Yin, Jiang; Bergmann, Ernst M. |
2013 |
2013-12-31 |
PMC |
N |
PMC7149673 |
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10.1016/b978-0-12-382219-2.00540-8 |
1jzsci7a |
0.883446 |
Lipsitch_2014, Pong_2011, Frey_2013, Murray_2017, Kang_2009 |
Nedialkova_2013, Nedialkova_2013, Kikkert_2013, Ratia_2013 |
7 |
Nedialkova_2013 |
Chapter 496 Arterivirus Papain-like Proteinase 1β |
Nedialkova, Danny D.; Gorbalenya, Alexander E.; Snijder, Eric J. |
2013 |
2013-12-31 |
PMC |
N |
PMC7150162 |
|
10.1016/b978-0-12-382219-2.00499-3 |
vain6pc1 |
0.860179 |
Frey_2013, Kikkert_2013, Murray_2017, Pong_2011, Shi_S_2005 |
Nedialkova_2013, Kikkert_2013, Ratia_2013, Yin_J_2013 |
8 |
Someya_2008 |
Saturation Mutagenesis reveals that GLU54 of Norovirus 3C-like Protease is not Essential for the Proteolytic Activity |
Someya, Yuichi; Takeda, Naokazu; Wakita, Takaji |
2008 |
2008-10-06 |
PMC |
N |
PMC7109903 |
18838436.0 |
10.1093/jb/mvn130 |
hiy7f4wh |
0.851832 |
Smith_2003, Yang_2010, UNKNOWN_1987, Sato_2019 |
Piñón_1997 |
9 |
Nedialkova_2013 |
Chapter 495 Arterivirus Papain-like Proteinase 1α |
Nedialkova, Danny D.; Gorbalenya, Alexander E.; Snijder, Eric J. |
2013 |
2013-12-31 |
PMC |
N |
PMC7149378 |
|
10.1016/b978-0-12-382219-2.00498-1 |
lohhfx0n |
0.847075 |
Frey_2013, Kikkert_2013, Pong_2011, Shi_S_2005, Taschuk_2020 |
Nedialkova_2013, Kikkert_2013, Ratia_2013, Mielech_2014 |
10 |
Antalis_2013 |
Chapter 654 DESC1 and HAT Peptidases |
Antalis, Toni M.; Martin, Erik W.; Hodge, Kathryn M. |
2013 |
2013-12-31 |
PMC |
N |
PMC7150303 |
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10.1016/b978-0-12-382219-2.00654-2 |
f4r4uikg |
0.841429 |
Murray_2017, Lipsitch_2014, Rawlings_2013, Polverino_2017 |
Kikkert_2013, Nedialkova_2013, Rawlings_2013, Nedialkova_2013 |
11 |
Ratia_2013 |
Chapter 494 Coronavirus Papain-like Peptidases |
Ratia, Kiira; Mesecar, Andrew; O’Brien, Amornrat; Baker, Susan C. |
2013 |
2013-12-31 |
PMC |
N |
PMC7149924 |
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10.1016/b978-0-12-382219-2.00493-2 |
p1fttfpr |
0.839860 |
Frey_2013, Murray_2017, Kikkert_2013, Choudhury_2017 |
Nedialkova_2013, Nedialkova_2013, Kikkert_2013, Stobart_2013 |
12 |
Ge_H_2013 |
Crystal structure of wild-type and mutant human Ap4A hydrolase |
Ge, Honghua; Chen, Xiaofang; Yang, Weili; Niu, Liwen; Teng, Maikun |
2013 |
2013-03-01 |
PMC |
N |
PMC7092880 |
23384440.0 |
10.1016/j.bbrc.2013.01.095 |
yrl35s0k |
0.813587 |
Smith_2003, Ivarsson_2012, Sato_2019, Schlieker_2007 |
Myllykoski_2017, Someya_2008, Brandmann_2015, Tong_2009 |
13 |
Strauss_2013 |
Chapter 504 Sindbis Virus nsP2 Endopeptidase |
Strauss, Ellen G.; Strauss, James H. |
2013 |
2013-12-31 |
PMC |
N |
|
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10.1016/b978-0-12-382219-2.00494-4 |
7d4o2747 |
0.805274 |
Murray_2017, Lipsitch_2014, Ryu_W_2017, Frey_2013 |
|
14 |
Kessler_2013 |
Chapter 477 Otubains |
Kessler, Benedikt M. |
2013 |
2013-12-31 |
PMC |
N |
PMC7149335 |
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10.1016/b978-0-12-382219-2.00476-2 |
nbmii9jc |
0.800916 |
Choudhury_2017, Turcu_2009, Ivarsson_2012, Blank_2017, Lindner_2007 |
Nedialkova_2013, Kikkert_2013, Nedialkova_2013, Yin_J_2013 |
15 |
Tautz_2013 |
Chapter 690 Pestivirus NS2-3/NS3 Serine Peptidase |
Tautz, Norbert; Thiel, Heinz-Jürgen |
2013 |
2013-12-31 |
PMC |
N |
PMC7150157 |
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10.1016/b978-0-12-382219-2.00690-6 |
5fkwr60m |
0.797945 |
Frey_2013, Pong_2011, Ryu_W_2017, Murray_2017 |
Nedialkova_2013, Kikkert_2013, Nedialkova_2013 |
16 |
Brown_2013 |
Chapter 642 Coagulation Factor Xa |
Brown, Mark A.; Stenberg, Leisa M.; Stenflo, Johan |
2013 |
2013-12-31 |
PMC |
N |
PMC7149769 |
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10.1016/b978-0-12-382219-2.00642-6 |
ntsn7oga |
0.797564 |
Lipsitch_2014, Murray_2017, Mooney_2013, Polverino_2017, Rawlings_2013 |
Clarke_2013, Nedialkova_2013, Nedialkova_2013, Antalis_2011 |
17 |
Ye_S_2012 |
Identification and characterization of Iflavirus 3C-like protease processing activities |
Ye, Shan; Xia, Hongjie; Dong, Chen; Cheng, Zhenyun; Xia, Xiaoling; Zhang, Jiamin; Zhou, Xi; Hu, Yuanyang |
2012 |
2012-07-05 |
PMC |
N |
PMC7111971 |
22534091.0 |
10.1016/j.virol.2012.04.002 |
g2yta1ra |
0.792376 |
Pong_2011, Yang_2010, Kang_2009, Stork_2011, Meyerson_2017 |
van_der_Linden_2014, Sun_D_2019, Sun_D_2016 |
18 |
Frey_2013 |
Chapter 501 Rubella Virus Non-Structural Protease |
Frey, Teryl K |
2013 |
2013-12-31 |
PMC |
N |
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10.1016/b978-0-12-382219-2.00495-6 |
h9078ozy |
0.790963 |
Pong_2011, Kang_2009, Gorbalenya_1988, Ryu_W_2017 |
|
19 |
Chen_2010 |
Liberation of SARS-CoV main protease from the viral polyprotein: N-terminal autocleavage does not depend on the mature dimerization mode |
Chen, Shuai; Jonas, Felix; Shen, Can; Higenfeld, Rolf |
2010 |
2010-01-01 |
PMC |
N |
PMC4875104 |
21203998.0 |
10.1007/s13238-010-0011-4 |
6kkzh1tp |
0.788392 |
Smith_2003, UNKNOWN_1987, Volmer_2010, Yang_2010, Kang_2009 |
Piñón_1997 |
20 |
Kuang_2005 |
Mutational and inhibitive analysis of SARS coronavirus 3C-like protease by fluorescence resonance energy transfer-based assays |
Kuang, Wan-Fen; Chow, Lu-Ping; Wu, Mei-Hua; Hwang, Lih-Hwa |
2005 |
2005-06-17 |
PMC |
N |
PMC7092943 |
15883050.0 |
10.1016/j.bbrc.2005.04.072 |
ieucykbf |
0.786318 |
Pong_2011, Yang_2010, Cheng_2005, Meyerson_2017 |
Lin_C_2004, van_der_Linden_2014, Zhu_L_2011, Wei_P_2006 |
21 |
García-Sastre_2013 |
Chapter 499 Nairovirus Deubiquitinylating Peptidase |
García-Sastre, Adolfo; Macleod, Jesica M. Levingston |
2013 |
2013-12-31 |
PMC |
N |
PMC7150130 |
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10.1016/b978-0-12-382219-2.00502-0 |
h5dp1qhb |
0.770255 |
Ryu_W_2017, Crowe_2014, Potgieter_1986, Wang_2015, Walker_2010 |
Nedialkova_2013, Kikkert_2013, Nedialkova_2013, Ratia_2013, Yin_J_2013 |
22 |
Malet_2006 |
Expression, purification and crystallization of the SARS-CoV macro domain |
Malet, Hélène; Dalle, Karen; Brémond, Nicolas; Tocque, Fabienne; Blangy, Stéphanie; Campanacci, Valérie; Coutard, Bruno; Grisel, Sacha; Lichière, Julie; Lantez, Violaine; Cambillau, Christian; Canard, Bruno; Egloff, Marie-Pierre |
2006 |
2006-03-25 |
PMC |
N |
PMC2222557 |
16582497.0 |
10.1107/s1744309106009274 |
r8a6n9c4 |
0.769871 |
Gorbalenya_1988, UNKNOWN_1987, Shi_S_2005, Pong_2011, Volmer_2010 |
Voß_D_2009, Chen_2009, Yang_2009 |
23 |
Paudel_2019 |
Crystal structure and activity-based labeling reveal the mechanisms for linkage-specific substrate recognition by deubiquitinase USP9X |
Paudel, Prajwal; Zhang, Qi; Leung, Charles; Greenberg, Harrison C.; Guo, Yusong; Chern, Yi-Hsuan; Dong, Aiping; Li, Yanjun; Vedadi, Masoud; Zhuang, Zhihao; Tong, Yufeng |
2019 |
2019-04-09 |
None |
N |
PMC6462090 |
30914461.0 |
10.1073/pnas.1815027116 |
la0hosa4 |
0.761141 |
Sato_2019, Smith_2003, Choudhury_2017, Ivarsson_2012, Blank_2017 |
Sato_2019, Flierman_2016, Li_H_2016, Buller_2012 |
24 |
Zapata-Pérez_2017 |
Structural and functional analysis of Oceanobacillus iheyensis macrodomain reveals a network of waters involved in substrate binding and catalysis |
Zapata-Pérez, Rubén; Gil-Ortiz, Fernando; Martínez-Moñino, Ana Belén; García-Saura, Antonio Ginés; Juanhuix, Jordi; Sánchez-Ferrer, Álvaro |
2017 |
2017-04-26 |
COMM-USE |
N |
PMC5413906 |
28446708.0 |
10.1098/rsob.160327 |
gczyfzam |
0.758326 |
Smith_2003, Ivarsson_2012, Blank_2017, Choudhury_2017, Sato_2019 |
Buller_2012, Myllykoski_2017, Someya_2008, Appel_2016 |
25 |
Hewings_2017 |
Activity‐based probes for the ubiquitin conjugation–deconjugation machinery: new chemistries, new tools, and new insights |
Hewings, David S.; Flygare, John A.; Bogyo, Matthew; Wertz, Ingrid E. |
2017 |
2017-03-10 |
PMC |
N |
PMC7163952 |
28196299.0 |
10.1111/febs.14039 |
7m8bdd9y |
0.754635 |
Choudhury_2017, Blank_2017, Lindner_2007, Turcu_2009, Hodul_2017 |
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26 |
Golubtsov_2006 |
Characterization of the cysteine protease domain of Semliki Forest virus replicase protein nsP2 by in vitro mutagenesis |
Golubtsov, Andrey; Kääriäinen, Leevi; Caldentey, Javier |
2006 |
2006-02-20 |
PMC |
N |
PMC7118720 |
16466719.0 |
10.1016/j.febslet.2006.01.071 |
j3hmkfty |
0.750741 |
Yang_2010, Volmer_2010, Kang_2009, Stork_2011, Chang_2000 |
Someya_2008 |
27 |
Zhao_2012 |
Specificity of the E1-E2-E3 Enzymatic Cascade for Ubiquitin C-terminal Sequences Identified by Phage Display |
Zhao, Bo; Bhuripanyo, Karan; Schneider, Jeffrey; Zhang, Keya; Schindelin, Hermann; Boone, David; Yin, Jun |
2012 |
2012-10-02 |
PMC |
N |
PMC4652587 |
23003343.0 |
10.1021/cb300339p |
0mu5muvo |
0.745275 |
Smith_2003, UNKNOWN_1987, Ivarsson_2012, Sato_2019, Blank_2017 |
Sato_2019, Someya_2008, Catic_2007, Drag_2008 |
28 |
Lee_T_2007 |
Crystal Structures Reveal an Induced-fit Binding of a Substrate-like Aza-peptide Epoxide to SARS Coronavirus Main Peptidase |
Lee, Ting-Wai; Cherney, Maia M.; Liu, Jie; James, Karen Ellis; Powers, James C.; Eltis, Lindsay D.; James, Michael N.G. |
2007 |
2007-02-23 |
PMC |
N |
PMC7094323 |
17196984.0 |
10.1016/j.jmb.2006.11.078 |
vgnxhksv |
0.732845 |
Ivarsson_2012, UNKNOWN_1987, Smith_2003, Chan_2016, Guo_Y_2013 |
Lee_T_2005, Kanitz_2019, Zhu_L_2011, Yin_J_2007 |
29 |
Shan_2004 |
A novel auto-cleavage assay for studying mutational effects on the active site of severe acute respiratory syndrome coronavirus 3C-like protease |
Shan, Yu-Fei; Li, Shou-Feng; Xu, Gen-Jun |
2004 |
2004-11-12 |
PMC |
N |
PMC7092848 |
15474466.0 |
10.1016/j.bbrc.2004.09.088 |
ukco9p7s |
0.731870 |
Smith_2003, Yang_2010, Pong_2011, UNKNOWN_1987 |
Someya_2008, van_der_Linden_2014, Wei_P_2006 |
30 |
Lim_K_1998 |
Characterization of the Two Overlapping Papain-like Proteinase Domains Encoded in Gene 1 of the Coronavirus Infectious Bronchitis Virus and Determination of the C-Terminal Cleavage Site of an 87-kDa Protein |
Lim, K.P.; Liu, D.X. |
1998 |
1998-06-05 |
PMC |
N |
PMC7131824 |
9636369.0 |
10.1006/viro.1998.9164 |
8l5gtrmg |
0.717371 |
Yang_2010, UNKNOWN_1987, Luytjes_1988, Morikawa_1992, Chang_2000 |
Piñón_1997 |
31 |
Yin_J_2006 |
An Episulfide Cation (Thiiranium Ring) Trapped in the Active Site of HAV 3C Proteinase Inactivated by Peptide-based Ketone Inhibitors |
Yin, Jiang; Cherney, Maia M.; Bergmann, Ernst M.; Zhang, Jianmin; Huitema, Carly; Pettersson, Hanna; Eltis, Lindsay D.; Vederas, John C.; James, Michael N.G. |
2006 |
2006-08-25 |
PMC |
N |
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16860823.0 |
10.1016/j.jmb.2006.06.047 |
m70x79gh |
0.712275 |
Yang_2010, Schlieker_2007, Vaughan_2012, Saura_1999, Smith_2003 |
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32 |
Lin_J_2020 |
UL36 Encoded by Marek’s Disease Virus Exhibits Linkage-Specific Deubiquitinase Activity |
Lin, Junyan; Ai, Yongxing; Zhou, Hongda; Lv, Yan; Wang, Menghan; Xu, Jiacui; Yu, Cong; Zhang, Huanmin; Wang, Mengyun |
2020 |
2020-03-05 |
COMM-USE |
N |
PMC7084888 |
32150874.0 |
10.3390/ijms21051783 |
isf1n15n |
0.709526 |
Yan_J_2007, Smith_2003, Yang_2010, Greene_2012, Sato_2019 |
Deng_2019, Yu_L_2017 |
33 |
Muramatsu_2013 |
Autoprocessing mechanism of severe acute respiratory syndrome coronavirus 3C‐like protease (SARS‐CoV 3CL (pro)) from its polyproteins |
Muramatsu, Tomonari; Kim, Yong‐Tae; Nishii, Wataru; Terada, Takaho; Shirouzu, Mikako; Yokoyama, Shigeyuki |
2013 |
2013-03-27 |
PMC |
N |
PMC7164132 |
23452147.0 |
10.1111/febs.12222 |
qd61qvch |
0.703348 |
Volmer_2010, UNKNOWN_1987, Vaughan_2012, Yang_2010, Kang_2009 |
|
34 |
Schlieker_2007 |
Structure of a Herpesvirus-Encoded Cysteine Protease Reveals a Unique Class of Deubiquitinating Enzymes |
Schlieker, Christian; Weihofen, Wilhelm A.; Frijns, Evelyne; Kattenhorn, Lisa M.; Gaudet, Rachelle; Ploegh, Hidde L. |
2007 |
2007-03-09 |
PMC |
N |
PMC7110467 |
17349955.0 |
10.1016/j.molcel.2007.01.033 |
2b2d0m7k |
0.700772 |
Sato_2019, Smith_2003, Ivarsson_2012, Choudhury_2017 |
Deng_2019, Kanitz_2019, Someya_2008, Lombardi_2013 |
35 |
Lee_T_2005 |
Crystal Structures of the Main Peptidase from the SARS Coronavirus Inhibited by a Substrate-like Aza-peptide Epoxide |
Lee, Ting-Wai; Cherney, Maia M.; Huitema, Carly; Liu, Jie; James, Karen Ellis; Powers, James C.; Eltis, Lindsay D.; James, Michael N.G. |
2005 |
2005-11-11 |
PMC |
N |
PMC7094542 |
16219322.0 |
10.1016/j.jmb.2005.09.004 |
7ri2p5b8 |
0.697997 |
Smith_2003, Ivarsson_2012, UNKNOWN_1987, Sato_2019, Wang_2014 |
Lee_T_2007, Zhu_L_2011, Yin_J_2007, Lei_J_2014 |
36 |
Kwasna_2018 |
Discovery and Characterization of ZUFSP/ZUP1, a Distinct Deubiquitinase Class Important for Genome Stability |
Kwasna, Dominika; Abdul Rehman, Syed Arif; Natarajan, Jayaprakash; Matthews, Stephen; Madden, Ross; De Cesare, Virginia; Weidlich, Simone; Virdee, Satpal; Ahel, Ivan; Gibbs-Seymour, Ian; Kulathu, Yogesh |
2018 |
2018-04-05 |
COMM-USE |
N |
PMC5896202 |
29576527.0 |
10.1016/j.molcel.2018.02.023 |
9z350ucm |
0.697592 |
Choudhury_2017, Blank_2017, Yan_J_2007, Sato_2019, Smith_2003 |
Sato_2019, Deng_2019, Yan_J_2020 |
37 |
Békés_2016 |
Recognition of Lys48-Linked Di-ubiquitin and Deubiquitinating Activities of the SARS Coronavirus Papain-like Protease |
Békés, Miklós; van der Heden van Noort, Gerbrand J.; Ekkebus, Reggy; Ovaa, Huib; Huang, Tony T.; Lima, Christopher D. |
2016 |
2016-05-19 |
None |
N |
PMC4875570 |
27203180.0 |
10.1016/j.molcel.2016.04.016 |
uvhc50qc |
0.695823 |
Sato_2019, Choudhury_2017, Pong_2011, Meyerson_2017, Smith_2003 |
Békés_2015, Sato_2019 |
38 |
Yu_K_2012 |
Purification, crystallization and preliminary X-ray analysis of nonstructural protein 2 (nsp2) from avian infectious bronchitis virus |
Yu, Kun; Ming, Zhenhua; Li, Yuanyuan; Chen, Cheng; Bao, Zehua; Ren, Zhilin; Liu, Bofeng; Tao, Wei; Rao, Zihe; Lou, Zhiyong |
2012 |
2012-05-24 |
PMC |
N |
PMC3370919 |
22684079.0 |
10.1107/s1744309112018623 |
nei7zrnn |
0.694504 |
Ryu_W_2017, Volmer_2010, Crowe_2014, Armesto_2007, Li_C_2013 |
Yang_2009, Ma_Y_2010, Wei_L_2008, Huo_T_2015 |
39 |
Piotrowski_2008 |
Crystal structures of the X-domains of a Group-1 and a Group-3 coronavirus reveal that ADP-ribose-binding may not be a conserved property |
Piotrowski, Yvonne; Hansen, Guido; Boomaars-van der Zanden, A Linda; Snijder, Eric J; Gorbalenya, Alexander E; Hilgenfeld, Rolf |
2008 |
2008-01-01 |
PMC |
N |
PMC2708038 |
19177346.0 |
10.1002/pro.15 |
zt9fg3qs |
0.693250 |
Ryu_W_2017, Pong_2011, Gorbalenya_1988, Volmer_2010, Crowe_2014 |
Yang_2009, Brandmann_2015 |
40 |
Drag_2008 |
Positional-scanning fluorogenic substrate libraries reveal unexpected specificity determinants of deubiquitinating enzymes (DUBs) |
Drag, Marcin; Mikolajczyk, Jowita; Bekes, Miklos; Reyes-Turcu, Francisca E.; Ellman, Jonathan A.; Wilkinson, Keith D.; Salvesen, Guy S. |
2008 |
2008-10-15 |
PMC |
N |
PMC2766241 |
18601651.0 |
10.1042/bj20080779 |
hgnri5ch |
0.689341 |
Choudhury_2017, Sato_2019, Blank_2017, Smith_2003, Yan_J_2007 |
Flierman_2016, Sato_2019, Deng_2019 |
41 |
Carrington_1992 |
Characterization of the potyviral HC-pro autoproteolytic cleavage site |
Carrington, James C.; Herndon, Kerri L. |
1992 |
1992-03-31 |
PMC |
N |
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1736533.0 |
10.1016/0042-6822(92)90319-k |
vv5j1awz |
0.687021 |
Luytjes_1988, Yang_2010, Morikawa_1992, Gorbalenya_1988 |
|
42 |
Hu_T_2009 |
Two adjacent mutations on the dimer interface of SARS coronavirus 3C-like protease cause different conformational changes in crystal structure |
Hu, Tiancen; Zhang, Yu; Li, Lianwei; Wang, Kuifeng; Chen, Shuai; Chen, Jing; Ding, Jianping; Jiang, Hualiang; Shen, Xu |
2009 |
2009-06-05 |
PMC |
N |
PMC7103376 |
19409595.0 |
10.1016/j.virol.2009.03.034 |
qk8g4c7e |
0.685443 |
Smith_2003, Pong_2011, Gomis-Rüth_2003, Ivarsson_2012, Volmer_2010 |
Someya_2008, Chen_2008, Wei_P_2006, Cheng_2010 |
43 |
Wang_2014 |
Crystallization and preliminary crystallographic study of human coronavirus NL63 main protease in complex with an inhibitor |
Wang, Fenghua; Tan, Yusheng; Li, Huiyan; Chen, Xia; Wang, Jinshan; Li, Shuang; Fu, Sheng; Zhao, Qi; Chen, Cheng; Su, Dan; Yang, Haitao |
2014 |
2014-07-23 |
PMC |
N |
PMC4118806 |
25084384.0 |
10.1107/s2053230x14012953 |
ulua84c8 |
0.684312 |
Crowe_2014, Ryu_W_2017, Pong_2011, Meyerson_2017, Shi_S_2005 |
Wang_2014, Yu_K_2012, Yang_2009 |
44 |
Chisholm_2001 |
Expression and partial purification of recombinant tomato ringspot nepovirus 3C-like proteinase: comparison of the activity of the mature proteinase and the VPg-proteinase precursor |
Chisholm, Joan; Wieczorek, Andrew; Sanfaçon, Hélène |
2001 |
2001-11-05 |
PMC |
N |
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11551656.0 |
10.1016/s0168-1702(01)00344-6 |
3jelm70c |
0.682368 |
Yang_2010, Stork_2011, Morikawa_1992, UNKNOWN_1987, Pong_2011 |
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45 |
Wei_L_2008 |
Purification, crystallization and preliminary crystallographic analysis of avian infectious bronchitis virus nsp3 ADRP domain |
Wei, Lei; Chen, Cheng; Zhao, Qi; Li, Chun; Cong, Le; Xu, Xiaoling; Ma, Yanlin; Liao, Ming; Xu, Yuanyuan; Rao, Zihe |
2008 |
2008-08-09 |
PMC |
N |
PMC2531276 |
18765908.0 |
10.1107/s1744309108024391 |
7pklrmz5 |
0.678447 |
Hewson_2007, Gorbalenya_1988, Wurch_1991, Kang_2009, Li_C_2013 |
Yang_2009, Yu_K_2012 |
46 |
Zhu_L_2011 |
Peptide aldehyde inhibitors challenge the substrate specificity of the SARS-coronavirus main protease |
Zhu, Lili; George, Shyla; Schmidt, Marco F.; Al-Gharabli, Samer I.; Rademann, Jörg; Hilgenfeld, Rolf |
2011 |
2011-11-30 |
PMC |
N |
PMC7114241 |
21854807.0 |
10.1016/j.antiviral.2011.08.001 |
71wj0ajq |
0.675567 |
Yang_2010, Smith_2003, Yang_2012, UNKNOWN_1987, Vaughan_2012 |
Kuo_C_2004, Lee_T_2005, Cheng_2010, Wei_P_2006 |
47 |
Woo_P_2013 |
In Silico Analysis of ORF1ab in Coronavirus HKU1 Genome Reveals a Unique Putative Cleavage Site of Coronavirus HKU1 3C‐Like Protease |
Woo, Patrick C.Y.; Huang, Yi; Lau, Susanna K.P.; Tsoi, Hoi‐wah; Yuen, Kwok‐yung |
2013 |
2013-11-14 |
PMC |
Y |
PMC7168382 |
16237267.0 |
10.1111/j.1348-0421.2005.tb03681.x |
09ots6oj |
0.674027 |
Morikawa_1992, Gorbalenya_1988, Luytjes_1988, Firth_2009, Krause_1987 |
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48 |
Saisawang_2015 |
Chikungunya nsP2 protease is not a papain-like cysteine protease and the catalytic dyad cysteine is interchangeable with a proximal serine |
Saisawang, Chonticha; Saitornuang, Sawanan; Sillapee, Pornpan; Ubol, Sukathida; Smith, Duncan R.; Ketterman, Albert J. |
2015 |
2015-11-24 |
COMM-USE |
N |
PMC4657084 |
26597768.0 |
10.1038/srep17125 |
a097byk5 |
0.673096 |
Pong_2011, Kang_2009, Yang_2010, Meyerson_2017 |
Someya_2008, Rozanov_1995 |
49 |
Gayathri_2006 |
Crystal structure of the serine protease domain of Sesbania mosaic virus polyprotein and mutational analysis of residues forming the S1-binding pocket |
Gayathri, P.; Satheshkumar, P.S.; Prasad, K.; Nair, Smita; Savithri, H.S.; Murthy, M.R.N. |
2006 |
2006-03-15 |
PMC |
N |
PMC7111806 |
16356524.0 |
10.1016/j.virol.2005.11.011 |
livz5zuu |
0.670986 |
Yang_2010, UNKNOWN_1987, Kang_2009, Vaughan_2012, Smith_2003 |
Someya_2008, Rozanov_1995 |
50 |
Ratia_2014 |
Structural Basis for the Ubiquitin-Linkage Specificity and deISGylating Activity of SARS-CoV Papain-Like Protease |
Ratia, Kiira; Kilianski, Andrew; Baez-Santos, Yahira M.; Baker, Susan C.; Mesecar, Andrew |
2014 |
2014-05-22 |
COMM-USE |
N |
PMC4031219 |
24854014.0 |
10.1371/journal.ppat.1004113 |
2nxz69aq |
0.668992 |
Ban_J_2018, Choudhury_2017, Meyerson_2017, Smith_2003, Blank_2017 |
Yu_L_2017, Deng_2019 |
51 |
Akaji_2008 |
Evaluation of peptide-aldehyde inhibitors using R188I mutant of SARS 3CL protease as a proteolysis-resistant mutant |
Akaji, Kenichi; Konno, Hiroyuki; Onozuka, Mari; Makino, Ayumi; Saito, Hiroyuki; Nosaka, Kazuto |
2008 |
2008-11-01 |
PMC |
N |
PMC7126698 |
18845442.0 |
10.1016/j.bmc.2008.09.057 |
0w04si16 |
0.667460 |
Yang_2010, UNKNOWN_1987, Vaughan_2012, Lu_Y_1997, Chang_2000 |
Someya_2008, van_der_Linden_2014, Wei_P_2006 |
52 |
Xu_T_2005 |
Structure of the SARS coronavirus main proteinase as an active C(2) crystallographic dimer |
Xu, Ting; Ooi, Amy; Lee, Hooi Chen; Wilmouth, Rupert; Liu, Ding Xiang; Lescar, Julien |
2005 |
2005-10-20 |
PMC |
N |
PMC1978130 |
16511208.0 |
10.1107/s1744309105033257 |
i3w7beuj |
0.667429 |
Gomis-Rüth_2003, Pong_2011, Kang_2009, UNKNOWN_1987, Volmer_2010 |
Wei_P_2006, Graziano_2006, Xia_B_2011, Lee_T_2007 |
53 |
Clasman_2017 |
X-ray Structure and Enzymatic Activity Profile of a Core Papain-like Protease of MERS Coronavirus with utility for structure-based drug design |
Clasman, Jozlyn R.; Báez-Santos, Yahira M.; Mettelman, Robert C.; O’Brien, Amornrat; Baker, Susan C.; Mesecar, Andrew D. |
2017 |
2017-01-12 |
COMM-USE |
N |
PMC5228125 |
28079137.0 |
10.1038/srep40292 |
eyhoz1tb |
0.667150 |
Smith_2003, Ivarsson_2012, Pong_2011, Kang_2009, Choudhury_2017 |
Someya_2008, Kanitz_2019, Lei_J_2014 |
54 |
Pai_C_2011 |
Structure and mechanism of Escherichia coli glutathionylspermidine amidase belonging to the family of cysteine; histidine-dependent amidohydrolases/peptidases |
Pai, Chien-Hua; Wu, Hsing-Ju; Lin, Chun-Hung; Wang, Andrew H-J |
2011 |
2011-02-16 |
PMC |
N |
PMC3064834 |
21226054.0 |
10.1002/pro.589 |
jglioo0p |
0.664750 |
Smith_2003, Sato_2019, Ivarsson_2012, Blank_2017, Yang_2012 |
Someya_2008, Myllykoski_2017, Buller_2012 |
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Flierman_2016 |
Non-hydrolyzable Diubiquitin Probes Reveal Linkage-Specific Reactivity of Deubiquitylating Enzymes Mediated by S2 Pockets |
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2016 |
2016-04-21 |
None |
N |
PMC4850247 |
27066941.0 |
10.1016/j.chembiol.2016.03.009 |
og6wzc67 |
0.664105 |
Choudhury_2017, Ivarsson_2012, Sato_2019, Smith_2003 |
Drag_2008, Békés_2016, Sato_2019, Paudel_2019 |
56 |
Chen_2006 |
The rubella virus nonstructural protease recognizes itself via an internal sequence present upstream of the cleavage site for trans-activity |
Chen, H. H.; Stark, C. J.; Atreya, C. D. |
2006 |
2006-03-27 |
PMC |
N |
PMC7086818 |
16570206.0 |
10.1007/s00705-006-0744-9 |
vnz15x84 |
0.659761 |
Luytjes_1988, Yang_2010, Morikawa_1992, UNKNOWN_1987 |
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57 |
Lee_C_2007 |
Structural basis of mercury- and zinc-conjugated complexes as SARS-CoV 3C-like protease inhibitors |
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2007 |
2007-11-27 |
PMC |
N |
PMC7094272 |
17981158.0 |
10.1016/j.febslet.2007.10.048 |
9lw756zk |
0.651721 |
Smith_2003, Sato_2019, Ivarsson_2012, Schlieker_2007, Gomis-Rüth_2003 |
Grazioso_2012, Lee_C_2009, Lee_H_2013, Im_I_2009 |
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Paesen_2015 |
X-ray structure and activities of an essential Mononegavirales L-protein domain |
Paesen, Guido C.; Collet, Axelle; Sallamand, Corinne; Debart, Françoise; Vasseur, Jean-Jacques; Canard, Bruno; Decroly, Etienne; Grimes, Jonathan M. |
2015 |
2015-11-09 |
None |
N |
PMC4659945 |
26549102.0 |
10.1038/ncomms9749 |
1taxqkk2 |
0.649556 |
Blank_2017, Gorbalenya_1988, Morikawa_1992, Hou_L_2014, Smith_2003 |
Sun_D_2016, Kanitz_2019 |
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Ye_G_2016 |
Structural basis for the dimerization and substrate recognition specificity of porcine epidemic diarrhea virus 3C-like protease |
Ye, Gang; Deng, Feng; Shen, Zhou; Luo, Rui; Zhao, Ling; Xiao, Shaobo; Fu, Zhen F.; Peng, Guiqing |
2016 |
2016-07-31 |
PMC |
N |
PMC7111274 |
27128350.0 |
10.1016/j.virol.2016.04.018 |
xfnbv6o9 |
0.649556 |
Ryu_W_2017, Tallmadge_2008, Pong_2011, Crowe_2014 |
van_der_Linden_2014, Lin_C_2004 |
60 |
Turner_2013 |
Chapter 79 Aminopeptidase N |
Turner, Anthony J. |
2013 |
2013-12-31 |
PMC |
N |
PMC7150183 |
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10.1016/b978-0-12-382219-2.00079-x |
fdr0th19 |
0.647048 |
Murray_2017, Kikkert_2013, Frey_2013, Lipsitch_2014 |
Kikkert_2013, Nedialkova_2013, Nedialkova_2013, Yin_J_2013 |
61 |
Hassink_2005 |
TEB4 is a C4HC3 RING finger-containing ubiquitin ligase of the endoplasmic reticulum |
Hassink, Gerco; Kikkert, Marjolein; Voorden, Sjaak van; Lee, Shiow-Ju; Spaapen, Robbert; Laar, Theo van; Coleman, Catherine S.; Bartee, Eric; Früh, Klaus; Chau, Vincent; Wiertz, Emmanuel |
2005 |
2005-05-24 |
PMC |
N |
PMC1138973 |
15673284.0 |
10.1042/bj20041241 |
go7o1827 |
0.646304 |
Choudhury_2017, Sato_2019, Yan_J_2007, Smith_2003 |
Sato_2019, Fu_J_2000 |
62 |
Lu_Y_1997 |
Determinants of Mouse Hepatitis Virus 3C-like Proteinase Activity |
Lu, Yiqi; Denison, Mark R. |
1997 |
1997-04-14 |
PMC |
N |
PMC7131224 |
9143289.0 |
10.1006/viro.1997.8479 |
mfptcw8t |
0.645937 |
Yang_2010, Luytjes_1988, Pong_2011, Zhou_2011 |
Piñón_1997, Someya_2008 |
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Piñón_1999 |
Further Requirements for Cleavage by the Murine Coronavirus 3C-like Proteinase: Identification of a Cleavage Site within ORF1b |
Piñón, Josefina D.; Teng, Henry; Weiss, Susan R. |
1999 |
1999-10-25 |
PMC |
N |
PMC7131300 |
10544119.0 |
10.1006/viro.1999.9954 |
xpj6c0vx |
0.639139 |
Morikawa_1992, Pong_2011, Yang_2010, Luytjes_1988, Stork_2011 |
Piñón_1997, Teng_2002 |
64 |
Yin_J_2005 |
Dual Modes of Modification of Hepatitis A Virus 3C Protease by a Serine-derived β-Lactone: Selective Crystallization and Formation of a Functional Catalytic Triad in the Active Site |
Yin, Jiang; Bergmann, Ernst M.; Cherney, Maia M.; Lall, Manjinder S.; Jain, Rajendra P.; Vederas, John C.; James, Michael N.G. |
2005 |
2005-12-09 |
PMC |
N |
PMC7118759 |
16288920.0 |
10.1016/j.jmb.2005.09.074 |
bcs73g1b |
0.637603 |
Smith_2003, Yang_2010, Chan_2016, Gomis-Rüth_2003, Pong_2011 |
Grazioso_2012, Someya_2008, Kanitz_2019 |
65 |
Tian_2007 |
Molecular cloning, expression, purification and crystallographic analysis of PRRSV 3CL protease |
Tian, Xinsheng; Feng, Youjun; Zhao, Tiezhu; Peng, Hao; Yan, Jinghua; Qi, Jianxun; Jiang, Fan; Tian, Kegong; Gao, Feng |
2007 |
2007-07-28 |
PMC |
N |
PMC2335157 |
17671377.0 |
10.1107/s1744309107033234 |
4yxda0mf |
0.637109 |
Hewson_2007, Kang_2009, Li_C_2013, Pong_2011, Gorbalenya_1988 |
Yu_K_2012, Sun_D_2019, van_der_Linden_2014 |
66 |
Chen_2005 |
Enzymatic activity characterization of SARS coronavirus 3C-like protease by fluorescence resonance energy transfer technique |
Chen, Shuai; Chen, Li-li; Luo, Hai-bin; Sun, Tao; Chen, Jing; Ye, Fei; Cai, Jian-hua; Shen, Jing-kang; Shen, Xu; Jiang, Hua-liang |
2005 |
2005-01-23 |
PMC |
N |
PMC7091904 |
15659121.0 |
10.1111/j.1745-7254.2005.00010.x |
35u01je6 |
0.636838 |
Yang_2010, Largo_2016, Abou-Hamdan_2018, Choudhury_2011, David_2013 |
Kuang_2005, Kuo_C_2009, Lin_C_2004 |
67 |
Zhang_2010 |
(1)H, (13)C and (15)N resonance assignments of SARS-CoV main protease N-terminal domain |
Zhang, Shengnan; Zhong, Nan; Ren, Xiaobai; Jin, Changwen; Xia, Bin |
2010 |
2010-12-23 |
PMC |
N |
PMC7091140 |
21181312.0 |
10.1007/s12104-010-9287-9 |
iy57tjx5 |
0.632330 |
UNKNOWN_1987, Pong_2011, Smith_2003, Yang_2010, Hao_W_2017 |
Zhong_2009, Lee_T_2007 |
68 |
Chen_2011 |
Biochemical and Structural Insights into the Mechanisms of SARS Coronavirus RNA Ribose 2′-O-Methylation by nsp16/nsp10 Protein Complex |
Chen, Yu; Su, Ceyang; Ke, Min; Jin, Xu; Xu, Lirong; Zhang, Zhou; Wu, Andong; Sun, Ying; Yang, Zhouning; Tien, Po; Ahola, Tero; Liang, Yi; Liu, Xinqi; Guo, Deyin |
2011 |
2011-10-13 |
COMM-USE |
N |
PMC3192843 |
22022266.0 |
10.1371/journal.ppat.1002294 |
db7stx56 |
0.630936 |
Pong_2011, Stork_2011, Yasuda-Inoue_2013, Gorbalenya_1988, Meyerson_2017 |
Subissi_2014 |
69 |
Kasperkiewicz_2017 |
Emerging challenges in the design of selective substrates, inhibitors and activity‐based probes for indistinguishable proteases |
Kasperkiewicz, Paulina; Poreba, Marcin; Groborz, Katarzyna; Drag, Marcin |
2017 |
2017-01-29 |
PMC |
N |
PMC7164106 |
28052575.0 |
10.1111/febs.14001 |
jrk8yexx |
0.629384 |
Ivarsson_2012, Rytkönen_2007, Baek_2014, Taschuk_2020 |
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70 |
Wojdyla_2009 |
Structure of the X (ADRP) domain of nsp3 from feline coronavirus |
Wojdyla, Justyna A.; Manolaridis, Ioannis; Snijder, Eric J.; Gorbalenya, Alexander E.; Coutard, Bruno; Piotrowski, Yvonne; Hilgenfeld, Rolf; Tucker, Paul A. |
2009 |
2009-12-04 |
PMC |
N |
PMC7161637 |
19966415.0 |
10.1107/s0907444909040074 |
49big4kq |
0.627713 |
UNKNOWN_1987, Volmer_2010, Gomis-Rüth_2003, Callison_1999, Dokland_2004 |
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71 |
Cheng_2010 |
Mutation of Glu-166 Blocks the Substrate-Induced Dimerization of SARS Coronavirus Main Protease |
Cheng, Shu-Chun; Chang, Gu-Gang; Chou, Chi-Yuan |
2010 |
2010-04-07 |
None |
N |
PMC2849084 |
20371333.0 |
10.1016/j.bpj.2009.12.4272 |
xrb8zibf |
0.624514 |
Smith_2003, Ivarsson_2012, Sato_2019, UNKNOWN_1987, Chan_2016 |
Wei_P_2006, Someya_2008, van_der_Linden_2014 |
72 |
Wang_2009 |
Expression, crystallization and preliminary crystallographic study of human coronavirus HKU1 nonstructural protein 9 |
Wang, Wei; Wei, Lei; Yang, Anqi; He, Teng; Yuen, K. Y.; Chen, Cheng; Rao, Zihe |
2009 |
2009-04-28 |
PMC |
N |
PMC2675602 |
19407394.0 |
10.1107/s1744309109014055 |
5xltdxwk |
0.622384 |
Crowe_2014, Hewson_2007, Ryu_W_2017, Gorbalenya_1988 |
Yu_K_2012, Yang_2009, Ma_Y_2010 |
73 |
Wu_A_2015 |
Prediction and biochemical analysis of putative cleavage sites of the 3C-like protease of Middle East respiratory syndrome coronavirus |
Wu, Andong; Wang, Yi; Zeng, Cong; Huang, Xingyu; Xu, Shan; Su, Ceyang; Wang, Min; Chen, Yu; Guo, Deyin |
2015 |
2015-10-02 |
PMC |
N |
PMC7114542 |
26036787.0 |
10.1016/j.virusres.2015.05.018 |
0bx704ao |
0.619967 |
Pong_2011, Gorbalenya_1988, Morikawa_1992, Stork_2011 |
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74 |
Kuo_C_2015 |
Characterization and Inhibition of the Main Protease of Severe Acute Respiratory Syndrome Coronavirus |
Kuo, Chih‐Jung; Liang, Po‐Huang |
2015 |
2015-02-25 |
PMC |
N |
PMC7159133 |
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10.1002/cben.201400031 |
lgrk3w7w |
0.618472 |
Naito_2007, Berkhout_2006, Kang_2009, Yang_2010, Volmer_2010 |
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75 |
Ng_L_2000 |
Further Characterization of the Coronavirus Infectious Bronchitis Virus 3C-like Proteinase and Determination of a New Cleavage Site |
Ng, Lisa F.P.; Liu, D.X. |
2000 |
2000-06-20 |
PMC |
N |
PMC7131205 |
10873746.0 |
10.1006/viro.2000.0330 |
s71ail2e |
0.617977 |
Yang_2010, Volmer_2010, UNKNOWN_1987, Kang_2009, Chen_2015 |
Piñón_1997, Lim_K_1998 |
76 |
Shan_2005 |
Study on Substrate Specificity at Subsites for Severe Acute Respiratory Syndrome Coronavirus 3CL Protease |
Shan, Yu-Fei; Xu, Gen-Jun |
2005 |
2005-12-23 |
PMC |
N |
PMC7109883 |
16331324.0 |
10.1111/j.1745-7270.2005.00114.x |
32z5llgd |
0.614414 |
Smith_2003, Wu_G_2005, Yang_2012, UNKNOWN_1987 |
van_der_Linden_2014, Someya_2008 |
77 |
Ricagno_2006 |
Crystallization and preliminary X-ray diffraction analysis of Nsp15 from SARS coronavirus |
Ricagno, Stéfano; Coutard, Bruno; Grisel, Sacha; Brémond, Nicolas; Dalle, Karen; Tocque, Fabienne; Campanacci, Valérie; Lichière, Julie; Lantez, Violaine; Debarnot, Claire; Cambillau, Christian; Canard, Bruno; Egloff, Marie-Pierre |
2006 |
2006-03-25 |
PMC |
N |
PMC2222560 |
16582498.0 |
10.1107/s1744309106009407 |
bk601l5a |
0.613503 |
Pong_2011, Armesto_2007, Gorbalenya_1988, Stork_2011, Keep_2014 |
Yang_2009, Yu_K_2012, Ma_Y_2010, Huo_T_2015 |
78 |
Zhang_2010 |
Three-dimensional domain swapping as a mechanism to lock the active conformation in a super-active octamer of SARS-CoV main protease |
Zhang, Shengnan; Zhong, Nan; Xue, Fei; Kang, Xue; Ren, Xiaobai; Chen, Jiaxuan; Jin, Changwen; Lou, Zhiyong; Xia, Bin |
2010 |
2010-04-01 |
PMC |
N |
PMC4875095 |
21203949.0 |
10.1007/s13238-010-0044-8 |
gdmp0re0 |
0.612673 |
UNKNOWN_1987, Pong_2011, Gomis-Rüth_2003, Ivarsson_2012, Stork_2011 |
Zhong_2009, Lee_T_2007, Kanitz_2019, Tsai_2010 |
79 |
Lin_C_2004 |
Characterization of trans- and cis-cleavage activity of the SARS coronavirus 3CLpro protease: basis for the in vitro screening of anti-SARS drugs |
Lin, Cheng-Wen; Tsai, Chang-Hai; Tsai, Fuu-Jen; Chen, Pei-Jer; Lai, Chien-Chen; Wan, Lei; Chiu, Hua-Hao; Lin, Kuan-Hsun |
2004 |
2004-09-10 |
PMC |
Y |
PMC7127318 |
15358553.0 |
10.1016/j.febslet.2004.08.017 |
kczhig5k |
0.609596 |
Pong_2011, Kang_2009, Meyerson_2017, Stork_2011, Brockway_2005 |
van_der_Linden_2014, Kuang_2005, Zhu_L_2011 |
80 |
Buller_2012 |
Autoproteolytic Activation of ThnT Results in Structural Reorganization Necessary for Substrate Binding and Catalysis |
Buller, Andrew R.; Labonte, Jason W.; Freeman, Michael F.; Wright, Nathan T.; Schildbach, Joel F.; Townsend, Craig A. |
2012 |
2012-09-28 |
None |
N |
PMC3428426 |
22706025.0 |
10.1016/j.jmb.2012.06.012 |
g0h0itzs |
0.606023 |
Ivarsson_2012, Smith_2003, Chan_2016, Sato_2019, Schlieker_2007 |
Someya_2008, Myllykoski_2017, Thangapandian_2012, Kanitz_2019 |
81 |
Wei_P_2006 |
The N-terminal octapeptide acts as a dimerization inhibitor of SARS coronavirus 3C-like proteinase |
Wei, Ping; Fan, Keqiang; Chen, Hao; Ma, Liang; Huang, Changkang; Tan, Lei; Xi, Dong; Li, Chunmei; Liu, Ying; Cao, Aoneng; Lai, Luhua |
2006 |
2006-01-20 |
PMC |
N |
PMC7092940 |
16329994.0 |
10.1016/j.bbrc.2005.11.102 |
67brxejx |
0.605079 |
Smith_2003, Pong_2011, Ivarsson_2012, Kang_2009, Yang_2010 |
Cheng_2010, van_der_Linden_2014, Someya_2008 |
82 |
Sato_2019 |
Structural insights into ubiquitin recognition and Ufd1 interaction of Npl4 |
Sato, Yusuke; Tsuchiya, Hikaru; Yamagata, Atsushi; Okatsu, Kei; Tanaka, Keiji; Saeki, Yasushi; Fukai, Shuya |
2019 |
2019-12-13 |
COMM-USE |
N |
PMC6910952 |
31836717.0 |
10.1038/s41467-019-13697-y |
xmbetn8q |
0.605002 |
Smith_2003, Yan_J_2007, Ivarsson_2012, Blank_2017 |
Li_H_2016, Deng_2019, Choudhury_2017 |
83 |
Catic_2007 |
Screen for ISG15-crossreactive Deubiquitinases |
Catic, André; Fiebiger, Edda; Korbel, Gregory A.; Blom, Daniël; Galardy, Paul J.; Ploegh, Hidde L. |
2007 |
2007-07-25 |
COMM-USE |
N |
PMC1919423 |
17653289.0 |
10.1371/journal.pone.0000679 |
z5klydpi |
0.604889 |
Choudhury_2017, Blank_2017, Yan_J_2007, Greene_2012, Ban_J_2018 |
Basters_2017, Deng_2019, Catic_2007 |
84 |
Turlington_2013 |
Discovery of N-(benzo[1,2,3]triazol-1-yl)-N-(benzyl)acetamido)phenyl) carboxamides as severe acute respiratory syndrome coronavirus (SARS-CoV) 3CLpro inhibitors: Identification of ML300 and noncovalent nanomolar inhibitors with an induced-fit binding |
Turlington, Mark; Chun, Aspen; Tomar, Sakshi; Eggler, Aimee; Grum-Tokars, Valerie; Jacobs, Jon; Daniels, J. Scott; Dawson, Eric; Saldanha, Adrian; Chase, Peter; Baez-Santos, Yahira M.; Lindsley, Craig W.; Hodder, Peter; Mesecar, Andrew D.; Stauffer, Shaun R. |
2013 |
2013-11-15 |
None |
N |
PMC3878165 |
24080461.0 |
10.1016/j.bmcl.2013.08.112 |
e0qq0d75 |
0.604815 |
Pong_2011, Naito_2007, Schlieker_2007, Ghosh_2007 |
Grazioso_2012, Paramonova_2017, Novikov_2013, Konno_2013 |
85 |
Saikatendu_2005 |
Structural Basis of Severe Acute Respiratory Syndrome Coronavirus ADP-Ribose-1″-Phosphate Dephosphorylation by a Conserved Domain of nsP3 |
Saikatendu, Kumar Singh; Joseph, Jeremiah S.; Subramanian, Vanitha; Clayton, Tom; Griffith, Mark; Moy, Kin; Velasquez, Jeffrey; Neuman, Benjamin W.; Buchmeier, Michael J.; Stevens, Raymond C.; Kuhn, Peter |
2005 |
2005-11-30 |
PMC |
N |
PMC7126892 |
16271890.0 |
10.1016/j.str.2005.07.022 |
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Gorbalenya_1988, Pong_2011, Volmer_2010, Hao_W_2017, UNKNOWN_1987 |
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2018 |
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COMM-USE |
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PMC5807507 |
29426867.0 |
10.1038/s41598-018-21056-y |
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0.601917 |
Ivarsson_2012, Blank_2017, Sato_2019, Gorbalenya_1988, UNKNOWN_1987 |
Myllykoski_2017, Yin_J_2007, Kanitz_2019 |
87 |
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Kinetic, Mutational, and Structural Studies of the Venezuelan Equine Encephalitis Virus Nonstructural Protein 2 Cysteine Protease |
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2016 |
2016-05-19 |
PMC |
N |
PMC5290728 |
27030368.0 |
10.1021/acs.biochem.5b00992 |
156utn7m |
0.601028 |
Yang_2010, Smith_2003, UNKNOWN_1987, Vaughan_2012, Pong_2011 |
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88 |
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USP18 – a multifunctional component in the interferon response |
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COMM-USE |
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PMC6240716 |
30126853.0 |
10.1042/bsr20180250 |
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0.600784 |
Choudhury_2017, Blank_2017, Ban_J_2018, Yan_J_2007 |
Deng_2019, Mielech_2014, Basters_2017 |
89 |
Raghav_2015 |
Chalcones, semicarbazones and pyrazolines as inhibitors of cathepsins B, H and L |
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2015 |
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PMC |
N |
PMC7124378 |
26193682.0 |
10.1016/j.ijbiomac.2015.07.029 |
g4omlaht |
0.600646 |
Pager_2006, Yang_2010, Saura_1999, Vidal-Albalat_2016 |
Grazioso_2012, Vidal-Albalat_2016, Song_2012, Kishore_Kumar_2010 |
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Quantifying tetrahedral adduct formation and stabilization in the cysteine and the serine proteases |
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2015 |
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PMC |
N |
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26169698.0 |
10.1016/j.bbapap.2015.07.006 |
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Cleary_2014, Smith_2003, Schlieker_2007, Someya_2008 |
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2009 |
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PMC |
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PMC2762595 |
19319935.0 |
10.1002/pro.76 |
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UNKNOWN_1987, Ivarsson_2012, Smith_2003, Gomis-Rüth_2003, Sato_2019 |
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PMC7112362 |
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10.1016/bs.mie.2018.12.037 |
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Choudhury_2017, Lindner_2007, Bailey-Elkin_2017, Viswanathan_2010, Taschuk_2020 |
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The papain-like protease of avian infectious bronchitis virus has deubiquitinating activity |
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PMC7087251 |
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10.1007/s00705-017-3328-y |
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Ban_J_2018, Meyerson_2017, Greene_2012, Volmer_2010, Pong_2011 |
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PMC7131396 |
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10.1016/0042-6822(92)90268-t |
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Yang_2010, Volmer_2010, Zhou_2011, Kang_2009 |
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COMM-USE |
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PMC1847702 |
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Gorbalenya_1988, Choudhury_2017, Taschuk_2020, Mushegian_2018, Dolja_2006 |
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Mönttinen_2019, Rawlings_2019, Rawlings_1994, Schlieker_2007 |
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A single MIU motif of MINDY‐1 recognizes K48‐linked polyubiquitin chains |
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2017 |
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PMC5331195 |
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Choudhury_2017, Yan_J_2007, Ban_J_2018, Blank_2017, Smith_2003 |
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Biguanide is a modifiable pharmacophore for recruitment of endogenous Zn(2+) to inhibit cysteinyl cathepsins: review and implications |
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COMM-USE |
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PMC6647370 |
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Smith_2003, Ivarsson_2012, Sato_2019, Schlieker_2007, Ho_S_2009 |
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PMC3053173 |
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10.1107/s1744309111002867 |
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Pong_2011, Stork_2011, Gorbalenya_1988, Yasuda-Inoue_2013, Kang_2009 |
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Structurally- and dynamically-driven allostery of the chymotrypsin-like proteases of SARS, Dengue and Zika viruses |
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PMC7111307 |
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Pong_2011, Vaughan_2012, Meyerson_2017, Stork_2011, Kang_2009 |
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102 |
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PMC |
N |
PMC4958508 |
27373336.0 |
10.1016/j.molcel.2016.05.031 |
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Smith_2003, Ivarsson_2012, Choudhury_2017, Blank_2017, Sato_2019 |
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Alpha-ketoamides as broad-spectrum inhibitors of coronavirus and enterovirus replication |
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BioRxiv |
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10.1101/2020.02.10.936898 |
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Chapter 100 Angiotensin-Converting Enzyme-2 |
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PMC7150073 |
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10.1016/b978-0-12-382219-2.00100-9 |
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Murray_2017, Lipsitch_2014, Frey_2013, Kikkert_2013, David_2013 |
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Structural basis for catalysis and ubiquitin recognition by the Severe acute respiratory syndrome coronavirus papain‐like protease |
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PMC |
N |
PMC7161584 |
24531491.0 |
10.1107/s1399004713031040 |
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Sato_2019, Smith_2003, Ivarsson_2012, Schlieker_2007, UNKNOWN_1987 |
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α-Ketoamides as Broad-Spectrum Inhibitors of Coronavirus and Enterovirus Replication: Structure-Based Design, Synthesis, and Activity Assessment |
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2020 |
2020-02-11 |
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PMC7098070 |
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10.1021/acs.jmedchem.9b01828 |
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Naito_2007, Yang_2010, Volmer_2010, Rice_1992, Kang_2009 |
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Structural Basis of Inhibition Specificities of 3C and 3C-like Proteases by Zinc-coordinating and Peptidomimetic Compounds |
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2009 |
2009-01-14 |
PMC |
N |
PMC2658058 |
19144641.0 |
10.1074/jbc.m807947200 |
2d1sio6w |
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Pong_2011, Kang_2009, Ryu_W_2017, Li_C_2013, Meyerson_2017 |
Kuo_C_2008, van_der_Linden_2014, Kanitz_2019, Grazioso_2012 |
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1998 |
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PMC |
N |
PMC7131314 |
9657947.0 |
10.1006/viro.1998.9199 |
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Luytjes_1988, Wurch_1991, Yang_2010, Firth_2009, Lee_H_1991 |
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2013 |
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PMC |
N |
PMC7161611 |
23633583.0 |
10.1107/s0907444913001315 |
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Ivarsson_2012, Smith_2003, UNKNOWN_1987, Gomis-Rüth_2003, Sato_2019 |
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Structure-based design, synthesis, and biological evaluation of peptidomimetic SARS-CoV 3CLpro inhibitors |
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2007 |
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None |
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PMC2112940 |
17855091.0 |
10.1016/j.bmcl.2007.08.031 |
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Pong_2011, Ramajayam_2010, Kuang_2005, Stork_2011 |
Thanigaimalai_2013, Ramajayam_2010, Konno_2016, Konno_2013 |
111 |
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Hemoglobin Cleavage Site-Specificity of the Plasmodium falciparum Cysteine Proteases Falcipain-2 and Falcipain-3 |
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COMM-USE |
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PMC2663817 |
19357776.0 |
10.1371/journal.pone.0005156 |
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Yang_2012, Smith_2003, Yang_2010, Saura_1999 |
Grazioso_2012 |
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The conserved macrodomains of the non-structural proteins of Chikungunya virus and other pathogenic positive strand RNA viruses function as mono-ADP-ribosylhydrolases |
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COMM-USE |
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PMC5288732 |
28150709.0 |
10.1038/srep41746 |
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Meyerson_2017, Stork_2011, Yasuda-Inoue_2013, Pong_2011, Kang_2009 |
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Crystallization and preliminary crystallographic study of Feline infectious peritonitis virus main protease in complex with an inhibitor |
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2014 |
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PMC |
N |
PMC4259223 |
25484209.0 |
10.1107/s2053230x14022390 |
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Ryu_W_2017, Volmer_2010, Lu_P_2016, Meyerson_2017, Pong_2011 |
Valle-Casuso_2020, Chen_2019, Li_J_2006 |
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A Mechanistic View of Enzyme Inhibition and Peptide Hydrolysis in the Active Site of the SARS-CoV 3C-like Peptidase |
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2007 |
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PMC |
N |
PMC7094781 |
17599357.0 |
10.1016/j.jmb.2007.06.001 |
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Smith_2003, Schlieker_2007, Pong_2011, Sato_2019, Ivarsson_2012 |
Kanitz_2019, Lee_T_2005, Lee_T_2007, Wei_P_2006 |
115 |
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PMC |
N |
PMC3545077 |
23141588.0 |
10.1016/j.virol.2012.10.010 |
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Rice_1992, Stork_2011, Pong_2011, Tallmadge_2008, Yang_2010 |
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Large-scale purification and crystallization of the endoribonuclease XendoU: troubleshooting with His-tagged proteins |
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PMC |
N |
PMC2197201 |
16511328.0 |
10.1107/s1744309106006373 |
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0.563318 |
Stork_2011, Gorbalenya_1988, Pong_2011, Volmer_2010, Staple_2005 |
Piñón_1997, Someya_2008, Guarino_2005 |
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Insights into Cleavage Specificity from the Crystal Structure of Foot-and-Mouth Disease Virus 3C Protease Complexed with a Peptide Substrate |
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2010 |
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PMC |
N |
PMC7099390 |
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10.1016/j.jmb.2009.10.048 |
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Pong_2011, Morikawa_1992, Stork_2011, Ivarsson_2012, Gorbalenya_1988 |
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Structure and Cleavage Specificity of the Chymotrypsin-Like Serine Protease (3CLSP/nsp4) of Porcine Reproductive and Respiratory Syndrome Virus (PRRSV) |
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2009 |
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PMC |
N |
PMC7094510 |
19646449.0 |
10.1016/j.jmb.2009.07.062 |
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0.561294 |
Pong_2011, Gorbalenya_1988, Kang_2009, UNKNOWN_1987, Volmer_2010 |
Piñón_1997 |
119 |
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Rawlings, Neil D.; Barrett, Alan J. |
1994 |
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PMC |
N |
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7845226.0 |
10.1016/0076-6879(94)44034-4 |
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Schlieker_2007, Rawlings_1994, Ivarsson_2012, UNKNOWN_1987 |
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Structures of the Middle East respiratory syndrome coronavirus 3C-like protease reveal insights into substrate specificity |
Needle, Danielle; Lountos, George T.; Waugh, David S. |
2015 |
2015-04-24 |
None |
N |
PMC4427198 |
25945576.0 |
10.1107/s1399004715003521 |
1stnmrkk |
0.559206 |
Pong_2011, UNKNOWN_1987, Gorbalenya_1988, Morikawa_1992, Volmer_2010 |
Thornbrough_2016 |
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Activity of a purified His-tagged 3C-like proteinase from the coronavirus infectious bronchitis virus |
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N |
PMC7126649 |
10392722.0 |
10.1016/s0168-1702(99)00011-8 |
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Morikawa_1992, Vennema_1991, Luytjes_1988, Yang_2010 |
Piñón_1997, van_der_Linden_2014 |
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Structural Basis of Ubiquitin Recognition by the Deubiquitinating Protease USP2 |
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2006 |
2006-08-31 |
PMC |
N |
PMC7126176 |
16905103.0 |
10.1016/j.str.2006.06.012 |
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Choudhury_2017, Blank_2017, Yan_J_2007, Smith_2003, Sato_2019 |
Sato_2019, Deng_2019, Basters_2017 |
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SARS hCoV papain-like protease is a unique Lys48 linkage-specific di-distributive deubiquitinating enzyme |
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2015 |
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PMC |
N |
PMC4447217 |
25764917.0 |
10.1042/bj20141170 |
01rpxu69 |
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Meyerson_2017, Ban_J_2018, Pong_2011, Choudhury_2017, Greene_2012 |
Mielech_2014, Yu_L_2017 |
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Crystal structure of the papain-like protease of MERS coronavirus reveals unusual, potentially druggable active-site features |
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2014 |
2014-09-30 |
PMC |
N |
PMC7113875 |
24992731.0 |
10.1016/j.antiviral.2014.06.011 |
xtb68nk3 |
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Pong_2011, Gomis-Rüth_2003, Hao_W_2017, Smith_2003, Ivarsson_2012 |
Lee_T_2005 |
125 |
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Profiling of Substrate Specificity of SARS-CoV 3CL(pro) |
Chuck, Chi-Pang; Chong, Lin-Tat; Chen, Chao; Chow, Hak-Fun; Wan, David Chi-Cheong; Wong, Kam-Bo |
2010 |
2010-10-06 |
COMM-USE |
N |
PMC2950840 |
20949131.0 |
10.1371/journal.pone.0013197 |
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0.552464 |
Morikawa_1992, Yang_2012, UNKNOWN_1987, Wu_G_2005, Smith_2003 |
Kuo_C_2009 |
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Expression, purification, and characterization of SARS coronavirus RNA polymerase |
Cheng, Ao; Zhang, Wei; Xie, Youhua; Jiang, Weihong; Arnold, Eddy; Sarafianos, Stefan G.; Ding, Jianping |
2005 |
2005-05-10 |
PMC |
N |
PMC7111802 |
15840516.0 |
10.1016/j.virol.2005.02.017 |
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Pong_2011, Stork_2011, Meyerson_2017, Kang_2009 |
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PMC3044768 |
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Critical Assessment of the Important Residues Involved in the Dimerization and Catalysis of MERS Coronavirus Main Protease |
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PMC4682845 |
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Smith_2003, Hao_W_2017, Pong_2011, UNKNOWN_1987, Gorbalenya_1988 |
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Probing the impact of nairovirus genomic diversity on viral ovarian tumor domain protease (vOTU) structure and deubiquitinase activity |
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Choudhury_2017, Berkhout_2006, Trobaugh_2017, Haasnoot_2010, Taschuk_2020 |
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PMC2386736 |
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10.1110/ps.083450408 |
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Choudhury_2017, Greene_2012, Ban_J_2018, Blank_2017, Meyerson_2017 |
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The catalysis of the SARS 3C‐like protease is under extensive regulation by its extra domain |
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PMC7164011 |
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10.1111/j.1742-4658.2006.05130.x |
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Smith_2003, Ivarsson_2012, UNKNOWN_1987, Volmer_2010, Chang_2000 |
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PMC7163949 |
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10.1046/j.1432-1327.2000.01277.x |
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Smith_2003, UNKNOWN_1987, Ivarsson_2012, Yang_2012, Chang_2000 |
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Crystal structure of dengue virus methyltransferase without S-adenosyl-L-methionine |
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PMC7113791 |
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10.1016/j.antiviral.2014.09.003 |
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Pong_2011, Stork_2011, Ivarsson_2012, Gomis-Rüth_2003, Gorbalenya_1988 |
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PMC2720334 |
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10.1107/s1744309109024749 |
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PMC4376780 |
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Nidovirus papain-like proteases: Multifunctional enzymes with protease, deubiquitinating and deISGylating activities |
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PMC4125544 |
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10.1016/j.virusres.2014.01.025 |
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Meyerson_2017, Ban_J_2018, Stork_2011, Rice_1992, Yasuda-Inoue_2013 |
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Nucleolar-nucleoplasmic shuttling of TARG1 and its control by DNA damage-induced poly-ADP-ribosylation and by nucleolar transcription |
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2018-04-30 |
None |
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PMC5928194 |
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10.1038/s41598-018-25137-w |
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Blank_2017, Ivanova_2015, Stork_2011, Yasuda-Inoue_2013, Greene_2012 |
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Molecular modeling and chemical modification for finding peptide inhibitor against severe acute respiratory syndrome coronavirus main proteinase |
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PMC |
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PMC7094278 |
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10.1016/j.ab.2004.10.003 |
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Smith_2003, UNKNOWN_1987, Yang_2012, Yang_2010, Wang_2014 |
Du_Q_2004, Wei_P_2006, Taranto_2008, Zhu_L_2011 |
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Structural and mutational analysis of the interaction between the Middle-East respiratory syndrome coronavirus (MERS-CoV) papain-like protease and human ubiquitin |
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PMC |
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PMC7090527 |
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10.1007/s12250-016-3742-4 |
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Choudhury_2017, Ivarsson_2012, Sato_2019, Smith_2003, Pong_2011 |
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Biochemical characterization of recombinant Avihepatovirus 3C protease and its localization |
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COMM-USE |
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PMC6489322 |
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10.1186/s12985-019-1155-3 |
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Structural Basis for Inhibiting Porcine Epidemic Diarrhea Virus Replication with the 3C-Like Protease Inhibitor GC376 |
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COMM-USE |
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PMC7077318 |
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10.3390/v12020240 |
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Lu_P_2016, Ryu_W_2017, Tallmadge_2008, Yasui_2016, Rice_1992 |
Sun_D_2016, van_der_Linden_2014, Jiang_2017, Yao_C_2018 |
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Engineering a novel endopeptidase based on SARS 3CL(pro) |
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COMM-USE |
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PMC7081961 |
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10.2144/000113303 |
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Morikawa_1992, Wurch_1991, Luytjes_1988, Yang_2010, Vennema_1991 |
Piñón_1997, van_der_Linden_2014 |
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Interferon-Stimulated Gene 15 and the Protein ISGylation System |
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PMC |
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PMC3021351 |
21190487.0 |
10.1089/jir.2010.0110 |
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Choudhury_2017, Martín-Vicente_2017, Ban_J_2018, Lindner_2007, El_Motiam_2019 |
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Crystallization and preliminary crystallographic study of Porcine epidemic diarrhea virus main protease in complex with an inhibitor |
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2014 |
2014-11-14 |
PMC |
N |
PMC4259222 |
25484208.0 |
10.1107/s2053230x14021876 |
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0.531773 |
Ryu_W_2017, Tallmadge_2008, Lu_P_2016, Rice_1992, Yasui_2016 |
Wang_2014, Yang_2009, Ma_Y_2010 |
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An allosteric inhibitor of substrate recognition by the SCF(Cdc4) ubiquitin ligase |
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2010 |
2010-06-27 |
PMC |
N |
PMC4445864 |
20581844.0 |
10.1038/nbt.1646 |
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0.531124 |
Smith_2003, Sato_2019, Ivarsson_2012, Blank_2017, Choudhury_2017 |
Sato_2019, Li_H_2016, Myllykoski_2017 |
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Characterization of SARS main protease and inhibitor assay using a fluorogenic substrate |
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2004-06-11 |
PMC |
N |
PMC7134607 |
15147951.0 |
10.1016/j.bbrc.2004.04.098 |
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Yang_2010, Vaughan_2012, Pong_2011, Stork_2011, Kang_2009 |
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PMC |
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PMC7131520 |
9568037.0 |
10.1006/viro.1998.9058 |
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Luytjes_1988, Morikawa_1992, Pong_2011, Vennema_1991, Wurch_1991 |
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A Compact Viral Processing Proteinase/Ubiquitin Hydrolase from the OTU Family |
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2013 |
2013-08-15 |
None |
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PMC3744425 |
23966860.0 |
10.1371/journal.ppat.1003560 |
49u2onq0 |
0.528055 |
Pong_2011, Stork_2011, Kang_2009, Gorbalenya_1988, Meyerson_2017 |
Rozanov_1995, Piñón_1997 |
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A cysteine-rich metal-binding domain from rubella virus non-structural protein is essential for viral protease activity and virus replication |
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2008 |
2008-12-23 |
PMC |
N |
PMC2908387 |
18795894.0 |
10.1042/bj20081468 |
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0.527098 |
Pong_2011, Kang_2009, Yang_2010, Volmer_2010, Gorbalenya_1988 |
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150 |
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Identification of aromatic amino acid residues in conserved region VI of the large polymerase of vesicular stomatitis virus is essential for both guanine-N-7 and ribose 2'-O methyltransferases |
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2010 |
2010-12-20 |
PMC |
N |
PMC7111938 |
20961592.0 |
10.1016/j.virol.2010.09.017 |
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Blank_2017, Gorbalenya_1988, Kang_2009, Stork_2011, Freistadt_2007 |
Rozanov_1995 |
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Activity-Based Ubiquitin Probes for Investigation of Deubiquitinases |
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2019 |
2019-12-31 |
PMC |
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PMC7157470 |
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10.1016/b978-0-12-409547-2.14672-4 |
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Blank_2017, Choudhury_2017, Yan_J_2007, Greene_2012 |
Sato_2019, Flierman_2016, van_der_Heden_van_Noort_2018 |
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Synthetic and semi-synthetic strategies to study ubiquitin signaling |
van Tilburg, Gabriëlle BA; Elhebieshy, Angela F; Ovaa, Huib |
2016 |
2016-06-30 |
PMC |
N |
PMC7125694 |
27315041.0 |
10.1016/j.sbi.2016.05.022 |
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0.523291 |
Choudhury_2017, Cox_E_2015, Lindner_2007, Ivarsson_2012 |
Wimmer_2015, Flierman_2016, Sato_2019 |
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HyperISGylation of Old World Monkey ISG15 in Human Cells |
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2008 |
2008-06-18 |
COMM-USE |
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PMC2423471 |
18560560.0 |
10.1371/journal.pone.0002427 |
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Choudhury_2017, Ban_J_2018, Yan_J_2007, Berkhout_2006, Ivarsson_2012 |
Deng_2019, Leu_S_2010, Kim_Y_2016 |
154 |
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Decoupling deISGylating and deubiquitinating activities of the MERS virus papain-like protease |
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2020 |
2020-02-29 |
PMC |
N |
PMC7114298 |
31765674.0 |
10.1016/j.antiviral.2019.104661 |
vj4ivvng |
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Meyerson_2017, Ban_J_2018, Stork_2011, Kang_2009, Pong_2011 |
Yu_L_2017, Deng_2019, Mielech_2014, Mielech_2014 |
155 |
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Inhibitor Recognition Specificity of MERS-CoV Papain-like Protease May Differ from That of SARS-CoV |
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2015 |
2015-03-06 |
None |
N |
PMC4845099 |
25746232.0 |
10.1021/cb500917m |
wd5bzsol |
0.522047 |
Pong_2011, Meyerson_2017, Ban_J_2018, Li_C_2017, Kang_2009 |
Zhu_L_2011, Niemeyer_2018, Lee_H_2013 |
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Identification and expressional analysis of two cathepsins from half-smooth tongue sole (Cynoglossus semilaevis) |
Chen, Ling; Zhang, Min; Sun, Li |
2011 |
2011-12-31 |
None |
N |
PMC7128119 |
21939771.0 |
10.1016/j.fsi.2011.09.012 |
wllruqt6 |
0.521561 |
Yang_2010, UNKNOWN_1987, Yang_2012, Volmer_2010, Luytjes_1988 |
Yeh_H_2009, Xu_S_2020 |
157 |
Punekar_2012 |
Crystal structure of RlmM, the 2′O-ribose methyltransferase for C2498 of Escherichia coli 23S rRNA |
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2012 |
2012-08-24 |
NONCOMM |
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PMC3488215 |
22923526.0 |
10.1093/nar/gks727 |
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0.521070 |
Hou_L_2014, Gorbalenya_1988, Sato_2019, Morikawa_1992, Krause_1987 |
Someya_2008, Kanitz_2019, Myllykoski_2017, Scrima_2004 |
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Heteroaromatic ester inhibitors of hepatitis A virus 3C proteinase: Evaluation of mode of action |
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2008 |
2008-05-15 |
PMC |
N |
PMC7125897 |
18407505.0 |
10.1016/j.bmc.2008.03.059 |
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Pong_2011, Kang_2009, Stork_2011, Yang_2010, Naito_2007 |
Grazioso_2012, Kuo_C_2008, van_der_Linden_2014, Becker_2016 |
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Polyprotein cleavage mechanism of SARS CoV Mpro and chemical modification of the octapeptide |
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2004 |
2004-11-30 |
PMC |
N |
PMC7115412 |
15501516.0 |
10.1016/j.peptides.2004.06.018 |
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Smith_2003, Deng_2006, Wang_2014, UNKNOWN_1986, Langosch_2011 |
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The coronavirus macrodomain is required to prevent PARP-mediated inhibition of virus replication and enhancement of IFN expression |
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COMM-USE |
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PMC6521996 |
31095648.0 |
10.1371/journal.ppat.1007756 |
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Yasuda-Inoue_2013, Ban_J_2018, Meyerson_2017, Blank_2017, Stork_2011 |
Krieg_2020 |
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Viral OTU Deubiquitinases: A Structural and Functional Comparison |
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2014 |
2014-03-27 |
COMM-USE |
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PMC3968130 |
24676359.0 |
10.1371/journal.ppat.1003894 |
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Taschuk_2020, Haasnoot_2010, Odom_2009, Dolja_2006 |
Mielech_2014, Yu_L_2017, Deng_2019 |
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Expression, crystallization and preliminary crystallographic study of the C-terminal half of nsp2 from SARS coronavirus |
Li, Yuanyuan; Ren, Zhilin; Bao, Zehua; Ming, Zhenhua; Li, Xuemei |
2011 |
2011-06-30 |
PMC |
N |
PMC3144797 |
21795795.0 |
10.1107/s1744309111017829 |
myr48meo |
0.516657 |
Hewson_2007, Shen_2005, Crowe_2014, Narayanan_2003, Pong_2011 |
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The Controversial Roles of ADP-Ribosyl Hydrolases MACROD1, MACROD2 and TARG1 in Carcinogenesis |
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2020-03-05 |
COMM-USE |
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PMC7139919 |
32151005.0 |
10.3390/cancers12030604 |
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Haasnoot_2010, Blank_2017, Rytkönen_2007, Boggio_2006, Berkhout_2006 |
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Characterizing the PRRSV nsp2 Deubiquitinase Reveals Dispensability of Cis-Activity for Replication and a Link of nsp2 to Inflammation Induction |
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2019 |
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COMM-USE |
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PMC6832237 |
31561412.0 |
10.3390/v11100896 |
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Ban_J_2018, Meyerson_2017, Kumar_2016, Kang_2009, Greene_2012 |
Deng_2019, Yu_L_2017, Mielech_2014 |
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Chikungunya virus infectivity, RNA replication and non-structural polyprotein processing depend on the nsP2 protease’s active site cysteine residue |
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COMM-USE |
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PMC5109220 |
27845418.0 |
10.1038/srep37124 |
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Tallmadge_2008, Ryu_W_2017, Pong_2011, Rice_1992 |
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Cooperative enzymatic control of N-acyl amino acids by PM20D1 and FAAH |
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COMM-USE |
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PMC7145423 |
32271712.0 |
10.7554/elife.55211 |
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Schmidt_1982, Ivarsson_2012, Schlesinger_1983, Cosson_2013 |
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The crystal structure of main protease from mouse hepatitis virus A59 in complex with an inhibitor |
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2019-04-16 |
PMC |
N |
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30833083.0 |
10.1016/j.bbrc.2019.02.105 |
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Pong_2011, Kang_2009, Meyerson_2017, Volmer_2010, Stork_2011 |
Hu_X_2016 |
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Comparison of two multiplex PCR techniques for the study of respiratory viruses in Mexican children with pneumonia |
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2018-09-30 |
PMC |
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PMC7148932 |
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10.1016/j.eimce.2018.01.002 |
h39v4t6z |
0.512206 |
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García-León_2018 |
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Xue_X_2007 |
Production of Authentic SARS-CoV Mpro with Enhanced Activity: Application as a Novel Tag-cleavage Endopeptidase for Protein Overproduction |
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2007 |
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PMC |
N |
PMC7094453 |
17189639.0 |
10.1016/j.jmb.2006.11.073 |
fjfc3rto |
0.511305 |
Volmer_2010, UNKNOWN_1987, Yang_2010, Pong_2011, Kang_2009 |
Wang_2009, Lin_C_2004, van_der_Linden_2014, Zhu_L_2011 |
170 |
Zhang_2004 |
Exploring the binding mechanism of the main proteinase in SARS-associated coronavirus and its implication to anti-SARS drug design |
Zhang, Xue Wu; Yap, Yee Leng |
2004 |
2004-05-01 |
PMC |
N |
PMC7125554 |
15080921.0 |
10.1016/j.bmc.2004.02.015 |
occ03hp0 |
0.511157 |
Davaro_2013, Garcia–Moliner_2013, Lu_P_2016, Tallmadge_2008, Franks_2013 |
Du_L_2007, Niemeyer_2018, Zhu_L_2011 |
171 |
Fan_K_2005 |
The substrate specificity of SARS coronavirus 3C-like proteinase |
Fan, Keqiang; Ma, Liang; Han, Xiaofeng; Liang, Huanhuan; Wei, Ping; Liu, Ying; Lai, Luhua |
2005 |
2005-04-15 |
PMC |
N |
PMC7092912 |
15752746.0 |
10.1016/j.bbrc.2005.02.061 |
02o93wlh |
0.510701 |
Naito_2007, Pong_2011, Gorbalenya_1988, Morikawa_1992, Callison_1999 |
Wei_P_2006, van_der_Linden_2014, Zhu_L_2011 |
172 |
Srivastava_2008 |
Proteolytic processing of a precursor protein for a growth-promoting peptide by a subtilisin serine protease in Arabidopsis |
Srivastava, Renu; Liu, Jian-Xiang; Howell, Stephen H |
2008 |
2008-08-01 |
COMM-USE |
N |
PMC2667306 |
18643977.0 |
10.1111/j.1365-313x.2008.03598.x |
vg57cnqw |
0.509363 |
Chen_2015, UNKNOWN_1987, Yang_2010, Blank_2017, Esposito_2005 |
Denison_1992 |
173 |
Cleary_2014 |
Hemiacetal stabilization in a chymotrypsin inhibitor complex and the reactivity of the hydroxyl group of the catalytic serine residue of chymotrypsin |
Cleary, Jennifer A.; Doherty, William; Evans, Paul; Malthouse, J.Paul G. |
2014 |
2014-06-30 |
PMC |
N |
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24657307.0 |
10.1016/j.bbapap.2014.03.008 |
60rfq6kk |
0.507943 |
Smith_2003, Cleary_2015, Someya_2008, Ho_S_2009 |
Buller_2012, Cleary_2015, Someya_2008, Grazioso_2012 |
174 |
Verschueren_2008 |
A Structural View of the Inactivation of the SARS Coronavirus Main Proteinase by Benzotriazole Esters |
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2008 |
2008-06-23 |
PMC |
N |
PMC7110992 |
18559270.0 |
10.1016/j.chembiol.2008.04.011 |
wevcmq30 |
0.507313 |
Ivarsson_2012, Smith_2003, Schlieker_2007, UNKNOWN_1987, Choudhury_2017 |
Wei_P_2006, Zhu_L_2011, Lee_T_2005, Grazioso_2012 |
175 |
Xia_B_2011 |
Activation and maturation of SARS-CoV main protease |
Xia, Bin; Kang, Xue |
2011 |
2011-04-01 |
PMC |
N |
PMC4875205 |
21533772.0 |
10.1007/s13238-011-1034-1 |
0oh701o3 |
0.507313 |
Volmer_2010, Meyerson_2017, Kang_2009, Pong_2011, Xu_Z_2012 |
Du_L_2007, Niemeyer_2018, Simmons_2013, Haga_2010 |
176 |
Fehr_2020 |
The impact of PARPs and ADP-ribosylation on inflammation and host–pathogen interactions |
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2020 |
2020-02-06 |
None |
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PMC7050484 |
32029454.0 |
10.1101/gad.334425.119 |
qsm96t72 |
0.506771 |
Taschuk_2020, Blank_2017, Shi_J_2012, Rytkönen_2007, Bailey-Elkin_2017 |
Feijs_2020, Bütepage_2015, Deng_2019 |
177 |
Lamberto_2017 |
Structure-guided development of a potent and selective noncovalent active site inhibitor of USP7 |
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2017 |
2017-12-01 |
PMC |
N |
PMC5749250 |
29056421.0 |
10.1016/j.chembiol.2017.09.003 |
ihnl8ajr |
0.505539 |
Choudhury_2017, Berkhout_2006, Blank_2017, Lindner_2007, Ivarsson_2012 |
Lee_H_2013, Deng_2019, Ahmed-Belkacem_2016 |
178 |
Rawlings_2009 |
A large and accurate collection of peptidase cleavages in the MEROPS database |
Rawlings, Neil D. |
2009 |
2009-11-02 |
NONCOMM |
N |
PMC2790309 |
20157488.0 |
10.1093/database/bap015 |
0rq0wdpq |
0.503448 |
Ivarsson_2012, Staple_2005, Lee_C_2017, Baranov_2009, Callison_1999 |
Turner_2010, Yin_J_2007 |
179 |
Schmidt_2008 |
Sensitized Detection of Inhibitory Fragments and Iterative Development of Non‐Peptidic Protease Inhibitors by Dynamic Ligation Screening |
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2008 |
2008-03-17 |
PMC |
N |
PMC7159527 |
18348134.0 |
10.1002/anie.200704594 |
7dgbc4um |
0.501092 |
Smith_2003, Ivarsson_2012, Tosoni_2015, Chan_2016, Gendron_2010 |
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180 |
Curry_2007 |
Foot-and-mouth disease virus 3C protease: Recent structural and functional insights into an antiviral target |
Curry, Stephen; Roqué-Rosell, Núria; Zunszain, Patricia A.; Leatherbarrow, Robin J. |
2007 |
2007-12-31 |
PMC |
N |
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16979372.0 |
10.1016/j.biocel.2006.07.006 |
urw64az2 |
0.501045 |
Rice_1992, den_Boon_2010, Trobaugh_2017, Tallmadge_2008 |
Steinberger_2014, Sun_D_2016, Ao_D_2015 |
181 |
Ma_Y_2010 |
Crystallization and preliminary X-ray diffraction studies of infectious bronchitis virus nonstructural protein 9 |
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2010 |
2010-05-29 |
PMC |
N |
PMC2882775 |
20516605.0 |
10.1107/s174430911001417x |
jst6h157 |
0.500480 |
Hewson_2007, Crowe_2014, Gorbalenya_1988, Li_C_2013, Ryu_W_2017 |
Yang_2009, Yu_K_2012, Wei_L_2008, Ricagno_2006 |
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Conformational Flexibility of a Short Loop near the Active Site of the SARS-3CLpro is Essential to Maintain Catalytic Activity |
Li, Chunmei; Teng, Xin; Qi, Yifei; Tang, Bo; Shi, Hailing; Ma, Xiaomin; Lai, Luhua |
2016 |
2016-02-16 |
COMM-USE |
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PMC4754693 |
26879383.0 |
10.1038/srep20918 |
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0.500480 |
Smith_2003, Gomis-Rüth_2003, Ivarsson_2012, UNKNOWN_1987 |
Someya_2008, Kanitz_2019, Wei_P_2006, Hu_T_2009 |
183 |
Anand_2002 |
Structure of coronavirus main proteinase reveals combination of a chymotrypsin fold with an extra α-helical domain |
Anand, Kanchan; Palm, Gottfried J.; Mesters, Jeroen R.; Siddell, Stuart G.; Ziebuhr, John; Hilgenfeld, Rolf |
2002 |
2002-07-01 |
PMC |
N |
PMC126080 |
12093723.0 |
10.1093/emboj/cdf327 |
2sfqsfm1 |
0.500414 |
Ivarsson_2012, UNKNOWN_1987, Smith_2003, Pong_2011, Sato_2019 |
Piñón_1997, Tsai_2010, Rozanov_1995 |
184 |
Myllykoski_2013 |
Crystallographic Analysis of the Reaction Cycle of 2′,3′-Cyclic Nucleotide 3′-Phosphodiesterase, a Unique Member of the 2H Phosphoesterase Family |
Myllykoski, Matti; Raasakka, Arne; Lehtimäki, Mari; Han, Huijong; Kursula, Inari; Kursula, Petri |
2013 |
2013-11-15 |
PMC |
N |
PMC7094350 |
23831225.0 |
10.1016/j.jmb.2013.06.012 |
og8osavo |
0.500387 |
Ivarsson_2012, Smith_2003, UNKNOWN_1987, Krause_1987, Gorbalenya_1988 |
Myllykoski_2017, Kanitz_2019, Buller_2012, Brandmann_2015 |
185 |
Martin_2018 |
The methyltransferase domain of the Sudan ebolavirus L protein specifically targets internal adenosines of RNA substrates, in addition to the cap structure |
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2018 |
2018-09-06 |
NONCOMM |
N |
PMC6125687 |
30192980.0 |
10.1093/nar/gky637 |
243u68j8 |
0.500358 |
Stork_2011, Yasuda-Inoue_2013, Pong_2011, Meyerson_2017, Blank_2017 |
Ferron_2019, Gopinath_2015 |
186 |
Chou_2008 |
Thiopurine analogues inhibit papain-like protease of severe acute respiratory syndrome coronavirus |
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2008 |
2008-04-15 |
PMC |
N |
PMC7092826 |
18313035.0 |
10.1016/j.bcp.2008.01.005 |
5szqfufh |
0.496323 |
Naito_2007, Berkhout_2006, Li_C_2017, Klein_2011, Haasnoot_2010 |
Lee_H_2013, Cheng_2015, Zhu_L_2011 |
187 |
Xu_A_2010 |
Characterization of the biochemical properties and identification of amino acids forming the catalytic center of 3C-like proteinase of porcine reproductive and respiratory syndrome virus |
Xu, Ao-Tian; Zhou, Yan-Jun; Li, Guo-Xin; Yu, Hai; Yan, Li-Ping; Tong, Guang-Zhi |
2010 |
2010-09-24 |
PMC |
N |
PMC7088359 |
20865444.0 |
10.1007/s10529-010-0370-1 |
l3si3jpn |
0.496134 |
Yang_2010, Abou-Hamdan_2018, Largo_2016, David_2013, Choudhury_2011 |
Someya_2008, Tian_2009 |
188 |
Wang_2015 |
Cathepsin L Mediates the Degradation of Novel APP C-Terminal Fragments |
Wang, Haizhi; Sang, Nianli; Zhang, Can; Raghupathi, Ramesh; Tanzi, Rudolph E.; Saunders, Aleister |
2015 |
2015-04-28 |
PMC |
N |
PMC4521409 |
25910068.0 |
10.1021/acs.biochem.5b00329 |
esns9xk6 |
0.496067 |
Greene_2012, Blank_2017, Pridgeon_2008, Chen_2015 |
Basak_2009, Benharouga_2001, Edwards_2008 |
189 |
Li_J_2006 |
Preliminary crystallographic analysis of avian infectious bronchitis virus main protease |
Li, Jun; Shen, Wei; Liao, Ming; Bartlam, Mark |
2006 |
2006-12-16 |
PMC |
N |
PMC2330114 |
17183167.0 |
10.1107/s1744309106052341 |
40pa5g89 |
0.496067 |
Ryu_W_2017, Lu_P_2016, Armesto_2007, Keep_2014, Volmer_2010 |
Wang_2014, Ren_X_2008, Ma_Y_2010 |
190 |
Appel_2016 |
Structure of the sirtuin‐linked macrodomain SAV0325 from Staphylococcus aureus |
Appel, C. Denise; Feld, Geoffrey K.; Wallace, Bret D.; Williams, R. Scott |
2016 |
2016-07-07 |
PMC |
N |
PMC5338245 |
27345688.0 |
10.1002/pro.2974 |
tzxnlw0j |
0.495925 |
Ivarsson_2012, Smith_2003, Blank_2017, Sato_2019, Choudhury_2017 |
Deng_2019, Buller_2012, Michalska_2018, Jankevicius_2013 |
191 |
Swatek_2018 |
Irreversible inactivation of ISG15 by a viral leader protease enables alternative infection detection strategies |
Swatek, Kirby N.; Aumayr, Martina; Pruneda, Jonathan N.; Visser, Linda J.; Berryman, Stephen; Kueck, Anja F.; Geurink, Paul P.; Ovaa, Huib; van Kuppeveld, Frank J. M.; Tuthill, Tobias J.; Skern, Tim; Komander, David |
2018 |
2018-03-06 |
None |
N |
PMC5877979 |
29463763.0 |
10.1073/pnas.1710617115 |
3s86w4iw |
0.495773 |
Meyerson_2017, Ban_J_2018, Pong_2011, Greene_2012, Stork_2011 |
van_der_Linden_2014, Deng_2019, Mielech_2014, Yu_L_2017 |
192 |
Jin_X_2013 |
Characterization of the guanine-N7 methyltransferase activity of coronavirus nsp14 on nucleotide GTP |
Jin, Xu; Chen, Yu; Sun, Ying; Zeng, Cong; Wang, Yi; Tao, Jiali; Wu, Andong; Yu, Xiao; Zhang, Zhou; Tian, Jie; Guo, Deyin |
2013 |
2013-09-30 |
PMC |
N |
PMC7114466 |
23702198.0 |
10.1016/j.virusres.2013.05.001 |
p628h7c8 |
0.495522 |
Yasuda-Inoue_2013, Stork_2011, Pong_2011, Meyerson_2017, Li_C_2013 |
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193 |
Hodul_2017 |
Function of the Deubiquitinating Enzyme USP46 in the Nervous System and Its Regulation by WD40-Repeat Proteins |
Hodul, Molly; Dahlberg, Caroline L.; Juo, Peter |
2017 |
2017-12-14 |
COMM-USE |
N |
PMC5735123 |
29302259.0 |
10.3389/fnsyn.2017.00016 |
oqte7dx2 |
0.495522 |
Choudhury_2017, Blank_2017, Lindner_2007, Taschuk_2020 |
Deng_2019, Turcu_2009, Sato_2019 |
194 |
Shimamoto_2015 |
Fused-ring structure of decahydroisoquinolin as a novel scaffold for SARS 3CL protease inhibitors |
Shimamoto, Yasuhiro; Hattori, Yasunao; Kobayashi, Kazuya; Teruya, Kenta; Sanjoh, Akira; Nakagawa, Atsushi; Yamashita, Eiki; Akaji, Kenichi |
2015 |
2015-02-15 |
None |
N |
PMC7111320 |
25614110.0 |
10.1016/j.bmc.2014.12.028 |
3sgbpn13 |
0.494800 |
Yang_2010, Smith_2003, Schlieker_2007, Pong_2011 |
Yoshizawa_2020, Konno_2013, Niu_C_2008, Thanigaimalai_2013 |
195 |
Stewart_2015 |
Structure-based identification of functional residues in the nucleoside-2′-O-methylase domain of Bluetongue virus VP4 capping enzyme |
Stewart, Meredith E.; Roy, Polly |
2015 |
2015-02-24 |
None |
N |
PMC4359970 |
25834778.0 |
10.1016/j.fob.2015.02.001 |
vzel6r43 |
0.494263 |
Stork_2011, Pong_2011, Kang_2009, Gorbalenya_1988, Volmer_2010 |
Someya_2008, Punekar_2012 |
196 |
Denesyuk_2020 |
NBCZone: Universal three-dimensional construction of eleven amino acids near the catalytic nucleophile and base in the superfamily of (chymo)trypsin-like serine fold proteases |
Denesyuk, Alexander I.; Johnson, Mark S.; Salo-Ahen, Outi M.H.; Uversky, Vladimir N.; Denessiouk, Konstantin |
2020 |
2020-06-15 |
PMC |
N |
PMC7124590 |
32151723.0 |
10.1016/j.ijbiomac.2020.03.025 |
swrfpnut |
0.492440 |
Gorbalenya_1988, Yang_2012, Wu_G_2005, Yang_2010, Luytjes_1988 |
Someya_2008, Rozanov_1995, Kanitz_2019 |
197 |
Michalska_2018 |
Functional plasticity of antibacterial EndoU toxins |
Michalska, Karolina; Nhan, Dinh Quan; Willett, Julia L. E.; Stols, Lucy M.; Eschenfeldt, William H.; Jones, Allison M.; Nguyen, Josephine Y.; Koskiniemi, Sanna; Low, David A.; Goulding, Celia W.; Joachimiak, Andrzej; Hayes, Christopher S. |
2018 |
2018-08-01 |
PMC |
N |
PMC6173971 |
29923643.0 |
10.1111/mmi.14007 |
zbm8uy0z |
0.491644 |
Gorbalenya_1988, Ivarsson_2012, Hou_L_2014, Volmer_2010, UNKNOWN_1987 |
van_der_Linden_2014, Singleton_2018, Deng_2019 |
198 |
Myllykoski_2017 |
Structural aspects of nucleotide ligand binding by a bacterial 2H phosphoesterase |
Myllykoski, Matti; Kursula, Petri |
2017 |
2017-01-31 |
COMM-USE |
N |
PMC5283653 |
28141848.0 |
10.1371/journal.pone.0170355 |
0a3okta0 |
0.490864 |
Ivarsson_2012, Gorbalenya_1988, Smith_2003, Chan_2016, Sundaramoorthy_2018 |
Buller_2012, Kanitz_2019 |
199 |
John_2016 |
X-Ray Structure and Inhibition of 3C-like Protease from Porcine Epidemic Diarrhea Virus |
St. John, Sarah E.; Anson, Brandon J.; Mesecar, Andrew D. |
2016 |
2016-05-13 |
COMM-USE |
N |
PMC4865815 |
27173881.0 |
10.1038/srep25961 |
u4mvk89w |
0.489239 |
Volmer_2010, Callison_1999, Gorbalenya_1988, Luytjes_1988, Auewarakul_2005 |
Kuo_C_2008, Sun_D_2016 |
200 |
Lim_L_2014 |
Dynamically-Driven Enhancement of the Catalytic Machinery of the SARS 3C-Like Protease by the S284-T285-I286/A Mutations on the Extra Domain |
Lim, Liangzhong; Shi, Jiahai; Mu, Yuguang; Song, Jianxing |
2014 |
2014-07-18 |
COMM-USE |
N |
PMC4103764 |
25036652.0 |
10.1371/journal.pone.0101941 |
u9zazctj |
0.489151 |
Smith_2003, Ivarsson_2012, UNKNOWN_1987, Chan_2016, Yang_2012 |
Someya_2008, Shi_J_2011, Kanitz_2019, Buller_2012 |
201 |
van_Aken_2006 |
Expression, purification, and in vitro activity of an arterivirus main proteinase |
van Aken, Danny; Benckhuijsen, Willemien E.; Drijfhout, Jan W.; Wassenaar, Alfred L.M.; Gorbalenya, Alexander E.; Snijder, Eric J. |
2006 |
2006-09-30 |
PMC |
N |
PMC7114227 |
16527369.0 |
10.1016/j.virusres.2006.01.025 |
y1cm58r6 |
0.488376 |
Pong_2011, Yang_2010, Stork_2011, Kang_2009, Tibbles_1999 |
Eshaghi_2005, Piñón_1997 |
202 |
Daczkowski_2017 |
Structural Insights into the Interaction of Coronavirus Papain-Like Proteases and Interferon-Stimulated Gene Product 15 from Different Species |
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2017 |
2017-06-02 |
PMC |
N |
PMC5634334 |
28438633.0 |
10.1016/j.jmb.2017.04.011 |
xs32un2d |
0.488092 |
Meyerson_2017, Rice_1992, Pong_2011, Ban_J_2018, Trobaugh_2017 |
Niemeyer_2018 |
203 |
Fehr_2018 |
Viral Macrodomains: Unique Mediators of Viral Replication and Pathogenesis |
Fehr, Anthony R.; Jankevicius, Gytis; Ahel, Ivan; Perlman, Stanley |
2018 |
2018-07-31 |
PMC |
N |
PMC6003825 |
29268982.0 |
10.1016/j.tim.2017.11.011 |
km0qcmlh |
0.487462 |
Taschuk_2020, Yasuda-Inoue_2013, den_Boon_2010, Klein_2011, Choudhury_2017 |
Sun_D_2016, Watanabe_2019, Deng_2019, Mielech_2014 |
204 |
Tao_H_2006 |
Template‐assisted rational design of peptide inhibitors of furin using the lysine fragment of the mung bean trypsin inhibitor |
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2006 |
2006-07-28 |
PMC |
N |
PMC7164071 |
16934032.0 |
10.1111/j.1742-4658.2006.05393.x |
k8nh8pd5 |
0.486883 |
Yang_2010, Smith_2003, UNKNOWN_1987, Yang_2012, Wu_G_2005 |
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205 |
Hajjou_1995 |
Catalytic site studies on tuna (Thunnus albacares) pyloric caeca aminopeptidase |
Hajjou, Mustapha; Le Gal, Yves |
1995 |
1995-09-06 |
PMC |
N |
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7669802.0 |
10.1016/0167-4838(95)00099-g |
sqxe9eys |
0.486421 |
Smith_2003, Yang_2010, Yang_2012, Blank_2017 |
Someya_2008, Buller_2012, Myllykoski_2017 |
206 |
Durfee_2010 |
IDENTIFICATION AND VALIDATION OF ISG15 TARGET PROTEINS |
Durfee, Larissa A.; Huibregtse, Jon M. |
2010 |
2010-01-01 |
PMC |
N |
PMC5912676 |
21222286.0 |
10.1007/978-1-4419-6676-6_18 |
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0.485986 |
Choudhury_2017, Ban_J_2018, Martín-Vicente_2017, Haasnoot_2010, Blank_2017 |
Morales_2013, Jeon_2010, Catic_2007 |
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Rozanov_1995 |
Papain-like proteinase of turnip yellow mosaic virus: a prototype of a new viral proteinase group |
Rozanov, M. N.; Drugeon, G.; Haenni, A. -L. |
1995 |
1995-01-01 |
PMC |
N |
PMC7086826 |
7710355.0 |
10.1007/bf01309862 |
r7ofnxf1 |
0.485983 |
Luytjes_1988, Gorbalenya_1988, Yang_2010, UNKNOWN_1987, Zhou_2011 |
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Aminobenzosuberone Scaffold as a Modular Chemical Tool for the Inhibition of Therapeutically Relevant M1 Aminopeptidases |
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2018 |
2018-10-11 |
None |
N |
PMC6222927 |
30314342.0 |
10.3390/molecules23102607 |
70ie4jqf |
0.484628 |
Yang_2010, Schlieker_2007, Mönttinen_2019, Ivarsson_2012, Saura_1999 |
Grazioso_2012, Joshi_2017, Opsenica_2011, Mahalingam_2011 |
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Crystal Structure of Human Enterovirus 71 3C Protease |
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2011 |
2011-05-06 |
PMC |
N |
PMC7094522 |
21396941.0 |
10.1016/j.jmb.2011.03.007 |
ar1yjoux |
0.483774 |
Pong_2011, Stork_2011, Kang_2009, Meyerson_2017, Rice_1992 |
Yao_C_2018, Sun_D_2016 |
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An Antiviral Mechanism of Nitric Oxide Inhibition of a Viral Protease |
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1999 |
1999-01-01 |
PMC |
N |
PMC7129050 |
10023767.0 |
10.1016/s1074-7613(00)80003-5 |
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Identification of a Nidovirales Orf1a N7-guanine cap Methyltransferase signature-sequence as a genetic marker of large genome Tobaniviridae |
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COMM-USE |
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PMC2940758 |
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PMC1642617 |
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10.1128/jvi.01428-06 |
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Long Range Cooperative Interactions Modulate Dimerization in SARS 3CL(pro) |
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PMC2570436 |
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10.1021/bi0616302 |
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PMC |
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PMC7125518 |
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10.1016/j.bmc.2008.06.015 |
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Hepatitis E Virus Cysteine Protease Has Papain Like Properties Validated by in silico Modeling and Cell-Free Inhibition Assays |
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PMC7103348 |
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Further in vitro characterization of mouse hepatitis virus papain-like proteinase 1: Cleavage sequence requirements within PP1a |
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PMC7095356 |
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PMC4528106 |
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10.1074/jbc.m115.651463 |
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PMC |
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PMC7164119 |
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10.1046/j.1432-1327.2000.01348.x |
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Macro Domain from Middle East Respiratory Syndrome Coronavirus (MERS-CoV) Is an Efficient ADP-ribose Binding Module: CRYSTAL STRUCTURE AND BIOCHEMICAL STUDIES |
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PMC4777827 |
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10.1074/jbc.m115.700542 |
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10.1128/jvi.00975-16 |
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Molecular modeling and analysis of hepatitis E virus (HEV) papain-like cysteine protease |
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PMC7161644 |
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10.1107/s0907444903016779 |
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PMC7134593 |
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Pong_2011, Lu_P_2016, Tallmadge_2008, Volmer_2010, Rice_1992 |
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PMC7130002 |
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10.1016/j.pep.2007.10.008 |
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PMC7094300 |
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PMC7113757 |
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10.1016/j.antiviral.2013.12.012 |
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X-ray Structure of Main Protease of the Novel Coronavirus SARS-CoV-2 Enables Design of α-Ketoamide Inhibitors |
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Characterization of Rv0888, a Novel Extracellular Nuclease from Mycobacterium tuberculosis |
Dang, Guanghui; Cao, Jun; Cui, Yingying; Song, Ningning; Chen, Liping; Pang, Hai; Liu, Siguo |
2016 |
2016-01-08 |
COMM-USE |
N |
PMC4733049 |
26742696.0 |
10.1038/srep19033 |
hx7r6kaq |
0.384924 |
Volmer_2010, Berkhout_2006, Kang_2009, Stork_2011, Haasnoot_2010 |
van_der_Linden_2014, Ren_X_2008, Orlik-Eisel_1990, Michalska_2018 |
337 |
Feijs_2013 |
Macrodomain-containing proteins: regulating new intracellular functions of mono(ADP-ribosyl)ation |
Feijs, Karla L. H.; Forst, Alexandra H.; Verheugd, Patricia; Lüscher, Bernhard |
2013 |
2013-06-05 |
PMC |
N |
PMC7097401 |
23736681.0 |
10.1038/nrm3601 |
7004350c |
0.384110 |
Blank_2017, Lipsitch_2014, Choudhury_2017, Dubois_2016, Rytkönen_2007 |
Bütepage_2015, Žaja_2012, Feijs_2020, Jankevicius_2013 |
338 |
Lindner_2007 |
Deubiquitination in virus infection |
Lindner, Holger A. |
2007 |
2007-06-05 |
PMC |
N |
PMC7103280 |
17291557.0 |
10.1016/j.virol.2006.12.035 |
ogs4mq0v |
0.384000 |
Choudhury_2017, Taschuk_2020, Blank_2017, El_Motiam_2019 |
Bailey-Elkin_2017, Watanabe_2019, Fung_2018, Wimmer_2015 |
339 |
Lei_J_2018 |
Nsp3 of coronaviruses: Structures and functions of a large multi-domain protein |
Lei, Jian; Kusov, Yuri; Hilgenfeld, Rolf |
2018 |
2018-01-31 |
PMC |
N |
PMC7113668 |
29128390.0 |
10.1016/j.antiviral.2017.11.001 |
ebaosne3 |
0.383667 |
Hao_W_2017, UNKNOWN_1987, Gorbalenya_1988, Volmer_2010, Chang_2005 |
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340 |
García-Saura_2019 |
An uncharacterized FMAG_01619 protein from Fusobacterium mortiferum ATCC 9817 demonstrates that some bacterial macrodomains can also act as poly-ADP-ribosylhydrolases |
García-Saura, Antonio Ginés; Zapata-Pérez, Rubén; Hidalgo, José Francisco; Cabanes, Juana; Gil-Ortiz, Fernando; Sánchez-Ferrer, Álvaro |
2019 |
2019-03-01 |
COMM-USE |
N |
PMC6397177 |
30824723.0 |
10.1038/s41598-019-39691-4 |
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0.382181 |
Haasnoot_2010, Berkhout_2006, Taschuk_2020, Volmer_2010, Klein_2011 |
Rohrbeck_2016, Lu_Q_2012 |
341 |
Krichel_2020 |
Processing of the SARS-CoV pp1a/ab nsp7–10 region |
Krichel, Boris; Falke, Sven; Hilgenfeld, Rolf; Redecke, Lars; Uetrecht, Charlotte |
2020 |
2020-03-13 |
None |
N |
PMC7078746 |
32083638.0 |
10.1042/bcj20200029 |
6jdvrggp |
0.381332 |
Volmer_2010, Pong_2011, Stork_2011, den_Boon_2010, Kang_2009 |
Krichel_2019, Niemeyer_2018, Yu_L_2017 |
342 |
Han_Y_2009 |
Identification and functional characterization of regions that can be crosslinked to RNA in the helicase-like domain of BaMV replicase |
Han, Yu-Tsung; Hsu, Yau-Heiu; Lo, Chia-Wen; Meng, Menghsiao |
2009 |
2009-07-05 |
PMC |
N |
PMC7134557 |
19443005.0 |
10.1016/j.virol.2009.04.013 |
k7ujru6t |
0.381268 |
Stork_2011, Volmer_2010, Li_Z_2010, Kang_2009, den_Boon_2010 |
Someya_2008, Piñón_1997 |
343 |
Milani_2009 |
Flaviviral methyltransferase/RNA interaction: Structural basis for enzyme inhibition |
Milani, Mario; Mastrangelo, Eloise; Bollati, Michela; Selisko, Barbara; Decroly, Etienne; Bouvet, Mickaël; Canard, Bruno; Bolognesi, Martino |
2009 |
2009-07-31 |
PMC |
N |
PMC7127253 |
19501254.0 |
10.1016/j.antiviral.2009.03.001 |
tf4jl47v |
0.380894 |
Stork_2011, Pong_2011, Kang_2009, Meyerson_2017, Gorbalenya_1988 |
Noble_2014, Deng_2019, Sun_D_2016 |
344 |
Aik_W_2017 |
The N-terminal domains of FLASH and Lsm11 form a 2:1 heterotrimer for histone pre-mRNA 3’-end processing |
Aik, Wei Shen; Lin, Min-Han; Tan, Dazhi; Tripathy, Ashutosh; Marzluff, William F.; Dominski, Zbigniew; Chou, Chi-Yuan; Tong, Liang |
2017 |
2017-10-11 |
COMM-USE |
N |
PMC5636114 |
29020104.0 |
10.1371/journal.pone.0186034 |
lg93okwg |
0.380250 |
Blank_2017, Hou_L_2014, Ivanova_2015, Sato_2019 |
Scrima_2004 |
345 |
Turk_2012 |
Cysteine cathepsins: From structure, function and regulation to new frontiers |
Turk, Vito; Stoka, Veronika; Vasiljeva, Olga; Renko, Miha; Sun, Tao; Turk, Boris; Turk, Dušan |
2012 |
2012-01-31 |
PMC |
N |
PMC7105208 |
22024571.0 |
10.1016/j.bbapap.2011.10.002 |
513go1km |
0.379344 |
Rytkönen_2007, Ivarsson_2012, Taschuk_2020, Berkhout_2006, Boggio_2006 |
Dana_2020, Buller_2012 |
346 |
Dzimianski_2019 |
Determining the molecular drivers of species-specific interferon-stimulated gene product 15 interactions with nairovirus ovarian tumor domain proteases |
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2019 |
2019-12-23 |
COMM-USE |
N |
PMC6927636 |
31869347.0 |
10.1371/journal.pone.0226415 |
ge7skngl |
0.378290 |
Rice_1992, Trobaugh_2017, Meyerson_2017, Wang_2018, Volmer_2010 |
Han_M_2014, Langley_2019 |
347 |
Morse_2015 |
Diversification of β-Augmentation Interactions between CDI Toxin/ Immunity Proteins |
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2015 |
2015-11-01 |
PMC |
N |
PMC4658667 |
26449640.0 |
10.1016/j.jmb.2015.09.020 |
jxrdp06o |
0.377746 |
Ivarsson_2012, Smith_2003, Gomis-Rüth_2003, Volmer_2010, UNKNOWN_1987 |
Michalska_2018, Li_W_2013, van_der_Linden_2014 |
348 |
Bhardwaj_2006 |
RNA Recognition and Cleavage by the SARS Coronavirus Endoribonuclease |
Bhardwaj, Kanchan; Sun, Jingchuan; Holzenburg, Andreas; Guarino, Linda A.; Kao, C. Cheng |
2006 |
2006-08-11 |
PMC |
Y |
PMC7118729 |
16828802.0 |
10.1016/j.jmb.2006.06.021 |
3lwrlyto |
0.377098 |
Stork_2011, Pong_2011, Gorbalenya_1988, Lin_X_2015, Yasuda-Inoue_2013 |
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349 |
Katritch_2007 |
Discovery of small molecule inhibitors of ubiquitin-like poxvirus proteinase I7L using homology modeling and covalent docking approaches |
Katritch, Vsevolod; Byrd, Chelsea M.; Tseitin, Vladimir; Dai, Dongcheng; Raush, Eugene; Totrov, Maxim; Abagyan, Ruben; Jordan, Robert; Hruby, Dennis E. |
2007 |
2007-10-25 |
PMC |
N |
PMC7087885 |
17960327.0 |
10.1007/s10822-007-9138-7 |
6l8m6n9f |
0.377098 |
Naito_2007, Ivarsson_2012, Qi_Z_2018, Chang_2011, Chan_2016 |
van_der_Linden_2014, Becker_2016, Wei_P_2006, Sun_D_2019 |
350 |
Lin_M_2014 |
Structural and functional characterization of MERS coronavirus papain-like protease |
Lin, Min-Han; Chuang, Shang-Ju; Chen, Chiao-Che; Cheng, Shu-Chun; Cheng, Kai-Wen; Lin, Chao-Hsiung; Sun, Chiao-Yin; Chou, Chi-Yuan |
2014 |
2014-06-04 |
COMM-USE |
N |
PMC4051379 |
24898546.0 |
10.1186/1423-0127-21-54 |
fb04slz0 |
0.377098 |
Pong_2011, Li_C_2013, Volmer_2010, Lu_P_2016, Hao_W_2017 |
Niemeyer_2018, Yu_L_2017 |
351 |
Tang_2020 |
Helicase of Type 2 Porcine Reproductive and Respiratory Syndrome Virus Strain HV Reveals a Unique Structure |
Tang, Chenjun; Deng, Zengqin; Li, Xiaorong; Yang, Meiting; Tian, Zizi; Chen, Zhenhang; Wang, Guoguo; Wu, Wei; Feng, Wen-hai; Zhang, Gongyi; Chen, Zhongzhou |
2020 |
2020-02-14 |
None |
N |
PMC7077220 |
32075207.0 |
10.3390/v12020215 |
i2dotk0k |
0.376406 |
Pong_2011, Hao_W_2017, Gorbalenya_1988, Yasuda-Inoue_2013 |
Jiang_2017 |
352 |
Someya_2005 |
Characterization of the norovirus 3C-like protease |
Someya, Yuichi; Takeda, Naokazu; Miyamura, Tatsuo |
2005 |
2005-06-30 |
PMC |
N |
PMC7114197 |
15845259.0 |
10.1016/j.virusres.2005.02.002 |
ij5yaqkx |
0.375493 |
Yang_2010, Saura_1999, Vaughan_2012, Someya_2008 |
Someya_2008, Piñón_1997, van_der_Linden_2014 |
353 |
Shi_X_2013 |
The Zinc-Finger Domain Was Essential for Porcine Reproductive and Respiratory Syndrome Virus Nonstructural Protein-1α to Inhibit the Production of Interferon-β |
Shi, Xibao; Zhang, Xiaozhuan; Wang, Fangyu; Wang, Li; Qiao, Songlin; Guo, Junqing; Luo, Chunhui; Wan, Bo; Deng, Ruiguang; Zhang, Gaiping |
2013 |
2013-06-01 |
PMC |
N |
PMC3665301 |
23428052.0 |
10.1089/jir.2012.0100 |
hl171olc |
0.375448 |
Ban_J_2018, Smith_2003, UNKNOWN_1987, Volmer_2010, Kang_2009 |
Jiang_2017, Ma_Z_2013 |
354 |
Joshi_2017 |
The Rational Design of Therapeutic Peptides for Aminopeptidase N using a Substrate-Based Approach |
Joshi, Shilvi; Chen, Lang; Winter, Michael B.; Lin, Yi-Lun; Yang, Yang; Shapovalova, Mariya; Smith, Paige M.; Liu, Chang; Li, Fang; LeBeau, Aaron M. |
2017 |
2017-05-02 |
COMM-USE |
N |
PMC5431086 |
28465619.0 |
10.1038/s41598-017-01542-5 |
0pmo3opx |
0.374135 |
Ivarsson_2012, Choudhury_2017, Naito_2007, Smith_2003, Blank_2017 |
van_der_Linden_2014, Wei_P_2006, Akaji_2008 |
355 |
Kanitz_2019 |
Structural basis for catalysis and substrate specificity of a 3C-like cysteine protease from a mosquito mesonivirus |
Kanitz, Manuel; Blanck, Sandra; Heine, Andreas; Gulyaeva, Anastasia A.; Gorbalenya, Alexander E.; Ziebuhr, John; Diederich, Wibke E. |
2019 |
2019-07-31 |
None |
N |
PMC7111312 |
31078932.0 |
10.1016/j.virol.2019.05.001 |
1ksfo0pr |
0.374135 |
Smith_2003, Sato_2019, Ivarsson_2012, UNKNOWN_1987, Pong_2011 |
Someya_2008, Zunszain_2010 |
356 |
Tan_W_2016 |
Structure of a Highly Active Cephalopod S-crystallin Mutant: New Molecular Evidence for Evolution from an Active Enzyme into Lens-Refractive Protein |
Tan, Wei-Hung; Cheng, Shu-Chun; Liu, Yu-Tung; Wu, Cheng-Guo; Lin, Min-Han; Chen, Chiao-Che; Lin, Chao-Hsiung; Chou, Chi-Yuan |
2016 |
2016-08-08 |
COMM-USE |
N |
PMC4976375 |
27499004.0 |
10.1038/srep31176 |
7bmmcrox |
0.373084 |
Choudhury_2017, Ivarsson_2012, Volmer_2010, Wang_2007, Dubois_2016 |
Someya_2008, Bielnicki_2005, Kanitz_2019 |
357 |
Wang_2015 |
The nonstructural protein 11 of porcine reproductive and respiratory syndrome virus inhibits NF-κB signaling by means of its deubiquitinating activity |
Wang, Dang; Fan, Jinxiu; Fang, Liurong; Luo, Rui; Ouyang, Haiping; Ouyang, Chao; Zhang, Huan; Chen, Huanchun; Li, Kui; Xiao, Shaobo |
2015 |
2015-12-31 |
PMC |
N |
PMC7112538 |
26342881.0 |
10.1016/j.molimm.2015.08.011 |
s0ypy2hf |
0.371886 |
Ban_J_2018, Meyerson_2017, Berkhout_2006, Volmer_2010, Yasuda-Inoue_2013 |
Jiang_2017, Ma_Z_2013 |
358 |
Durfee_2010 |
The ISG15 Conjugation System Broadly Targets Newly Synthesized Proteins: Implications for the Antiviral Function of ISG15 |
Durfee, Larissa A.; Lyon, Nancy; Seo, Kyungwoon; Huibregtse, Jon M. |
2010 |
2010-06-11 |
None |
N |
PMC2887317 |
20542004.0 |
10.1016/j.molcel.2010.05.002 |
af90ievf |
0.371226 |
Ban_J_2018, Meyerson_2017, Yasuda-Inoue_2013, Greene_2012, Choudhury_2017 |
Morales_2013, van_der_Linden_2014, Deng_2019 |
359 |
Wei_Z_2020 |
Aspartic acid at residue 185 modulates the capacity of HP-PRRSV nsp4 to antagonize IFN-I expression |
Wei, Ze-yu; Liu, Fang; Li, Yu; Wang, Hong-lei; Zhang, Zi-ding; Chen, Zhong-zhou; Feng, Wen-hai |
2020 |
2020-04-21 |
PMC |
N |
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10.1016/j.virol.2020.04.007 |
dc09yj4t |
0.371226 |
Yang_2010, Ban_J_2018, Freistadt_2007, Volmer_2010 |
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360 |
Makrynitsa_2019 |
Conformational plasticity of the VEEV macro domain is important for binding of ADP-ribose |
Makrynitsa, Garyfallia I.; Ntonti, Dioni; Marousis, Konstantinos D.; Birkou, Maria; Matsoukas, Minos-Timotheos; Asami, Sam; Bentrop, Detlef; Papageorgiou, Nicolas; Canard, Bruno; Coutard, Bruno; Spyroulias, Georgios A. |
2019 |
2019-04-01 |
PMC |
N |
PMC7111667 |
30825649.0 |
10.1016/j.jsb.2019.02.008 |
euf4sv76 |
0.369721 |
Pong_2011, Stork_2011, Volmer_2010, Gorbalenya_1988, den_Boon_2010 |
Hu_X_2016 |
361 |
Ghosh_2006 |
Progress in Anti-SARS Coronavirus Chemistry, Biology and Chemotherapy |
Ghosh, Arun K.; Xi, Kai; Johnson, Michael E.; Baker, Susan C.; Mesecar, Andrew D. |
2006 |
2006-12-31 |
PMC |
N |
PMC2718771 |
19649165.0 |
10.1016/s0065-7743(06)41011-3 |
1wae0134 |
0.369531 |
Meyerson_2017, Li_C_2017, Stork_2011, Rice_1992, Kang_2009 |
Niemeyer_2018, van_der_Linden_2014, Zhu_L_2011, Yamamoto_2004 |
362 |
Pang_2004 |
Three‐dimensional model of a substrate‐bound SARS chymotrypsin‐like cysteine proteinase predicted by multiple molecular dynamics simulations: Catalytic efficiency regulated by substrate binding |
Pang, Yuan‐Ping |
2004 |
2004-08-13 |
PMC |
N |
PMC7167676 |
15690493.0 |
10.1002/prot.20249 |
8m7a06g9 |
0.369071 |
Ivarsson_2012, UNKNOWN_1987, Smith_2003, Pong_2011, Gorbalenya_1988 |
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363 |
Hilgenfeld_2014 |
From SARS to MERS: crystallographic studies on coronaviral proteases enable antiviral drug design |
Hilgenfeld, Rolf |
2014 |
2014-08-11 |
PMC |
N |
PMC7163996 |
25039866.0 |
10.1111/febs.12936 |
ac6m1uwp |
0.368292 |
Walker_2010, Wiwanitkit_2014, UNKNOWN_2010, Lu_P_2016, Fauci_2006 |
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364 |
Bouvet_2010 |
In Vitro Reconstitution of SARS-Coronavirus mRNA Cap Methylation |
Bouvet, Mickaël; Debarnot, Claire; Imbert, Isabelle; Selisko, Barbara; Snijder, Eric J.; Canard, Bruno; Decroly, Etienne |
2010 |
2010-04-22 |
COMM-USE |
N |
PMC2858705 |
20421945.0 |
10.1371/journal.ppat.1000863 |
4bripmvh |
0.364641 |
Stork_2011, Yasuda-Inoue_2013, Pong_2011, Meyerson_2017, Kang_2009 |
Chen_2016 |
365 |
Chang_2012 |
Characterization and inhibition of norovirus proteases of genogroups I and II using a fluorescence resonance energy transfer assay |
Chang, Kyeong-Ok; Takahashi, Daisuke; Prakash, Om; Kim, Yunjeong |
2012 |
2012-02-20 |
PMC |
N |
PMC3259199 |
22200497.0 |
10.1016/j.virol.2011.12.002 |
g1ie0ahz |
0.363988 |
Tallmadge_2008, Ryu_W_2017, Lu_P_2016, Rice_1992, Crowe_2014 |
van_der_Linden_2014 |
366 |
Lee_Y_2017 |
Crystal structure of the catalytic domain of Clostridium perfringens neuraminidase in complex with a non-carbohydrate-based inhibitor, 2-(cyclohexylamino)ethanesulfonic acid |
Lee, Youngjin; Youn, Hyung-Seop; Lee, Jung-Gyu; An, Jun Yop; Park, Kyoung Ryoung; Kang, Jung Youn; Ryu, Young Bae; Jin, Mi Sun; Park, Ki Hun; Eom, Soo Hyun |
2017 |
2017-04-29 |
PMC |
N |
PMC7092837 |
28315686.0 |
10.1016/j.bbrc.2017.03.064 |
9yaarxhs |
0.362401 |
Yang_2010, Ivarsson_2012, Pong_2011, Yang_2012, Smith_2003 |
Grazioso_2012, Someya_2008, Kanitz_2019, Yin_J_2005 |
367 |
Tian_2011 |
Characterization of Selective Ubiquitin and Ubiquitin-Like Protease Inhibitors Using a Fluorescence-Based Multiplex Assay Format |
Tian, Xufan; Isamiddinova, Nigora S.; Peroutka, Raymond J.; Goldenberg, Seth J.; Mattern, Michael R.; Nicholson, Benjamin; Leach, Craig |
2011 |
2011-04-01 |
PMC |
N |
PMC3065724 |
21133675.0 |
10.1089/adt.2010.0317 |
gf9c8vf3 |
0.361835 |
Choudhury_2017, Berkhout_2006, Blank_2017, Ivarsson_2012, Lindner_2007 |
Kramer_2012, van_der_Linden_2014 |
368 |
Damalanka_2016 |
Oxadiazole-Based Cell Permeable Macrocyclic Transition State Inhibitors of Norovirus 3CL Protease |
Damalanka, Vishnu C.; Kim, Yunjeong; Alliston, Kevin R.; Weerawarna, Pathum M.; Galasiti Kankanamalage, Anushka C.; Lushington, Gerald H.; Mehzabeen, Nurjahan; Battaile, Kevin P.; Lovell, Scott; Chang, Kyeong-Ok; Groutas, William C. |
2016 |
2016-02-08 |
PMC |
N |
PMC5156532 |
26823007.0 |
10.1021/acs.jmedchem.5b01464 |
aycioxsc |
0.361645 |
Tallmadge_2008, Brucker_2020, Lu_P_2016, Rice_1992, Potgieter_1986 |
Im_I_2009, Galasiti_Kankanamalage_2018, Kuo_C_2008 |
369 |
Artavanis‐Tsakonas_2006 |
Identification by functional proteomics of a deubiquitinating/deNeddylating enzyme in Plasmodium falciparum |
Artavanis‐Tsakonas, Katerina; Misaghi, Shahram; Comeaux, Christy A.; Catic, Andre; Spooner, Eric; Duraisingh, Manoj T.; Ploegh, Hidde L. |
2006 |
2006-08-02 |
PMC |
N |
PMC7168409 |
16925553.0 |
10.1111/j.1365-2958.2006.05307.x |
4wjuuage |
0.360912 |
Choudhury_2017, Berkhout_2006, Taschuk_2020, Haasnoot_2010, Volmer_2010 |
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370 |
Guo_X_2008 |
Cleavage mechanism of the H5N1 hemagglutinin by trypsin and furin |
Guo, X.-L.; Li, L.; Wei, D.-Q.; Zhu, Y.-S.; Chou, K.-C. |
2008 |
2008-01-31 |
PMC |
N |
PMC7088033 |
18235997.0 |
10.1007/s00726-007-0611-3 |
o3co0l8u |
0.360307 |
Volmer_2010, Pong_2011, Yang_2010, Yasui_2016, Hu_W_2013 |
van_der_Linden_2014, Someya_2008 |
371 |
Walter_2006 |
Lysine Methylation as a Routine Rescue Strategy for Protein Crystallization |
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2006 |
2006-11-30 |
PMC |
N |
PMC7126202 |
17098187.0 |
10.1016/j.str.2006.09.005 |
7ar7tzfn |
0.359466 |
Kirillova_2009, Qi_Z_2018, Chang_2011, Liu_Z_2008, Dawson_2007 |
Renzi_2006, Someya_2008, Buller_2012 |
372 |
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Inhibition of the severe acute respiratory syndrome 3CL protease by peptidomimetic α,β-unsaturated esters |
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2005 |
2005-09-01 |
PMC |
N |
PMC7119063 |
15994085.0 |
10.1016/j.bmc.2005.05.065 |
9fiqf6lk |
0.359112 |
Ramajayam_2010, Yang_2010, Vaughan_2012, Kuang_2005, Lu_Y_1997 |
Grazioso_2012, Kuo_C_2008, Akaji_2008, van_der_Linden_2014 |
373 |
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Monitoring Target Engagement of Deubiquitylating Enzymes Using Activity Probes: Past, Present, and Future |
Harrigan, Jeanine; Jacq, Xavier |
2016 |
2016-09-10 |
PMC |
N |
PMC7120244 |
27613052.0 |
10.1007/978-1-4939-3756-1_26 |
01iom9al |
0.358034 |
Berkhout_2006, Haasnoot_2010, Trobaugh_2017, Rytkönen_2007, Choudhury_2017 |
Deng_2019, Kramer_2012 |
374 |
Deng_2013 |
Structural basis for the regulatory function of a complex zinc-binding domain in a replicative arterivirus helicase resembling a nonsense-mediated mRNA decay helicase |
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2013 |
2013-12-24 |
NONCOMM |
N |
PMC3950703 |
24369429.0 |
10.1093/nar/gkt1310 |
471zei5o |
0.356853 |
Gorbalenya_1988, Yasuda-Inoue_2013, Pong_2011, Stork_2011, Hao_W_2017 |
Xia_H_2015, Kanitz_2019 |
375 |
Aeksiri_2017 |
Structural insights into type I and type II of nsp4 porcine reproductive and respiratory syndrome virus (nsp4 PRRSV) by molecular dynamics simulations |
Aeksiri, Niran; Jantafong, Tippawan |
2017 |
2017-06-30 |
PMC |
N |
PMC7110526 |
28411461.0 |
10.1016/j.jmgm.2017.03.015 |
wsd30c6f |
0.355960 |
Smith_2003, Yang_2012, Callison_1999, UNKNOWN_1987, Ivarsson_2012 |
Jiang_2017, Xu_L_2018 |
376 |
Edelmann_2008 |
Ubiquitin and ubiquitin-like specific proteases targeted by infectious pathogens: Emerging patterns and molecular principles |
Edelmann, Mariola J.; Kessler, Benedikt M. |
2008 |
2008-12-31 |
PMC |
N |
PMC7126189 |
18817868.0 |
10.1016/j.bbadis.2008.08.010 |
3zwe6u8w |
0.355496 |
Taschuk_2020, Berkhout_2006, Viswanathan_2010, Wilson_2012, Klein_2011 |
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Virtual High-Throughput Screening Identifies Mycophenolic Acid as a Novel RNA Capping Inhibitor |
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COMM-USE |
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PMC3174198 |
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Stork_2011, Blank_2017, Kang_2009, Pong_2011, Gorbalenya_1988 |
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2019 |
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PMC6650548 |
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Meyerson_2017, Rice_1992, Stork_2011, Ban_J_2018, Yasuda-Inoue_2013 |
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NONCOMM |
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PMC4487406 |
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Berkhout_2006, Haasnoot_2010, Moon_2012, Abernathy_2015, Tessier_2019 |
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PMC3957432 |
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10.1016/j.virol.2013.11.040 |
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Ban_J_2018, Wang_2010, Dixit_2013, Meyerson_2017 |
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PMC4844956 |
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Intracellular Mono-ADP-Ribosylation in Signaling and Disease |
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PMC4695847 |
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10.3390/cells4040569 |
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Rytkönen_2007, Taschuk_2020, Blank_2017, El_Motiam_2019, Bailey-Elkin_2017 |
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PMC |
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PMC7112070 |
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10.1016/j.virol.2014.07.037 |
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Stork_2011, Pong_2011, Yasuda-Inoue_2013, Meyerson_2017, Kang_2009 |
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Ubiquitin-Specific Proteases 25 Negatively Regulates Virus-Induced Type I Interferon Signaling |
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COMM-USE |
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PMC3832446 |
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10.1371/journal.pone.0080976 |
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Ban_J_2018, Blank_2017, Siu_Y_2008, Greene_2012 |
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The Promise of Proteomics for the Study of ADP-Ribosylation |
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PMC4486045 |
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10.1016/j.molcel.2015.06.012 |
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Rytkönen_2007, Haasnoot_2010, Taschuk_2020, Boggio_2006, Berkhout_2006 |
Bütepage_2015, Jankevicius_2013, Feijs_2020 |
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COMM-USE |
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PMC3317743 |
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10.3390/ijms13033782 |
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Assessing activity of Hepatitis A virus 3C protease using a cyclized luciferase-based biosensor |
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PMC7092888 |
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10.1016/j.bbrc.2017.05.063 |
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Pong_2011, Kang_2009, Meyerson_2017, Stork_2011, Tallmadge_2008 |
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Diederich_2009 |
Nipah virus fusion protein: Influence of cleavage site mutations on the cleavability by cathepsin L, trypsin and furin |
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2009-11-30 |
PMC |
N |
PMC7126315 |
19665506.0 |
10.1016/j.virusres.2009.07.020 |
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Volmer_2010, Yang_2010, Meyerson_2017, Pong_2011 |
Weis_2015 |
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Robust substrate profiling method reveals striking differences in specificities of serum and lung fluid proteases |
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2011-08-01 |
PMC |
N |
PMC3159512 |
21806553.0 |
10.2144/000113717 |
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Naito_2007, Ivarsson_2012, Chan_2016, Antalis_2010 |
van_der_Linden_2014, Xue_G_2013, Chen_2015, Kuo_C_2004 |
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Multiple functions of USP18 |
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PMC |
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PMC5260889 |
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10.1038/cddis.2016.326 |
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Choudhury_2017, Berkhout_2006, Martín-Vicente_2017, Taschuk_2020, Haasnoot_2010 |
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The SARS-coronavirus nsp7+nsp8 complex is a unique multimeric RNA polymerase capable of both de novo initiation and primer extension |
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NONCOMM |
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PMC3287201 |
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10.1093/nar/gkr893 |
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Stork_2011, Pong_2011, Kang_2009, Meyerson_2017, Yasuda-Inoue_2013 |
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Crystallization and preliminary crystallographic analysis of the fusion core of the spike protein of the murine coronavirus mouse hepatitis virus (MHV) |
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PMC |
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PMC7161579 |
15502312.0 |
10.1107/s0907444904020517 |
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Zhao_2011, Jendrach_2014, Callison_1999, Willcocks_1993, Bastien_2003 |
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Inhibitors of Deubiquitinating Enzymes Block HIV-1 Replication and Augment the Presentation of Gag-Derived MHC-I Epitopes |
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COMM-USE |
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PMC5580479 |
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Meyerson_2017, Ban_J_2018, Greene_2012, Yasuda-Inoue_2013, Berkhout_2006 |
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Consecutive Inhibition of ISG15 Expression and ISGylation by Cytomegalovirus Regulators |
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COMM-USE |
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PMC5001722 |
27564865.0 |
10.1371/journal.ppat.1005850 |
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Ban_J_2018, Meyerson_2017, Yasuda-Inoue_2013, Greene_2012, Li_C_2017 |
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Structure of interferon-stimulated gene product 15 (ISG15) from the bat species Myotis davidii and the impact of interdomain ISG15 interactions on viral protein engagement |
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PMC |
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PMC6333284 |
30644842.0 |
10.1107/s2059798318015322 |
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Berkhout_2006, Haasnoot_2010, Taschuk_2020, Trobaugh_2017, Herbert_2016 |
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Structural Basis for the dsRNA Specificity of the Lassa Virus NP Exonuclease |
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COMM-USE |
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PMC3429428 |
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10.1371/journal.pone.0044211 |
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PMC7127348 |
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10.1016/j.bmc.2019.115273 |
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Schlieker_2007, Smith_2003, Sato_2019, Wang_2014 |
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Potent inhibition of feline coronaviruses with peptidyl compounds targeting coronavirus 3C-like protease |
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PMC3563934 |
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10.1016/j.antiviral.2012.11.005 |
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Tallmadge_2008, Lu_P_2016, Ryu_W_2017, Crowe_2014, Yasui_2016 |
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PMC |
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PMC7111981 |
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10.1016/j.virol.2013.06.014 |
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PMC7162187 |
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10.1002/cmdc.201000449 |
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Choudhury_2011, Abou-Hamdan_2018, David_2013, Largo_2016 |
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Heparin enhances the furin cleavage of HIV-1 gp160 peptides |
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PMC |
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PMC7125586 |
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10.1016/j.febslet.2007.11.050 |
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Pong_2011, Stork_2011, Morikawa_1992, Hou_L_2014, UNKNOWN_1987 |
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PMC7102789 |
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10.1016/j.coviro.2017.03.018 |
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PMC3726583 |
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10.1016/j.mam.2013.02.002 |
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Taschuk_2020, Rytkönen_2007, Dubois_2016, Trobaugh_2017 |
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Biochemical and Genetic Analyses of Murine Hepatitis Virus Nsp15 Endoribonuclease |
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2007-09-26 |
None |
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PMC2168834 |
17898055.0 |
10.1128/jvi.00547-07 |
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Volmer_2010, Rice_1992, Stork_2011, Kang_2009, Meyerson_2017 |
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Membrane topology of murine coronavirus replicase nonstructural protein 3 |
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PMC |
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PMC1925034 |
17222884.0 |
10.1016/j.virol.2006.12.009 |
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UNKNOWN_1987, UNKNOWN_1993, Pong_2011, Gomis-Rüth_2003 |
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Ubiquitin-specific Protease 15 Negatively Regulates Virus-induced Type I Interferon Signaling via Catalytically-dependent and -independent Mechanisms |
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COMM-USE |
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PMC4650652 |
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PMC7105183 |
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Information available at cut rates: structure and mechanism of ribonucleases |
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PMC7125677 |
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10.1016/j.sbi.2006.12.001 |
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Sequence–function analysis of the Sendai virus L protein domain VI |
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PMC2923248 |
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10.1016/j.virol.2010.06.019 |
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Gorbalenya_1988, Stork_2011, Pong_2011, Kang_2009, Rice_1992 |
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PMC7087866 |
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10.1007/bf00284481 |
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Krause_1987, Wang_2007, Callison_1999, UNKNOWN_1987, Gorbalenya_1988 |
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A Review of Small Molecule Inhibitors and Functional Probes of Human Cathepsin L |
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Poxvirus Exploitation of the Ubiquitin-Proteasome System |
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COMM-USE |
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PMC3185573 |
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Taschuk_2020, Choudhury_2017, Bailey-Elkin_2017, Klein_2011 |
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Interferon-induced ISG15 pathway: an ongoing virus–host battle |
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PMC3622817 |
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10.1016/j.tim.2013.01.005 |
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Ban_J_2018, Meyerson_2017, Berkhout_2006, Volmer_2010, Rice_1992 |
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A model of tripeptidyl-peptidase I (CLN2), a ubiquitous and highly conserved member of the sedolisin family of serine-carboxyl peptidases |
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PMC280685 |
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10.1186/1472-6807-3-8 |
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PMC7130731 |
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10.1006/viro.1997.8503 |
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UNKNOWN_1987, UNKNOWN_1993, Yang_2010, Chang_2000 |
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Mutational Analysis of the SARS Virus Nsp15 Endoribonuclease: Identification of Residues Affecting Hexamer Formation |
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PMC |
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PMC7094243 |
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10.1016/j.jmb.2005.09.007 |
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Stork_2011, Gomis-Rüth_2003, Pong_2011, UNKNOWN_1987, Diaz_2011 |
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PMC4036818 |
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10.1016/j.virusres.2007.02.015 |
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Naito_2007, Pong_2011, Berkhout_2006, Stork_2011, Rice_1992 |
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Synthetic studies towards anti-SARS agents: application of an indium-mediated allylation of α-aminoaldehydes as the key step towards an intermediate |
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PMC7119068 |
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Screening of electrophilic compounds yields an aziridinyl peptide as new active-site directed SARS-CoV main protease inhibitor |
Martina, Erika; Stiefl, Nikolaus; Degel, Björn; Schulz, Franziska; Breuning, Alexander; Schiller, Markus; Vicik, Radim; Baumann, Knut; Ziebuhr, John; Schirmeister, Tanja |
2005 |
2005-12-15 |
PMC |
N |
PMC7127417 |
16216498.0 |
10.1016/j.bmcl.2005.09.012 |
lij14ztt |
0.300686 |
Naito_2007, Anderson_2009, Laporte_2017, Berkhout_2006, Lu_P_2016 |
Zhu_L_2011, Grazioso_2012, Pérez-Faginas_2011, Niu_C_2008 |
465 |
Vey_M_1992 |
Hemagglutinin activation of pathogenic avian influenza viruses of serotype H7 requires the protease recognition motif R-X-K/R-R |
Vey, Martin; Orlich, Michaela; Adler, Sabine; Klenk, Hans-Dieter; Rott, Rudolf; Garten, Wolfgang |
1992 |
1992-05-31 |
PMC |
N |
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1566583.0 |
10.1016/0042-6822(92)90775-k |
g9qmmugg |
0.300686 |
Tallmadge_2008, Yasui_2016, Volmer_2010, Yang_2010 |
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466 |
Konno_2016 |
Design and synthesis of a series of serine derivatives as small molecule inhibitors of the SARS coronavirus 3CL protease |
Konno, Hiroyuki; Wakabayashi, Masaki; Takanuma, Daiki; Saito, Yota; Akaji, Kenichi |
2016 |
2016-03-15 |
PMC |
N |
PMC7111485 |
26879854.0 |
10.1016/j.bmc.2016.01.052 |
9bw1z5ps |
0.300571 |
Ramajayam_2010, Regnier_2009, Ramajayam_2010, Kuang_2005 |
Dude_2008, Im_I_2009, Ramajayam_2010, Chen_2005 |
467 |
García_1999 |
Proteinases Involved in Plant Virus Genome Expression |
García, Juan Antonio; Fernández-Fernández, María Rosario; López-Moya, Juan José |
1999 |
1999-12-31 |
PMC |
N |
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10.1016/b978-012420510-9/50037-5 |
g72cq0ys |
0.300343 |
Rice_1992, Trobaugh_2017, Berkhout_2006, Herbert_2016 |
van_der_Linden_2014, Rott_1987, Sun_D_2016 |