Topic 12 -- Abstracts with Biological Entities (English) - 75 Topics

cite ad title authors publish year publish time dataset abstract mentions covid pmcid pubmed id doi cord uid topic weight Similarity scispacy Similarity specter
1 Miller_2008 Modification of intracellular membrane structures for virus replication Miller, Sven; Krijnse-Locker, Jacomine 2008 2008-01-01 PMC N PMC7096853 18414501.0 10.1038/nrmicro1890 686fxpum 0.953955 den_Boon_2010, Rice_1992, Denison_2008, Weissenhorn_2013 Villanueva_2005, Netherton_2007, Wulan_2015, Giorda_2013
2 Jakubiec_2007 Regulation of positive-strand RNA virus replication: The emerging role of phosphorylation Jakubiec, Anna; Jupin, Isabelle 2007 2007-11-30 PMC N PMC7132427 17764774.0 10.1016/j.virusres.2007.07.012 sxeu332u 0.949986 Trobaugh_2017, Yasuda-Inoue_2013, den_Boon_2010, Meyerson_2017 Diaz_2012, Gopinath_2015, Zhang_2015
3 den_Boon_2010 Cytoplasmic Viral Replication Complexes den Boon, Johan A.; Diaz, Arturo; Ahlquist, Paul 2010 2010-07-22 None N PMC2921950 20638644.0 10.1016/j.chom.2010.06.010 2yl5qwsn 0.943456 Rice_1992, Stork_2011, Yasuda-Inoue_2013, Li_Z_2010 Diaz_2012, Wulan_2015, Harak_2015
4 Nagy_2011 The dependence of viral RNA replication on co-opted host factors Nagy, Peter D.; Pogany, Judit 2011 2011-12-19 PMC N PMC7097227 22183253.0 10.1038/nrmicro2692 adc3a8u7 0.942334 den_Boon_2010, Rice_1992, Trobaugh_2017, Li_Z_2011 Diaz_2012, Wulan_2015, Neufeldt_2016
5 Pérez-González_2014 hCLE/C14orf166 Associates with DDX1-HSPC117-FAM98B in a Novel Transcription-Dependent Shuttling RNA-Transporting Complex Pérez-González, Alicia; Pazo, Alejandra; Navajas, Rosana; Ciordia, Sergio; Rodriguez-Frandsen, Ariel; Nieto, Amelia 2014 2014-03-07 COMM-USE N PMC3946611 24608264.0 10.1371/journal.pone.0090957 i4riotht 0.914145 Blank_2017, Yasuda-Inoue_2013, Shi_S_2000, UNKNOWN_1995 Han_M_2008, Shi_S_2000, Zhang_2015
6 Li_Z_2011 Diverse roles of host RNA-binding proteins in RNA virus replication Li, Zhenghe; Nagy, Peter D 2011 2011-03-01 PMC N PMC3230553 21505273.0 10.4161/rna.8.2.15391 iu3dg7y1 0.912067 Taschuk_2020, Yasuda-Inoue_2013, den_Boon_2010, Rice_1992 Li_Z_2009, Bhullar_2014
7 Poblete-Durán_2016 Who Regulates Whom? An Overview of RNA Granules and Viral Infections Poblete-Durán, Natalia; Prades-Pérez, Yara; Vera-Otarola, Jorge; Soto-Rifo, Ricardo; Valiente-Echeverría, Fernando 2016 2016-06-28 COMM-USE N PMC4974515 27367717.0 10.3390/v8070180 w4puwpat 0.902756 Herbert_2016, den_Boon_2010, Tsai_2014, Yasuda-Inoue_2013, Trobaugh_2017 Montero_2011, Tsai_2014, Zhang_2019
8 Gao_X_2010 Tudor-SN interacts with and co-localizes with G3BP in stress granules under stress conditions Gao, Xingjie; Ge, Lin; Shao, Jie; Su, Chao; Zhao, Hong; Saarikettu, Juha; Yao, Xuyang; Yao, Zhi; Silvennoinen, Olli; Yang, Jie 2010 2010-08-20 PMC N PMC7127458 20643132.0 10.1016/j.febslet.2010.07.022 2inmn7lb 0.899959 Blank_2017, UNKNOWN_1995, Yasuda-Inoue_2013, Greene_2012, Volmer_2010 Fitzgerald_2013, Aulas_2015, Jayabalan_2019
9 Belov_2012 (+)RNA viruses rewire cellular pathways to build replication organelles Belov, George A; van Kuppeveld, Frank JM 2012 2012-12-31 PMC N PMC7102821 23036609.0 10.1016/j.coviro.2012.09.006 g1muealp 0.896456 den_Boon_2010, Trobaugh_2017, Taschuk_2020, Berkhout_2006 Diaz_2012, Harak_2015
10 Tessier_2019 Viral Appropriation: Laying Claim to Host Nuclear Transport Machinery Tessier, Tanner M.; Dodge, Mackenzie J.; Prusinkiewicz, Martin A.; Mymryk, Joe S. 2019 2019-06-08 COMM-USE N PMC6627039 31181773.0 10.3390/cells8060559 rg45m42j 0.894629 Weissenhorn_2013, Trobaugh_2017, Taschuk_2020, Yarbrough_2013 Fulcher_2011, Yarbrough_2013, Bonamassa_2015, Neufeldt_2016
11 Lloyd_2013 Regulation of Stress Granules and P-Bodies During RNA Virus Infection Lloyd, Richard E. 2013 2013-04-03 None N PMC3652661 23554219.0 10.1002/wrna.1162 fmkcvhkh 0.892748 den_Boon_2010, Yasuda-Inoue_2013, Tsai_2014, Trobaugh_2017, Herbert_2016 Tsai_2014, Zhang_2019, Reineke_2013
12 Walsh_2011 Viral subversion of the host protein synthesis machinery Walsh, Derek; Mohr, Ian 2011 2011-10-17 PMC N PMC7097311 22002165.0 10.1038/nrmicro2655 0oikpvwo 0.890059 Herbert_2016, Gaucherand_2019, Trobaugh_2017, Berkhout_2006 Roberts_2009, Gaucherand_2019, Guerrero_2015
13 Netherton_2011 Virus factories, double membrane vesicles and viroplasm generated in animal cells Netherton, Christopher L; Wileman, Tom 2011 2011-11-30 PMC N PMC7102809 22440839.0 10.1016/j.coviro.2011.09.008 9mertwj7 0.874604 den_Boon_2010, Weissenhorn_2013, Rice_1992, Li_Z_2011 Diaz_2012, Wulan_2015, Harak_2015
14 Denison_2008 Seeking Membranes: Positive-Strand RNA Virus Replication Complexes Denison, Mark R 2008 2008-10-28 COMM-USE N PMC2573941 18959488.0 10.1371/journal.pbio.0060270 qdy29oym 0.872908 Mooney_2013, Mack_2007, Looker_2006, UNKNOWN_2004 Sasvari_2010, Diaz_2012
15 Harak_2015 Ultrastructure of the replication sites of positive-strand RNA viruses Harak, Christian; Lohmann, Volker 2015 2015-05-31 PMC N PMC7111692 25746936.0 10.1016/j.virol.2015.02.029 zgyfwowq 0.859522 den_Boon_2010, Trobaugh_2017, Denison_2008, Kindler_2014, Weissenhorn_2013 Diaz_2012, Wulan_2015
16 Choi_2012 The ubiquitin‐proteasome system in positive‐strand RNA virus infection Choi, Alex GoEun; Wong, Jerry; Marchant, David; Luo, Honglin 2012 2012-07-11 PMC N PMC7169083 22782620.0 10.1002/rmv.1725 8mon7mz3 0.856689 Berkhout_2006, Shi_J_2012, Trobaugh_2017, Taschuk_2020, Klein_2011
17 Chiramel_2013 Divergent Roles of Autophagy in Virus Infection Chiramel, Abhilash I.; Brady, Nathan R.; Bartenschlager, Ralf 2013 2013-01-25 COMM-USE N PMC3972664 24709646.0 10.3390/cells2010083 1oawya1p 0.852122 Lester_2014, Shi_J_2012, Kim_S_2018, Mao_J_2019 Espert_2007, Cheng_2014, Lee_H_2008, Sir_D_2010
18 Lloyd_2015 Nuclear proteins hijacked by mammalian cytoplasmic plus strand RNA viruses Lloyd, Richard E. 2015 2015-05-31 PMC N PMC4426963 25818028.0 10.1016/j.virol.2015.03.001 ca2xxkb2 0.849907 den_Boon_2010, Rice_1992, Trobaugh_2017, Li_Z_2011 Wulan_2015, Diaz_2012, Bhullar_2014
19 Novoa_2012 Virus factories: associations of cell organelles for viral replication and morphogenesis Novoa, Reyes R.; Calderita, Gloria; Arranz, Rocío; Fontana, Juan; Granzow, Harald; Risco, Cristina 2012 2012-01-09 PMC N PMC7161905 15656780.0 10.1042/bc20040058 fte7h7mf 0.841219 den_Boon_2010, Weissenhorn_2013, Dubois_2016, Hobman_1993, Hurley_2014
20 Mu_J_2016 Autographa californica Multiple Nucleopolyhedrovirus Ac34 Protein Retains Cellular Actin-Related Protein 2/3 Complex in the Nucleus by Subversion of CRM1-Dependent Nuclear Export Mu, Jingfang; Zhang, Yongli; Hu, Yangyang; Hu, Xue; Zhou, Yuan; Zhao, He; Pei, Rongjuan; Wu, Chunchen; Chen, Jizheng; Zhao, Han; Yang, Kai; van Oers, Monique M.; Chen, Xinwen; Wang, Yun 2016 2016-11-01 COMM-USE N PMC5089780 27802336.0 10.1371/journal.ppat.1005994 fyxlphqz 0.840485 Greene_2012, UNKNOWN_1995, Hurley_2014, Blank_2017 Wulan_2015
21 Seissler_2017 Hijacking of the Ubiquitin/Proteasome Pathway by the HIV Auxiliary Proteins Seissler, Tanja; Marquet, Roland; Paillart, Jean-Christophe 2017 2017-10-31 COMM-USE N PMC5707529 29088112.0 10.3390/v9110322 whfyczcj 0.836993 Shi_J_2012, Trobaugh_2017, Berkhout_2006, Klein_2011, Viswanathan_2010 Setz_2017, van_Tol_2017, Sun_D_2016
22 Gaucherand_2019 The Influenza A Virus Endoribonuclease PA-X Usurps Host mRNA Processing Machinery to Limit Host Gene Expression Gaucherand, Lea; Porter, Brittany K.; Levene, Rachel E.; Price, Emma L.; Schmaling, Summer K.; Rycroft, Chris H.; Kevorkian, Yuzo; McCormick, Craig; Khaperskyy, Denys A.; Gaglia, Marta M. 2019 2019-04-16 None N PMC6499400 30995476.0 10.1016/j.celrep.2019.03.063 99tyhwqe 0.835836 Rice_1992, Trobaugh_2017, Herbert_2016, den_Boon_2010 Gaucherand_2018, Case_2017, Neufeldt_2016
23 Arakawa_2019 Flavivirus Replication Organelle Biogenesis in the Endoplasmic Reticulum: Comparison with Other Single-Stranded Positive-Sense RNA Viruses Arakawa, Masashi; Morita, Eiji 2019 2019-05-11 COMM-USE N PMC6539296 31083507.0 10.3390/ijms20092336 hina8545 0.832535 den_Boon_2010, Weissenhorn_2013, Hobman_1993, Hagemeijer_2012, Volmer_2010 Wulan_2015, Diaz_2012, Neufeldt_2016
24 Zakaryan_2011 Nuclear remodelling during viral infections Zakaryan, H.; Stamminger, T. 2011 2011-04-28 PMC N PMC7162193 21501365.0 10.1111/j.1462-5822.2011.01596.x q24jycgk 0.832265 Berkhout_2006, Klein_2011, Taschuk_2020, den_Boon_2010
25 Heaton_2011 Multifaceted roles for lipids in viral infection Heaton, Nicholas S.; Randall, Glenn 2011 2011-07-31 None N PMC3130080 21530270.0 10.1016/j.tim.2011.03.007 xvl9i86c 0.824228 Shi_J_2012, Lester_2014, Berkhout_2006, Kim_S_2018 Watanabe_2019, Chiramel_2013, Chan_2010, Sze_C_2015
26 Sasvari_2010 Making of Viral Replication Organelles by Remodeling Interior Membranes Sasvari, Zsuzsanna; Nagy, Peter D. 2010 2010-11-05 COMM-USE N PMC3185585 21994625.0 10.3390/v2112436 477utyfm 0.824037 den_Boon_2010, Weissenhorn_2013, Rice_1992, Trobaugh_2017, Stork_2011 Diaz_2012, Harak_2015, Wulan_2015
27 Hiscox_2003 The interaction of animal cytoplasmic RNA viruses with the nucleus to facilitate replication Hiscox, Julian A. 2003 2003-09-30 PMC N PMC7125749 12921992.0 10.1016/s0168-1702(03)00160-6 vaddp7qk 0.823808 den_Boon_2010, Yasuda-Inoue_2013, Volmer_2010, Trobaugh_2017 Wulan_2015, Bhullar_2014
28 Hagemeijer_2012 Biogenesis and Dynamics of the Coronavirus Replicative Structures Hagemeijer, Marne C.; Rottier, Peter J.M.; de Haan, Cornelis A.M. 2012 2012-11-21 COMM-USE N PMC3509692 23202524.0 10.3390/v4113245 v5kpmk0b 0.822675 den_Boon_2010, Rice_1992, Stork_2011, Yasuda-Inoue_2013 Wulan_2015, Diaz_2012
29 Sasaki_2011 ACBD3-mediated recruitment of PI4KB to picornavirus RNA replication sites Sasaki, Jun; Ishikawa, Kumiko; Arita, Minetaro; Taniguchi, Koki 2011 2011-11-29 PMC N PMC3273392 22124328.0 10.1038/emboj.2011.429 e1fex82s 0.822404 Yasuda-Inoue_2013, Meyerson_2017, Stork_2011, Li_C_2013, Liu_H_2009 Sun_D_2016, Yan_J_2020
30 V'kovski_2019 Determination of host proteins composing the microenvironment of coronavirus replicase complexes by proximity-labeling V'kovski, Philip; Gerber, Markus; Kelly, Jenna; Pfaender, Stephanie; Ebert, Nadine; Braga Lagache, Sophie; Simillion, Cedric; Portmann, Jasmine; Stalder, Hanspeter; Gaschen, Véronique; Bruggmann, Rémy; Stoffel, Michael H; Heller, Manfred; Dijkman, Ronald; Thiel, Volker 2019 2019-01-11 COMM-USE N PMC6372286 30632963.0 10.7554/elife.42037 dfqmih8r 0.822233 Trobaugh_2017, den_Boon_2010, Gaucherand_2019, Rice_1992, Yasuda-Inoue_2013 Philip_2018, Neufeldt_2016, Zhang_2015
31 Diaz_2012 Role of host reticulon proteins in rearranging membranes for positive-strand RNA virus replication Diaz, Arturo; Ahlquist, Paul 2012 2012-08-31 None N PMC3670673 22621853.0 10.1016/j.mib.2012.04.007 f32rcce3 0.821237 den_Boon_2010, Rice_1992, Trobaugh_2017, Li_Z_2011 Wulan_2015, Harak_2015
32 van_der_Schaar_2016 Fat(al) attraction: Picornaviruses Usurp Lipid Transfer at Membrane Contact Sites to Create Replication Organelles van der Schaar, Hilde M.; Dorobantu, Cristina M.; Albulescu, Lucian; Strating, Jeroen R.P.M.; van Kuppeveld, Frank J.M. 2016 2016-07-31 PMC N PMC7126954 27020598.0 10.1016/j.tim.2016.02.017 ylnb6qfl 0.820106 den_Boon_2010, Rice_1992, Trobaugh_2017, Payne_2017, Weissenhorn_2013 Neufeldt_2016, Sun_D_2016, Zhang_2015
33 Altan-Bonnet_2012 Phosphatidylinositol 4-kinases: hostages harnessed to build panviral replication platforms Altan-Bonnet, Nihal; Balla, Tamas 2012 2012-07-31 None N PMC3389303 22633842.0 10.1016/j.tibs.2012.03.004 vs7k9rg1 0.814528 Clayton_2013, Meyerson_2017, Kumar_2016, Weissenhorn_2013 Watanabe_2019, Sun_D_2016, Silverman_2014
34 Philip_2018 Determination of host cell proteins constituting the molecular microenvironment of coronavirus replicase complexes by proximity-labeling V’kovski Philip; Gerber Markus; Kelly Jenna; Pfaender Stephanie; Ebert Nadine; Braga Lagache Sophie; Simillion Cedric; Portmann Jasmine; Stalder Hanspeter; Gaschen Véronique; Bruggmann Remy; Stoffel Michael; Heller Manfred; Dijkman Ronald; Thiel Volker 2018 2018-09-14 BioRxiv N 10.1101/417907 jgrilsfc 0.811616 Trobaugh_2017, den_Boon_2010, Gaucherand_2019, Rice_1992, Yasuda-Inoue_2013 V'kovski_2019, Neufeldt_2016, Zhang_2015
35 Giorda_2013 Viroporins Customize Host Cells for Efficient Viral Propagation Giorda, Kristina M.; Hebert, Daniel N. 2013 2013-10-01 PMC N PMC3785214 23945006.0 10.1089/dna.2013.2159 ewnvy8fq 0.809992 Mao_J_2019, Kim_S_2018, Shi_J_2012, Cheng_2014, Lester_2014 Bagga_2014, Wulan_2015, Sun_D_2016
36 White_2012 Regulation of stress granules in virus systems White, James P.; Lloyd, Richard E. 2012 2012-04-30 None N PMC3322245 22405519.0 10.1016/j.tim.2012.02.001 v9xo446h 0.807831 Trobaugh_2017, Herbert_2016, den_Boon_2010, Berkhout_2006 Miller_2011, Tsai_2014, Zhang_2019
37 Welsch_2010 Hijacking Cellular Garbage Cans Welsch, Sonja; Locker, Jacomine Krijnse 2010 2010-06-17 PMC N PMC7103366 20542246.0 10.1016/j.chom.2010.05.014 p4eekani 0.807051 Klein_2011, Taschuk_2020, Shi_J_2012, Denison_2008, Kim_S_2018 Giorda_2013, Reggiori_2011, Sun_D_2016
38 Strating_2017 Viral rewiring of cellular lipid metabolism to create membranous replication compartments Strating, Jeroen RPM; van Kuppeveld, Frank JM 2017 2017-08-31 PMC N PMC7127510 28242560.0 10.1016/j.ceb.2017.02.005 r35fd6v0 0.805621 den_Boon_2010, Rice_1992, Compton_2014, Ryu_W_2017, Yasuda-Inoue_2013 Diaz_2012, Neufeldt_2016
39 Hiscox_2007 RNA viruses: hijacking the dynamic nucleolus Hiscox, Julian A. 2007 2007-01-01 PMC N PMC7097444 17224921.0 10.1038/nrmicro1597 01wxo43p 0.804377 den_Boon_2010, Trobaugh_2017, Taschuk_2020, Dubois_2016 Wulan_2015, Matthews_2011, Wang_2010, Diaz_2012
40 Hosmillo_2019 Noroviruses subvert the core stress granule component G3BP1 to promote viral VPg-dependent translation Hosmillo, Myra; Lu, Jia; McAllaster, Michael R; Eaglesham, James B; Wang, Xinjie; Emmott, Edward; Domingues, Patricia; Chaudhry, Yasmin; Fitzmaurice, Tim J; Tung, Matthew KH; Panas, Marc Dominik; McInerney, Gerald; Locker, Nicolas; Wilen, Craig B; Goodfellow, Ian G 2019 2019-08-12 COMM-USE N PMC6739877 31403400.0 10.7554/elife.46681 29nkw7j4 0.803009 Rice_1992, Trobaugh_2017, den_Boon_2010, Meyerson_2017, Yasuda-Inoue_2013 Hosmillo_2019, Sun_D_2016, Case_2017
41 Wileman_2016 Virus Factories and Mini-Organelles Generated for Virus Replication Wileman, T.; Netherton, C.L.; Powell, P.P. 2016 2016-12-31 PMC N PMC7149604 10.1016/b978-0-12-394447-4.20102-8 o5l5i0n1 0.801972 den_Boon_2010, Weissenhorn_2013, Rice_1992, Netherton_2011 Netherton_2011, Sasvari_2010, Diaz_2012, Harak_2015
42 Wang_2011 Regulation of the nucleocytoplasmic trafficking of viral and cellular proteins by ubiquitin and small ubiquitin-related modifiers Wang, Yao E.; Pernet, Olivier; Lee, Benhur 2011 2011-12-28 None N PMC3625690 22188262.0 10.1111/boc.201100105 j173ocu9 0.801479 Hurley_2014, Greene_2012, Taschuk_2020, Tessier_2019 Fulcher_2011, Wimmer_2015, Bailey-Elkin_2017, Zhang_2015
43 Au_H_2014 Novel viral translation strategies Au, Hilda HT; Jan, Eric 2014 2014-07-08 PMC N PMC7169809 25045163.0 10.1002/wrna.1246 6zfwwybx 0.799168 Trobaugh_2017, Rice_1992, Herbert_2016, Gaucherand_2019, Roberts_2009
44 Greco_2009 Involvement of the nucleolus in replication of human viruses Greco, Anna 2009 2009-04-28 PMC N PMC7169183 19399920.0 10.1002/rmv.614 qr9xnk5l 0.798977 den_Boon_2010, Volmer_2010, Trobaugh_2017, Klein_2011, Berkhout_2006
45 Luo_H_2016 Interplay between the virus and the ubiquitin–proteasome system: molecular mechanism of viral pathogenesis Luo, Honglin 2016 2016-04-30 PMC N PMC7102833 26426962.0 10.1016/j.coviro.2015.09.005 7lj4bfli 0.796820 Lester_2014, Shi_J_2012, Kim_S_2018, Viswanathan_2010, Mao_J_2019 Fulcher_2011, van_Tol_2017, Galluzzi_2008, Sun_D_2016
46 Mackenzie_2005 Wrapping Things up about Virus RNA Replication Mackenzie, Jason 2005 2005-09-05 PMC N PMC7169867 16190978.0 10.1111/j.1600-0854.2005.00339.x 6ql7znwx 0.796820 den_Boon_2010, Volmer_2010, Rice_1992, Trobaugh_2017, Weissenhorn_2013
47 Terrier_2016 Nucleolin interacts with influenza A nucleoprotein and contributes to viral ribonucleoprotein complexes nuclear trafficking and efficient influenza viral replication Terrier, Olivier; Carron, Coralie; De Chassey, Benoît; Dubois, Julia; Traversier, Aurélien; Julien, Thomas; Cartet, Gaëlle; Proust, Anaïs; Hacot, Sabine; Ressnikoff, Denis; Lotteau, Vincent; Lina, Bruno; Diaz, Jean-Jacques; Moules, Vincent; Rosa-Calatrava, Manuel 2016 2016-07-04 COMM-USE N PMC4931502 27373907.0 10.1038/srep29006 v891bc3i 0.796649 den_Boon_2010, Volmer_2010, Yasuda-Inoue_2013, Meyerson_2017 Wulan_2015, Neufeldt_2016
48 Wilson_2012 Sumoylation at the Host-Pathogen Interface Wilson, Van G. 2012 2012-04-05 COMM-USE N PMC3685863 23795346.0 10.3390/biom2020203 1awau7hm 0.793864 Berkhout_2006, Lester_2014, Shi_J_2012, Viswanathan_2010 Wimmer_2015, Vigerust_2011, Wilson_2016, El_Motiam_2019
49 Moon_2012 Inhibition and Avoidance of mRNA Degradation by RNA Viruses Moon, Stephanie L.; Barnhart, Michael D.; Wilusz, Jeffrey 2012 2012-08-01 PMC N PMC3424362 22626865.0 10.1016/j.mib.2012.04.009 cwwnsx9y 0.789210 Trobaugh_2017, Herbert_2016, Abernathy_2015, Berkhout_2006 Du_S_2018, Abernathy_2015, Gaete-Argel_2019
50 Boguszewska‐Chachulska_2005 Rna Viruses Redirect Host Factors to Better Amplify Their Genome Boguszewska‐Chachulska, Anna M.; Haenni, Anne‐Lise 2005 2005-12-31 PMC N PMC7119065 16387193.0 10.1016/s0065-3527(05)65002-6 c1qr27lg 0.781198 Trobaugh_2017, Yasuda-Inoue_2013, Rice_1992, den_Boon_2010, Herbert_2016 Chemudupati_2019, Wulan_2015
51 Li_S_2019 Regulation of Ribosomal Proteins on Viral Infection Li, Shuo 2019 2019-05-27 COMM-USE N PMC6562653 31137833.0 10.3390/cells8050508 eewdmyou 0.780401 Berkhout_2006, Trobaugh_2017, Shi_J_2012, den_Boon_2010, Potgieter_1986 Wulan_2015, Zhang_2015, Neufeldt_2016
52 Gustin_2003 Inhibition of nucleo-cytoplasmic trafficking by RNA viruses: targeting the nuclear pore complex Gustin, Kurt E. 2003 2003-09-30 PMC N PMC7125697 12921994.0 10.1016/s0168-1702(03)00165-5 6jrsz9ce 0.777495 den_Boon_2010, Trobaugh_2017, Berkhout_2006, Volmer_2010, Rice_1992 Wulan_2015, Fulcher_2011, Yarbrough_2013, Neufeldt_2016
53 Hsu_N_2010 Viral Reorganization of the Secretory Pathway Generates Distinct Organelles for RNA Replication Hsu, Nai-Yun; Ilnytska, Olha; Belov, Georgiy; Santiana, Marianita; Chen, Ying-Han; Takvorian, Peter M.; Pau, Cyrilla; van der Schaar, Hilde; Kaushik-Basu, Neerja; Balla, Tamas; Cameron, Craig E.; Ehrenfeld, Ellie; van Kuppeveld, Frank J.M.; Altan-Bonnet, Nihal 2010 2010-05-28 PMC N 20510927.0 10.1016/j.cell.2010.03.050 xrw3vbya 0.776612 den_Boon_2010, Weissenhorn_2013, Yasuda-Inoue_2013, Stork_2011
54 Cann_2008 Replication of Viruses Cann, A.J. 2008 2008-12-31 PMC N 10.1016/b978-012374410-4.00486-6 825tdmlr 0.775225 den_Boon_2010, Trobaugh_2017, Potgieter_1986, Rice_1992
55 Diot_2016 Influenza A Virus Polymerase Recruits the RNA Helicase DDX19 to Promote the Nuclear Export of Viral mRNAs Diot, Cédric; Fournier, Guillaume; Dos Santos, Mélanie; Magnus, Julie; Komarova, Anastasia; van der Werf, Sylvie; Munier, Sandie; Naffakh, Nadia 2016 2016-09-22 COMM-USE N PMC5037575 27653209.0 10.1038/srep33763 ga86in78 0.774116 Yasuda-Inoue_2013, Trobaugh_2017, Meyerson_2017, Stork_2011, den_Boon_2010 Yasuda-Inoue_2013, Li_Z_2009
56 Angelini_2014 Untangling Membrane Rearrangement in the Nidovirales Angelini, Megan Mary; Neuman, Benjamin William; Buchmeier, Michael J. 2014 2014-03-01 PMC N PMC3942677 24410069.0 10.1089/dna.2013.2304 rm89rria 0.774043 den_Boon_2010, Weissenhorn_2013, Trobaugh_2017, Denison_2008 Diaz_2012, Enjuanes_2008, Sun_D_2016
57 Kumar_2018 Role of MAPK/MNK1 signaling in virus replication Kumar, Ram; Khandelwal, Nitin; Thachamvally, Riyesh; Tripathi, Bhupendra Nath; Barua, Sanjay; Kashyap, Sudhir Kumar; Maherchandani, Sunil; Kumar, Naveen 2018 2018-07-15 PMC N PMC7114592 29864503.0 10.1016/j.virusres.2018.05.028 xc34ugbe 0.773839 Berkhout_2006, Trobaugh_2017, Kumar_2016, Dixit_2013 Cooray_2007, Chemudupati_2019
58 Yang_2015 RNA chaperones encoded by RNA viruses Yang, Jie; Xia, Hongjie; Qian, Qi; Zhou, Xi 2015 2015-12-22 PMC N PMC7091039 26715301.0 10.1007/s12250-015-3676-2 nhiyibr1 0.772682 Yasuda-Inoue_2013, Taschuk_2020, den_Boon_2010, Stork_2011, Li_Z_2011 Xia_H_2015, Zúñiga_2009, Diaz_2012
59 Guo_L_2018 Viral manipulation of host mRNA decay Guo, Liang; Vlasova-St Louis, Irina; Bohjanen, Paul R 2018 2018-03-01 PMC N PMC5939598 29750084.0 10.2217/fvl-2017-0106 1rm2ruqo 0.772668 Trobaugh_2017, Herbert_2016, Abernathy_2015, Berkhout_2006 Abernathy_2015, Du_S_2018, Gaucherand_2019
60 Stoecklin_2012 Relationship of GW/P-Bodies with Stress Granules Stoecklin, Georg; Kedersha, Nancy 2012 2012-11-02 PMC N PMC4317337 23224972.0 10.1007/978-1-4614-5107-5_12 z6alrae1 0.772129 Dubois_2016, UNKNOWN_1995, Hurley_2014, Emmott_2009 Kedersha_2009, Thomas_2011
61 Reineke_2013 Diversion of stress granules and P-bodies during viral infection Reineke, Lucas C.; Lloyd, Richard E. 2013 2013-02-20 PMC N PMC3611887 23290869.0 10.1016/j.virol.2012.11.017 o24zvqj5 0.769896 den_Boon_2010, Trobaugh_2017, Rice_1992, Herbert_2016, Tsai_2014 Lloyd_2013, Tsai_2014, Zhang_2019
62 Blanchard_2014 Virus‐induced double‐membrane vesicles Blanchard, Emmanuelle; Roingeard, Philippe 2014 2014-10-31 PMC N PMC7162400 10.1111/cmi.12372 mdrghjlt 0.765014 Weissenhorn_2013, Hurley_2014, UNKNOWN_1995, Hobman_1993, den_Boon_2010
63 Taliansky_2010 Chapter 5 Involvement of the Plant Nucleolus in Virus and Viroid Infections Parallels with Animal Pathosystems Taliansky, M.E.; Brown, J.W.S.; Rajamäki, M.L.; Valkonen, J.P.T.; Kalinina, N.O. 2010 2010-12-31 PMC N PMC7149663 20951872.0 10.1016/b978-0-12-385034-8.00005-3 u6x5zd4i 0.761312 den_Boon_2010, Rice_1992, Trobaugh_2017, Berkhout_2006, Li_Z_2011 Wulan_2015, Zhang_2015, Fulcher_2011, Bhat_2011
64 Hagemeijer_2014 Studying the Dynamics of Coronavirus Replicative Structures Hagemeijer, Marne C.; de Haan, Cornelis A. M. 2014 2014-12-18 PMC N PMC7122990 25720487.0 10.1007/978-1-4939-2438-7_22 uozkwxs5 0.760441 den_Boon_2010, Volmer_2010, Rice_1992, Weissenhorn_2013, Stork_2011 Wulan_2015, Zhang_2015
65 Roberts_2009 Chapter 9 Viral Strategies to Subvert the Mammalian Translation Machinery Roberts, Lisa O.; Jopling, Catherine L.; Jackson, Richard J.; Willis, Anne E. 2009 2009-12-31 PMC N PMC7102724 20374746.0 10.1016/s1877-1173(09)90009-6 b37c8aye 0.759695 Trobaugh_2017, Herbert_2016, Berkhout_2006, Gaucherand_2019 Gaucherand_2019, Chemudupati_2019, Sasvari_2011
66 Wulan_2015 Nucleocytoplasmic transport of nucleocapsid proteins of enveloped RNA viruses Wulan, Wahyu N.; Heydet, Deborah; Walker, Erin J.; Gahan, Michelle E.; Ghildyal, Reena 2015 2015-06-02 COMM-USE N PMC4451415 26082769.0 10.3389/fmicb.2015.00553 s935ttyn 0.759361 den_Boon_2010, Rice_1992, Volmer_2010, Trobaugh_2017, Yasuda-Inoue_2013 Zhang_2015, Fulcher_2011, Yarbrough_2013
67 Zhang_2019 Viral Regulation of RNA Granules in Infected Cells Zhang, Qiang; Sharma, Nishi R.; Zheng, Zhi-Ming; Chen, Mingzhou 2019 2019-04-29 COMM-USE N PMC6513825 31037644.0 10.1007/s12250-019-00122-3 9jgg8ukr 0.758482 Herbert_2016, Trobaugh_2017, den_Boon_2010, Berkhout_2006, Tsai_2014 Tsai_2014, Wulan_2015
68 Hosmillo_2019 Noroviruses subvert the core stress granule component G3BP1 to promote viral VPg-dependent translation Myra Hosmillo; Jia Lu; Michael R. McAllaster; James B. Eaglesham; Xinjie Wang; Edward Emmott; Patricia Domingues; Yasmin Chaudhry; Timothy J Fitzmaurice; Matthew K.H. Tung; Marc Panas; Gerald McInerney; Nicholas Locker; Craig B. Willen; Ian Goodfellow 2019 2019-03-08 BioRxiv N 10.1101/571455 d0q5lhf4 0.757810 Rice_1992, Trobaugh_2017, den_Boon_2010, Stork_2011, Yasuda-Inoue_2013 Hosmillo_2019, Sun_D_2016, Sasvari_2011
69 Maier_2012 Involvement of Autophagy in Coronavirus Replication Maier, Helena J.; Britton, Paul 2012 2012-11-30 COMM-USE N PMC3528273 23202545.0 10.3390/v4123440 yr678u8c 0.757142 den_Boon_2010, Meyerson_2017, Volmer_2010, Greene_2012 Ding_2017, Ávila-Pérez_2019
70 Lin_M_2012 Nullbasic, a Potent Anti-HIV Tat Mutant, Induces CRM1-Dependent Disruption of HIV Rev Trafficking Lin, Min-Hsuan; Sivakumaran, Haran; Apolloni, Ann; Wei, Ting; Jans, David A.; Harrich, David 2012 2012-12-10 COMM-USE N PMC3519632 23251541.0 10.1371/journal.pone.0051466 ndiwmnv0 0.757022 Yasuda-Inoue_2013, Greene_2012, Volmer_2010, UNKNOWN_1995 Arizala_2018, Jarboui_2012, Yan_J_2020
71 Wang_2016 Mechanisms of Cellular Membrane Reorganization to Support Hepatitis C Virus Replication Wang, Hongliang; Tai, Andrew W. 2016 2016-05-20 COMM-USE N PMC4885097 27213428.0 10.3390/v8050142 gr6v098c 0.756507 den_Boon_2010, Potgieter_1986, Trobaugh_2017, Rice_1992, Shi_J_2012 Neufeldt_2016, Diaz_2012
72 Shi_S_2000 Heterogeneous nuclear ribonucleoprotein A1 regulates RNA synthesis of a cytoplasmic virus Shi, Stephanie T.; Huang, Peiyong; Li, Hsin-Pai; Lai, Michael M.C. 2000 2000-09-01 PMC N PMC302072 10970862.0 10.1093/emboj/19.17.4701 6lvn10f4 0.756379 Yasuda-Inoue_2013, Meyerson_2017, Stork_2011, Blank_2017
73 Gaete-Argel_2019 Strategies for Success. Viral Infections and Membraneless Organelles Gaete-Argel, Aracelly; Márquez, Chantal L.; Barriga, Gonzalo P.; Soto-Rifo, Ricardo; Valiente-Echeverría, Fernando 2019 2019-10-11 COMM-USE N PMC6797609 31681621.0 10.3389/fcimb.2019.00336 3xof6e7g 0.754141 Trobaugh_2017, Herbert_2016, Yasuda-Inoue_2013, Haasnoot_2010, Moon_2012 Zhang_2019, Diaz_2012, Neufeldt_2016, Wulan_2015
74 Miller_2011 Stress Granules and Virus Replication Miller, Cathy L. 2011 2011-11-01 PMC N PMC4574952 26388931.0 10.2217/fvl.11.108 pzuff2al 0.753321 Blank_2017, Trobaugh_2017, Meyerson_2017, Yasuda-Inoue_2013, Ivanova_2015 Montero_2011
75 V’kovski_2015 New insights on the role of paired membrane structures in coronavirus replication V’kovski, Philip; Al-Mulla, Hawaa; Thiel, Volker; Neuman, Benjamin W. 2015 2015-04-16 PMC N PMC7114427 25550072.0 10.1016/j.virusres.2014.12.021 psjua913 0.751254 den_Boon_2010, Taschuk_2020, Klein_2011, Yasuda-Inoue_2013 Diaz_2012, Hagemeijer_2014, Neufeldt_2016
76 López‐Lastra_2010 Translation initiation of viral mRNAs López‐Lastra, Marcelo; Ramdohr, Pablo; Letelier, Alejandro; Vallejos, Maricarmen; Vera‐Otarola, Jorge; Valiente‐Echeverría, Fernando 2010 2010-04-26 PMC N PMC7169124 20440748.0 10.1002/rmv.649 mycpozhk 0.748104 Trobaugh_2017, Berkhout_2006, Herbert_2016, Abernathy_2015, Moon_2012
77 Drummond_2011 Diauxic shift-dependent relocalization of decapping activators Dhh1 and Pat1 to polysomal complexes Drummond, Sheona P.; Hildyard, John; Firczuk, Helena; Reamtong, Onrapak; Li, Ning; Kannambath, Shichina; Claydon, Amy J.; Beynon, Robert J.; Eyers, Claire E.; McCarthy, John E. G. 2011 2011-06-28 NONCOMM N PMC3177209 21712243.0 10.1093/nar/gkr474 1jdcdwxo 0.746598 Blank_2017, Yasuda-Inoue_2013, Ivanova_2015, Dubois_2016 Sasvari_2011, Li_Z_2009
78 Ding_2016 Nucleocapsid proteins: roles beyond viral RNA packaging Ding, Binbin; Qin, Yali; Chen, Mingzhou 2016 2016-01-08 PMC N PMC7169677 26749541.0 10.1002/wrna.1326 xgl5aio0 0.744502 Yasuda-Inoue_2013, Stork_2011, den_Boon_2010, Trobaugh_2017, Shi_S_2005
79 Hurley_2014 Atomistic Autophagy: The Structures of Cellular Self-Digestion Hurley, James H.; Schulman, Brenda A. 2014 2014-04-10 PMC N 24725401.0 10.1016/j.cell.2014.01.070 4opsw6dt 0.744389 UNKNOWN_1995, Jonker_2018, Weissenhorn_2013, Pridgeon_2008
80 Salvetti_2014 Viruses and the nucleolus: The fatal attraction Salvetti, Anna; Greco, Anna 2014 2014-06-30 PMC N PMC7135015 24378568.0 10.1016/j.bbadis.2013.12.010 9ums2e9n 0.743897 den_Boon_2010, Volmer_2010, Taschuk_2020, Dubois_2016, Trobaugh_2017 Wulan_2015, Fulcher_2011, Sun_D_2016
81 Wendt_2020 The Ebola Virus Nucleoprotein Recruits the Nuclear RNA Export Factor NXF1 into Inclusion Bodies to Facilitate Viral Protein Expression Wendt, Lisa; Brandt, Janine; Bodmer, Bianca S.; Reiche, Sven; Schmidt, Marie Luisa; Traeger, Shelby; Hoenen, Thomas 2020 2020-01-11 COMM-USE N PMC7017048 31940815.0 10.3390/cells9010187 fbw99knd 0.740610 Yasuda-Inoue_2013, Meyerson_2017, Li_C_2014, Stork_2011, Volmer_2010 Wulan_2015, Yan_J_2020
82 Fahmy_2017 The autophagy elongation complex (ATG5-12/16L1) positively regulates HCV replication and is required for wild-type membranous web formation Fahmy, Ahmed M.; Labonté, Patrick 2017 2017-01-09 COMM-USE N PMC5220323 28067309.0 10.1038/srep40351 shk4n8f6 0.740206 Greene_2012, Volmer_2010, Meyerson_2017, Kang_2009, Liu_H_2009 Neufeldt_2016, Guévin_2010, Romero-Brey_2015
83 Rossignol_2015 The Role of Electron Microscopy in Studying the Continuum of Changes in Membranous Structures during Poliovirus Infection Rossignol, Evan D.; Yang, Jie E.; Bullitt, Esther 2015 2015-10-12 COMM-USE N PMC4632382 26473912.0 10.3390/v7102874 az2hdsob 0.740206 den_Boon_2010, Trobaugh_2017, Weissenhorn_2013, Volmer_2010, Rice_1992 Zhang_2015, Wulan_2015
84 Solvik_2016 At the crossroads of autophagy and infection: Noncanonical roles for ATG proteins in viral replication Solvik, Tina; Debnath, Jayanta 2016 2016-08-29 NONCOMM N PMC5004452 27573461.0 10.1083/jcb.201608032 p7k98yjy 0.737775 Yasuda-Inoue_2013, Berkhout_2006, Blank_2017, Trobaugh_2017 Rey-Jurado_2015, Lin_L_2010, Cheng_2014
85 Yarbrough_2013 Viral Subversion of Nucleocytoplasmic Trafficking Yarbrough, Melanie L.; Mata, Miguel A.; Sakthivel, Ramanavelan; Fontoura, Beatriz M. A. 2013 2013-12-02 None N PMC3910510 24289861.0 10.1111/tra.12137 5g58qfn6 0.735032 Trobaugh_2017, Tessier_2019, Berkhout_2006, Taschuk_2020 Fulcher_2011, Wulan_2015, Zhang_2015, Neufeldt_2016
86 Nagy_2008 Host Factors Promoting Viral RNA Replication Nagy, Peter D.; Pogany, Judit 2008 2008-11-01 PMC N PMC7120932 10.1007/b135974_14 gskcaawt 0.734710 den_Boon_2010, Rice_1992, Trobaugh_2017, Berkhout_2006, Li_Z_2011 Wulan_2015, Diaz_2012, Li_Z_2009
87 Tenorio_2019 Function, Architecture, and Biogenesis of Reovirus Replication Neoorganelles Tenorio, Raquel; Fernández de Castro, Isabel; Knowlton, Jonathan J.; Zamora, Paula F.; Sutherland, Danica M.; Risco, Cristina; Dermody, Terence S. 2019 2019-03-21 COMM-USE N PMC6466366 30901959.0 10.3390/v11030288 3yk5c94t 0.731798 den_Boon_2010, Rice_1992, Compton_2014, Lenard_2008, Stork_2011 Wulan_2015, Neufeldt_2016
88 Stapleford_2010 Role of Cellular Lipids in Positive-Sense RNA Virus Replication Complex Assembly and Function Stapleford, Kenneth A.; Miller, David J. 2010 2010-04-29 COMM-USE N PMC3187604 21994671.0 10.3390/v2051055 ayacjojb 0.725848 den_Boon_2010, Rice_1992, Trobaugh_2017, Berkhout_2006, Wang_2018 Diaz_2012, Neufeldt_2016, Wulan_2015, Harak_2015
89 Emmott_2009 Nucleolar targeting: the hub of the matter Emmott, Edward; Hiscox, Julian A 2009 2009-02-20 PMC N PMC2658561 19229283.0 10.1038/embor.2009.14 5x6n19e8 0.725097 Dubois_2016, Volmer_2010, Tessier_2019, Hurley_2014 Sirri_2007, Fulcher_2011, Dubois_2016
90 Ahlquist_2006 Parallels among positive-strand RNA viruses, reverse-transcribing viruses and double-stranded RNA viruses Ahlquist, Paul 2006 2006-04-03 PMC N PMC7097367 16582931.0 10.1038/nrmicro1389 b648h28z 0.722677 den_Boon_2010, Rice_1992, Ryu_W_2017, Payne_2017, Wang_2018 Diaz_2012, Bhullar_2014
91 Mazzon_2019 Targeting viral entry as a strategy for broad-spectrum antivirals Mazzon, Michela; Marsh, Mark 2019 2019-09-12 COMM-USE N PMC6743247 31559009.0 10.12688/f1000research.19694.1 ll34i3eg 0.719197 Berkhout_2006, Trobaugh_2017, Rivas_2016, Haasnoot_2010 Teissier_2010, Tai_C_2015, Martínez_2008, Lin_K_2013
92 Xu_Z_2012 The helicase activity of DDX56 is required for its role in assembly of infectious West Nile virus particles Xu, Zaikun; Hobman, Tom C. 2012 2012-11-10 PMC N PMC7119007 22925334.0 10.1016/j.virol.2012.08.011 nfgjz6f9 0.718624 Yasuda-Inoue_2013, den_Boon_2010, Meyerson_2017, Volmer_2010 van_der_Linden_2014, Sun_D_2016
93 Jaafar_2018 Viral RNA structure-based strategies to manipulate translation Jaafar, Zane A.; Kieft, Jeffrey S. 2018 2018-12-04 PMC N PMC6452865 30514982.0 10.1038/s41579-018-0117-x 3t78vm63 0.718293 Trobaugh_2017, Berkhout_2006, Denison_2008, Roberts_2009, Rivas_2016 Roberts_2009, Wulan_2015
94 Tsai_2014 Cytoplasmic RNA Granules and Viral Infection Tsai, Wei-Chih; Lloyd, Richard E. 2014 2014-11-03 PMC N PMC4867093 26958719.0 10.1146/annurev-virology-031413-085505 mbsemrty 0.717188 Yasuda-Inoue_2013, Trobaugh_2017, den_Boon_2010, Herbert_2016 Zhang_2019, Lloyd_2013, Reineke_2013
95 Dubois_2016 The Nucleolus: Structure and Function Dubois, Marie-Line; Boisvert, François-Michel 2016 2016-04-23 PMC N PMC7123373 10.1007/978-3-319-38882-3_2 xw20yrbv 0.716662 Blank_2017, Brown_2008, Sirri_2007, Volmer_2010 Sirri_2007, Stępiński_2014, Brown_2008
96 Mauthe_2016 An siRNA screen for ATG protein depletion reveals the extent of the unconventional functions of the autophagy proteome in virus replication Mauthe, Mario; Langereis, Martijn; Jung, Jennifer; Zhou, Xingdong; Jones, Alex; Omta, Wienand; Tooze, Sharon A.; Stork, Björn; Paludan, Søren Riis; Ahola, Tero; Egan, Dave; Behrends, Christian; Mokry, Michal; de Haan, Cornelis; van Kuppeveld, Frank; Reggiori, Fulvio 2016 2016-08-29 NONCOMM N PMC5004442 27573464.0 10.1083/jcb.201602046 iuqa0yrw 0.715195 Trobaugh_2017, Haasnoot_2010, Volmer_2010, Berkhout_2006 Ávila-Pérez_2019, Yan_J_2020, Hwang_2012
97 Li_Z_2019 PI4KB on Inclusion Bodies Formed by ER Membrane Remodeling Facilitates Replication of Human Parainfluenza Virus Type 3 Li, Zhifei; Guo, Dong; Qin, Yali; Chen, Mingzhou 2019 2019-11-19 None N PMC7104050 31747597.0 10.1016/j.celrep.2019.10.052 r4gpzfv5 0.715074 den_Boon_2010, Tallmadge_2008, Meyerson_2017, Stork_2011 Romero-Brey_2015
98 Hellen_1992 The role of proteolytic processing in the morphogenesis of virus particles Hellen, C. U. T.; Wimmer, E. 1992 1992-01-01 PMC N PMC7087542 1740191.0 10.1007/bf01923512 pk2vmnns 0.711838 den_Boon_2010, Rice_1992, Stork_2011, Taschuk_2020, Trobaugh_2017 Sun_D_2016
99 Guévin_2010 Autophagy protein ATG5 interacts transiently with the hepatitis C virus RNA polymerase (NS5B) early during infection Guévin, Carl; Manna, David; Bélanger, Claudia; Konan, Kouacou V.; Mak, Paul; Labonté, Patrick 2010 2010-09-15 PMC N PMC2925245 20580051.0 10.1016/j.virol.2010.05.032 7hyelm88 0.709538 Meyerson_2017, Li_C_2014, Liu_H_2009, Ban_J_2018, Li_C_2013 Neufeldt_2016
100 Sirri_2007 Nucleolus: the fascinating nuclear body Sirri, Valentina; Urcuqui-Inchima, Silvio; Roussel, Pascal; Hernandez-Verdun, Danièle 2007 2007-11-29 PMC N PMC2137947 18046571.0 10.1007/s00418-007-0359-6 y2nhss9u 0.707986 Dubois_2016, Volmer_2010, Brown_2008, Yasuda-Inoue_2013 Wulan_2015, Dubois_2016
101 Cheng_2014 Commentary on the Regulation of Viral Proteins in Autophagy Process Cheng, Ching-Yuan; Chi, Pei-I; Liu, Hung-Jen 2014 2014-03-10 COMM-USE N PMC3966343 24734254.0 10.1155/2014/962915 k3j858ik 0.707416 Lester_2014, Shi_J_2012, Kim_S_2018, Klein_2011 Espert_2007, Lin_L_2010, Shoji-Kawata_2009
102 Brown_2008 The Role of the Plant Nucleolus in Pre-mRNA Processing Brown, J. W. S.; Shaw, P. J. 2008 2008-01-01 PMC N PMC7121088 18630759.0 10.1007/978-3-540-76776-3_16 n3omlvfl 0.705382 Dubois_2016, Yasuda-Inoue_2013, Blank_2017, Ivanova_2015 Sirri_2007, Wang_2010, Byszewska_2015
103 Desfarges_2012 Viral Integration and Consequences on Host Gene Expression Desfarges, Sébastien; Ciuffi, Angela 2012 2012-09-25 PMC N PMC7120651 10.1007/978-94-007-4899-6_7 5tysuiuw 0.703192 Hull_2014, Berkhout_2006, Trobaugh_2017, Rice_1992 Bagga_2014, Giorda_2013
104 Levene_2018 Host Shutoff in Influenza A Virus: Many Means to an End Levene, Rachel Emily; Gaglia, Marta Maria 2018 2018-09-05 COMM-USE N PMC6165434 30189604.0 10.3390/v10090475 84fv3na7 0.702999 Potgieter_1986, Rice_1992, Trobaugh_2017, den_Boon_2010 Gaucherand_2019, Brass_2009, Chemudupati_2019
105 Lloyd_2006 Translational control by viral proteinases Lloyd, Richard E. 2006 2006-07-31 PMC N 16303201.0 10.1016/j.virusres.2005.10.016 o6lo55o8 0.702362 Rice_1992, Trobaugh_2017, den_Boon_2010, Herbert_2016
106 Sakai_2017 Two-amino acids change in the nsp4 of SARS coronavirus abolishes viral replication Sakai, Yusuke; Kawachi, Kengo; Terada, Yutaka; Omori, Hiroko; Matsuura, Yoshiharu; Kamitani, Wataru 2017 2017-10-31 PMC N PMC7111695 28738245.0 10.1016/j.virol.2017.07.019 slh52nxm 0.701875 Meyerson_2017, den_Boon_2010, Volmer_2010, Yasuda-Inoue_2013, Stork_2011 Brockway_2005, Masante_2015, Kanjanahaluethai_2007
107 Jordan_2012 Manipulation or capitulation: virus interactions with autophagy Jordan, Tristan X.; Randall, Glenn 2012 2012-02-29 None N PMC3264745 22051604.0 10.1016/j.micinf.2011.09.007 fuufglcb 0.701875 Lester_2014, Mao_J_2019, Kim_S_2018, Shi_J_2012, Viswanathan_2010 Lin_L_2010, Cheng_2014, Lee_H_2008
108 Dickson_2011 Strategies for viral RNA stability: live long and prosper Dickson, Alexa M.; Wilusz, Jeffrey 2011 2011-07-31 None N PMC3123725 21640425.0 10.1016/j.tig.2011.04.003 7nyo34vq 0.701023 Trobaugh_2017, Herbert_2016, Rice_1992, Berkhout_2006 Diaz_2012, Sun_D_2016
109 Brunner_2010 Delayed kinetics of poliovirus RNA synthesis in a human cell line with reduced levels of hnRNP C proteins Brunner, Jo Ellen; Ertel, Kenneth J.; Rozovics, Janet M.; Semler, Bert L. 2010 2010-05-10 None N PMC2844484 20189623.0 10.1016/j.virol.2010.01.031 0eqauqje 0.700744 Shi_S_2000, Volmer_2010, Yasuda-Inoue_2013, Liu_H_2009 Shi_S_2000
110 Delang_2012 The role of phosphatidylinositol 4-kinases and phosphatidylinositol 4-phosphate during viral replication Delang, Leen; Paeshuyse, Jan; Neyts, Johan 2012 2012-12-01 PMC N PMC7111036 22885339.0 10.1016/j.bcp.2012.07.034 dvqo658c 0.700584 Kumar_2016, Greene_2012, Clayton_2013, Ban_J_2018, Meyerson_2017 Clayton_2013, Fulcher_2011
111 Emmett_2005 The Cell Cycle and Virus Infection Emmett, Stevan R.; Dove, Brian; Mahoney, Laura; Wurm, Torsten; Hiscox, Julian A. 2005 2005-01-01 PMC N PMC7120536 15576934.0 10.1385/1-59259-857-9:197 aenuyht0 0.699287 den_Boon_2010, Trobaugh_2017, Volmer_2010, Rice_1992, Berkhout_2006 Bagga_2014, Wulan_2015, Netherton_2007
112 Ulasli_2010 Qualitative and quantitative ultrastructural analysis of the membrane rearrangements induced by coronavirus Ulasli, Mustafa; Verheije, Monique H.; de Haan, Cornelis A. M.; Reggiori, Fulvio 2010 2010-01-20 PMC N PMC7159092 20088951.0 10.1111/j.1462-5822.2010.01437.x z7bdiuvx 0.699061 Volmer_2010, den_Boon_2010, Terrier_2016, Quiner_2010, Weissenhorn_2013
113 Lever_2011 Insights into cellular factors that regulate HIV-1 replication in human cells Lever, Andrew ML; Jeang, Kuan-Teh 2011 2011-02-15 PMC N PMC3035746 21218853.0 10.1021/bi101805f lkrgdt6y 0.697425 Trobaugh_2017, Berkhout_2006, den_Boon_2010, Haasnoot_2010 Sun_D_2016, Jeang_2006
114 Diehl_2013 Make Yourself at Home: Viral Hijacking of the PI3K/Akt Signaling Pathway Diehl, Nora; Schaal, Heiner 2013 2013-12-16 COMM-USE N PMC3967167 24351799.0 10.3390/v5123192 5dxclfnr 0.696878 Berkhout_2006, Shi_J_2012, Trobaugh_2017, Lester_2014 Lin_L_2010, Fulcher_2011, van_Tol_2017, Watanabe_2019
115 Fung_2018 Post-translational modifications of coronavirus proteins: roles and function Fung, To Sing; Liu, Ding Xiang 2018 2018-05-21 NONCOMM N PMC7080180 10.2217/fvl-2018-0008 38c28tw1 0.696878 Trobaugh_2017, Shi_S_2005, den_Boon_2010, Volmer_2010, Yasuda-Inoue_2013 Zhang_2015, Niemann_1982, Vigerust_2011, Voß_D_2009
116 Matthews_2011 Viruses and the Nucleolus Matthews, David; Emmott, Edward; Hiscox, Julian 2011 2011-05-23 PMC N PMC7121007 10.1007/978-1-4614-0514-6_14 x8t3lf1x 0.696116 den_Boon_2010, Trobaugh_2017, Berkhout_2006, Taschuk_2020, Rice_1992 Wulan_2015, Wang_2010, Fulcher_2011, Hiscox_2007
117 Santoro_2009 Role of Heat Shock Proteins in Viral Infection Santoro, M. Gabriella; Amici, Carla; Rossi, Antonio 2009 2009-10-24 PMC N PMC7121897 10.1007/978-90-481-2976-8_3 mth4aebn 0.692361 Trobaugh_2017, Berkhout_2006, Volmer_2010, Potgieter_1986 Song_2018, Sun_D_2016, Rott_1987
118 Wilson_2016 Viral Interplay with the Host Sumoylation System Wilson, Van G. 2016 2016-12-12 PMC N PMC7121812 28197923.0 10.1007/978-3-319-50044-7_21 783kpnkq 0.692343 Berkhout_2006, Shi_J_2012, Lester_2014, Taschuk_2020, Viswanathan_2010 Chemudupati_2019, van_Tol_2017, Wimmer_2015, Fulcher_2011
119 Fondong_2013 Geminivirus protein structure and function Fondong, Vincent N. 2013 2013-04-25 PMC N PMC6638828 23615043.0 10.1111/mpp.12032 eo3bei9x 0.691558 den_Boon_2010, Rice_1992, Trobaugh_2017, Berkhout_2006, Haasnoot_2010 Sun_D_2016, Zhang_2015, Wulan_2015, Diaz_2012
120 Reggiori_2016 At the Center of Autophagy: Autophagosomes Reggiori, F.; Mauthe, M. 2016 2016-12-31 PMC N 10.1016/b978-0-12-394447-4.20021-7 a9vokm4n 0.691054 Hurley_2014, UNKNOWN_1995, Jonker_2018, Hobman_1993
121 Nagy_2010 Chapter 4 Global Genomics and Proteomics Approaches to Identify Host Factors as Targets to Induce Resistance Against Tomato Bushy Stunt Virus Nagy, Peter D.; Pogany, Judit 2010 2010-12-31 PMC N 10.1016/s0065-3527(10)76004-8 cob7a5uh 0.689108 Rice_1992, den_Boon_2010, Berkhout_2006, Trobaugh_2017, Herbert_2016
122 Dove_2006 Changes in nucleolar morphology and proteins during infection with the coronavirus infectious bronchitis virus Dove, Brian K.; You, Jae‐Hwan; Reed, Mark L.; Emmett, Stevan R.; Brooks, Gavin; Hiscox, Julian A. 2006 2006-03-03 PMC N PMC7162191 16819967.0 10.1111/j.1462-5822.2006.00698.x pbf11zy1 0.688343 Volmer_2010, den_Boon_2010, Dubois_2016, Terrier_2016
123 Charman_2020 Replication Compartments of DNA Viruses in the Nucleus: Location, Location, Location Charman, Matthew; Weitzman, Matthew D. 2020 2020-01-29 COMM-USE N PMC7077188 32013091.0 10.3390/v12020151 hygxwl2f 0.687722 den_Boon_2010, Trobaugh_2017, Potgieter_1986, Rice_1992, Shi_J_2012 Wulan_2015, Harak_2015, Giorda_2013, Netherton_2007
124 Jackson_2005 Subversion of Cellular Autophagosomal Machinery by RNA Viruses Jackson, William T; Giddings, Thomas H; Taylor, Matthew P; Mulinyawe, Sara; Rabinovitch, Marlene; Kopito, Ron R; Kirkegaard, Karla 2005 2005-04-26 COMM-USE N PMC1084330 15884975.0 10.1371/journal.pbio.0030156 4mnaicki 0.687171 Volmer_2010, Greene_2012, den_Boon_2010, Compton_2014, Meyerson_2017 Ding_2017, Ávila-Pérez_2019
125 Viktorovskaya_2016 Identification of RNA Binding Proteins Associated with Dengue Virus RNA in Infected Cells Reveals Temporally Distinct Host Factor Requirements Viktorovskaya, Olga V.; Greco, Todd M.; Cristea, Ileana M.; Thompson, Sunnie R. 2016 2016-08-24 COMM-USE N PMC4996428 27556644.0 10.1371/journal.pntd.0004921 v8lpw4r7 0.686923 Trobaugh_2017, Rice_1992, den_Boon_2010, Berkhout_2006, Compton_2014 Brass_2009, Zhang_2015, Neufeldt_2016
126 Boggio_2006 Viruses and sumoylation: recent highlights Boggio, Roberto; Chiocca, Susanna 2006 2006-08-31 PMC N PMC7108358 16815735.0 10.1016/j.mib.2006.06.008 m69hf9ys 0.685627 Choudhury_2017, Taschuk_2020, El_Motiam_2019, Wilson_2012 Wimmer_2015, Deng_2019, Watanabe_2019
127 Taschuk_2020 DEAD-Box Helicases: Sensors, Regulators, and Effectors for Antiviral Defense Taschuk, Frances; Cherry, Sara 2020 2020-02-05 COMM-USE N PMC7077277 32033386.0 10.3390/v12020181 670yseio 0.685236 Yasuda-Inoue_2013, Li_Z_2011, Shi_J_2012, Klein_2011 Fullam_2013, Yasuda-Inoue_2013, Perčulija_2019
128 Cheng_2018 DDX5 RNA Helicases: Emerging Roles in Viral Infection Cheng, Wenyu; Chen, Guohua; Jia, Huaijie; He, Xiaobing; Jing, Zhizhong 2018 2018-04-09 COMM-USE N PMC5979547 29642538.0 10.3390/ijms19041122 5fw9abzl 0.684497 Yasuda-Inoue_2013, Trobaugh_2017, Taschuk_2020, Meyerson_2017, den_Boon_2010 Ariumi_2014, Yasuda-Inoue_2013, Xia_H_2015
129 Glingston_2019 Organelle dynamics and viral infections: at cross roads Glingston, R. Sahaya; Deb, Rachayeeta; Kumar, Sachin; Nagotu, Shirisha 2019 2019-02-28 PMC N PMC7110583 29953921.0 10.1016/j.micinf.2018.06.002 hbpfz8rt 0.682565 Shi_J_2012, Berkhout_2006, Cheng_2014, Mao_J_2019, den_Boon_2010 Lin_L_2010, Grangeon_2012, Sze_C_2015
130 Mouland_2012 22 Role of Dynein in Viral Pathogenesis Mouland, Andrew J.; Milev, Miroslav P. 2012 2012-12-31 PMC N PMC7150345 10.1016/b978-0-12-382004-4.10022-6 cq1kbjkr 0.681753 den_Boon_2010, Berkhout_2006, Trobaugh_2017, Volmer_2010, Rice_1992 Fulcher_2011, Wulan_2015, Neufeldt_2016, Sun_D_2016
131 Gonzales-van_Horn_2017 Making the Mark: The Role of Adenosine Modifications in the Life Cycle of RNA Viruses Gonzales-van Horn, Sarah R.; Sarnow, Peter 2017 2017-06-14 None N PMC5555051 28618265.0 10.1016/j.chom.2017.05.008 ot7a2h9p 0.681073 Trobaugh_2017, Berkhout_2006, Herbert_2016, Haasnoot_2010, Shi_J_2012 Sun_D_2016, Masante_2015, Chen_2016
132 Ávila‐Pérez_2016 Ultrastructural characterization of membranous torovirus replication factories Ávila‐Pérez, Ginés; Rejas, María Teresa; Rodríguez, Dolores 2016 2016-07-05 PMC N PMC7162420 27218226.0 10.1111/cmi.12620 5psqxxc8 0.680987 den_Boon_2010, Volmer_2010, Rice_1992, Ryu_W_2017, Payne_2017
133 Mazzon_2014 Lipid interactions during virus entry and infection Mazzon, Michela; Mercer, Jason 2014 2014-09-11 COMM-USE N PMC4265854 25131438.0 10.1111/cmi.12340 emfnhenm 0.680007 Kim_S_2018, Shi_J_2012, Weissenhorn_2013, Mao_J_2019 Giorda_2013, Watanabe_2019, Grove_2011, Chan_2010
134 Mudhakir_2009 Learning from the Viral Journey: How to Enter Cells and How to Overcome Intracellular Barriers to Reach the Nucleus Mudhakir, Diky; Harashima, Hideyoshi 2009 2009-02-05 PMC N PMC2664881 19194803.0 10.1208/s12248-009-9080-9 4b5s9nal 0.678158 Rice_1992, Mao_J_2019, den_Boon_2010, Weissenhorn_2013 Giorda_2013, Fulcher_2011, Watanabe_2019
135 Ploubidou_2001 Viral transport and the cytoskeleton Ploubidou, Aspasia; Way, Michael 2001 2001-02-01 PMC N PMC7125730 11163140.0 10.1016/s0955-0674(00)00180-0 x3wes54j 0.677844 Denison_2008, Shi_J_2012, Lester_2014, Kim_S_2018 Sze_C_2015, Mak_T_2016, Veiga_2006
136 Grangeon_2012 Host endomembrane recruitment for plant RNA virus replication Grangeon, Romain; Jiang, Jun; Laliberté, Jean-François 2012 2012-12-31 PMC N 23123078.0 10.1016/j.coviro.2012.10.003 l65ygqyu 0.676001 Hobman_1993, Weissenhorn_2013, UNKNOWN_1995, den_Boon_2010 Fulcher_2011, Wulan_2015, Neufeldt_2016
137 Yang_2014 Studying Coronavirus–Host Protein Interactions Yang, Chee-Hing; Li, Hui-Chun; Hung, Cheng-Huei; Lo, Shih-Yen 2014 2014-12-18 PMC N PMC7121234 25720482.0 10.1007/978-1-4939-2438-7_17 ebr8jy1e 0.675056 Berkhout_2006, Trobaugh_2017, Rice_1992, den_Boon_2010 Zhang_2015, Popescu_2011
138 Murray_2008 Architects of Assembly: roles of Flaviviridae nonstructural proteins in virion morphogenesis Murray, Catherine L.; Jones, Christopher T.; Rice, Charles M. 2008 2008-06-30 PMC N PMC2764292 18587411.0 10.1038/nrmicro1928 jcn7v69v 0.673792 Ryu_W_2017, Taschuk_2020, den_Boon_2010, Lu_P_2016 Narayanan_2015, Watanabe_2019, Zhou_2012, Sun_D_2016
139 Knoops_2008 SARS-Coronavirus Replication Is Supported by a Reticulovesicular Network of Modified Endoplasmic Reticulum Knoops, Kèvin; Kikkert, Marjolein; van den Worm, Sjoerd H. E.; Zevenhoven-Dobbe, Jessika C; van der Meer, Yvonne; Koster, Abraham J; Mommaas, A. Mieke; Snijder, Eric J 2008 2008-09-16 COMM-USE N PMC2535663 18798692.0 10.1371/journal.pbio.0060226 210dwhgj 0.672380 den_Boon_2010, Weissenhorn_2013, Welsch_2009, Hobman_1993, Lenard_2008 Neufeldt_2016, Hagemeijer_2014, Wulan_2015
140 Goodwin_2015 Stealing the Keys to the Kitchen: Viral Manipulation of the Host Cell Metabolic Network Goodwin, Christopher M.; Xu, Shihao; Munger, Joshua 2015 2015-12-31 None N PMC4679435 26439298.0 10.1016/j.tim.2015.08.007 phl7kr8f 0.672327 Lester_2014, Mao_J_2019, Berkhout_2006, Shi_J_2012, Kim_S_2018 Mayer_2019, Giorda_2013, Lin_L_2010
141 Fulcher_2011 Regulation of nucleocytoplasmic trafficking of viral proteins: An integral role in pathogenesis? Fulcher, Alex J.; Jans, David A. 2011 2011-12-31 PMC N PMC7114211 21530593.0 10.1016/j.bbamcr.2011.03.019 wggzeqwe 0.672238 Greene_2012, Trobaugh_2017, Yasuda-Inoue_2013, Tessier_2019, Meyerson_2017 Yarbrough_2013, Zhang_2015, Wulan_2015
142 Neufeldt_2016 The Hepatitis C Virus-Induced Membranous Web and Associated Nuclear Transport Machinery Limit Access of Pattern Recognition Receptors to Viral Replication Sites Neufeldt, Christopher J.; Joyce, Michael A.; Van Buuren, Nicholas; Levin, Aviad; Kirkegaard, Karla; Gale Jr., Michael; Tyrrell, D. Lorne J.; Wozniak, Richard W. 2016 2016-02-10 COMM-USE N PMC4749181 26863439.0 10.1371/journal.ppat.1005428 1kuggdzj 0.672238 den_Boon_2010, Meyerson_2017, Rice_1992, Trobaugh_2017, Greene_2012 Bonamassa_2015, Popescu_2011
143 Zhu_Y_2016 Enterovirus 71 induces anti-viral stress granule-like structures in RD cells Zhu, Yuanmei; Wang, Bei; Huang, He; Zhao, Zhendong 2016 2016-08-05 None N PMC7124267 27216457.0 10.1016/j.bbrc.2016.05.094 pvbvgaor 0.670677 Trobaugh_2017, den_Boon_2010, Greene_2012, Volmer_2010, Berkhout_2006
144 Gaucherand_2018 The influenza A virus endoribonuclease PA-X usurps host mRNA processing machinery to limit host gene expression Lea Gaucherand; Brittany K. Porter; Summer K. Schmaling; Christopher Harley Rycroft; Yuzo Kevorkian; Craig McCormick; Denys A. Khaperskyy; Marta Maria Gaglia 2018 2018-10-14 BioRxiv N 10.1101/442996 8k7w467p 0.670677 Gaucherand_2019, Trobaugh_2017, Rice_1992, Herbert_2016 Gaucherand_2019, Case_2017, Neufeldt_2016
145 Bestebroer_2013 Hidden Behind Autophagy: The Unconventional Roles of ATG Proteins Bestebroer, Jovanka; V'kovski, Philip; Mauthe, Mario; Reggiori, Fulvio 2013 2013-07-30 PMC N PMC7169877 23837619.0 10.1111/tra.12091 48kealmj 0.669575 Hurley_2014, Klein_2011, Shi_J_2012, Viswanathan_2010, Taschuk_2020
146 Balvay_2007 Translational control of retroviruses Balvay, Laurent; Lastra, Marcelo Lopez; Sargueil, Bruno; Darlix, Jean-Luc; Ohlmann, Théophile 2007 2007-01-01 PMC N PMC7096986 17224922.0 10.1038/nrmicro1599 ymuhb7tu 0.667686 Rice_1992, den_Boon_2010, Stork_2011, Yasuda-Inoue_2013, Trobaugh_2017 Tzeng_2006, Guerrero_2015
147 Burke_2014 Structures of PI4KIIIβ complexes show simultaneous recruitment of Rab11 and its effectors Burke, John E.; Inglis, Alison J.; Perisic, Olga; Masson, Glenn R.; McLaughlin, Stephen H.; Rutaganira, Florentine; Shokat, Kevan M.; Williams, Roger L. 2014 2014-05-29 PMC N PMC4046302 24876499.0 10.1126/science.1253397 nnpop7fm 0.667613 Clayton_2013, Greene_2012, Hurley_2014, UNKNOWN_1995, Jonker_2018 Sasaki_2011, Fulcher_2011
148 Bohnert_2013 SIN-dependent phosphoinhibition of formin multimerization controls fission yeast cytokinesis Bohnert, K. Adam; Grzegorzewska, Agnieszka P.; Willet, Alaina H.; Vander Kooi, Craig W.; Kovar, David R.; Gould, Kathleen L. 2013 2013-10-01 None N PMC3850099 24115772.0 10.1101/gad.224154.113 fgy1xdip 0.667495 Pereira_2018, Jonker_2018, Hurley_2014, Connelly_1996 Ji_W_2017, Saul_2019
149 Welsch_2009 Composition and Three-Dimensional Architecture of the Dengue Virus Replication and Assembly Sites Welsch, Sonja; Miller, Sven; Romero-Brey, Ines; Merz, Andreas; Bleck, Christopher K.E.; Walther, Paul; Fuller, Stephen D.; Antony, Claude; Krijnse-Locker, Jacomine; Bartenschlager, Ralf 2009 2009-04-23 None N PMC7103389 19380115.0 10.1016/j.chom.2009.03.007 vil2y9oo 0.667364 den_Boon_2010, Weissenhorn_2013, UNKNOWN_1995, Rice_1992 Neufeldt_2016
150 Jourdan_2012 An interactome map of the nucleocapsid protein from a highly pathogenic North American porcine reproductive and respiratory syndrome virus strain generated using SILAC‐based quantitative proteomics Jourdan, Stefanie S.; Osorio, Fernando; Hiscox, Julian A. 2012 2012-04-21 PMC N PMC7167637 22522808.0 10.1002/pmic.201100469 cd5vanvp 0.667313 Rice_1992, den_Boon_2010, Volmer_2010, Stork_2011, Meyerson_2017
151 Yasuda-Inoue_2013 Distinct DDX DEAD-box RNA helicases cooperate to modulate the HIV-1 Rev function Yasuda-Inoue, Mariko; Kuroki, Misao; Ariumi, Yasuo 2013 2013-05-17 PMC N PMC7092829 23608157.0 10.1016/j.bbrc.2013.04.016 xupvcbjm 0.667269 Stork_2011, Meyerson_2017, Pong_2011, Liu_H_2009 Ariumi_2014, Li_C_2013, Edgcomb_2012
152 Linnik_2013 Unraveling the Structure of Viral Replication Complexes at Super-Resolution Linnik, Olga; Liesche, Johannes; Tilsner, Jens; Oparka, Karl J. 2013 2013-01-31 COMM-USE N PMC3560349 23386855.0 10.3389/fpls.2013.00006 xkl42ue9 0.664357 den_Boon_2010, Rice_1992, Stork_2011, Terrier_2016, Compton_2014 Wulan_2015, Neufeldt_2016
153 Cann_2012 Chapter 4 Replication Cann, Alan J. 2012 2012-12-31 PMC N PMC7149686 10.1016/b978-0-12-384939-7.10004-3 s0bldxg9 0.663905 den_Boon_2010, Cann_2008, Hull_2014, Trobaugh_2017, Rice_1992 Wulan_2015, Netherton_2007, Bagga_2014
154 Baquero-Pérez_2015 Hsp70 Isoforms Are Essential for the Formation of Kaposi’s Sarcoma-Associated Herpesvirus Replication and Transcription Compartments Baquero-Pérez, Belinda; Whitehouse, Adrian 2015 2015-11-20 COMM-USE N PMC4654589 26587836.0 10.1371/journal.ppat.1005274 d62iuk72 0.663366 Yasuda-Inoue_2013, Greene_2012, Meyerson_2017, den_Boon_2010, Stork_2011 Walker_2016, Xin_S_2019
155 Fitzgerald_2013 Poliovirus infection induces the co-localization of cellular protein SRp20 with TIA-1, a cytoplasmic stress granule protein Fitzgerald, Kerry D.; Semler, Bert L. 2013 2013-09-30 None N PMC3742715 23830997.0 10.1016/j.virusres.2013.06.012 x1hisc0s 0.662852 Volmer_2010, Stoecklin_2012, Trobaugh_2017, Dubois_2016, Yasuda-Inoue_2013
156 Liang_2017 Chaperone-Mediated Autophagy Protein BAG3 Negatively Regulates Ebola and Marburg VP40-Mediated Egress Liang, Jingjing; Sagum, Cari A.; Bedford, Mark T.; Sidhu, Sachdev S.; Sudol, Marius; Han, Ziying; Harty, Ronald N. 2017 2017-01-11 COMM-USE N PMC5226679 28076420.0 10.1371/journal.ppat.1006132 l5kocy4f 0.662852 Ban_J_2018, Greene_2012, Meyerson_2017, Yasuda-Inoue_2013 Yan_J_2020, Phongphaew_2017, Zhang_2015
157 Klein_2011 Picornavirus Subversion of the Autophagy Pathway Klein, Kathryn A.; Jackson, William T. 2011 2011-08-26 COMM-USE N PMC3187694 21994795.0 10.3390/v3091549 v3w6eu5y 0.662757 Shi_J_2012, Taschuk_2020, Berkhout_2006, Mao_J_2019 Sun_D_2016, Lin_L_2010, Ding_2017
158 Doyle_2018 Infectious Bronchitis Virus Nonstructural Protein 4 Alone Induces Membrane Pairing Doyle, Nicole; Neuman, Benjamin W.; Simpson, Jennifer; Hawes, Philippa C.; Mantell, Judith; Verkade, Paul; Alrashedi, Hasan; Maier, Helena J. 2018 2018-09-06 COMM-USE N PMC6163833 30200673.0 10.3390/v10090477 3uidpr79 0.662529 Volmer_2010, den_Boon_2010, Compton_2014, Rice_1992, Yasuda-Inoue_2013 Kanjanahaluethai_2007, Zhang_2015
159 Dou_D_2018 Influenza A Virus Cell Entry, Replication, Virion Assembly and Movement Dou, Dan; Revol, Rebecca; Östbye, Henrik; Wang, Hao; Daniels, Robert 2018 2018-07-20 COMM-USE N PMC6062596 30079062.0 10.3389/fimmu.2018.01581 a3f4l6iu 0.660790 den_Boon_2010, Trobaugh_2017, Rice_1992, Volmer_2010 Wulan_2015, Neufeldt_2016, Giorda_2013
160 De_Haan_2006 Hosting the severe acute respiratory syndrome coronavirus: specific cell factors required for infection De Haan, Cornelis A. M.; Rottier, Peter J. M. 2006 2006-06-27 PMC N PMC7162409 16803585.0 10.1111/j.1462-5822.2006.00744.x bpuyrsza 0.659399 Shi_J_2012, Berkhout_2006, Rivas_2016, Cheng_2014, Trobaugh_2017
161 Bagga_2014 Cell Cycle Regulation During Viral Infection Bagga, Sumedha; Bouchard, Michael J. 2014 2014-03-27 PMC N PMC7122065 24906315.0 10.1007/978-1-4939-0888-2_10 nrh3lv1a 0.659288 Trobaugh_2017, Berkhout_2006, den_Boon_2010, Mao_J_2019 Emmett_2005, Galluzzi_2008, Giorda_2013
162 Sinigalia_2012 The Human Cytomegalovirus DNA Polymerase Processivity Factor UL44 Is Modified by SUMO in a DNA-Dependent Manner Sinigalia, Elisa; Alvisi, Gualtiero; Segré, Chiara V.; Mercorelli, Beatrice; Muratore, Giulia; Winkler, Michael; Hsiao, He-Hsuan; Urlaub, Henning; Ripalti, Alessandro; Chiocca, Susanna; Palù, Giorgio; Loregian, Arianna 2012 2012-11-15 COMM-USE N PMC3499415 23166733.0 10.1371/journal.pone.0049630 ckpg9f97 0.658573 Meyerson_2017, Yasuda-Inoue_2013, Stork_2011, Blank_2017, Kang_2009 Nowak_1984, Sun_D_2016
163 Trejo-Cerro_2019 The actin cytoskeleton is important for rotavirus internalization and RNA genome replication Trejo-Cerro, Oscar; Aguilar-Hernández, Nayeli; Silva-Ayala, Daniela; López, Susana; Arias, Carlos F. 2019 2019-04-02 PMC N 30639190.0 10.1016/j.virusres.2019.01.003 zsceg4cl 0.658270 Greene_2012, Meyerson_2017, Kumar_2016, Volmer_2010
164 Reggiori_2011 Unconventional Use of LC3 by Coronaviruses through the Alleged Subversion of the ERAD Tuning Pathway Reggiori, Fulvio; de Haan, Cornelis A.M.; Molinari, Maurizio 2011 2011-09-05 COMM-USE N PMC3187687 21994798.0 10.3390/v3091610 wwiay5jm 0.657893 Denison_2008, Klein_2011, Berkhout_2006, Lester_2014, Shi_J_2012 Case_2017, Sun_D_2016
165 Gout_2010 Co‐chaperone BAG3 and adenovirus penton base protein partnership Gout, E.; Gutkowska, M.; Takayama, S.; Reed, J.C.; Chroboczek, J. 2010 2010-07-06 PMC N PMC7166384 20607728.0 10.1002/jcb.22756 lweiwh3p 0.657510 Ban_J_2018, Meyerson_2017, Greene_2012, Volmer_2010, Yasuda-Inoue_2013
166 Reineke_2011 Animal virus schemes for translation dominance Reineke, Lucas C; Lloyd, Richard E 2011 2011-11-30 None N PMC3272495 22319551.0 10.1016/j.coviro.2011.10.009 5jnuhpp9 0.656430 Trobaugh_2017, Rice_1992, den_Boon_2010, Yasuda-Inoue_2013 Roberts_2009, Guerrero_2015
167 Sharma_2014 Influenza A viral nucleoprotein interacts with cytoskeleton scaffolding protein α‐actinin‐4 for viral replication Sharma, Shipra; Mayank, Adarsh K.; Nailwal, Himani; Tripathi, Shashank; Patel, Jenish R.; Bowzard, John B.; Gaur, Pratibha; Donis, Ruben O.; Katz, Jacqueline M.; Cox, Nancy J.; Lal, Renu B.; Farooqi, Humaira; Sambhara, Suryaprakash; Lal, Sunil K. 2014 2014-06-02 PMC N PMC7164065 24802111.0 10.1111/febs.12828 ql6bdnkw 0.655793 Volmer_2010, Li_C_2013, Ban_J_2018, Meyerson_2017, Kang_2009
168 Calistri_2014 The Ubiquitin-Conjugating System: Multiple Roles in Viral Replication and Infection Calistri, Arianna; Munegato, Denis; Carli, Ilaria; Parolin, Cristina; Palù, Giorgio 2014 2014-05-06 COMM-USE N PMC4092849 24805990.0 10.3390/cells3020386 qcx5ehnh 0.653027 Berkhout_2006, Viswanathan_2010, Taschuk_2020, Wilson_2012, Klein_2011 van_Tol_2017, Wimmer_2015, Bailey-Elkin_2017, Gustin_2011
169 Netherton_2007 A Guide to Viral Inclusions, Membrane Rearrangements, Factories, and Viroplasm Produced During Virus Replication Netherton, Christopher; Moffat, Katy; Brooks, Elizabeth; Wileman, Thomas 2007 2007-12-31 PMC N PMC7112299 17765705.0 10.1016/s0065-3527(07)70004-0 7gpije5d 0.652743 den_Boon_2010, Mao_J_2019, Rice_1992, Compton_2014, Berkhout_2006 Wulan_2015, Bagga_2014, Neufeldt_2016
170 Larson_2019 EPS8 facilitates uncoating of influenza A virus Gloria P. Larson; Vy Tran; Shuǐqìng Yú; Yíngyún Caì; Christina A. Higgins; Danielle M. Smith; Steven F. Baker; Sheli R. Radoshitzky; Jens H. Kuhn; Andrew Mehle 2019 2019-03-28 BioRxiv N 10.1101/592485 muq5rkaa 0.651683 Meyerson_2017, Ban_J_2018, Trobaugh_2017, Li_C_2014, Yasuda-Inoue_2013 Popescu_2011
171 Trobaugh_2017 MicroRNA Regulation of RNA Virus Replication and Pathogenesis Trobaugh, Derek W.; Klimstra, William B. 2017 2017-01-31 None N PMC5836316 27989642.0 10.1016/j.molmed.2016.11.003 sblrsi6y 0.650980 Herbert_2016, Rice_1992, Haasnoot_2010, Berkhout_2006 Moens_2009, Haasnoot_2010, Trypsteen_2016, Poltronieri_2015
172 Strating_2013 Cholesterol: fa(s)t-food for enterovirus genome replication Strating, Jeroen R.P.; van der Schaar, Hilde M.; van Kuppeveld, Frank J.M. 2013 2013-11-30 PMC N PMC7125759 24103385.0 10.1016/j.tim.2013.09.007 8gd73q0h 0.650766 den_Boon_2010, Weissenhorn_2013, Mao_J_2019, Rice_1992 Sun_D_2016, Mainou_2012
173 Omel’yanchuk_2011 Drosophila melanogaster as a model for studying the function of animal viral proteins Omel’yanchuk, L. V.; Yudina, O. S. 2011 2011-07-16 PMC N PMC7088594 10.1134/s1022795411040090 nb4437qs 0.650497 Berkhout_2006, Rice_1992, Trobaugh_2017, Haasnoot_2010, Volmer_2010 Hughes_2012, Wu_H_2004, van_der_Linden_2014
174 Ploubidou_2000 Vaccinia virus infection disrupts microtubule organization and centrosome function Ploubidou, Aspasia; Moreau, Violaine; Ashman, Keith; Reckmann, Inge; González, Cayetano; Way, Michael 2000 2000-08-01 PMC N PMC306617 10921875.0 10.1093/emboj/19.15.3932 mcuixluu 0.650292 Volmer_2010, den_Boon_2010, Greene_2012, UNKNOWN_1995 Zhang_2015, Wulan_2015, Fulcher_2011
175 You_J_2008 A model for the dynamic nuclear/nucleolar/cytoplasmic trafficking of the porcine reproductive and respiratory syndrome virus (PRRSV) nucleocapsid protein based on live cell imaging You, Jae-Hwan; Howell, Gareth; Pattnaik, Asit K.; Osorio, Fernando A.; Hiscox, Julian A. 2008 2008-08-15 PMC N PMC7103367 18550142.0 10.1016/j.virol.2008.04.037 hx2rsi91 0.648616 Volmer_2010, Shi_S_2000, Narayanan_2003, Yasuda-Inoue_2013, Brunner_2010 Wulan_2015
176 Li_Z_2018 Cellular hnRNP A1 Interacts with Nucleocapsid Protein of Porcine Epidemic Diarrhea Virus and Impairs Viral Replication Li, Zhonghua; Zeng, Wei; Ye, Shiyi; Lv, Jian; Nie, Axiu; Zhang, Bingzhou; Sun, Yumei; Han, Heyou; He, Qigai 2018 2018-03-13 COMM-USE N PMC5869520 29534017.0 10.3390/v10030127 prgorr3d 0.644980 Shi_S_2000, Volmer_2010, Li_C_2013, Yasuda-Inoue_2013 Zhang_2015
177 Rampersad_2018 Chapter 3 Replication and Expression Strategies of Viruses Rampersad, Sephra; Tennant, Paula 2018 2018-12-31 PMC N PMC7158166 10.1016/b978-0-12-811257-1.00003-6 tvdx9gkk 0.643784 den_Boon_2010, Trobaugh_2017, Berkhout_2006, Hull_2014, Haasnoot_2010 Bagga_2014, Giorda_2013, Netherton_2007, Wulan_2015
178 Zhang_2015 Identification of the interaction between vimentin and nucleocapsid protein of transmissible gastroenteritis virus Zhang, Xin; Shi, HongYan; Chen, JianFei; Shi, Da; Dong, Hui; Feng, Li 2015 2015-03-16 PMC N PMC7114421 25533531.0 10.1016/j.virusres.2014.12.013 wrztpeb8 0.641815 Meyerson_2017, Volmer_2010, Shi_S_2005, Trobaugh_2017, Rice_1992 Guo_Y_2003, Loa_C_2004, Sun_D_2016
179 Alcami_2000 Viral mechanisms of immune evasion Alcami, Antonio; Koszinowski, Ulrich H. 2000 2000-09-01 PMC N PMC7141564 10954870.0 10.1016/s1357-4310(00)01775-5 504kr50e 0.641554 Alcami_2000, Alcami_2000, Lester_2014, Denison_2008 Alcami_2000, Alcami_2000, Galluzzi_2008, Watanabe_2019
180 Romero-Brey_2012 Three-Dimensional Architecture and Biogenesis of Membrane Structures Associated with Hepatitis C Virus Replication Romero-Brey, Inés; Merz, Andreas; Chiramel, Abhilash; Lee, Ji-Young; Chlanda, Petr; Haselman, Uta; Santarella-Mellwig, Rachel; Habermann, Anja; Hoppe, Simone; Kallis, Stephanie; Walther, Paul; Antony, Claude; Krijnse-Locker, Jacomine; Bartenschlager, Ralf 2012 2012-12-06 COMM-USE N PMC3516559 23236278.0 10.1371/journal.ppat.1003056 nly4gqxq 0.640886 Volmer_2010, den_Boon_2010, Hobman_1993, Quiner_2010, Weissenhorn_2013 Neufeldt_2016, Ferraris_2012
181 Zhao_2017 Yeast for virus research Zhao, Richard Yuqi 2017 2017-09-18 COMM-USE N PMC5657823 29082230.0 10.15698/mic2017.10.592 cxijck5d 0.640886 Rice_1992, den_Boon_2010, Berkhout_2006, Taschuk_2020, Li_Z_2011 Bagga_2014, Andréola_2012, Wulan_2015
182 Shi_S_2005 Viral and Cellular Proteins Involved in Coronavirus Replication Shi, S. T.; Lai, M. M. C. 2005 2005-01-01 PMC N PMC7121242 15609510.0 10.1007/3-540-26765-4_4 10jlzjf0 0.640339 Yasuda-Inoue_2013, Stork_2011, Meyerson_2017, den_Boon_2010 Bhullar_2014
183 Pyle_2011 RNA helicases and remodeling proteins Pyle, Anna Marie 2011 2011-10-31 PMC N 21862383.0 10.1016/j.cbpa.2011.07.019 zxnmylkw 0.638805 Taschuk_2020, Dubois_2016, Blank_2017, Yasuda-Inoue_2013
184 El_Motiam_2019 SUMO and Cytoplasmic RNA Viruses: From Enemies to Best Friends El Motiam, Ahmed; Vidal, Santiago; Seoane, Rocío; Bouzaher, Yanis H.; González-Santamaría, José; Rivas, Carmen 2019 2019-12-24 PMC N PMC7144409 32274761.0 10.1007/978-3-030-38266-7_11 mcesial4 0.638406 Blank_2017, Yasuda-Inoue_2013, Martín-Vicente_2017, Taschuk_2020 Wimmer_2015, van_Tol_2017, Zhang_2015, Neufeldt_2016
185 Tang_2018 Pleiotropic roles of the ubiquitin-proteasome system during viral propagation Tang, Qi; Wu, Peng; Chen, Huiqing; Li, Guohui 2018 2018-08-15 PMC N PMC7094228 29913185.0 10.1016/j.lfs.2018.06.014 ttc9oxgs 0.637003 Viswanathan_2010, Greene_2012, Meyerson_2017, Bailey-Elkin_2017 van_Tol_2017, Bailey-Elkin_2017, Luo_H_2010, Wimmer_2015
186 Souza_2019 Killing two birds with one stone: How do Plant Viruses Break Down Plant Defenses and Manipulate Cellular Processes to Replicate Themselves? Souza, Pedro Filho Noronha; Carvalho, Fabricio Eulálio Leite 2019 2019-05-27 PMC N PMC7090608 10.1007/s12374-019-0056-8 gabr03sm 0.636259 Lester_2014, Mao_J_2019, Berkhout_2006, Shi_J_2012, Kindler_2014 Bagga_2014, Galluzzi_2008, Garcia_2014, Berkhout_2006
187 Nan_H_2018 The Network of Interactions Among Porcine Reproductive and Respiratory Syndrome Virus Non-structural Proteins Nan, Hao; Lan, Jixun; Tian, Mengmeng; Dong, Shan; Tian, Jiao; Liu, Long; Xu, Xiaodong; Chen, Hongying 2018 2018-05-14 COMM-USE N PMC5960727 29867873.0 10.3389/fmicb.2018.00970 zd3ld539 0.636237 den_Boon_2010, Yasuda-Inoue_2013, Stork_2011, Pong_2011, Rice_1992 Zhang_2015
188 Subramani_2013 Non-autophagic roles of autophagy-related proteins Subramani, Suresh; Malhotra, Vivek 2013 2013-01-22 PMC N PMC3566844 23337627.0 10.1038/embor.2012.220 06tmebvv 0.636180 Hurley_2014, Jang_2019, Shi_J_2012, Rytkönen_2007 Tanida_2004, Jacomin_2018, Espert_2007, Cheng_2014
189 Robinson_2018 Viral journeys on the intracellular highways Robinson, Makeda; Schor, Stanford; Barouch-Bentov, Rina; Einav, Shirit 2018 2018-07-24 PMC N PMC6151136 30043139.0 10.1007/s00018-018-2882-0 w9i9pgt4 0.635359 Lester_2014, Shi_J_2012, Kim_S_2018, Rajsbaum_2013 Giorda_2013, Watanabe_2019, Lin_L_2010
190 Cong_2017 The Interaction between Nidovirales and Autophagy Components Cong, Yingying; Verlhac, Pauline; Reggiori, Fulvio 2017 2017-07-11 COMM-USE N PMC5537674 28696396.0 10.3390/v9070182 qnn9hp8e 0.635089 Klein_2011, Shi_J_2012, Taschuk_2020, Berkhout_2006, den_Boon_2010 Lin_L_2010, Huang_2019, Ávila-Pérez_2019
191 Wang_2012 The R-rich motif of Beet black scorch virus P7a movement protein is important for the nuclear localization, nucleolar targeting and viral infectivity Wang, Xiaohui; Zhang, Yanjing; Xu, Jin; Shi, Lindan; Fan, Huiyan; Han, Chenggui; Li, Dawei; Yu, Jialin 2012 2012-08-31 PMC N 10.1016/j.virusres.2012.05.001 p9kwqle8 0.634618 Yasuda-Inoue_2013, Volmer_2010, Greene_2012, Shi_S_2000
192 Abernathy_2015 Emerging roles for RNA degradation in viral replication and antiviral defense Abernathy, Emma; Glaunsinger, Britt 2015 2015-05-31 PMC N PMC4424162 25721579.0 10.1016/j.virol.2015.02.007 dkwcheu0 0.634618 Trobaugh_2017, Herbert_2016, Haasnoot_2010, Berkhout_2006 Gaucherand_2019, Chemudupati_2019, Masaki_2015
193 Emmott_2008 Viral nucleolar localisation signals determine dynamic trafficking within the nucleolus Emmott, Edward; Dove, Brian K.; Howell, Gareth; Chappell, Lucy A.; Reed, Mark L.; Boyne, James R.; You, Jae-Hwan; Brooks, Gavin; Whitehouse, Adrian; Hiscox, Julian A. 2008 2008-10-25 None N PMC7103397 18775548.0 10.1016/j.virol.2008.05.032 ifye7yqk 0.634191 Volmer_2010, Yasuda-Inoue_2013, Greene_2012, den_Boon_2010, Rice_1992 Fulcher_2011, Wulan_2015, Zhang_2015, Jarboui_2012
194 Guo_H_2009 Characterization of the nuclear and nucleolar localization signals of bovine herpesvirus-1 infected cell protein 27 Guo, Hong; Ding, Qiong; Lin, Fusen; Pan, Weiwei; Lin, Jianyin; Zheng, Alan C. 2009 2009-11-30 PMC N PMC7125963 19682510.0 10.1016/j.virusres.2009.07.024 74i0v86g 0.633977 Volmer_2010, UNKNOWN_1993, UNKNOWN_1993, UNKNOWN_1993 Mou_C_2019
195 Singh_2018 Chapter 7 Cellular RNA Helicases Support Early and Late Events in Retroviral Replication Singh, Gatikrushna; Heng, Xiao; Boris-Lawrie, Kathleen 2018 2018-12-31 PMC N PMC7149973 10.1016/b978-0-12-811185-7.00007-8 tvs1pnib 0.633488 Rice_1992, Yasuda-Inoue_2013, den_Boon_2010, Stork_2011, Meyerson_2017 Diaz_2012, Jeang_2006, Wulan_2015
196 Narayanan_2013 Interplay between viruses and host mRNA degradation Narayanan, Krishna; Makino, Shinji 2013 2013-07-31 None N PMC3632658 23274304.0 10.1016/j.bbagrm.2012.12.003 685ro9u0 0.633138 Trobaugh_2017, Herbert_2016, Berkhout_2006, Shi_J_2012 Abernathy_2015, Gaucherand_2019, Berkhout_2006
197 Kedersha_2009 Chapter 4 Regulation of Translation by Stress Granules and Processing Bodies Kedersha, Nancy; Anderson, Paul 2009 2009-12-31 PMC N PMC7102815 20374741.0 10.1016/s1877-1173(09)90004-7 8vrcwwll 0.633071 Stoecklin_2012, Dubois_2016, Hurley_2014, Emmott_2009, Brown_2008 Stoecklin_2012, Thomas_2011
198 de_Castro_2012 Virus factories: biogenesis and structural design de Castro, Isabel Fernández; Volonté, Luca; Risco, Cristina 2012 2012-10-04 PMC N PMC7162364 22978691.0 10.1111/cmi.12029 orr2roxz 0.632390 den_Boon_2010, Denison_2008, Weissenhorn_2013, UNKNOWN_2004, Tessier_2019
199 Valiente-Echeverría_2012 Viral modulation of stress granules Valiente-Echeverría, Fernando; Melnychuk, Luca; Mouland, Andrew J. 2012 2012-11-30 PMC N PMC7114395 22705970.0 10.1016/j.virusres.2012.06.004 8eu6wp9b 0.631192 Shi_J_2012, Lester_2014, Berkhout_2006, Mao_J_2019, Potgieter_1986 Montero_2011, Miller_2011
200 Marsh_2006 Virus Entry: Open Sesame Marsh, Mark; Helenius, Ari 2006 2006-02-24 PMC N PMC7112260 16497584.0 10.1016/j.cell.2006.02.007 8rl4kswe 0.631056 Denison_2008, UNKNOWN_2004, Cullen_2009, Alcami_2000 Giorda_2013, Mainou_2017, Sze_C_2015
201 Dorobantu_2015 Modulation of the Host Lipid Landscape to Promote RNA Virus Replication: The Picornavirus Encephalomyocarditis Virus Converges on the Pathway Used by Hepatitis C Virus Dorobantu, Cristina M.; Albulescu, Lucian; Harak, Christian; Feng, Qian; van Kampen, Mirjam; Strating, Jeroen R. P. M.; Gorbalenya, Alexander E.; Lohmann, Volker; van der Schaar, Hilde M.; van Kuppeveld, Frank J. M. 2015 2015-09-25 COMM-USE N PMC4583462 26406250.0 10.1371/journal.ppat.1005185 andje0wu 0.630609 Yasuda-Inoue_2013, Ryu_W_2017, Meyerson_2017, den_Boon_2010, Rice_1992 Neufeldt_2016, Sun_D_2016
202 Lai_M_2009 Functional interplay between viral and cellular SR proteins in control of post‐transcriptional gene regulation Lai, Ming‐Chih; Peng, Tsui‐Yi; Tarn, Woan‐Yuh 2009 2009-02-10 PMC N PMC7164074 19220464.0 10.1111/j.1742-4658.2009.06894.x llngs3v5 0.629304 Trobaugh_2017, Herbert_2016, Haasnoot_2010, Abernathy_2015, Yasuda-Inoue_2013
203 Jin_X_2018 Three-Dimensional Architecture and Biogenesis of Membrane Structures Associated with Plant Virus Replication Jin, Xuejiao; Cao, Xiuling; Wang, Xueting; Jiang, Jun; Wan, Juan; Laliberté, Jean-François; Zhang, Yongliang 2018 2018-01-30 COMM-USE N PMC5797596 29441085.0 10.3389/fpls.2018.00057 2h56vb0n 0.628204 den_Boon_2010, Trobaugh_2017, Berkhout_2006, Cullen_2009, Weissenhorn_2013 Grangeon_2012, Diaz_2012
204 Durmuş_2017 Comparative interactomics for virus–human protein–protein interactions: DNA viruses versus RNA viruses Durmuş, Saliha; Ülgen, Kutlu Ö. 2017 2017-01-04 COMM-USE N PMC5221455 28097092.0 10.1002/2211-5463.12167 sx1fyqw0 0.627673 Berkhout_2006, Trobaugh_2017, Kindler_2014, Lester_2014, Rice_1992 Chemudupati_2019, Wulan_2015, Zhang_2015
205 Reid_2015 The Virus-Host Interplay: Biogenesis of +RNA Replication Complexes Reid, Colleen R.; Airo, Adriana M.; Hobman, Tom C. 2015 2015-08-06 COMM-USE N PMC4576186 26287230.0 10.3390/v7082825 egh12cqb 0.625639 Ryu_W_2017, Rice_1992, Lu_P_2016, den_Boon_2010, Potgieter_1986 Neufeldt_2016, Chemudupati_2019, Diaz_2012
206 Lohmann_2013 Hepatitis C Virus RNA Replication Lohmann, Volker 2013 2013-03-06 PMC N PMC7122439 23463201.0 10.1007/978-3-642-27340-7_7 ijwvuy1l 0.620465 den_Boon_2010, Stork_2011, Rice_1992, Yasuda-Inoue_2013 Neufeldt_2016, Kazakov_2015, Masante_2015
207 Alves-Rodrigues_2006 Saccharomyces cerevisiae: A useful model host to study fundamental biology of viral replication Alves-Rodrigues, Isabel; Galão, Rui Pedro; Meyerhans, Andreas; Díez, Juana 2006 2006-09-30 PMC N PMC7114155 16698107.0 10.1016/j.virusres.2005.11.018 14z8g7pk 0.619424 Rice_1992, Wang_2018, Berkhout_2006, den_Boon_2010, Conzelmann_1996 Hughes_2012, Giorda_2013, Bagga_2014
208 Burrell_2017 Chapter 4 Virus Replication Burrell, Christopher J.; Howard, Colin R.; Murphy, Frederick A. 2017 2017-12-31 PMC N 10.1016/b978-0-12-375156-0.00004-7 fhvt1ht1 0.618902 Trobaugh_2017, den_Boon_2010, Berkhout_2006, Rice_1992, Herbert_2016
209 Yamauchi_2016 Principles of Virus Uncoating: Cues and the Snooker Ball Yamauchi, Yohei; Greber, Urs F. 2016 2016-03-31 PMC N PMC7169695 26875443.0 10.1111/tra.12387 tfp7ln6z 0.618902 Lester_2014, Mao_J_2019, Kindler_2014, Shi_J_2012, Cheng_2014
210 Biering_2017 Viral replication complexes are targeted by LC3-guided interferon-inducible GTPases Biering, Scott B.; Choi, Jayoung; Halstrom, Rachel A.; Brown, Hailey M.; Beatty, Wandy L.; Lee, Sanghyun; McCune, Broc T.; Dominici, Erin; Williams, Lelia E.; Orchard, Robert C.; Wilen, Craig B.; Yamamoto, Masahiro; Coers, Jörn; Taylor, Gregory A.; Hwang, Seungmin 2017 2017-07-01 PMC N PMC5591033 28669671.0 10.1016/j.chom.2017.06.005 8xuwhu2w 0.618393 Yasuda-Inoue_2013, Meyerson_2017, Ban_J_2018, Greene_2012, Dixit_2013 Neufeldt_2016, Case_2017
211 Wimmer_2015 Viral Mimicry to Usurp Ubiquitin and SUMO Host Pathways Wimmer, Peter; Schreiner, Sabrina 2015 2015-08-28 COMM-USE N PMC4584293 26343706.0 10.3390/v7092849 vy4hfd62 0.618053 Viswanathan_2010, Taschuk_2020, Bailey-Elkin_2017, Berkhout_2006, Trobaugh_2017 van_Tol_2017, Bailey-Elkin_2017, Deng_2019, Fung_2018
212 König_2015 Recent strategies and progress in identifying host factors involved in virus replication König, Renate; Stertz, Silke 2015 2015-08-31 PMC N 26112615.0 10.1016/j.mib.2015.06.001 cf336j6k 0.617480 Berkhout_2006, UNKNOWN_2004, Johnson_2018, Alcami_2000, Alcami_2000 Giorda_2013, Müller_2009, Meyers_2011, Bagga_2014
213 Melia_2018 The Origin, Dynamic Morphology, and PI4P-Independent Formation of Encephalomyocarditis Virus Replication Organelles Melia, C. E.; van der Schaar, H. M.; de Jong, A. W. M.; Lyoo, H. R.; Snijder, E. J.; Koster, A. J.; van Kuppeveld, F. J. M.; Bárcena, M. 2018 2018-04-17 COMM-USE N PMC5904412 29666283.0 10.1128/mbio.00420-18 zp5tz9pc 0.617377 den_Boon_2010, Volmer_2010, Rice_1992, Ryu_W_2017, V’kovski_2015 Sun_D_2016, Zhang_2015
214 Covarrubias_2011 Coordinated Destruction of Cellular Messages in Translation Complexes by the Gammaherpesvirus Host Shutoff Factor and the Mammalian Exonuclease Xrn1 Covarrubias, Sergio; Gaglia, Marta M.; Kumar, G. Renuka; Wong, Wesley; Jackson, Andrew O.; Glaunsinger, Britt A. 2011 2011-10-27 COMM-USE N PMC3203186 22046136.0 10.1371/journal.ppat.1002339 8aybjsq6 0.616930 Yasuda-Inoue_2013, Blank_2017, Ivanova_2015, Abernathy_2015 Sasvari_2011, Abernathy_2015
215 Raaben_2007 Mouse hepatitis coronavirus replication induces host translational shutoff and mRNA decay, with concomitant formation of stress granules and processing bodies Raaben, Matthijs; Groot Koerkamp, Marian J. A.; Rottier, Peter J. M.; De Haan, Cornelis A. M. 2007 2007-04-13 PMC N PMC7162177 17490409.0 10.1111/j.1462-5822.2007.00951.x tgp51aos 0.616750 Trobaugh_2017, Meyerson_2017, Herbert_2016, Yasuda-Inoue_2013, Berkhout_2006
216 Ivanova_2015 Alu RNA regulates the cellular pool of active ribosomes by targeted delivery of SRP9/14 to 40S subunits Ivanova, Elena; Berger, Audrey; Scherrer, Anne; Alkalaeva, Elena; Strub, Katharina 2015 2015-03-11 None N PMC4357698 25697503.0 10.1093/nar/gkv048 64cnoqpi 0.616608 Yasuda-Inoue_2013, Stork_2011, Blank_2017, Masaki_2015 Sasvari_2011
217 de_Breyne_2018 Focus on Translation Initiation of the HIV-1 mRNAs de Breyne, Sylvain; Ohlmann, Théophile 2018 2018-12-28 COMM-USE N PMC6337239 30597859.0 10.3390/ijms20010101 zz4w4jp3 0.614771 Yasuda-Inoue_2013, Trobaugh_2017, Abernathy_2015, Herbert_2016, Haasnoot_2010 Guerrero_2015, Sasvari_2011
218 Llano_2018 Chapter Seven Defining Pharmacological Targets by Analysis of Virus–Host Protein Interactions Llano, Manuel; Peña-Hernandez, Mario A. 2018 2018-12-31 PMC N PMC6322211 29459033.0 10.1016/bs.apcsb.2017.11.001 yzc4bosn 0.614345 Berkhout_2006, Mao_J_2019, Shi_J_2012, Lester_2014, Kindler_2014 Krumm_2011, A_Abdullah_2018, Teissier_2010, Watanabe_2019
219 Shi_J_2012 Interplay between the cellular autophagy machinery and positive-stranded RNA viruses Shi, Junyan; Luo, Honglin 2012 2012-02-16 PMC N PMC7110239 22343377.0 10.1093/abbs/gms010 om50o7pd 0.609790 Lester_2014, Kim_S_2018, Rajsbaum_2013, Mao_J_2019 Cheng_2014, Lin_L_2010, Lee_H_2008, Espert_2007
220 Carissimo_2019 VCP/p97 Is a Proviral Host Factor for Replication of Chikungunya Virus and Other Alphaviruses Carissimo, Guillaume; Chan, Yi-Hao; Utt, Age; Chua, Tze-Kwang; Bakar, Farhana Abu; Merits, Andres; Ng, Lisa F. P. 2019 2019-09-24 COMM-USE N PMC6787436 31636613.0 10.3389/fmicb.2019.02236 jj18fyaj 0.609778 Tallmadge_2008, Ryu_W_2017, Li_C_2014, Rice_1992 Yan_J_2020, Sun_D_2016, Phongphaew_2017
221 Salaun_2010 The intracellular dynamic of protein palmitoylation Salaun, Christine; Greaves, Jennifer; Chamberlain, Luke H. 2010 2010-12-27 NONCOMM N PMC3010063 21187327.0 10.1083/jcb.201008160 svn4e6w6 0.609128 Hurley_2014, Greene_2012, Pridgeon_2008, Cosson_2013 Sobocińska_2018, Tsukamoto_2013, UNKNOWN_1989
222 Isaacson_2009 Ubiquitination, Ubiquitin-like Modifiers, and Deubiquitination in Viral Infection Isaacson, Marisa K.; Ploegh, Hidde L. 2009 2009-06-18 PMC N PMC7103382 19527883.0 10.1016/j.chom.2009.05.012 5gbhobw8 0.608490 Klein_2011, Berkhout_2006, Trobaugh_2017, Meyerson_2017 Wimmer_2015, Bailey-Elkin_2017, Calistri_2014, van_Tol_2017
223 Heaton_2011 Dengue Virus and Autophagy Heaton, Nicholas S.; Randall, Glenn 2011 2011-08-04 COMM-USE N PMC3185800 21994782.0 10.3390/v3081332 w14finxf 0.608041 Weissenhorn_2013, Klein_2011, den_Boon_2010, Shi_J_2012 Ding_2017, Ávila-Pérez_2019
224 Hiscox_2010 Nucleolar proteomics and viral infection Hiscox, Julian A.; Whitehouse, Adrian; Matthews, David A. 2010 2010-07-19 PMC N PMC7167898 20661956.0 10.1002/pmic.201000251 1ci6rjot 0.607589 Trobaugh_2017, Berkhout_2006, Shi_J_2012, den_Boon_2010
225 Gray_1996 Plant virus proteins involved in natural vector transmission Gray, Stewart M. 1996 1996-07-31 PMC N 8829333.0 10.1016/0966-842x(96)10040-8 pl88otue 0.607246 Rice_1992, Tallmadge_2008, Compton_2014, den_Boon_2010 Rott_1987, Wu_H_2004, Giorda_2013
226 de_Haan_2005 Molecular Interactions in the Assembly of Coronaviruses de Haan, Cornelis A.M.; Rottier, Peter J.M. 2005 2005-12-31 PMC N PMC7112327 16139595.0 10.1016/s0065-3527(05)64006-7 230p8rsf 0.607202 Weissenhorn_2013, den_Boon_2010, Hobman_1993, Tessier_2019, Roman_1985 Rott_1987, Sun_D_2016, Zhang_2015
227 Ferraris_2012 Sequential biogenesis of host cell membrane rearrangements induced by hepatitis C virus infection Ferraris, Pauline; Beaumont, Elodie; Uzbekov, Rustem; Brand, Denys; Gaillard, Julien; Blanchard, Emmanuelle; Roingeard, Philippe 2012 2012-11-25 PMC N PMC4901162 23184194.0 10.1007/s00018-012-1213-0 wsxlw6u4 0.606892 den_Boon_2010, Volmer_2010, Quiner_2010, Welsch_2009, Narayanan_2003 Neufeldt_2016, Doyle_2018, Wulan_2015
228 Royall_2015 Murine Norovirus 1 (MNV1) Replication Induces Translational Control of the Host by Regulating eIF4E Activity during Infection Royall, Elizabeth; Doyle, Nicole; Abdul-Wahab, Azimah; Emmott, Ed; Morley, Simon J.; Goodfellow, Ian; Roberts, Lisa O.; Locker, Nicolas 2015 2015-02-20 COMM-USE N PMC4335213 25561727.0 10.1074/jbc.m114.602649 wsqc5rwp 0.606195 Meyerson_2017, Trobaugh_2017, Yasuda-Inoue_2013, Ban_J_2018, Kumar_2016 Sasvari_2011
229 Guerrero_2015 HIV-1 Replication and the Cellular Eukaryotic Translation Apparatus Guerrero, Santiago; Batisse, Julien; Libre, Camille; Bernacchi, Serena; Marquet, Roland; Paillart, Jean-Christophe 2015 2015-01-19 COMM-USE N PMC4306834 25606970.0 10.3390/v7010199 yozk08w4 0.603769 Yasuda-Inoue_2013, Trobaugh_2017, Stork_2011, Meyerson_2017 de_Breyne_2018, Sasvari_2011
230 Papa_2019 Recombinant Rotaviruses Rescued by Reverse Genetics Reveal the Role of NSP5 Hyperphosphorylation in the Assembly of Viral Factories Papa, Guido; Venditti, Luca; Arnoldi, Francesca; Schraner, Elisabeth M.; Potgieter, Christiaan; Borodavka, Alexander; Eichwald, Catherine; Burrone, Oscar R. 2019 2019-12-12 COMM-USE N PMC6912106 31619556.0 10.1128/jvi.01110-19 zaeg1ujv 0.603473 Volmer_2010, den_Boon_2010, Meyerson_2017, Stork_2011, Rice_1992 Papa_2019, Brockway_2005
231 Ni_P_2013 Non-encapsidation activities of the capsid proteins of positive-strand RNA viruses Ni, Peng; Cheng Kao, C. 2013 2013-11-30 PMC N PMC3818703 24074574.0 10.1016/j.virol.2013.07.023 qv3ne8cm 0.601153 den_Boon_2010, Rice_1992, Trobaugh_2017, Stork_2011, Taschuk_2020 Diaz_2012, Wulan_2015, Sun_D_2016
232 Kaur_2020 The multifarious roles of heterogeneous ribonucleoprotein A1 in viral infections Kaur, Ramandeep; Lal, Sunil K. 2020 2020-01-27 PMC N PMC7169068 31989716.0 10.1002/rmv.2097 tvpw56x6 0.600499 Potgieter_1986, Rice_1992, Trobaugh_2017, den_Boon_2010, Berkhout_2006
233 Meyers_2011 Viral RNase Involvement in Strategies of Infection Meyers, Gregor; Rümenapf, Tillmann; Ziebuhr, John 2011 2011-07-12 PMC N PMC7120235 10.1007/978-3-642-21078-5_6 4s0keus5 0.598772 den_Boon_2010, Rice_1992, Trobaugh_2017, Herbert_2016, Berkhout_2006 Sun_D_2016, Wulan_2015
234 Zhou_2011 Viral proteomics: The emerging cutting-edge of virus research Zhou, ShengTao; Liu, Rui; Zhao, Xia; Huang, CanHua; Wei, YuQuan 2011 2011-06-26 NONCOMM N PMC7089374 21706410.0 10.1007/s11427-011-4177-7 3ahamzjv 0.598639 Trobaugh_2017, Rice_1992, Berkhout_2006, Herbert_2016, den_Boon_2010 Watanabe_2019, Zhang_2015, Vigerust_2011, Ding_2012
235 Huang_2019 The interplay of autophagy and enterovirus Huang, Lihong; Yue, Jianbo 2019 2019-09-25 PMC N 10.1016/j.semcdb.2019.08.001 kmiybuxu 0.596872 Shi_J_2012, Mao_J_2019, Potgieter_1986, Berkhout_2006, Klein_2011 Lin_L_2010, Ding_2017, Espert_2007
236 Montero_2011 Stress Granules in the Viral Replication Cycle Montero, Hilda; Trujillo-Alonso, Vicenta 2011 2011-11-18 COMM-USE N PMC3230854 22163347.0 10.3390/v3112328 9a56rr1j 0.595881 Berkhout_2006, Trobaugh_2017, Meyerson_2017, den_Boon_2010, Herbert_2016 Miller_2011
237 Popescu_2011 NS2 Protein of Hepatitis C Virus Interacts with Structural and Non-Structural Proteins towards Virus Assembly Popescu, Costin-Ioan; Callens, Nathalie; Trinel, Dave; Roingeard, Philippe; Moradpour, Darius; Descamps, Véronique; Duverlie, Gilles; Penin, François; Héliot, Laurent; Rouillé, Yves; Dubuisson, Jean 2011 2011-02-10 COMM-USE N PMC3037360 21347350.0 10.1371/journal.ppat.1001278 cz42gvhy 0.594858 Volmer_2010, Kang_2009, Pong_2011, Yasuda-Inoue_2013 Zhang_2015, Neufeldt_2016, Masante_2015
238 Bansal_2020 An interaction network of RNA-binding proteins involved in Drosophila oogenesis Prashali Bansal; Johannes Madlung; Kristina Schaaf; Boris Macek; Fulvia Bono 2020 2020-01-09 BioRxiv N 10.1101/2020.01.08.899146 2f9nc2to 0.594797 Trobaugh_2017, Blank_2017, Haasnoot_2010, Dubois_2016 Zhang_2015, Järvelin_2016, Li_Z_2009, Choudhury_2017
239 Subramani_2018 Host-Virus Protein Interaction Network Reveals the Involvement of Multiple Host Processes in the Life Cycle of Hepatitis E Virus Subramani, Chandru; Nair, Vidya P.; Anang, Saumya; Mandal, Sukhen Das; Pareek, Madhu; Kaushik, Nidhi; Srivastava, Akriti; Saha, Sudipto; Shalimar,; Nayak, Baibaswata; Ranjith-Kumar, C. T.; Surjit, Milan 2018 2018-01-23 COMM-USE N PMC5781259 29404423.0 10.1128/msystems.00135-17 5q3ojfmc 0.593042 Trobaugh_2017, Berkhout_2006, Shi_J_2012, Haasnoot_2010, Lester_2014 Neufeldt_2016, Popescu_2011, Zhang_2015, Vigerust_2011
240 Bonamassa_2015 Hepatitis C virus and host cell nuclear transport machinery: a clandestine affair Bonamassa, Barbara; Ciccarese, Francesco; Antonio, Veronica Di; Contarini, Andrea; Palù, Giorgio; Alvisi, Gualtiero 2015 2015-06-19 COMM-USE N PMC4472997 26150811.0 10.3389/fmicb.2015.00619 ysrs0w40 0.591951 den_Boon_2010, Volmer_2010, Trobaugh_2017, Greene_2012, Yasuda-Inoue_2013 Neufeldt_2016, Wulan_2015, Fulcher_2011, Zhang_2015
241 Kim_S_2018 The essential role of mitochondrial dynamics in antiviral immunity Kim, Seong-Jun; Ahn, Dae-Gyun; Syed, Gulam H.; Siddiqui, Aleem 2018 2018-07-31 PMC N PMC5988924 29246869.0 10.1016/j.mito.2017.11.007 vvyul140 0.591256 Lester_2014, Mao_J_2019, Shi_J_2012, Rajsbaum_2013 Lin_L_2010, Galluzzi_2008, Cheng_2014, Lai_J_2018
242 van_der_Hoeven_2016 Biogenesis and architecture of arterivirus replication organelles van der Hoeven, Barbara; Oudshoorn, Diede; Koster, Abraham J.; Snijder, Eric J.; Kikkert, Marjolein; Bárcena, Montserrat 2016 2016-07-15 PMC N PMC7111217 27071852.0 10.1016/j.virusres.2016.04.001 3fyyabm0 0.590820 den_Boon_2010, Rice_1992, Volmer_2010, Ryu_W_2017, Compton_2014 Wulan_2015, Melia_2018
243 Pierini_2009 Modulation of membrane traffic between endoplasmic reticulum, ERGIC and Golgi to generate compartments for the replication of bacteria and viruses Pierini, Roberto; Cottam, Eleanor; Roberts, Rebecca; Wileman, Thomas 2009 2009-09-30 PMC N PMC7110581 19508853.0 10.1016/j.semcdb.2009.03.015 qy8vj6uu 0.590057 Weissenhorn_2013, Hurley_2014, UNKNOWN_1995, den_Boon_2010 Grangeon_2012, Neufeldt_2016, Salcedo_2003, Tenorio_2018
244 Li_Z_2010 Translation Elongation Factor 1A Facilitates the Assembly of the Tombusvirus Replicase and Stimulates Minus-Strand Synthesis Li, Zhenghe; Pogany, Judit; Tupman, Steven; Esposito, Anthony M.; Kinzy, Terri Goss; Nagy, Peter D. 2010 2010-11-04 COMM-USE N PMC2973826 21079685.0 10.1371/journal.ppat.1001175 zpk3gjwo 0.589478 Stork_2011, den_Boon_2010, Yasuda-Inoue_2013, Rice_1992 Sasvari_2011, Li_Z_2009, Wang_2009
245 Gaglia_2010 Viruses and the cellular RNA decay machinery Gaglia, Marta Maria; Glaunsinger, Britt A. 2010 2010-05-06 PMC N PMC7169783 21956906.0 10.1002/wrna.3 qhr6iir6 0.589478 Berkhout_2006, Trobaugh_2017, Haasnoot_2010, Herbert_2016, Shi_J_2012
246 Milev_2018 10 Impacts of virus-mediated manipulation of host Dynein Milev, Miroslav P.; Yao, Xaojian; Berthoux, Lionel; Mouland, Andrew J. 2018 2018-12-31 PMC N PMC7150161 10.1016/b978-0-12-809470-9.00010-2 91qwbslx 0.589077 Berkhout_2006, Kim_S_2018, Shi_J_2012, Denison_2008, Mao_J_2019 Mouland_2012, Chemudupati_2019, Giorda_2013, Fulcher_2011
247 Mahon_2014 Cullin E3 Ligases and Their Rewiring by Viral Factors Mahon, Cathal; Krogan, Nevan J.; Craik, Charles S.; Pick, Elah 2014 2014-10-13 COMM-USE N PMC4279162 25314029.0 10.3390/biom4040897 nnebnagr 0.588780 Viswanathan_2010, Bailey-Elkin_2017, Lester_2014, Taschuk_2020, Shi_J_2012 van_Tol_2017, Viswanathan_2010, Wimmer_2015
248 Romero-Brey_2014 Membranous Replication Factories Induced by Plus-Strand RNA Viruses Romero-Brey, Inés; Bartenschlager, Ralf 2014 2014-07-22 COMM-USE N PMC4113795 25054883.0 10.3390/v6072826 aesiff1f 0.588477 Weissenhorn_2013, Volmer_2010, Hobman_1993, Tessier_2019, Dubois_2016 Diaz_2012, Harak_2015
249 Li_C_2014 Cellular DDX3 regulates Japanese encephalitis virus replication by interacting with viral un-translated regions Li, Chen; Ge, Ling-ling; Li, Peng-peng; Wang, Yue; Dai, Juan-juan; Sun, Ming-xia; Huang, Li; Shen, Zhi-qiang; Hu, Xiao-chun; Ishag, Hassan; Mao, Xiang 2014 2014-01-20 PMC N PMC7111930 24418539.0 10.1016/j.virol.2013.11.008 wwkdum94 0.587250 Yasuda-Inoue_2013, Li_C_2013, Meyerson_2017, Tallmadge_2008 Li_C_2013, Case_2017
250 Herbert_2016 A Tale of Two RNAs during Viral Infection: How Viruses Antagonize mRNAs and Small Non-Coding RNAs in The Host Cell Herbert, Kristina M.; Nag, Anita 2016 2016-06-02 COMM-USE N PMC4926174 27271653.0 10.3390/v8060154 btwn1jy0 0.586771 Trobaugh_2017, Rice_1992, Berkhout_2006, Gaucherand_2019 Gaucherand_2019, Abernathy_2015
251 Cann_2016 Chapter 4 Replication Cann, Alan J. 2016 2016-12-31 PMC N PMC7149640 10.1016/b978-0-12-801946-7.00004-3 2d9yu7jw 0.586300 Denison_2008, Berkhout_2006, Shi_J_2012, Hull_2014 Sun_D_2016, Mainou_2017
252 Jarboui_2012 Nucleolar Protein Trafficking in Response to HIV-1 Tat: Rewiring the Nucleolus Jarboui, Mohamed Ali; Bidoia, Carlo; Woods, Elena; Roe, Barbara; Wynne, Kieran; Elia, Giuliano; Hall, William W.; Gautier, Virginie W. 2012 2012-11-15 COMM-USE N PMC3499507 23166591.0 10.1371/journal.pone.0048702 o9fjpqaj 0.585918 Yasuda-Inoue_2013, Trobaugh_2017, Volmer_2010, Greene_2012, den_Boon_2010 Fulcher_2011, Arizala_2018, Wulan_2015
253 Sachse_2019 Chapter One The viral replication organelles within cells studied by electron microscopy Sachse, Martin; Fernández de Castro, Isabel; Tenorio, Raquel; Risco, Cristina 2019 2019-12-31 PMC N PMC7112055 31522702.0 10.1016/bs.aivir.2019.07.005 a64pbftg 0.585893 den_Boon_2010, Denison_2008, Weissenhorn_2013, Marsh_2006 Risco_2013, Rossignol_2015, Tenorio_2018
254 Xing_2010 Molecular anatomy of subcellular localization of HSV-1 tegument protein US11 in living cells Xing, Junji; Wu, Fuqing; Pan, Weiwei; Zheng, Chunfu 2010 2010-10-31 PMC N PMC7114396 20633584.0 10.1016/j.virusres.2010.07.009 cow1mhm9 0.585603 Volmer_2010, UNKNOWN_1993, Greene_2012, Yasuda-Inoue_2013, UNKNOWN_1993 Zhang_2015, UNKNOWN_1994, Fulcher_2011
255 Villanueva_2005 Interactions Between Virus Proteins and Host Cell Membranes During the Viral Life Cycle Villanueva, Rodrigo A.; Rouillé, Yves; Dubuisson, Jean 2005 2005-12-31 PMC N PMC7112339 16125548.0 10.1016/s0074-7696(05)45006-8 niddmbgp 0.584102 Weissenhorn_2013, den_Boon_2010, Volmer_2010, Roman_1985 Dumas_2014, Más_V_2013, Wulan_2015
256 Gordon_2019 Host and Viral Proteins Modulating Ebola and Marburg Virus Egress Gordon, Tamsin B.; Hayward, Joshua A.; Marsh, Glenn A.; Baker, Michelle L.; Tachedjian, Gilda 2019 2019-01-03 COMM-USE N PMC6357148 30609802.0 10.3390/v11010025 2l40gqk3 0.583258 den_Boon_2010, Mao_J_2019, Compton_2014, Klein_2011, Potgieter_1986 Sun_D_2016, Zhang_2015, Fulcher_2011
257 Angelini_2013 Severe Acute Respiratory Syndrome Coronavirus Nonstructural Proteins 3, 4, and 6 Induce Double-Membrane Vesicles Angelini, Megan M.; Akhlaghpour, Marzieh; Neuman, Benjamin W.; Buchmeier, Michael J. 2013 2013-08-13 NONCOMM N PMC3747587 23943763.0 10.1128/mbio.00524-13 yl1qyh7j 0.583258 Volmer_2010, den_Boon_2010, Greene_2012, Compton_2014 Doyle_2018, Kanjanahaluethai_2007, Neufeldt_2016
258 Li_M_2015 To translate, or not to translate: viral and host mRNA regulation by interferon-stimulated genes Li, Melody M.H.; MacDonald, Margaret R.; Rice, Charles M. 2015 2015-06-30 None N PMC4441850 25748385.0 10.1016/j.tcb.2015.02.001 tdmkph8r 0.583212 Trobaugh_2017, Herbert_2016, Haasnoot_2010, Berkhout_2006, Abernathy_2015 de_Breyne_2018, Sasvari_2011
259 Ravindran_2016 Opportunistic intruders: how viruses orchestrate ER functions to infect cells Ravindran, Madhu Sudhan; Bagchi, Parikshit; Cunningham, Corey Nathaniel; Tsai, Billy 2016 2016-06-06 None N PMC5272919 27265768.0 10.1038/nrmicro.2016.60 ddbybpv2 0.582252 Berkhout_2006, Shi_J_2012, Cheng_2014, Klein_2011, Trobaugh_2017 Giorda_2013, Lin_L_2010, Watanabe_2019
260 Ferron_2017 Transcription and replication mechanisms of Bunyaviridae and Arenaviridae L proteins Ferron, François; Weber, Friedemann; de la Torre, Juan Carlos; Reguera, Juan 2017 2017-04-15 PMC N PMC7114536 28137457.0 10.1016/j.virusres.2017.01.018 qb8vyn43 0.581423 den_Boon_2010, Rice_1992, Ryu_W_2017, Trobaugh_2017, Payne_2017 Sun_D_2016, Wulan_2015, Zhang_2015
261 Dreux_2011 Impact of the Autophagy Machinery on Hepatitis C Virus Infection Dreux, Marlène; Chisari, Francis V. 2011 2011-08-04 COMM-USE N PMC3185811 21994783.0 10.3390/v3081342 tzv2ntev 0.580776 Shi_J_2012, Berkhout_2006, Klein_2011, Cheng_2014, Mao_J_2019 Lee_H_2008, Lin_L_2010, Cheng_2014
262 Romero-Brey_2015 Viral Infection at High Magnification: 3D Electron Microscopy Methods to Analyze the Architecture of Infected Cells Romero-Brey, Inés; Bartenschlager, Ralf 2015 2015-12-03 COMM-USE N PMC4690864 26633469.0 10.3390/v7122940 d6ycc8ci 0.580776 Denison_2008, Cullen_2009, Marsh_2006, Weissenhorn_2013, den_Boon_2010 Sachse_2019, Fu_C_2011, Risco_2013, Giorda_2013
263 Wang_2009 A temperature sensitive mutant of heat shock protein 70 reveals an essential role during the early steps of tombusvirus replication Wang, Robert Yung-Liang; Stork, Jozsef; Pogany, Judit; Nagy, Peter D. 2009 2009-11-01 PMC N PMC2776036 19748649.0 10.1016/j.virol.2009.08.003 8jvbwdw6 0.580086 Stork_2011, Yasuda-Inoue_2013, Li_Z_2010, den_Boon_2010, Li_Z_2009 Li_Z_2009, Sasvari_2011
264 Gilfoy_2009 West Nile virus genome amplification requires the functional activities of the proteasome Gilfoy, Felicia; Fayzulin, Rafik; Mason, Peter W. 2009 2009-03-01 PMC N PMC7103393 19101004.0 10.1016/j.virol.2008.11.034 bcfkosyj 0.576497 Rice_1992, Meyerson_2017, Tallmadge_2008, den_Boon_2010, Li_C_2014 Case_2017
265 Risco_2013 Virus Morphogenesis in the Cell: Methods and Observations Risco, Cristina; Fernández de Castro, Isabel 2013 2013-02-16 PMC N PMC7121607 23737060.0 10.1007/978-94-007-6552-8_14 mkibohiw 0.576163 Denison_2008, UNKNOWN_2004, Cullen_2009, Trobaugh_2017, Marsh_2006 Giorda_2013, Wulan_2015, Sachse_2019
266 Fernández-Ponce_2018 Ultrastructural Localization and Molecular Associations of HCV Capsid Protein in Jurkat T Cells Fernández-Ponce, Cecilia; Durán-Ruiz, Maria C.; Narbona-Sánchez, Isaac; Muñoz-Miranda, Juan P.; Arbulo-Echevarria, Mikel M.; Serna-Sanz, Antonio; Baumann, Christian; Litrán, Rocío; Aguado, Enrique; Bloch, Wilhelm; García-Cozar, Francisco 2018 2018-01-04 COMM-USE N PMC5758585 29354102.0 10.3389/fmicb.2017.02595 purplsjn 0.575662 Volmer_2010, Trobaugh_2017, Compton_2014, Kang_2009, Liu_H_2009 Zhang_2015, Popescu_2011
267 Coiras_2008 Application of proteomics technology for analyzing the interactions between host cells and intracellular infectious agents Coiras, Mayte; Camafeita, Emilio; López‐Huertas, María Rosa; Calvo, Enrique; López, Juan Antonio; Alcamí, José 2008 2008-02-22 PMC N PMC7167661 18297655.0 10.1002/pmic.200700664 4ib12gnc 0.575173 Lester_2014, Berkhout_2006, Shi_J_2012, Viswanathan_2010, Kim_S_2018
268 Berryman_2016 Foot-and-mouth disease virus replicates independently of phosphatidylinositol 4-phosphate and type III phosphatidylinositol 4-kinases Berryman, Stephen; Moffat, Katy; Harak, Christian; Lohmann, Volker; Jackson, Terry 2016 2016-08-23 COMM-USE N PMC5156328 27093462.0 10.1099/jgv.0.000485 bmutxybx 0.574982 den_Boon_2010, Volmer_2010, Weissenhorn_2013, UNKNOWN_1995, Greene_2012 Sasaki_2011
269 Thomas_2018 Upsetting the Balance: When Viruses Manipulate Cell Polarity Control Thomas, Miranda; Banks, Lawrence 2018 2018-09-28 PMC N PMC7094317 29680664.0 10.1016/j.jmb.2018.04.016 cjqbisvm 0.574970 Berkhout_2006, Shi_J_2012, Trobaugh_2017, Haasnoot_2010 Bagga_2014, Giorda_2013, Chemudupati_2019
270 Ohn_T_2010 The role of posttranslational modifications in the assembly of stress granules Ohn, Takbum; Anderson, Paul 2010 2010-06-14 PMC N PMC7169689 21956944.0 10.1002/wrna.23 aohmw1ol 0.574751 Blank_2017, Trobaugh_2017, Yasuda-Inoue_2013, Hurley_2014, Dubois_2016
271 Romero-Brey_2015 NS5A Domain 1 and Polyprotein Cleavage Kinetics Are Critical for Induction of Double-Membrane Vesicles Associated with Hepatitis C Virus Replication Romero-Brey, Inés; Berger, Carola; Kallis, Stephanie; Kolovou, Androniki; Paul, David; Lohmann, Volker; Bartenschlager, Ralf 2015 2015-07-07 NONCOMM N PMC4488949 26152585.0 10.1128/mbio.00759-15 h9bx7yvt 0.573616 Volmer_2010, Meyerson_2017, Kang_2009, Stork_2011, Yasuda-Inoue_2013 Neufeldt_2016
272 White_2007 Identification of mouse hepatitis coronavirus A59 nucleocapsid protein phosphorylation sites White, Tiana C.; Yi, Zhengping; Hogue, Brenda G. 2007 2007-06-30 None N PMC2001268 17367888.0 10.1016/j.virusres.2007.02.008 w07zxw33 0.573274 Kang_2009, Meyerson_2017, Volmer_2010, Kumar_2016, Stork_2011 White_2006, Zhang_2015
273 Papa_2019 Recombinant rotaviruses rescued by reverse genetics reveal the role of NSP5 hyperphosphorylation in the assembly of viral factories Guido Papa; Luca Venditti; Francesca Arnoldi; Elisabeth M. Schraner; Christiaan Potgieter; Alexander Borodavka; Catherine Eichwald; Oscar R. Burrone 2019 2019-06-04 BioRxiv N 10.1101/660217 1xdrd4dd 0.572835 Volmer_2010, den_Boon_2010, Meyerson_2017, Stork_2011, Rice_1992 Papa_2019, Brockway_2005
274 Montero_2019 Eukaryotic initiation factor 4A (eIF4A) during viral infections Montero, Hilda; Pérez-Gil, Gustavo; Sampieri, Clara L. 2019 2019-02-22 PMC N PMC7088766 30796742.0 10.1007/s11262-019-01641-7 zzcph4cl 0.572587 Taschuk_2020, Yasuda-Inoue_2013, Dubois_2016, Haasnoot_2010, Moon_2012 Sun_D_2016, Guerrero_2015, Sasvari_2011
275 Ma-Lauer_2012 Virus–host interactomes — antiviral drug discovery Ma-Lauer, Yue; Lei, Jian; Hilgenfeld, Rolf; von Brunn, Albrecht 2012 2012-10-31 PMC N PMC7102765 23057872.0 10.1016/j.coviro.2012.09.003 z5axksvp 0.572376 Berkhout_2006, Trobaugh_2017, Haasnoot_2010, Shi_J_2012, Lester_2014 Watanabe_2019, Lin_K_2013, Durmuş_2017, Chemudupati_2019
276 Jiang_2009 Polypyrimidine tract-binding protein influences negative strand RNA synthesis of dengue virus Jiang, Linbin; Yao, Huiling; Duan, Xiaoqun; Lu, Xi; Liu, Yongming 2009 2009-07-24 PMC N PMC7117538 19450550.0 10.1016/j.bbrc.2009.05.036 0pq2vgwo 0.572080 Pong_2011, Li_C_2014, Yasuda-Inoue_2013, Meyerson_2017 Bhullar_2014, Masante_2015, Zhang_2015
277 Buck_1996 Comparison of The Replication of Positive-Stranded Rna Viruses of Plants and Animals Buck, Kenneth W. 1996 1996-12-31 PMC N PMC7131377 8895833.0 10.1016/s0065-3527(08)60736-8 qo5h18ui 0.570815 den_Boon_2010, Volmer_2010, Berkhout_2006, Haasnoot_2010, Taschuk_2020 Wulan_2015, Diaz_2012
278 Connolly_2017 Viral hijacking of host caspases: an emerging category of pathogen–host interactions Connolly, Patrick F; Fearnhead, Howard O 2017 2017-05-12 PMC N PMC5520459 28524855.0 10.1038/cdd.2017.59 zy3ynp7q 0.570456 Berkhout_2006, Klein_2011, Shi_J_2012, Lester_2014, Mao_J_2019 Galluzzi_2008, Lin_L_2010, Sun_D_2016, Rajsbaum_2013
279 Mack_2012 Modulation of Autophagy-Like Processes by Tumor Viruses Mack, Hildegard I. D.; Munger, Karl 2012 2012-06-25 COMM-USE N PMC3901111 24710474.0 10.3390/cells1030204 j4iwq2ld 0.570456 Shi_J_2012, Berkhout_2006, Mao_J_2019, Kim_S_2018, Lester_2014 Cheng_2014, Lee_H_2008, Espert_2007, Lin_L_2010
280 Kopek_2007 Three-Dimensional Analysis of a Viral RNA Replication Complex Reveals a Virus-Induced Mini-Organelle Kopek, Benjamin G; Perkins, Guy; Miller, David J; Ellisman, Mark H; Ahlquist, Paul 2007 2007-08-14 COMM-USE N PMC1945040 17696647.0 10.1371/journal.pbio.0050220 ap5n6ijl 0.570138 den_Boon_2010, Stork_2011, Rice_1992, Payne_2017, Weissenhorn_2013 Wulan_2015, Bhullar_2014
281 Grose_2016 Alternative autophagy, brefeldin A and viral trafficking pathways Grose, Charles; Klionsky, Daniel J. 2016 2016-07-20 NONCOMM N PMC5082769 27439673.0 10.1080/15548627.2016.1203489 fkvlfgjx 0.569836 Klein_2011, Weissenhorn_2013, Tessier_2019, Berkhout_2006 Lin_L_2010, Ávila-Pérez_2019, Rey-Jurado_2015, Schmid_2007
282 Ariumi_2014 Multiple functions of DDX3 RNA helicase in gene regulation, tumorigenesis, and viral infection Ariumi, Yasuo 2014 2014-12-05 COMM-USE N PMC4257086 25538732.0 10.3389/fgene.2014.00423 44imoolt 0.569475 Yasuda-Inoue_2013, Meyerson_2017, Ban_J_2018, Li_C_2014 Yasuda-Inoue_2013, Cheng_2018
283 Wang_2010 The nucleolus and viral infection Wang, Lei; Ren, Xiao-ming; Xing, Jun-ji; Zheng, Alan C. 2010 2010-06-06 PMC N PMC7090757 20960288.0 10.1007/s12250-010-3093-5 29ek8x34 0.568249 Volmer_2010, Yasuda-Inoue_2013, Trobaugh_2017, Haasnoot_2010, den_Boon_2010 Wulan_2015, Sun_D_2016, Matthews_2011, Zhang_2015
284 Fung_2015 The Emerging Roles of Viroporins in ER Stress Response and Autophagy Induction during Virus Infection Fung, To Sing; Torres, Jaume; Liu, Ding Xiang 2015 2015-06-04 COMM-USE N PMC4488716 26053926.0 10.3390/v7062749 qblrokpg 0.567759 Klein_2011, Shi_J_2012, Choi_2020, Taschuk_2020, Berkhout_2006 Lin_L_2010, Neufeldt_2016, Fulcher_2011
285 Guo_F_2017 HBV core protein allosteric modulators differentially alter cccDNA biosynthesis from de novo infection and intracellular amplification pathways Guo, Fang; Zhao, Qiong; Sheraz, Muhammad; Cheng, Junjun; Qi, Yonghe; Su, Qing; Cuconati, Andrea; Wei, Lai; Du, Yanming; Li, Wenhui; Chang, Jinhong; Guo, Ju-Tao 2017 2017-09-25 COMM-USE N PMC5629035 28945802.0 10.1371/journal.ppat.1006658 m3y35ozx 0.567516 Stork_2011, den_Boon_2010, Meyerson_2017, Rice_1992, Pong_2011 Neufeldt_2016, Masante_2015, Chemudupati_2019
286 Lloyd_2016 Enterovirus Control of Translation and RNA Granule Stress Responses Lloyd, Richard E. 2016 2016-03-30 COMM-USE N PMC4848588 27043612.0 10.3390/v8040093 y6qw1r8i 0.566006 Trobaugh_2017, Herbert_2016, Berkhout_2006, Abernathy_2015, Haasnoot_2010 Zhang_2015, Sun_D_2016
287 Komarova_2009 Chapter 3 Virus Versus Host Cell Translation Love and Hate Stories Komarova, Anastassia V.; Haenni, Anne-Lise; Ramírez, Bertha Cecilia 2009 2009-12-31 PMC N PMC7112309 19695382.0 10.1016/s0065-3527(09)73003-9 e6hnybe5 0.561857 Trobaugh_2017, Roberts_2009, Berkhout_2006, Haasnoot_2010, Abernathy_2015 Roberts_2009, Sasvari_2011, Jaafar_2018
288 You_J_2007 Trafficking motifs in the SARS-coronavirus nucleocapsid protein You, Jae-Hwan; Reed, Mark L.; Hiscox, Julian A. 2007 2007-07-13 PMC N PMC7092899 17524366.0 10.1016/j.bbrc.2007.05.036 cea11cyx 0.561701 Volmer_2010, Kang_2009, Shi_S_2000, UNKNOWN_1993, UNKNOWN_1987 Zhang_2015, Timani_2005, Guo_Y_2003, Sun_D_2016
289 McBride_2014 The Coronavirus Nucleocapsid Is a Multifunctional Protein McBride, Ruth; van Zyl, Marjorie; Fielding, Burtram C. 2014 2014-08-07 COMM-USE N PMC4147684 25105276.0 10.3390/v6082991 8pkrg0mx 0.561444 Kang_2009, Volmer_2010, Pong_2011, Meyerson_2017 Zhang_2015, Sun_D_2016, Kanjanahaluethai_2007
290 Choi_2018 Autophagy during viral infection — a double-edged sword Choi, Younho; Bowman, James W.; Jung, Jae U. 2018 2018-03-19 PMC N PMC6907743 29556036.0 10.1038/s41579-018-0003-6 hb0kjnhp 0.558653 Lester_2014, Mao_J_2019, Viswanathan_2010, Kim_S_2018, Rajsbaum_2013 Lin_L_2010, Mao_J_2019, Lee_H_2008, Shoji-Kawata_2009
291 Stram_2006 Inhibition of Viruses by RNA Interference Stram, Yehuda; Kuzntzova, Larisa 2006 2006-01-01 PMC N PMC7088519 16732482.0 10.1007/s11262-005-6914-0 q3leqiou 0.557147 Berkhout_2006, Trobaugh_2017, Rice_1992, Haasnoot_2010 Rothe_2010, Haddad_2011, Berkhout_2006
292 Galluzzi_2008 Viral Control of Mitochondrial Apoptosis Galluzzi, Lorenzo; Brenner, Catherine; Morselli, Eugenia; Touat, Zahia; Kroemer, Guido 2008 2008-05-30 COMM-USE N PMC2376094 18516228.0 10.1371/journal.ppat.1000018 w2xuf15h 0.557147 Lester_2014, Berkhout_2006, Mao_J_2019, Viswanathan_2010, Shi_J_2012 Cooray_2007, Neumann_2015, Bagga_2014, Shoji-Kawata_2009
293 Emmott_2010 Elucidation of the avian nucleolar proteome by quantitative proteomics using SILAC and changes in cells infected with the coronavirus infectious bronchitis virus Emmott, Edward; Smith, Catriona; Emmett, Stevan R.; Dove, Brian K.; Hiscox, Julian A. 2010 2010-09-08 PMC N PMC7167976 20827733.0 10.1002/pmic.201000139 ctzrgqe7 0.556126 Volmer_2010, Trobaugh_2017, den_Boon_2010, Rice_1992, Haasnoot_2010
294 Wang_2017 Recent advances in the identification of the host factors involved in dengue virus replication Wang, Yi; Zhang, Ping 2017 2017-01-24 PMC N PMC6598876 28124222.0 10.1007/s12250-016-3902-6 51ooph3v 0.555024 Lu_P_2016, Ryu_W_2017, Potgieter_1986, Crowe_2014 Jung_2019, Niemeyer_2018, Yu_D_2017
295 Han_M_2017 Nuclear imprisonment of host cellular mRNA by nsp1β protein of porcine reproductive and respiratory syndrome virus Han, Mingyuan; Ke, Hanzhong; Zhang, Qingzhan; Yoo, Dongwan 2017 2017-05-31 PMC N PMC7111332 28235682.0 10.1016/j.virol.2017.02.004 na5jyhmj 0.554649 Meyerson_2017, Yasuda-Inoue_2013, Ban_J_2018, Herbert_2016, Trobaugh_2017
296 Mekhail_2007 Identification of a Common Subnuclear Localization Signal Mekhail, Karim; Rivero-Lopez, Luis; Al-Masri, Ahmad; Brandon, Caroline; Khacho, Mireille; Lee, Stephen 2007 2007-10-01 PMC N PMC1995723 17652456.0 10.1091/mbc.e07-03-0295 2sytzlio 0.554094 Dubois_2016, Ivarsson_2012, Blank_2017, Hurley_2014, Emmott_2009 Fu_J_2000, Zhang_2015, Fulcher_2011
297 Magden_2004 Inhibitors of virus replication: recent developments and prospects Magden, Julia; Kääriäinen, Leevi; Ahola, Tero 2004 2004-12-09 PMC N PMC7082807 15592828.0 10.1007/s00253-004-1783-3 55ceq7ze 0.552773 Rice_1992, Tallmadge_2008, den_Boon_2010, Potgieter_1986, Ryu_W_2017 Federico_2011, Müller_2009, Chemudupati_2019, Paintsil_2009
298 Reggiori_2006 Membrane Origin for Autophagy Reggiori, Fulvio 2006 2006-12-31 PMC N PMC7112310 16860663.0 10.1016/s0070-2153(06)74001-7 pqxkyg8z 0.552573 Weissenhorn_2013, Hurley_2014, Tessier_2019, Cheng_2014, Klein_2011 Reggiori_2012, Tanida_2004
299 Hagemeijer_2014 Membrane rearrangements mediated by coronavirus nonstructural proteins 3 and 4 Hagemeijer, Marne C.; Monastyrska, Iryna; Griffith, Janice; van der Sluijs, Peter; Voortman, Jarno; van Bergen en Henegouwen, Paul M.; Vonk, Annelotte M.; Rottier, Peter J.M.; Reggiori, Fulvio; de Haan, Cornelis A.M. 2014 2014-06-30 PMC N PMC7111329 24928045.0 10.1016/j.virol.2014.04.027 pz6t5eee 0.552547 Volmer_2010, UNKNOWN_1995, Quiner_2010, den_Boon_2010 Kanjanahaluethai_2007
300 Li_C_2013 The DEAD-box RNA helicase DDX5 acts as a positive regulator of Japanese encephalitis virus replication by binding to viral 3′ UTR Li, Chen; Ge, Ling-ling; Li, Peng-peng; Wang, Yue; Sun, Ming-xia; Huang, Li; Ishag, Hassan; Di, Dong-dong; Shen, Zhi-qiang; Fan, Wei-xing; Mao, Xiang 2013 2013-11-30 PMC N PMC7113685 24035833.0 10.1016/j.antiviral.2013.09.002 1cy15tny 0.549766 Yasuda-Inoue_2013, Li_C_2014, Meyerson_2017, Liu_H_2009 Yasuda-Inoue_2013, Li_C_2014, Bhullar_2014
301 Schneider_2016 Chapter 12 The Virus–Host Interactome Knowing the Players to Understand the Game Schneider, Monika; Johnson, Jeffery R.; Krogan, Nevan J.; Chanda, Sumit K. 2016 2016-12-31 PMC N PMC7149720 10.1016/b978-0-12-800964-2.00012-4 f676pagf 0.549155 Lester_2014, UNKNOWN_2004, Alcami_2000, Alcami_2000 Korth_2016, Durmuş_2017, Tarakhovsky_2018, Chemudupati_2019
302 Liu_L_2015 Resolution of the cellular proteome of the nucleocapsid protein from a highly pathogenic isolate of porcine reproductive and respiratory syndrome virus identifies PARP-1 as a cellular target whose interaction is critical for virus biology Liu, Long; Lear, Zoe; Hughes, David J.; Wu, Weining; Zhou, En-min; Whitehouse, Adrian; Chen, Hongying; Hiscox, Julian A. 2015 2015-03-23 COMM-USE N PMC4414928 25614100.0 10.1016/j.vetmic.2014.11.023 89j0om5b 0.549107 Trobaugh_2017, Meyerson_2017, Rice_1992, den_Boon_2010, Berkhout_2006 Zhang_2015
303 Kirkegaard_2004 Cellular autophagy: surrender, avoidance and subversion by microorganisms Kirkegaard, Karla; Taylor, Matthew P.; Jackson, William T. 2004 2004-01-01 PMC N PMC7097095 15031729.0 10.1038/nrmicro865 pl40xr0s 0.547617 Denison_2008, Cheng_2014, Klein_2011, Lester_2014, Kindler_2014 Lin_L_2010, Cheng_2014, Galluzzi_2008
304 Cautain_2014 Components and regulation of nuclear transport processes Cautain, Bastien; Hill, Richard; de Pedro, Nuria; Link, Wolfgang 2014 2014-12-22 PMC N PMC7163960 25429850.0 10.1111/febs.13163 sj4uvike 0.547126 Tessier_2019, Trobaugh_2017, Berkhout_2006, Dubois_2016, Haasnoot_2010
305 Maier_2013 Infectious Bronchitis Virus Generates Spherules from Zippered Endoplasmic Reticulum Membranes Maier, Helena J.; Hawes, Philippa C.; Cottam, Eleanor M.; Mantell, Judith; Verkade, Paul; Monaghan, Paul; Wileman, Tom; Britton, Paul 2013 2013-10-22 COMM-USE N PMC3812713 24149513.0 10.1128/mbio.00801-13 9500ducy 0.546683 den_Boon_2010, Volmer_2010, Weissenhorn_2013, Welsch_2009, Quiner_2010 Doyle_2018, Krzyzaniak_2013
306 Brooks_2017 Viral Impact in Autoimmune Diseases: Expanding the “X Chromosome–Nucleolus Nexus” Hypothesis Brooks, Wesley H. 2017 2017-11-28 COMM-USE N PMC5712313 29234321.0 10.3389/fimmu.2017.01657 tk7vn1v1 0.546521 Dubois_2016, den_Boon_2010, Volmer_2010, Ivanova_2015, Yasuda-Inoue_2013 Wulan_2015, Chemudupati_2019, Zhang_2015
307 Onomoto_2014 Antiviral innate immunity and stress granule responses Onomoto, Koji; Yoneyama, Mitsutoshi; Fung, Gabriel; Kato, Hiroki; Fujita, Takashi 2014 2014-09-30 PMC N 25153707.0 10.1016/j.it.2014.07.006 o3ipzn05 0.545234 Lester_2014, Berkhout_2006, Dixit_2013, Mao_J_2019, Shi_J_2012 Carrero_2013, Rajsbaum_2013
308 Chumakov_2010 Organization and regulation of nucleocytoplasmic transport Chumakov, S. P.; Prassolov, V. S. 2010 2010-04-24 PMC N PMC7088953 10.1134/s0026893310020020 6friw2ek 0.543872 UNKNOWN_1995, Hurley_2014, Greene_2012, Dubois_2016 Fulcher_2011, Fu_J_2000, Brown_2008
309 Watanabe_2019 Exploitation of glycosylation in enveloped virus pathobiology Watanabe, Yasunori; Bowden, Thomas A.; Wilson, Ian A.; Crispin, Max 2019 2019-10-23 None N PMC6686077 31121217.0 10.1016/j.bbagen.2019.05.012 zdr0f2uq 0.542405 Tallmadge_2008, Potgieter_1986, Lu_P_2016, Mao_J_2019 Vigerust_2011, Vigerust_2007, Bagdonaite_2018, Raman_2016
310 Alcami_2000 Viral mechanisms of immune evasion Alcami, Antonio; Koszinowski, Ulrich H. 2000 2000-09-01 PMC N PMC7141567 10953097.0 10.1016/s0167-5699(00)01699-6 jn8w7z0t 0.541417 Alcami_2000, Alcami_2000, Lester_2014, Denison_2008 Alcami_2000, Alcami_2000, Galluzzi_2008, Watanabe_2019
311 Alcami_2000 Viral mechanisms of immune evasion Alcami, Antonio; Koszinowski, Ulrich H. 2000 2000-09-01 PMC N PMC7141568 10989308.0 10.1016/s0966-842x(00)01830-8 tfok8ep7 0.541417 Alcami_2000, Alcami_2000, Lester_2014, Denison_2008 Alcami_2000, Alcami_2000, Galluzzi_2008, Watanabe_2019
312 Tarakhovsky_2018 Drawing on disorder: How viruses use histone mimicry to their advantage Tarakhovsky, Alexander; Prinjha, Rab K. 2018 2018-07-02 NONCOMM N PMC6028506 29934321.0 10.1084/jem.20180099 ti0avcqy 0.541044 Denison_2008, Berkhout_2006, Trobaugh_2017, Rivas_2016, Shi_J_2012 Chemudupati_2019, Watanabe_2019
313 Jäger_2011 Purification and characterization of HIV–human protein complexes Jäger, Stefanie; Gulbahce, Natali; Cimermancic, Peter; Kane, Joshua; He, Nanhai; Chou, Seemay; D’Orso, Iván; Fernandes, Jason; Jang, Gwendolyn; Frankel, Alan D.; Alber, Tom; Zhou, Qiang; Krogan, Nevan J. 2011 2011-01-31 None N PMC3076283 20708689.0 10.1016/j.ymeth.2010.08.007 9cjo5gx4 0.540708 Berkhout_2006, Trobaugh_2017, Cullen_2009, Rice_1992, Leiva-Torres_2017 Zhang_2015, Sun_D_2016, van_der_Linden_2014, Deng_2019
314 McIntyre_2018 Positive-sense RNA viruses reveal the complexity and dynamics of the cellular and viral epitranscriptomes during infection McIntyre, Will; Netzband, Rachel; Bonenfant, Gaston; Biegel, Jason M; Miller, Clare; Fuchs, Gabriele; Henderson, Eric; Arra, Manoj; Canki, Mario; Fabris, Daniele; Pager, Cara T 2018 2018-06-20 NONCOMM N PMC6009648 29373715.0 10.1093/nar/gky029 lefrdvqe 0.540472 Rice_1992, den_Boon_2010, Trobaugh_2017, Stork_2011, Ryu_W_2017 Bhullar_2014, Wulan_2015, Neufeldt_2016
315 Ladygina_2011 Dynamic Palmitoylation and the Role of DHHC Proteins in T Cell Activation and Anergy Ladygina, Nadejda; Martin, Brent R.; Altman, Amnon 2011 2011-01-01 PMC N PMC5464999 21569911.0 10.1016/b978-0-12-387664-5.00001-7 9vkydl83 0.540472 Ivarsson_2012, Blank_2017, Choudhury_2017, Greene_2012 Sobocińska_2018, Tsukamoto_2013, Zhang_2015
316 Strating_2015 ITRACONAZOLE INHIBITS ENTEROVIRUS REPLICATION BY TARGETING THE OXYSTEROL-BINDING PROTEIN Strating, Jeroen R.P.M.; van der Linden, Lonneke; Albulescu, Lucian; Bigay, Joëlle; Arita, Minetaro; Delang, Leen; Leyssen, Pieter; van der Schaar, Hilde M.; Lanke, Kjerstin H.W.; Thibaut, Hendrik Jan; Ulferts, Rachel; Drin, Guillaume; Schlinck, Nina; Wubbolts, Richard W.; Sever, Navdar; Head, Sarah A.; Liu, Jun O.; Beachy, Philip A.; De Matteis, Maria A.; Shair, Matthew D.; Olkkonen, Vesa M.; Neyts, Johan; van Kuppeveld, Frank J.M. 2015 2015-01-29 None N PMC4383725 25640182.0 10.1016/j.celrep.2014.12.054 3kmqy07w 0.538402 Ban_J_2018, Meyerson_2017, Greene_2012, Yasuda-Inoue_2013, Li_C_2014 Sidhu_1996, De_Burghgraeve_2012, Yao_C_2018
317 Shulla_2016 (+) RNA virus replication compartments: a safe home for (most) viral replication Shulla, Ana; Randall, Glenn 2016 2016-08-31 None N PMC4983521 27253151.0 10.1016/j.mib.2016.05.003 4eufvh88 0.538040 Walker_2010, Johnson_2018, UNKNOWN_2004, Valle_1988 Sasvari_2010, Denison_2008
318 Pan_J_2008 Genome-Wide Analysis of Protein-Protein Interactions and Involvement of Viral Proteins in SARS-CoV Replication Pan, Ji'An; Peng, Xiaoxue; Gao, Yajing; Li, Zhilin; Lu, Xiaolu; Chen, Yingzhao; Ishaq, Musarat; Liu, Dan; DeDiego, Marta L.; Enjuanes, Luis; Guo, Deyin 2008 2008-10-01 COMM-USE N PMC2553179 18827877.0 10.1371/journal.pone.0003299 aqau2n7q 0.537159 Yasuda-Inoue_2013, Pong_2011, Stork_2011, Rice_1992, Meyerson_2017 Wang_2009
319 Wang_2018 Imaging, Tracking and Computational Analyses of Virus Entry and Egress with the Cytoskeleton Wang, I-Hsuan; Burckhardt, Christoph J.; Yakimovich, Artur; Greber, Urs F. 2018 2018-03-31 COMM-USE N PMC5923460 29614729.0 10.3390/v10040166 q6kx8eo7 0.537015 den_Boon_2010, Trobaugh_2017, Hull_2014, Roman_1985, Weissenhorn_2013 Risco_2013, Netherton_2007, Wulan_2015, Walker_2016
320 Louten_2016 Chapter 3 Features of Host Cells Cellular and Molecular Biology Review Louten, Jennifer 2016 2016-12-31 PMC N PMC7149772 10.1016/b978-0-12-800947-5.00003-x bwm1fl8f 0.536891 den_Boon_2010, Stork_2011, Rice_1992, Trobaugh_2017, Weissenhorn_2013 Villanueva_2005, Wulan_2015
321 Du_S_2018 Viral-Mediated mRNA Degradation for Pathogenesis Du, Shujuan; Liu, Xiaoqing; Cai, Qiliang 2018 2018-11-29 COMM-USE N PMC6315618 30501096.0 10.3390/biomedicines6040111 4k5exdes 0.536204 Lester_2014, Mao_J_2019, Trobaugh_2017, Kim_S_2018 Abernathy_2015, Gaucherand_2019, Meyers_2011
322 Torres-Flores_2015 Tight Junctions Go Viral! Torres-Flores, Jesús M.; Arias, Carlos F. 2015 2015-09-23 COMM-USE N PMC4584309 26404354.0 10.3390/v7092865 k5f9ybrc 0.535988 Trobaugh_2017, den_Boon_2010, Klein_2011, Berkhout_2006, Haasnoot_2010 Fulcher_2011, Zhang_2015, UNKNOWN_1994
323 Fu_C_2011 Viral life cycles captured in three-dimensions with electron microscopy tomography Fu, Chi-yu; Johnson, Johnson E 2011 2011-08-31 None N PMC3163493 21887207.0 10.1016/j.coviro.2011.06.008 spye2c1x 0.535703 UNKNOWN_2004, den_Boon_2010, Conzelmann_1996, Cullen_2009, Rice_1992 Sachse_2019, Sewald_2018, Romero-Brey_2015, Effantin_2016
324 Melia_2017 Escaping Host Factor PI4KB Inhibition: Enterovirus Genomic RNA Replication in the Absence of Replication Organelles Melia, Charlotte E.; van der Schaar, Hilde M.; Lyoo, Heyrhyoung; Limpens, Ronald W.A.L.; Feng, Qian; Wahedi, Maryam; Overheul, Gijs J.; van Rij, Ronald P.; Snijder, Eric J.; Koster, Abraham J.; Bárcena, Montserrat; van Kuppeveld, Frank J.M. 2017 2017-10-17 None N PMC5656745 29045829.0 10.1016/j.celrep.2017.09.068 9v1k6idk 0.535090 Meyerson_2017, Greene_2012, Berkhout_2006, den_Boon_2010, Yasuda-Inoue_2013 Case_2017, Yan_J_2020, Sun_D_2016
325 Galluzzi_2019 Autophagy-Independent Functions of the Autophagy Machinery Galluzzi, Lorenzo; Green, Douglas R. 2019 2019-06-13 PMC N 31199916.0 10.1016/j.cell.2019.05.026 6lwmr9fq 0.534898 Shi_J_2012, Jang_2019, Berkhout_2006, Rytkönen_2007
326 Royle_2015 Emerging Roles of Viroporins Encoded by DNA Viruses: Novel Targets for Antivirals? Royle, Jamie; Dobson, Samuel John; Müller, Marietta; Macdonald, Andrew 2015 2015-10-16 COMM-USE N PMC4632388 26501313.0 10.3390/v7102880 3aonqyub 0.534271 Trobaugh_2017, Shi_J_2012, Taschuk_2020, Haasnoot_2010, Berkhout_2006 Nieva_2012, Fulcher_2011, Giorda_2013
327 Snijder_2020 A unifying structural and functional model of the coronavirus replication organelle: tracking down RNA synthesis Eric J. Snijder; Ronald W.A.L. Limpens; Adriaan H. de Wilde; Anja W. M. de Jong; Jessika C. Zevenhoven-Dobbe; Helena J. Maier; F.G.A. Faas; Abraham J. Koster; Montserrat Bárcena 2020 2020-03-24 BioRxiv Y 10.1101/2020.03.24.005298 mmkrwj8t 0.532413 den_Boon_2010, Rice_1992, Volmer_2010, Terrier_2016, Stork_2011 Neufeldt_2016, Hagemeijer_2014
328 J_Alsaadi_2019 Membrane binding proteins of coronaviruses J Alsaadi, Entedar A; Jones, Ian M 2019 2019-04-29 NONCOMM N PMC7079996 10.2217/fvl-2018-0144 0hwbmf8k 0.531731 den_Boon_2010, Ryu_W_2017, Rice_1992, Compton_2014, Volmer_2010 Narayanan_2015, Niemeyer_2018, Zhang_2015, Watanabe_2019
329 Zhang_2011 Tripeptidyl peptidase II serves as an alternative to impaired proteasome to maintain viral growth in the host cells Zhang, Jingchun; Wong, Jerry; Gao, Guang; Luo, Honglin 2011 2011-01-03 PMC N 10.1016/j.febslet.2010.11.056 tbpngba8 0.531366 Greene_2012, Ban_J_2018, Meyerson_2017, Martín-Vicente_2017, Klein_2011
330 Paul_2014 Hepatitis C Virus RNA Replication and Assembly: Living on the Fat of the Land Paul, David; Madan, Vanesa; Bartenschlager, Ralf 2014 2014-11-12 PMC N 25525790.0 10.1016/j.chom.2014.10.008 vm2tk2eu 0.530701 Potgieter_1986, Mao_J_2019, den_Boon_2010, Berkhout_2006, Shi_J_2012
331 Fan_Y_2018 Breaking Bad: How Viruses Subvert the Cell Cycle Fan, Ying; Sanyal, Sumana; Bruzzone, Roberto 2018 2018-11-19 COMM-USE N PMC6252338 30510918.0 10.3389/fcimb.2018.00396 bsnz24jx 0.530514 Lester_2014, Kim_S_2018, Shi_J_2012, Berkhout_2006, Kindler_2014 Bagga_2014, Galluzzi_2008, Chemudupati_2019, Giorda_2013
332 Lee_Y_2008 Autophagic machinery activated by dengue virus enhances virus replication Lee, Ying-Ray; Lei, Huan-Yao; Liu, Ming-Tao; Wang, Jen-Ren; Chen, Shun-Hua; Jiang-Shieh, Ya-Fen; Lin, Yee-Shin; Yeh, Trai-Ming; Liu, Ching-Chuan; Liu, Hsiao-Sheng 2008 2008-05-10 PMC N PMC7103294 18353420.0 10.1016/j.virol.2008.02.016 55yzb1sz 0.529572 Greene_2012, Ban_J_2018, Klein_2011, Sir_D_2008 Ding_2017, Mao_J_2019
333 Terada_2017 MERS coronavirus nsp1 participates in an efficient propagation through a specific interaction with viral RNA Terada, Yutaka; Kawachi, Kengo; Matsuura, Yoshiharu; Kamitani, Wataru 2017 2017-11-30 None N PMC7118922 28843094.0 10.1016/j.virol.2017.08.026 mtj46j82 0.529540 Meyerson_2017, Rice_1992, Stork_2011, Yasuda-Inoue_2013, Li_C_2014 Narayanan_2015, Niemeyer_2018
334 Schaad_1997 Formation of plant RNA virus replication complexes on membranes: role of an endoplasmic reticulum-targeted viral protein. Schaad, M C; Jensen, P E; Carrington, J C 1997 1997-07-01 PMC N PMC1170028 9233814.0 10.1093/emboj/16.13.4049 sfezm3ga 0.528962 Stork_2011, den_Boon_2010, Narayanan_2003, Volmer_2010, UNKNOWN_1995 Neufeldt_2016, Diaz_2012
335 Kong_2015 Interactions among SARS-CoV accessory proteins revealed by bimolecular fluorescence complementation assay Kong, Jianqiang; Shi, Yanwei; Wang, Zhifang; Pan, Yiting 2015 2015-06-06 None N PMC4629423 26579480.0 10.1016/j.apsb.2015.05.002 dc1rufc4 0.528876 Volmer_2010, Ivarsson_2012, Bansal_2020, Choudhury_2017, Berkhout_2006 Zhang_2015, Kumar_2007, van_der_Linden_2014, Zhang_2009
336 Reggiori_2012 Autophagy: More Than a Nonselective Pathway Reggiori, Fulvio; Komatsu, Masaaki; Finley, Kim; Simonsen, Anne 2012 2012-05-15 COMM-USE N PMC3362037 22666256.0 10.1155/2012/219625 36jzzy77 0.528241 Hurley_2014, Klein_2011, Tessier_2019, Cheng_2014, Weissenhorn_2013 Reggiori_2006, Jacomin_2018, Tanida_2004
337 Chenon_2011 A viral deubiquitylating enzyme targets viral RNA-dependent RNA polymerase and affects viral infectivity Chenon, Mélanie; Camborde, Laurent; Cheminant, Soizic; Jupin, Isabelle 2011 2011-11-25 None N PMC3273391 22117220.0 10.1038/emboj.2011.424 tgqyl5aw 0.527674 Meyerson_2017, Stork_2011, Yasuda-Inoue_2013, Kang_2009, Pong_2011 Bhullar_2014
338 Deng_2010 Do viruses subvert cholesterol homeostasis to induce host cubic membranes? Deng, Yuru; Almsherqi, Zakaria A.; Ng, Mary M.L.; Kohlwein, Sepp D. 2010 2010-07-31 PMC N PMC7127466 20434915.0 10.1016/j.tcb.2010.04.001 ba5re3d7 0.527633 Weissenhorn_2013, Kim_S_2018, Trobaugh_2017, Mao_J_2019, den_Boon_2010 Sze_C_2015, Neufeldt_2016, Lin_L_2010
339 Gilbertson_2018 Changes in mRNA abundance drive shuttling of RNA binding proteins, linking cytoplasmic RNA degradation to transcription Gilbertson, Sarah; Federspiel, Joel D; Hartenian, Ella; Cristea, Ileana M; Glaunsinger, Britt 2018 2018-10-03 COMM-USE N PMC6203436 30281021.0 10.7554/elife.37663 cv7rrjxe 0.526928 Blank_2017, Trobaugh_2017, Abernathy_2015, Wang_2007, Ivanova_2015 Shi_S_2000
340 Bercovich-Kinori_2016 A systematic view on influenza induced host shutoff Bercovich-Kinori, Adi; Tai, Julie; Gelbart, Idit Anna; Shitrit, Alina; Ben-Moshe, Shani; Drori, Yaron; Itzkovitz, Shalev; Mandelboim, Michal; Stern-Ginossar, Noam 2016 2016-08-15 COMM-USE N PMC5028189 27525483.0 10.7554/elife.18311 zvemg1hc 0.526493 Trobaugh_2017, Haasnoot_2010, Berkhout_2006, Herbert_2016, Abernathy_2015 Gaucherand_2019, Gaucherand_2018
341 Gustin_2011 Viral Takeover of the Host Ubiquitin System Gustin, Jean K.; Moses, Ashlee V.; Früh, Klaus; Douglas, Janet L. 2011 2011-07-28 PMC N PMC3147166 21847386.0 10.3389/fmicb.2011.00161 ua9xagq3 0.526464 Berkhout_2006, Taschuk_2020, den_Boon_2010, Klein_2011, Trobaugh_2017 Wimmer_2015, van_Tol_2017, Sun_D_2016, Calistri_2014
342 Maier_2016 Extensive coronavirus-induced membrane rearrangements are not a determinant of pathogenicity Maier, Helena J.; Neuman, Benjamin W.; Bickerton, Erica; Keep, Sarah M.; Alrashedi, Hasan; Hall, Ross; Britton, Paul 2016 2016-06-03 COMM-USE N PMC4891661 27255716.0 10.1038/srep27126 e1zhpksc 0.525682 den_Boon_2010, Volmer_2010, Rice_1992, Compton_2014, Stork_2011 Doyle_2018, Neufeldt_2016
343 Amorim_2017 Zika virus inhibits eIF2α-dependent stress granule assembly Amorim, Raquel; Temzi, Abdelkrim; Griffin, Bryan D.; Mouland, Andrew J. 2017 2017-07-17 COMM-USE N PMC5531678 28715409.0 10.1371/journal.pntd.0005775 ec8lu2a3 0.525317 Berkhout_2006, Volmer_2010, Trobaugh_2017, den_Boon_2010, Meyerson_2017 Rabouw_2016
344 Sun_Y_2015 iTRAQ‐based quantitative subcellular proteomic analysis of Avibirnavirus‐infected cells Sun, Yanting; Hu, Boli; Fan, Chengfei; Jia, Lu; Zhang, Yina; Du, Aifang; Zheng, Xiaojuan; Zhou, Jiyong 2015 2015-06-17 PMC N PMC7163642 25929241.0 10.1002/elps.201500014 sgswo5s4 0.523661 Greene_2012, Trobaugh_2017, Volmer_2010, Meyerson_2017, Herbert_2016
345 Sola_2011 RNA-RNA and RNA-protein interactions in coronavirus replication and transcription Sola, Isabel; Mateos-Gomez, Pedro A; Almazan, Fernando; Zuñiga, Sonia; Enjuanes, Luis 2011 2011-03-01 PMC N PMC3230552 21378501.0 10.4161/rna.8.2.14991 kmwncmq8 0.523661 Yasuda-Inoue_2013, Stork_2011, den_Boon_2010, Trobaugh_2017, Ivanova_2015 Bhullar_2014
346 Munday_2010 Quantitative Proteomic Analysis of A549 Cells Infected with Human Respiratory Syncytial Virus Munday, Diane C.; Emmott, Edward; Surtees, Rebecca; Lardeau, Charles-Hugues; Wu, Weining; Duprex, W. Paul; Dove, Brian K.; Barr, John N.; Hiscox, Julian A. 2010 2010-07-20 NONCOMM N PMC2984239 20647383.0 10.1074/mcp.m110.001859 2zhaknbi 0.523434 Volmer_2010, Trobaugh_2017, Berkhout_2006, Haasnoot_2010, den_Boon_2010 Zhang_2015, Ding_2012
347 Thomas_2011 RNA granules: The good, the bad and the ugly Thomas, María Gabriela; Loschi, Mariela; Desbats, María Andrea; Boccaccio, Graciela Lidia 2011 2011-02-28 None N PMC3001194 20813183.0 10.1016/j.cellsig.2010.08.011 fxvwxkd2 0.523030 Stoecklin_2012, Hurley_2014, Dubois_2016, Blank_2017, Tsai_2014 Stoecklin_2012, Zhang_2019
348 Doyle_2019 The Porcine Deltacoronavirus Replication Organelle Comprises Double-Membrane Vesicles and Zippered Endoplasmic Reticulum with Double-Membrane Spherules Doyle, Nicole; Hawes, Philippa C.; Simpson, Jennifer; Adams, Lorin H.; Maier, Helena J. 2019 2019-11-05 COMM-USE N PMC6893519 31694296.0 10.3390/v11111030 i6t8jgdm 0.522117 den_Boon_2010, Volmer_2010, Weissenhorn_2013, Terrier_2016, Quiner_2010 Doyle_2018
349 Sharma_2012 Chapter Nineteen Determination of Host RNA Helicases Activity in Viral Replication Sharma, Amit; Boris-Lawrie, Kathleen 2012 2012-12-31 None N PMC4862593 22713331.0 10.1016/b978-0-12-396546-2.00019-x qy0js1rb 0.522016 den_Boon_2010, Rice_1992, Yasuda-Inoue_2013, Stork_2011, Taschuk_2020 Xia_H_2015, Jeang_2006
350 Brownsword_2019 Infectious bronchitis virus regulates cellular stress granule signaling Matthew J. Brownsword; Nicole Doyle; Michèle Brocard; Nicolas Locker; Helena J. Maier 2019 2019-10-28 BioRxiv N 10.1101/819482 ak7hbwr7 0.520555 Trobaugh_2017, Berkhout_2006, Gaucherand_2019, Herbert_2016, Klein_2011 Lutz_2019
351 Limpens_2011 The Transformation of Enterovirus Replication Structures: a Three-Dimensional Study of Single- and Double-Membrane Compartments Limpens, Ronald W. A. L.; van der Schaar, Hilde M.; Kumar, Darshan; Koster, Abraham J.; Snijder, Eric J.; van Kuppeveld, Frank J. M.; Bárcena, Montserrat 2011 2011-10-04 NONCOMM N PMC3187575 21972238.0 10.1128/mbio.00166-11 o32e9o0l 0.519931 Volmer_2010, den_Boon_2010, Hobman_1993, Weissenhorn_2013, Risco_2003 Sun_D_2016, Melia_2018
352 Jayabalan_2019 Alphavirus nsP3 ADP-ribosylhydrolase Activity Disrupts Stress Granule Formation Aravinth Kumar Jayabalan; Diane E. Griffin; Anthony K. L. Leung 2019 2019-06-20 BioRxiv N 10.1101/629881 n8sjpcbs 0.519160 Yasuda-Inoue_2013, Blank_2017, Meyerson_2017, Greene_2012, Stork_2011 Zhang_2015
353 Pan_W_2017 EIF3i affects vesicular stomatitis virus growth by interacting with matrix protein Pan, Wei; Song, Deguang; He, Wenqi; Lu, Huijun; Lan, Yungang; Li, Hongli; Gao, Feng; Zhao, Kui 2017 2017-12-31 PMC N PMC7117458 29173589.0 10.1016/j.vetmic.2017.10.021 9t8hf89d 0.519032 Ban_J_2018, Meyerson_2017, Trobaugh_2017, Volmer_2010, Yasuda-Inoue_2013 Zhang_2015
354 Garcia‐Moreno_2018 Unconventional RNA‐binding proteins step into the virus–host battlefront Garcia‐Moreno, Manuel; Järvelin, Aino I.; Castello, Alfredo 2018 2018-08-09 PMC N PMC7169762 30091184.0 10.1002/wrna.1498 36skq78k 0.518151 Trobaugh_2017, Yasuda-Inoue_2013, Rice_1992, Li_Z_2011, Taschuk_2020
355 Zúñiga_2009 Role of RNA chaperones in virus replication Zúñiga, Sonia; Sola, Isabel; Cruz, Jazmina L.G.; Enjuanes, Luis 2009 2009-02-28 PMC N PMC7114511 18675859.0 10.1016/j.virusres.2008.06.015 oa24b5to 0.517243 Stork_2011, den_Boon_2010, Rice_1992, Yasuda-Inoue_2013 Xia_H_2015
356 Mao_J_2019 Autophagy and Viral Infection Mao, Jingrong; Lin, Eena; He, Lian; Yu, Jiaming; Tan, Peng; Zhou, Yubin 2019 2019-11-15 PMC N PMC7122562 31728865.0 10.1007/978-981-15-0606-2_5 j2bb6eq8 0.516873 Lester_2014, Potgieter_1986, Kim_S_2018, Rajsbaum_2013 Lee_H_2008, Choi_2018, Shoji-Kawata_2009, Cheng_2014
357 Tenorio_2018 Reovirus σNS and μNS Proteins Remodel the Endoplasmic Reticulum to Build Replication Neo-Organelles Tenorio, Raquel; Fernández de Castro, Isabel; Knowlton, Jonathan J.; Zamora, Paula F.; Lee, Christopher H.; Mainou, Bernardo A.; Dermody, Terence S.; Risco, Cristina 2018 2018-08-07 COMM-USE N PMC6083906 30087167.0 10.1128/mbio.01253-18 qwr03j43 0.515233 UNKNOWN_1995, Hurley_2014, Weissenhorn_2013, Hobman_1993 Doyle_2018, Risco_2003, Neufeldt_2016
358 von_Brunn_2007 Analysis of Intraviral Protein-Protein Interactions of the SARS Coronavirus ORFeome von Brunn, Albrecht; Teepe, Carola; Simpson, Jeremy C.; Pepperkok, Rainer; Friedel, Caroline C.; Zimmer, Ralf; Roberts, Rhonda; Baric, Ralph; Haas, Jürgen 2007 2007-05-23 COMM-USE N PMC1868897 17520018.0 10.1371/journal.pone.0000459 dlmx12vt 0.515201 Yasuda-Inoue_2013, Trobaugh_2017, den_Boon_2010, Stork_2011, Volmer_2010 Kumar_2007, Zhang_2015
359 Berkhout_2006 The interplay between virus infection and the cellular RNA interference machinery Berkhout, Ben; Haasnoot, Joost 2006 2006-05-22 PMC N PMC7094296 16563388.0 10.1016/j.febslet.2006.02.070 9et0iwj4 0.514664 Trobaugh_2017, Shi_J_2012, Herbert_2016, Haasnoot_2010 Rothe_2010, Ma_Y_2007, Garcia_2014
360 Ahlquist_2005 Viral and host determinants of RNA virus vector replication and expression Ahlquist, Paul; Schwartz, Michael; Chen, Jianbo; Kushner, David; Hao, Linhui; Dye, Billy T. 2005 2005-03-07 PMC N PMC7115378 15734041.0 10.1016/j.vaccine.2004.11.005 oq25o4qr 0.514446 Rice_1992, den_Boon_2010, Trobaugh_2017, Berkhout_2006 Diaz_2012, Wulan_2015, Harak_2015
361 Melia_2019 Origins of Enterovirus Replication Organelles Established by Whole-Cell Electron Microscopy Melia, Charlotte E.; Peddie, Christopher J.; de Jong, Anja W. M.; Snijder, Eric J.; Collinson, Lucy M.; Koster, Abraham J.; van der Schaar, Hilde M.; van Kuppeveld, Frank J. M.; Bárcena, Montserrat 2019 2019-06-11 COMM-USE N PMC6561026 31186324.0 10.1128/mbio.00951-19 kymz4xru 0.514394 Weissenhorn_2013, UNKNOWN_1995, Volmer_2010, Hobman_1993, den_Boon_2010 Wulan_2015, Risco_2003, Tenorio_2018
362 Alam_2019 Rasputin a decade on and more promiscuous than ever? A review of G3BPs Alam, Umber; Kennedy, Derek 2019 2019-03-31 PMC N PMC7114234 30595162.0 10.1016/j.bbamcr.2018.09.001 4uyodkt8 0.514368 Haasnoot_2010, Trobaugh_2017, Berkhout_2006, Shi_J_2012, Rytkönen_2007 Zhang_2015, Sun_D_2016, Deng_2019
363 Dunn_2012 Chapter 9 HijAkt The PI3K/Akt Pathway in Virus Replication and Pathogenesis Dunn, Ewan F.; Connor, John H. 2012 2012-12-31 PMC N PMC7149925 22340720.0 10.1016/b978-0-12-396456-4.00002-x 26yc50h3 0.513035 Shi_J_2012, Berkhout_2006, Trobaugh_2017, Klein_2011 Cooray_2007, Fulcher_2011, Sun_D_2016
364 Rivas_2016 Shutoff of Host Gene Expression in Influenza A Virus and Herpesviruses: Similar Mechanisms and Common Themes Rivas, Hembly G.; Schmaling, Summer K.; Gaglia, Marta M. 2016 2016-04-16 COMM-USE N PMC4848596 27092522.0 10.3390/v8040102 44ecr3re 0.512725 Lester_2014, Shi_J_2012, Berkhout_2006, Trobaugh_2017 Gaucherand_2019, Gaucherand_2018, Chemudupati_2019
365 Tripp_2013 Respiratory Syncytial Virus (RSV) Modulation at the Virus-Host Interface Affects Immune Outcome and Disease Pathogenesis Tripp, Ralph A. 2013 2013-10-26 NONCOMM N PMC3817296 24198740.0 10.4110/in.2013.13.5.163 bp8v2c2o 0.512146 Potgieter_1986, Mao_J_2019, Lester_2014, Shi_J_2012, Kim_S_2018 Sedeyn_2019, Phares_2013, Schmidt_2018
366 Liao_2010 Ubiquitination and deubiquitination of NP protein regulates influenza A virus RNA replication Liao, Tsai-Ling; Wu, Chung-Yi; Su, Wen-Chi; Jeng, King-Song; Lai, Michael M C 2010 2010-10-05 PMC N PMC2989104 20924359.0 10.1038/emboj.2010.250 11xyqp0h 0.511617 Meyerson_2017, Ban_J_2018, Yasuda-Inoue_2013, Stork_2011 Chenon_2011, Deng_2019
367 Lum_K_2016 Proteomic approaches to uncovering virus–host protein interactions during the progression of viral infection Lum, Krystal K; Cristea, Ileana M 2016 2016-03-01 None N PMC4919574 26817613.0 10.1586/14789450.2016.1147353 4xdw4303 0.511133 Lester_2014, Conzelmann_1996, Trobaugh_2017, Berkhout_2006, Alcami_2000 Watanabe_2019, Zhou_2011, Zhang_2015, Durmuş_2017
368 Reggiori_2010 Coronaviruses Hijack the LC3-I-Positive EDEMosomes, ER-Derived Vesicles Exporting Short-Lived ERAD Regulators, for Replication Reggiori, Fulvio; Monastyrska, Iryna; Verheije, Monique H.; Calì, Tito; Ulasli, Mustafa; Bianchi, Siro; Bernasconi, Riccardo; de Haan, Cornelis A.M.; Molinari, Maurizio 2010 2010-06-17 None N PMC7103375 20542253.0 10.1016/j.chom.2010.05.013 t65hu6i8 0.509056 UNKNOWN_1995, Greene_2012, Hurley_2014, Weissenhorn_2013, Yasuda-Inoue_2013 Noack_2014, Neufeldt_2016
369 Song_2019 EIF4A2 interacts with the membrane protein of transmissible gastroenteritis coronavirus and plays a role in virus replication Song, Zhenhui; Yang, Yang; Wang, Li; Wang, Kai; Ran, Ling; Xie, Yilu; Huang, LeiShi; Yang, Zhou; Yuan, Peng; Yu, Qiuhan 2019 2019-04-30 PMC N PMC7111847 30583231.0 10.1016/j.rvsc.2018.12.005 sd5izamc 0.508095 Volmer_2010, Li_C_2013, Li_C_2014, Meyerson_2017, Ban_J_2018 Zhang_2015, Wang_2009, Kanjanahaluethai_2007
370 Wang_2009 Interaction of the Coronavirus Infectious Bronchitis Virus Membrane Protein with β-Actin and Its Implication in Virion Assembly and Budding Wang, Jibin; Fang, Shouguo; Xiao, Han; Chen, Bo; Tam, James P.; Liu, Ding Xiang 2009 2009-03-16 COMM-USE N PMC2653722 19287488.0 10.1371/journal.pone.0004908 eomm1sl5 0.506360 Volmer_2010, Meyerson_2017, den_Boon_2010, Kang_2009, Greene_2012 Zhang_2015
371 Mayer_2019 Hijacking the Supplies: Metabolism as a Novel Facet of Virus-Host Interaction Mayer, Katharina A.; Stöckl, Johannes; Zlabinger, Gerhard J.; Gualdoni, Guido A. 2019 2019-07-03 COMM-USE N PMC6617997 31333664.0 10.3389/fimmu.2019.01533 554zcjoq 0.506112 Berkhout_2006, Shi_J_2012, Cheng_2014, Postigo_2009, Wilson_2012 Watanabe_2019, Lin_L_2010, Giorda_2013
372 Liu_H_2009 SYNCRIP (synaptotagmin-binding, cytoplasmic RNA-interacting protein) is a host factor involved in hepatitis C virus RNA replication Liu, Helene Minyi; Aizaki, Hideki; Choi, Keum S.; Machida, Keigo; Ou, James J.-H.; Lai, Michael M.C. 2009 2009-04-10 None N PMC3099193 19232660.0 10.1016/j.virol.2009.01.018 h2asxv4j 0.505983 Yasuda-Inoue_2013, Stork_2011, Meyerson_2017, Masaki_2015 Bhullar_2014
373 Takahashi_2011 Function of Membrane Rafts in Viral Lifecycles and Host Cellular Response Takahashi, Tadanobu; Suzuki, Takashi 2011 2011-12-07 COMM-USE N PMC3235436 22191032.0 10.1155/2011/245090 96w28ygp 0.505413 den_Boon_2010, Tallmadge_2008, Ryu_W_2017, Lenard_2008, Potgieter_1986 Neufeldt_2016, Sze_C_2015, Sun_D_2016
374 Damas_2019 Functional Interplay between RNA Viruses and Non-Coding RNA in Mammals Damas, Nkerorema Djodji; Fossat, Nicolas; Scheel, Troels K. H. 2019 2019-01-14 COMM-USE N PMC6468702 30646609.0 10.3390/ncrna5010007 dr82eaoi 0.504697 Trobaugh_2017, Rice_1992, Berkhout_2006, Herbert_2016, den_Boon_2010 Wulan_2015, Masante_2015, Girardi_2013, Diaz_2012
375 Yasuhara_2016 Aptamers that bind specifically to human KPNA2 (importin-α1) and efficiently interfere with nuclear transport Yasuhara, Noriko; Kumar, Penmetcha K.R. 2016 2016-05-06 PMC N PMC7110145 27154959.0 10.1093/jb/mvw032 qabs3cs8 0.504620 Greene_2012, Yasuda-Inoue_2013, Blank_2017, Choudhury_2017, Volmer_2010 Fulcher_2011, Sato_2019
376 Shi_D_2014 Molecular Characterizations of Subcellular Localization Signals in the Nucleocapsid Protein of Porcine Epidemic Diarrhea Virus Shi, Da; Lv, Maojie; Chen, Jianfei; Shi, Hongyan; Zhang, Sha; Zhang, Xin; Feng, Li 2014 2014-03-13 COMM-USE N PMC3970149 24632575.0 10.3390/v6031253 mameyzih 0.504405 Volmer_2010, UNKNOWN_1993, Shi_S_2000, Li_C_2013, Kang_2009 Zhang_2015, Guo_Y_2003
377 Neuman_2016 Bioinformatics and functional analyses of coronavirus nonstructural proteins involved in the formation of replicative organelles Neuman, Benjamin W. 2016 2016-11-30 PMC N PMC7113682 27743916.0 10.1016/j.antiviral.2016.10.005 pg8u1hc2 0.502004 den_Boon_2010, Volmer_2010, Taschuk_2020, Yasuda-Inoue_2013 Zhang_2015, Kanjanahaluethai_2007
378 Liu_D_2007 Coronavirus envelope protein: A small membrane protein with multiple functions Liu, D. X.; Yuan, Q.; Liao, Y. 2007 2007-05-29 PMC N PMC7079843 17530462.0 10.1007/s00018-007-7103-1 j4oh1z8m 0.501622 Weissenhorn_2013, Hurley_2014, Trobaugh_2017, den_Boon_2010 Kanjanahaluethai_2007, Voß_D_2009
379 Neuman_2014 Does form meet function in the coronavirus replicative organelle? Neuman, Benjamin W.; Angelini, Megan M.; Buchmeier, Michael J. 2014 2014-11-30 PMC N PMC7127430 25037114.0 10.1016/j.tim.2014.06.003 6s01qplg 0.501174 den_Boon_2010, Trobaugh_2017, Volmer_2010, Rice_1992, Taschuk_2020 Wulan_2015, Diaz_2012, V’kovski_2015
380 Semrad_2010 Proteins with RNA Chaperone Activity: A World of Diverse Proteins with a Common Task—Impediment of RNA Misfolding Semrad, Katharina 2010 2010-12-26 COMM-USE N PMC3017892 21234377.0 10.1155/2011/532908 4ouhdjsr 0.500872 Choudhury_2017, Taschuk_2020, Yasuda-Inoue_2013, Stork_2011 Xia_H_2015, Yang_2015, Järvelin_2016
381 Yun_S_2013 Overview: Replication of porcine reproductive and respiratory syndrome virus Yun, Sang-Im; Lee, Young-Min 2013 2013-12-19 PMC N PMC7091224 24385346.0 10.1007/s12275-013-3431-z u2bbgn8k 0.500607 den_Boon_2010, Rice_1992, Potgieter_1986, Trobaugh_2017, Berkhout_2006 Song_2011, Valle-Casuso_2020
382 Kim_J_2015 Common and distinctive localization patterns of Crumbs polarity complex proteins in the mammalian eye Kim, Jin Young; Song, Ji Yun; Karnam, Santi; Park, Jun Young; Lee, Jamie JH; Kim, Seonhee; Cho, Seo-Hee 2015 2015-01-01 PMC N PMC5033123 25636444.0 10.1016/j.gep.2015.01.002 pkr65zg3 0.500567 Volmer_2010, Jonker_2018, Dubois_2016, Emmott_2009 Fu_J_2000, UNKNOWN_1994, Zhang_2015
383 Schatz_2014 Hijacking of an autophagy-like process is critical for the life cycle of a DNA virus infecting oceanic algal blooms Schatz, Daniella; Shemi, Adva; Rosenwasser, Shilo; Sabanay, Helena; Wolf, Sharon G; Ben-Dor, Shifra; Vardi, Assaf 2014 2014-09-07 COMM-USE N PMC4233938 25195618.0 10.1111/nph.13008 62a1d6vw 0.500500 den_Boon_2010, Trobaugh_2017, Berkhout_2006, Shi_J_2012, Klein_2011 Ding_2017, Ávila-Pérez_2019
384 Moerdyk-Schauwecker_2009 Analysis of virion associated host proteins in vesicular stomatitis virus using a proteomics approach Moerdyk-Schauwecker, Megan; Hwang, Sun-Il; Grdzelishvili, Valery Z 2009 2009-10-12 COMM-USE N PMC2770056 19821998.0 10.1186/1743-422x-6-166 7qrcah56 0.497713 Rice_1992, den_Boon_2010, Trobaugh_2017, Compton_2014, Volmer_2010 Zhang_2015, Kumar_2015, Ao_D_2015
385 Delgui_2017 A Novel Mechanism Underlying the Innate Immune Response Induction upon Viral-Dependent Replication of Host Cell mRNA: A Mistake of +sRNA Viruses' Replicases Delgui, Laura R.; Colombo, María I. 2017 2017-01-20 COMM-USE N PMC5247633 28164038.0 10.3389/fcimb.2017.00005 f3lp10lm 0.497412 Rice_1992, den_Boon_2010, Berkhout_2006, Trobaugh_2017, Herbert_2016 Neufeldt_2016, Chemudupati_2019, Bhullar_2014
386 Kong_2010 Proteomic analysis of purified coronavirus infectious bronchitis virus particles Kong, Qingming; Xue, Chunyi; Ren, Xiangpeng; Zhang, Chengwen; Li, Linlin; Shu, Dingming; Bi, Yingzuo; Cao, Yongchang 2010 2010-06-09 COMM-USE N PMC2909931 20534109.0 10.1186/1477-5956-8-29 7hiss0j3 0.497349 Volmer_2010, Rice_1992, Shi_S_2005, den_Boon_2010, Trobaugh_2017 Zhang_2015, Kumar_2015, Loa_C_2004, Ren_X_2008
387 Shaw_2008 Cellular Proteins in Influenza Virus Particles Shaw, Megan L.; Stone, Kathryn L.; Colangelo, Christopher M.; Gulcicek, Erol E.; Palese, Peter 2008 2008-06-06 COMM-USE N PMC2390764 18535660.0 10.1371/journal.ppat.1000085 f7eqdxpv 0.497247 Rice_1992, Volmer_2010, den_Boon_2010, Compton_2014, Trobaugh_2017 Zhang_2015, Wulan_2015
388 Rowland_2003 Nucleolar-cytoplasmic shuttling of PRRSV nucleocapsid protein: a simple case of molecular mimicry or the complex regulation by nuclear import, nucleolar localization and nuclear export signal sequences Rowland, Raymond R.R.; Yoo, Dongwan 2003 2003-09-30 PMC N PMC7127199 12921993.0 10.1016/s0168-1702(03)00161-8 05q8aki0 0.496542 Volmer_2010, Yasuda-Inoue_2013, Shi_S_2000, UNKNOWN_1993, Pong_2011 Wulan_2015, Zhang_2015, Fulcher_2011
389 Cook_2019 Location is everything: protein translocations as a viral infection strategy Cook, Katelyn C; Cristea, Ileana M 2019 2019-02-28 PMC N PMC6382524 30339987.0 10.1016/j.cbpa.2018.09.021 ghjzmeww 0.494913 Trobaugh_2017, Berkhout_2006, Shi_J_2012, Lester_2014, Kim_S_2018 Fulcher_2011, Zhang_2015, Grangeon_2012, Watanabe_2019
390 Fournier_2013 Are trans‐complementation systems suitable for hepatitis C virus life cycle studies? Fournier, C.; Duverlie, G.; Castelain, S. 2013 2013-02-14 PMC N PMC7167126 23490366.0 10.1111/jvh.12069 bvdsz626 0.493135 Rice_1992, Tallmadge_2008, Ryu_W_2017, den_Boon_2010, Trobaugh_2017
391 Chen_2019 The Eukaryotic Translation Initiation Factor 4F Complex Restricts Rotavirus Infection via Regulating the Expression of IRF1 and IRF7 Chen, Sunrui; Feng, Cui; Fang, Yan; Zhou, Xinying; Xu, Lei; Wang, Wenshi; Kong, Xiangdong; P. Peppelenbosch, Maikel; Pan, Qiuwei; Yin, Yuebang 2019 2019-03-29 COMM-USE N PMC6480131 30934842.0 10.3390/ijms20071580 mwcm2gzc 0.492229 Meyerson_2017, Yasuda-Inoue_2013, Ban_J_2018, Blank_2017, Trobaugh_2017 Sasvari_2011
392 Hwang_2012 Nondegradative Role of Atg5-Atg12/ Atg16L1 Autophagy Protein Complex in Antiviral Activity of Interferon Gamma Hwang, Seungmin; Maloney, Nicole S.; Bruinsma, Monique W.; Goel, Gautam; Duan, Erning; Zhang, Lei; Shrestha, Bimmi; Diamond, Michael S.; Dani, Adish; Sosnovtsev, Stanislav V.; Green, Kim Y.; Lopez-Otin, Carlos; Xavier, Ramnik J.; Thackray, Larissa B.; Virgin, Herbert W. 2012 2012-04-19 None N PMC3348177 22520467.0 10.1016/j.chom.2012.03.002 kftq3zfr 0.491673 Greene_2012, Ban_J_2018, Martín-Vicente_2017, Viswanathan_2010, Chen_2014 Zhao_2008, Park_2016
393 Yuan_2019 SREBP-dependent lipidomic reprogramming as a broad-spectrum antiviral target Yuan, Shuofeng; Chu, Hin; Chan, Jasper Fuk-Woo; Ye, Zi-Wei; Wen, Lei; Yan, Bingpeng; Lai, Pok-Man; Tee, Kah-Meng; Huang, Jingjing; Chen, Dongdong; Li, Cun; Zhao, Xiaoyu; Yang, Dong; Chiu, Man Chun; Yip, Cyril; Poon, Vincent Kwok-Man; Chan, Chris Chung-Sing; Sze, Kong-Hung; Zhou, Jie; Chan, Ivy Hau-Yee; Kok, Kin-Hang; To, Kelvin Kai-Wang; Kao, Richard Yi-Tsun; Lau, Johnson Yiu-Nam; Jin, Dong-Yan; Perlman, Stanley; Yuen, Kwok-Yung 2019 2019-01-10 None N PMC6328544 30631056.0 10.1038/s41467-018-08015-x m7toy4j0 0.491673 Berkhout_2006, Trobaugh_2017, Ban_J_2018, Lester_2014, Shi_J_2012 Mingorance_2018, Anderson_2020, Albert_2018
394 Prasanth_2020 Topoisomerase III-ß is required for efficient replication of positive-sense RNA viruses K. Reddisiva Prasanth; Minato Hirano; W. Samuel Fagg; Eileen T. McAnarney; Chao Shan; Xuping Xie; Adam Hage; Colette A. Pietzsch; Alexander Bukreyev; Ricardo Rajsbaum; Pei-Yong Shi; Mark T. Bedford; Shelton S. Bradrick; Vineet Menachery; Mariano A. Garcia-Blanco 2020 2020-03-27 BioRxiv Y 10.1101/2020.03.24.005900 a0xfb9l4 0.490385 Stork_2011, Yasuda-Inoue_2013, Meyerson_2017, Li_C_2014, den_Boon_2010 Jeang_2006, Case_2017, Sasvari_2009
395 Thomas_2013 Chikungunya virus capsid protein contains nuclear import and export signals Thomas, Saijo; Rai, Jagdish; John, Lijo; Schaefer, Stephan; Pützer, Brigitte M; Herchenröder, Ottmar 2013 2013-08-28 COMM-USE N PMC3765696 23984714.0 10.1186/1743-422x-10-269 79faaz72 0.488133 Volmer_2010, Greene_2012, Yasuda-Inoue_2013, UNKNOWN_1995, UNKNOWN_1993 Zhang_2015, Guo_Y_2003, Fulcher_2011
396 Urbanowski_2008 Modulation of signaling pathways by RNA virus capsid proteins Urbanowski, Matthew D.; Ilkow, Carolina S.; Hobman, Tom C. 2008 2008-07-31 PMC N PMC7127581 18258415.0 10.1016/j.cellsig.2007.12.018 1k3h4xks 0.488041 den_Boon_2010, Trobaugh_2017, Rice_1992, Taschuk_2020 Wulan_2015, Neufeldt_2016, Zhang_2015, Ni_P_2013
397 Sze_C_2015 Viral Membrane Channels: Role and Function in the Virus Life Cycle Sze, Ching Wooen; Tan, Yee-Joo 2015 2015-06-23 COMM-USE N PMC4488738 26110585.0 10.3390/v7062771 0gkonrzw 0.487726 den_Boon_2010, Shi_J_2012, Trobaugh_2017, Kim_S_2018, Klein_2011 Giorda_2013, Fulcher_2011, Sun_D_2016
398 Desrochers_2018 ABPP and Host–Virus Interactions Desrochers, Geneviève F.; Pezacki, John Paul 2018 2018-09-23 PMC N PMC7121783 30244323.0 10.1007/82_2018_139 doxdnptd 0.487540 Trobaugh_2017, Berkhout_2006, Lester_2014, Mao_J_2019, Kindler_2014 Sun_D_2016, Galluzzi_2008, A_Abdullah_2018, Tyler_1987
399 Mollet_2008 Translationally Repressed mRNA Transiently Cycles through Stress Granules during Stress Mollet, Stephanie; Cougot, Nicolas; Wilczynska, Ania; Dautry, François; Kress, Michel; Bertrand, Edouard; Weil, Dominique 2008 2008-10-01 PMC N PMC2555929 18632980.0 10.1091/mbc.e08-05-0499 rdb4xpyc 0.487540 Stoecklin_2012, Dubois_2016, Volmer_2010, UNKNOWN_1995 Stoecklin_2012
400 Lenard_2008 Viral Membranes Lenard, J. 2008 2008-12-31 PMC N PMC7149422 10.1016/b978-012374410-4.00530-6 3wz7k4vy 0.487394 den_Boon_2010, Tallmadge_2008, Compton_2014, Rice_1992 Villanueva_2005, Sze_C_2015, Wulan_2015, Giorda_2013
401 Cann_2016 Chapter 5 Expression Cann, Alan J. 2016 2016-12-31 PMC N 10.1016/b978-0-12-801946-7.00005-5 d47rpzcs 0.486280 Trobaugh_2017, Haasnoot_2010, Berkhout_2006, Herbert_2016
402 Oudshoorn_2016 Antiviral Innate Immune Response Interferes with the Formation of Replication-Associated Membrane Structures Induced by a Positive-Strand RNA Virus Oudshoorn, Diede; van der Hoeven, Barbara; Limpens, Ronald W. A. L.; Beugeling, Corrine; Snijder, Eric J.; Bárcena, Montserrat; Kikkert, Marjolein 2016 2016-12-06 COMM-USE N PMC5142621 27923923.0 10.1128/mbio.01991-16 h5xupuvu 0.485431 den_Boon_2010, Klein_2011, Trobaugh_2017, Berkhout_2006, Volmer_2010 Neufeldt_2016, Uzri_2013
403 Shiek_2020 Interplay of host regulatory network on SARS-CoV-2 binding and replication machinery Ahmed Shiek; Prabu Paramasivam; Kamal Raj; Vishal Kumar 2020 2020-04-20 BioRxiv Y 10.1101/2020.04.20.050138 vb53bih9 0.484915 Trobaugh_2017, Berkhout_2006, Haasnoot_2010, Shi_J_2012, Abernathy_2015
404 Li_Z_2009 Translation Elongation Factor 1A is a component of the tombusvirus replicase complex and affects the stability of the p33 replication co-factor Li, Zhenghe; Pogany, Judit; Panavas, Tadas; Xu, Kai; Esposito, Anthony M.; Kinzy, Terri Gross; Nagy, Peter D. 2009 2009-03-01 PMC N PMC2785496 19131084.0 10.1016/j.virol.2008.11.041 06qfbvlr 0.484888 Stork_2011, Yasuda-Inoue_2013, Rice_1992, Li_Z_2010 Sasvari_2011, Li_Z_2010
405 Puschnik_2017 A CRISPR toolbox to study virus–host interactions Puschnik, Andreas S.; Majzoub, Karim; Ooi, Yaw Shin; Carette, Jan E. 2017 2017-04-19 None N PMC5800792 28420884.0 10.1038/nrmicro.2017.29 vb7380tp 0.483898 Rice_1992, Tallmadge_2008, Ryu_W_2017, den_Boon_2010, Conzelmann_1996 Giorda_2013, Moens_2009, Meliopoulos_2012
406 Abernathy_2014 Gammaherpesviral Gene Expression and Virion Composition Are Broadly Controlled by Accelerated mRNA Degradation Abernathy, Emma; Clyde, Karen; Yeasmin, Rukhsana; Krug, Laurie T.; Burlingame, Al; Coscoy, Laurent; Glaunsinger, Britt 2014 2014-01-16 COMM-USE N PMC3894220 24453974.0 10.1371/journal.ppat.1003882 p9bdjni9 0.482495 Trobaugh_2017, Rice_1992, Herbert_2016, Haasnoot_2010, Abernathy_2015 Richner_2011, Case_2017, Sun_D_2016
407 Clayton_2013 Mammalian phosphatidylinositol 4-kinases as modulators of membrane trafficking and lipid signaling networks Clayton, Emma L.; Minogue, Shane; Waugh, Mark G. 2013 2013-07-23 PMC N PMC3989048 23608234.0 10.1016/j.plipres.2013.04.002 ni9u8lk4 0.482425 Greene_2012, Pridgeon_2008, Lin_L_2019, Jonker_2018 Delang_2012, Fulcher_2011
408 Hyodo_2015 Phosphatidic Acid Produced by Phospholipase D Promotes RNA Replication of a Plant RNA Virus Hyodo, Kiwamu; Taniguchi, Takako; Manabe, Yuki; Kaido, Masanori; Mise, Kazuyuki; Sugawara, Tatsuya; Taniguchi, Hisaaki; Okuno, Tetsuro 2015 2015-05-28 COMM-USE N PMC4447390 26020241.0 10.1371/journal.ppat.1004909 mimxdis4 0.481435 den_Boon_2010, Stork_2011, Rice_1992, Li_Z_2010, Meyerson_2017 Diaz_2012, Mingorance_2018
409 Ruch_2012 The Coronavirus E Protein: Assembly and Beyond Ruch, Travis R.; Machamer, Carolyn E. 2012 2012-03-08 COMM-USE N PMC3347032 22590676.0 10.3390/v4030363 gs69znat 0.481334 Volmer_2010, Trobaugh_2017, Berkhout_2006, Haasnoot_2010 Jourdan_2006, Ruch_2012, Voß_D_2009, Narayanan_2015
410 Romero‐López_2013 Unmasking the information encoded as structural motifs of viral RNA genomes: a potential antiviral target Romero‐López, Cristina; Berzal‐Herranz, Alfredo 2013 2013-08-27 PMC N PMC7169113 23983005.0 10.1002/rmv.1756 4lq8wbtl 0.481046 Rice_1992, Trobaugh_2017, den_Boon_2010, Stork_2011, Yasuda-Inoue_2013
411 Grunewald_2018 The coronavirus nucleocapsid protein is ADP-ribosylated Grunewald, Matthew E.; Fehr, Anthony R.; Athmer, Jeremiah; Perlman, Stanley 2018 2018-04-30 PMC N PMC5871557 29199039.0 10.1016/j.virol.2017.11.020 8hw80qx8 0.481046 Tallmadge_2008, Lu_P_2016, Yasui_2016, Li_C_2014, Meyerson_2017 Zhang_2015
412 Phongphaew_2017 Valosin-containing protein (VCP/p97) plays a role in the replication of West Nile virus Phongphaew, Wallaya; Kobayashi, Shintaro; Sasaki, Michihito; Carr, Michael; Hall, William W.; Orba, Yasuko; Sawa, Hirofumi 2017 2017-01-15 PMC N PMC7114552 27914931.0 10.1016/j.virusres.2016.11.029 mqry76ef 0.480840 Greene_2012, Kumar_2016, Ban_J_2018, Meyerson_2017, Volmer_2010 Yan_J_2020, Zhang_2015, Sun_D_2016
413 Qi_D_2018 Virus infection-induced host mRNA degradation and potential application of live cell imaging Qi, Dan; Guan, Jitian; Wu, Erxi 2018 2018-12-31 PMC N PMC7104030 10.1016/j.jrid.2018.12.002 fhmhpobi 0.480555 Berkhout_2006, Trobaugh_2017, Potgieter_1986, Shi_J_2012, Mao_J_2019 Case_2017, Galluzzi_2008, Lee_B_2012
414 Cross_2019 RNA regulatory processes in RNA virus biology Cross, Shaun T.; Michalski, Daniel; Miller, Megan R.; Wilusz, Jeffrey 2019 2019-04-29 PMC N PMC6697219 31034160.0 10.1002/wrna.1536 w5kcno1b 0.480272 Trobaugh_2017, Haasnoot_2010, Berkhout_2006, Herbert_2016, Abernathy_2015
415 Chatel-Chaix_2016 Dengue Virus Perturbs Mitochondrial Morphodynamics to Dampen Innate Immune Responses Chatel-Chaix, Laurent; Cortese, Mirko; Romero-Brey, Inés; Bender, Silke; Neufeldt, Christopher John; Fischl, Wolfgang; Scaturro, Pietro; Schieber, Nicole; Schwab, Yannick; Fischer, Bernd; Ruggieri, Alessia; Bartenschlager, Ralf 2016 2016-09-14 None N PMC7105029 27545046.0 10.1016/j.chom.2016.07.008 hh3bc76z 0.479889 den_Boon_2010, Greene_2012, Mao_J_2019, Meyerson_2017, Compton_2014 Case_2017
416 Grossegesse_2018 Global ubiquitination analysis reveals extensive modification and proteasomal degradation of cowpox virus proteins, but preservation of viral cores Grossegesse, Marica; Doellinger, Joerg; Fritsch, Annemarie; Laue, Michael; Piesker, Janett; Schaade, Lars; Nitsche, Andreas 2018 2018-01-29 None N PMC5788924 29379051.0 10.1038/s41598-018-20130-9 qb7umsyu 0.479629 Meyerson_2017, Greene_2012, Ban_J_2018, den_Boon_2010 Deng_2019, Zhang_2015, Yu_L_2017, Yan_J_2020
417 Dial_2019 Coxsackievirus B3 Responds to Polyamine Depletion via Enhancement of 2A and 3C Protease Activity Dial, Courtney N.; Tate, Patrick M.; Kicmal, Thomas M.; Mounce, Bryan C. 2019 2019-04-30 COMM-USE N PMC6563312 31052199.0 10.3390/v11050403 sch7zhx7 0.479629 Trobaugh_2017, Berkhout_2006, Yasuda-Inoue_2013, Stork_2011, Haasnoot_2010 Sun_D_2016, van_der_Linden_2014, Deng_2019
418 Volmer_2010 Nucleolar localization of influenza A NS1: striking differences between mammalian and avian cells Volmer, Romain; Mazel-Sanchez, Beryl; Volmer, Christelle; Soubies, Sébastien M; Guérin, Jean-Luc 2010 2010-03-17 COMM-USE N PMC2847567 20236536.0 10.1186/1743-422x-7-63 dwjijmwz 0.477946 Shi_S_2000, Yasuda-Inoue_2013, Terrier_2016, den_Boon_2010 Timani_2005, Wulan_2015
419 Kou_Y_2006 Hepatitis C virus NS4A inhibits cap-dependent and the viral IRES-mediated translation through interacting with eukaryotic elongation factor 1A Kou, Yi-Hen; Chou, Shang-Min; Wang, Yi-Ming; Chang, Ya-Tzu; Huang, Shao-Yong; Jung, Mei-Ying; Huang, Yu-Hsu; Chen, Mei-Ru; Chang, Ming-Fu; Chang, Shin C. 2006 2006-08-23 PMC N PMC7088589 16927014.0 10.1007/s11373-006-9104-8 u2lwgyyf 0.477776 Kang_2009, Pong_2011, Yasuda-Inoue_2013, Meyerson_2017, Stork_2011
420 Stępiński_2014 Functional ultrastructure of the plant nucleolus Stępiński, Dariusz 2014 2014-04-23 PMC N PMC4209244 24756369.0 10.1007/s00709-014-0648-6 gbwz7225 0.477776 Dubois_2016, Volmer_2010, Emmott_2009, Brown_2008, Sirri_2007 Sirri_2007, Dubois_2016
421 Ohta_2011 Mitochondria and viruses Ohta, Akane; Nishiyama, Yukihiro 2011 2011-01-31 PMC N PMC7105242 20813204.0 10.1016/j.mito.2010.08.006 i6o3oor1 0.476498 Shi_J_2012, Lester_2014, Taschuk_2020, Kim_S_2018 Tiku_2020, Lai_J_2018, Galluzzi_2008, Kim_S_2018
422 Zheng_2012 Current Approaches on Viral Infection: Proteomics and Functional Validations Zheng, Jie; Tan, Boon Huan; Sugrue, Richard; Tang, Kai 2012 2012-11-16 COMM-USE N PMC3499792 23162545.0 10.3389/fmicb.2012.00393 1grbdlib 0.476373 Berkhout_2006, Trobaugh_2017, Lester_2014, Shi_J_2012, Haasnoot_2010 Watanabe_2019, Zhou_2011, Ding_2012, McDermott_2016
423 Zhao_2011 Virus interactions with human signal transduction pathways Zhao, Zhongming; Xia, Junfeng; Tastan, Oznur; Singh, Irtisha; Kshirsagar, Meghana; Carbonell, Jaime; Klein-Seetharaman, Judith 2011 2011-01-01 PMC N PMC3407688 21330695.0 10.1504/ijcbdd.2011.038658 titmz5jo 0.473254 Berkhout_2006, Haasnoot_2010, Trobaugh_2017, Naito_2007 Durmuş_2017, Zhang_2015, Chemudupati_2019, Kumar_2018
424 Wong_2020 Manipulation of autophagy by (+) RNA viruses Wong, Ho Him; Sanyal, Sumana 2020 2020-05-31 PMC N 10.1016/j.semcdb.2019.07.013 zyw5aukk 0.472653 Shi_J_2012, Berkhout_2006, Cheng_2014, Kim_S_2018, Lester_2014 Lin_L_2010, Espert_2007, Ávila-Pérez_2019
425 Hull_2014 Chapter 7 Replication of Plant Viruses Hull, Roger 2014 2014-12-31 PMC N 10.1016/b978-0-12-384871-0.00007-8 qbm5tn4t 0.472532 den_Boon_2010, Trobaugh_2017, Rice_1992, Berkhout_2006
426 Fung_2016 Regulation of Stress Responses and Translational Control by Coronavirus Fung, To Sing; Liao, Ying; Liu, Ding Xiang 2016 2016-07-04 COMM-USE N PMC4974519 27384577.0 10.3390/v8070184 vj3wk150 0.472024 Choi_2020, Lester_2014, Mao_J_2019, Klein_2011, Shi_J_2012 Cervantes-Ortiz_2016
427 Nieva_2012 Viroporins: structure and biological functions Nieva, José Luis; Madan, Vanesa; Carrasco, Luis 2012 2012-07-02 PMC N PMC7097105 22751485.0 10.1038/nrmicro2820 qhx330ig 0.470674 den_Boon_2010, Rice_1992, Trobaugh_2017, Volmer_2010, Compton_2014 Royle_2015, Ao_D_2015, Sun_D_2016
428 White_2006 Identification of mouse hepatitis coronavirus A59 nucleocapsid protein phosphorylation sites White, Tiana C.; Yi, Zhengping; Hogue, Brenda G. 2006 2006-01-01 None N PMC3764311 17037524.0 10.1007/978-0-387-33012-9_28 mivgokj0 0.470649 Kang_2009, Meyerson_2017, Volmer_2010, Kumar_2016, Stork_2011 White_2007, Zhang_2015
429 Zhang_2013 Long noncoding RNAs and viral infections Zhang, Quan; Jeang, Kuan-Teh 2013 2013-03-31 PMC N PMC3641704 23645970.0 10.1016/j.biomed.2013.01.001 duu77yzu 0.468862 Trobaugh_2017, Yasuda-Inoue_2013, Wang_2017, Poltronieri_2015 Liu_W_2017, Poltronieri_2015, Trypsteen_2016, Lamsisi_2020
430 Mesters_2006 Viral enzymes Mesters, Jeroen R; Tan, Jinzhi; Hilgenfeld, Rolf 2006 2006-12-31 PMC N PMC7127120 17085042.0 10.1016/j.sbi.2006.10.010 2gxmhwit 0.468804 den_Boon_2010, Denison_2008, Rice_1992, Berkhout_2006, Trobaugh_2017 Jeang_2006, Diaz_2012, Wulan_2015, Sun_D_2016
431 Yip_S_2011 The Multifunctional Nucleolar Protein Nucleophosmin/NPM/B23 and the Nucleoplasmin Family of Proteins Yip, Shea Ping; Siu, Parco M.; Leung, Polly H. M.; Zhao, Yanxiang; Yung, Benjamin Y. M. 2011 2011-05-23 PMC N PMC7121557 10.1007/978-1-4614-0514-6_10 qpdy1guy 0.468494 Dubois_2016, Blank_2017, Volmer_2010, Haasnoot_2010, Yasuda-Inoue_2013 Zhang_2015, Fulcher_2011
432 Romero-Brey_2016 Endoplasmic Reticulum: The Favorite Intracellular Niche for Viral Replication and Assembly Romero-Brey, Inés; Bartenschlager, Ralf 2016 2016-06-07 COMM-USE N PMC4926180 27338443.0 10.3390/v8060160 dfdypeqr 0.468387 Weissenhorn_2013, den_Boon_2010, UNKNOWN_1995, Volmer_2010, Hobman_1993 Tenorio_2018, Diaz_2012, Neufeldt_2016, Wulan_2015
433 Zhou_2009 Viral calciomics: Interplays between Ca2+ and virus Zhou, Yubin; Frey, Teryl K.; Yang, Jenny J. 2009 2009-07-31 None N PMC3449087 19535138.0 10.1016/j.ceca.2009.05.005 jbzqem3m 0.468273 Ivarsson_2012, Taschuk_2020, Trobaugh_2017, Volmer_2010, Tessier_2019 Zhang_2015, Sun_D_2016
434 Lindner_2007 Deubiquitination in virus infection Lindner, Holger A. 2007 2007-06-05 PMC N PMC7103280 17291557.0 10.1016/j.virol.2006.12.035 ogs4mq0v 0.467763 Choudhury_2017, Taschuk_2020, Blank_2017, El_Motiam_2019 Bailey-Elkin_2017, Watanabe_2019, Fung_2018, Wimmer_2015
435 Zhang_2014 The Regulation of Autophagy by Influenza A Virus Zhang, Rong; Chi, Xiaojuan; Wang, Song; Qi, Baomin; Yu, Xiaoqiang; Chen, Ji-Long 2014 2014-03-23 COMM-USE N PMC3980786 24779013.0 10.1155/2014/498083 f76ktynl 0.467752 Lu_P_2016, Yasui_2016, Potgieter_1986, Walker_2010, Mao_J_2019 Espert_2007, Aweya_2013, Ding_2017
436 Gammon_2014 A single vertebrate DNA virus protein disarms invertebrate immunity to RNA virus infection Gammon, Don B; Duraffour, Sophie; Rozelle, Daniel K; Hehnly, Heidi; Sharma, Rita; Sparks, Michael E; West, Cara C; Chen, Ying; Moresco, James J; Andrei, Graciela; Connor, John H; Conte, Darryl; Gundersen-Rindal, Dawn E; Marshall, William L; Yates, John R; Silverman, Neal; Mello, Craig C 2014 2014-06-25 COMM-USE N PMC4112549 24966209.0 10.7554/elife.02910 e6sib9ym 0.466658 Tallmadge_2008, Rice_1992, den_Boon_2010, Compton_2014, Meyerson_2017 Case_2017, Chemudupati_2019
437 Farhat_2017 Identification of GBF1 as a cellular factor required for hepatitis E virus RNA replication Farhat, Rayan; Ankavay, Maliki; Lebsir, Nadjet; Gouttenoire, Jérôme; Jackson, Catherine L.; Wychowski, Czeslaw; Moradpour, Darius; Dubuisson, Jean; Rouillé, Yves; Cocquerel, Laurence 2017 2017-11-17 PMC N PMC7162332 29112323.0 10.1111/cmi.12804 ubyb3nl7 0.465625 Yasuda-Inoue_2013, Volmer_2010, Meyerson_2017, Belov_2010, Li_C_2013
438 Salas-Benito_2015 Viral Interference and Persistence in Mosquito-Borne Flaviviruses Salas-Benito, Juan Santiago; De Nova-Ocampo, Mónica 2015 2015-10-25 COMM-USE N PMC4637105 26583158.0 10.1155/2015/873404 662lpdx5 0.465309 Lu_P_2016, Potgieter_1986, Ryu_W_2017, Lindqvist_2018, Berkhout_2006 Mlera_2014, Jung_2019, Valle-Casuso_2020
439 Merino‐Gracia_2011 The association of viral proteins with host cell dynein components during virus infection Merino‐Gracia, Javier; García‐Mayoral, María F.; Rodríguez‐Crespo, Ignacio 2011 2011-08-08 PMC N PMC7164101 21777384.0 10.1111/j.1742-4658.2011.08252.x efi8s46k 0.463527 UNKNOWN_1995, Volmer_2010, Hobman_1993, Weissenhorn_2013, Greene_2012
440 Sun_D_2016 Roles of the Picornaviral 3C Proteinase in the Viral Life Cycle and Host Cells Sun, Di; Chen, Shun; Cheng, Anchun; Wang, Mingshu 2016 2016-03-17 COMM-USE N PMC4810272 26999188.0 10.3390/v8030082 07nfb69o 0.461996 Trobaugh_2017, Berkhout_2006, den_Boon_2010, Haasnoot_2010, Taschuk_2020 van_der_Linden_2014, Sun_D_2019, Zhang_2015
441 Pandey_2019 GTPase-activating protein-binding protein 1 (G3BP1) plays an antiviral role against porcine epidemic diarrhea virus Pandey, Kabita; Zhong, Shuhong; Diel, Diego G.; Hou, Yixuan; Wang, Qiuhong; Nelson, Eric; Wang, Xiuqing 2019 2019-09-30 PMC N PMC7117524 31500725.0 10.1016/j.vetmic.2019.108392 6p6l06rm 0.461456 Meyerson_2017, Ban_J_2018, Yasuda-Inoue_2013, Li_C_2013, Li_C_2014
442 Gerold_2016 Decoding protein networks during virus entry by quantitative proteomics Gerold, Gisa; Bruening, Janina; Pietschmann, Thomas 2016 2016-06-15 PMC N PMC4914609 26365680.0 10.1016/j.virusres.2015.09.006 9bvyp21d 0.461448 Trobaugh_2017, Berkhout_2006, Tessier_2019, UNKNOWN_2004, Cullen_2009 Zhang_2015, Vigerust_2011, Popescu_2011, Fulcher_2011
443 Li_F_2005 Sumoylation of the nucleocapsid protein of severe acute respiratory syndrome coronavirus Li, Frank Qisheng; Xiao, Han; Tam, James P.; Liu, D.X. 2005 2005-04-25 PMC N PMC7094623 15848177.0 10.1016/j.febslet.2005.03.039 f6mlvl56 0.461425 Meyerson_2017, Volmer_2010, Pong_2011, Ban_J_2018, Kang_2009 Zhang_2015, Voß_D_2009, Kanjanahaluethai_2007, Ren_A_2004
444 Pombo_2018 Perturbation of Intracellular Cholesterol and Fatty Acid Homeostasis During Flavivirus Infections Pombo, Joao Palma; Sanyal, Sumana 2018 2018-06-04 COMM-USE N PMC5994796 29915602.0 10.3389/fimmu.2018.01276 w39f584z 0.461408 Lester_2014, Shi_J_2012, Berkhout_2006, Mao_J_2019, Kim_S_2018 Keshavarz_2020, Mingorance_2018
445 Amaya_2014 Proteomic strategies for the discovery of novel diagnostic and therapeutic targets for infectious diseases Amaya, Moushimi; Baer, Alan; Voss, Kelsey; Campbell, Catherine; Mueller, Claudius; Bailey, Charles; Kehn Hall, Kylene; Petricoin, Emanuel; Narayanan, Aarthi 2014 2014-07-01 PMC N PMC7108530 24488789.0 10.1111/2049-632x.12150 qerm5cpo 0.460836 Lester_2014, Berkhout_2006, Trobaugh_2017, UNKNOWN_2004, Postigo_2009 Zheng_2012, Vigerust_2011, Martinez-Martin_2017, Zheng_2011
446 Bartlam_2005 Structural insights into SARS coronavirus proteins Bartlam, Mark; Yang, Haitao; Rao, Zihe 2005 2005-12-31 PMC N PMC7127763 16263266.0 10.1016/j.sbi.2005.10.004 mnyqogdw 0.460520 Rice_1992, Trobaugh_2017, den_Boon_2010, Taschuk_2020, Haasnoot_2010 Graham_2008, Niemeyer_2018, Narayanan_2008, Kumar_2007
447 Modrow_2013 Viruses: Definition, Structure, Classification Modrow, Susanne; Falke, Dietrich; Truyen, Uwe; Schätzl, Hermann 2013 2013-08-12 PMC N PMC7123905 10.1007/978-3-642-20718-1_2 37f9y9ib 0.459314 Denison_2008, den_Boon_2010, Payne_2017, Rice_1992, Bahir_2009 Wulan_2015, Neufeldt_2016, Kristensen_2015, Chemudupati_2019
448 Li_S_2015 eEF1A Interacts with the NS5A Protein and Inhibits the Growth of Classical Swine Fever Virus Li, Su; Feng, Shuo; Wang, Jing-Han; He, Wen-Rui; Qin, Hua-Yang; Dong, Hong; Li, Lian-Feng; Yu, Shao-Xiong; Li, Yongfeng; Qiu, Hua-Ji 2015 2015-08-10 COMM-USE N PMC4576194 26266418.0 10.3390/v7082833 iv2dcpqj 0.459314 Yasuda-Inoue_2013, Meyerson_2017, Stork_2011, Pong_2011, Kang_2009 Yan_J_2020
449 Sir_D_2010 Autophagy in viral replication and pathogenesis Sir, Donna; Ou, Jing-hsiung James 2010 2010-01-08 None N PMC3115743 20077024.0 10.1007/s10059-010-0014-2 m1wm72do 0.458073 Shi_J_2012, Kim_S_2018, Lester_2014, Cheng_2014 Cheng_2014, Lin_L_2010, Lee_H_2008, Espert_2007
450 Doms_2016 Chapter 3 Basic Concepts A Step-by-Step Guide to Viral Infection Doms, Robert W. 2016 2016-12-31 PMC N PMC7150246 10.1016/b978-0-12-800964-2.00003-3 1jztk9gl 0.457763 Potgieter_1986, Berkhout_2006, Mao_J_2019, Lester_2014, Shi_J_2012 Galluzzi_2008, Casasnovas_2013, Rott_1987
451 Wang_2014 Interactome Profile of the Host Cellular Proteins and the Nonstructural Protein 2 of Porcine Reproductive and Respiratory Syndrome Virus Wang, Li; Zhou, Lei; Zhang, Han; Li, Yan; Ge, Xinna; Guo, Xin; Yu, Kangzhen; Yang, Hanchun 2014 2014-06-05 COMM-USE N PMC4047090 24901321.0 10.1371/journal.pone.0099176 ivz4r389 0.456812 Trobaugh_2017, Ban_J_2018, Shi_S_2005, Rice_1992, Yasuda-Inoue_2013 Dong_2014, Zhang_2015
452 Wang_2017 Viral lncRNA: A regulatory molecule for controlling virus life cycle Wang, Ziqiang; Zhao, Yiwan; Zhang, Yaou 2017 2017-03-23 None N PMC6096409 30159419.0 10.1016/j.ncrna.2017.03.002 213ddk0s 0.456711 Trobaugh_2017, Haasnoot_2010, Berkhout_2006, Shi_J_2012, Herbert_2016 Trypsteen_2016, Lamsisi_2020, Masante_2015, Chavez-Calvillo_2018
453 Sanz_2014 Inhibition of host protein synthesis by Sindbis virus: correlation with viral RNA replication and release of nuclear proteins to the cytoplasm Sanz, Miguel A.; García‐Moreno, Manuel; Carrasco, Luis 2014 2014-11-19 PMC N PMC7162411 25329362.0 10.1111/cmi.12381 4bpdfgau 0.456520 Meyerson_2017, Yasuda-Inoue_2013, Stork_2011, Volmer_2010, Kang_2009
454 Belov_2010 Poliovirus Replication Requires the N-terminus but not the Catalytic Sec7 Domain of ArfGEF GBF1 Belov, George A.; Kovtunovych, Gennadiy; Jackson, Catherine L.; Ehrenfeld, Ellie 2010 2010-05-20 None N PMC2945620 20497182.0 10.1111/j.1462-5822.2010.01482.x lxb2otpr 0.456089 Greene_2012, UNKNOWN_1995, Kumar_2016, Ban_J_2018 Yan_J_2020
455 Zhao_2016 Influenza B virus non-structural protein 1 counteracts ISG15 antiviral activity by sequestering ISGylated viral proteins Zhao, Chen; Sridharan, Haripriya; Chen, Ran; Baker, Darren P.; Wang, Shanshan; Krug, Robert M. 2016 2016-09-02 None N PMC5025834 27587337.0 10.1038/ncomms12754 v0y1g8uc 0.455937 Meyerson_2017, Ban_J_2018, Stork_2011, Yasuda-Inoue_2013 Popescu_2011
456 Lakdawala_2014 Influenza A Virus Assembly Intermediates Fuse in the Cytoplasm Lakdawala, Seema S.; Wu, Yicong; Wawrzusin, Peter; Kabat, Juraj; Broadbent, Andrew J.; Lamirande, Elaine W.; Fodor, Ervin; Altan-Bonnet, Nihal; Shroff, Hari; Subbarao, Kanta 2014 2014-03-06 COMM-USE N PMC3946384 24603687.0 10.1371/journal.ppat.1003971 mgvadkjv 0.455479 Volmer_2010, den_Boon_2010, Terrier_2016, Quiner_2010 Wulan_2015
457 Danthi_2011 Enter the kill zone: Initiation of death signaling during virus entry Danthi, Pranav 2011 2011-03-15 PMC N PMC7126532 21262519.0 10.1016/j.virol.2010.12.043 0cnjgec4 0.455389 Mao_J_2019, Kim_S_2018, Klein_2011, Trobaugh_2017 Bagga_2014, Galluzzi_2008, Yuan_2016, Giorda_2013
458 Meng_2012 Newcastle disease virus triggers autophagy in U251 glioma cells to enhance virus replication Meng, Chunchun; Zhou, Zhizhi; Jiang, Ke; Yu, Shengqing; Jia, Lijun; Wu, Yantao; Liu, Yanqing; Meng, Songshu; Ding, Chan 2012 2012-03-08 PMC N PMC7087167 22398914.0 10.1007/s00705-012-1270-6 hrurycel 0.455201 Ban_J_2018, Greene_2012, Perez_Vidakovics_2019, Meyerson_2017, Berkhout_2006 Ding_2017, Ávila-Pérez_2019
459 Comas-Garcia_2019 Packaging of Genomic RNA in Positive-Sense Single-Stranded RNA Viruses: A Complex Story Comas-Garcia, Mauricio 2019 2019-03-13 COMM-USE N PMC6466141 30871184.0 10.3390/v11030253 koo0d6g9 0.453314 den_Boon_2010, Stork_2011, Rice_1992, Trobaugh_2017, Payne_2017 Bhullar_2014
460 Mohammadi_2009 The lactate dehydrogenase-elevating virus capsid protein is a nuclear–cytoplasmic protein Mohammadi, Hakimeh; Sharif, Shayan; Rowland, Raymond R.; Yoo, Dongwan 2009 2009-06-11 PMC N PMC7087266 19517211.0 10.1007/s00705-009-0410-0 332khr4a 0.453027 Volmer_2010, UNKNOWN_1993, UNKNOWN_1987, UNKNOWN_1993, UNKNOWN_1993 Zhang_2015, Guo_Y_2003, Wulan_2015, Godeny_1990
461 Shi_D_2017 Nucleocapsid Interacts with NPM1 and Protects it from Proteolytic Cleavage, Enhancing Cell Survival, and is Involved in PEDV Growth Shi, Da; Shi, Hongyan; Sun, Dongbo; Chen, Jianfei; Zhang, Xin; Wang, Xiaobo; Zhang, Jialin; Ji, Zhaoyang; Liu, Jianbo; Cao, Liyan; Zhu, Xiangdong; Yuan, Jing; Dong, Hui; Wang, Xin; Chang, Tiecheng; Liu, Ye; Feng, Li 2017 2017-01-03 COMM-USE N PMC5206633 28045037.0 10.1038/srep39700 6qoksn00 0.452895 Volmer_2010, Shi_S_2000, Greene_2012, Blank_2017 Yan_J_2020, Zhang_2015
462 Cortese_2017 Ultrastructural Characterization of Zika Virus Replication Factories Cortese, Mirko; Goellner, Sarah; Acosta, Eliana Gisela; Neufeldt, Christopher John; Oleksiuk, Olga; Lampe, Marko; Haselmann, Uta; Funaya, Charlotta; Schieber, Nicole; Ronchi, Paolo; Schorb, Martin; Pruunsild, Priit; Schwab, Yannick; Chatel-Chaix, Laurent; Ruggieri, Alessia; Bartenschlager, Ralf 2017 2017-02-28 None N PMC5340982 28249158.0 10.1016/j.celrep.2017.02.014 7t8zczyf 0.451900 den_Boon_2010, Yasui_2016, Volmer_2010, Tallmadge_2008, Lu_P_2016 Zhang_2015
463 Wang_2016 Characterization of a protein tyrosine phosphatase as a host factor promoting baculovirus replication in silkworm, Bombyx mori Wang, Fei; Xue, Renju; Li, Xianyang; Hu, Cuimei; Xia, Qingyou 2016 2016-04-30 PMC N PMC7124732 26684065.0 10.1016/j.dci.2015.12.002 5xftvm8x 0.451614 Berkhout_2006, Trobaugh_2017, Kumar_2016, Rice_1992, Volmer_2010 van_der_Linden_2014, Deng_2019, Wu_H_2004
464 Edgil_2006 End-to-end communication in the modulation of translation by mammalian RNA viruses Edgil, Dianna; Harris, Eva 2006 2006-07-31 PMC N 16307817.0 10.1016/j.virusres.2005.10.012 nwm6hmvv 0.449388 Rice_1992, Trobaugh_2017, Stork_2011, Yasuda-Inoue_2013, Ivanova_2015
465 Narayanan_2003 Characterization of N protein self-association in coronavirus ribonucleoprotein complexes Narayanan, Krishna; Kim, Kyongmin Hwang; Makino, Shinji 2003 2003-12-31 PMC N PMC7125804 14659560.0 10.1016/j.virusres.2003.08.021 67uqildl 0.449004 Stork_2011, Pong_2011, den_Boon_2010, Meyerson_2017 Zhang_2015, Masters_1992
466 Perez-Pepe_2012 BUHO: A MATLAB Script for the Study of Stress Granules and Processing Bodies by High-Throughput Image Analysis Perez-Pepe, Marcelo; Slomiansky, Victoria; Loschi, Mariela; Luchelli, Luciana; Neme, Maximiliano; Thomas, María Gabriela; Boccaccio, Graciela Lidia 2012 2012-12-20 COMM-USE N PMC3527446 23284702.0 10.1371/journal.pone.0051495 rdpsxb4n 0.448997 Volmer_2010, Stoecklin_2012, Dubois_2016, Emmott_2009, Moon_2012 Thomas_2011, Stoecklin_2012
467 Abdoli_2018 Autophagy: The multi‐purpose bridge in viral infections and host cells Abdoli, Asghar; Alirezaei, Mehrdad; Mehrbod, Parvaneh; Forouzanfar, Faezeh 2018 2018-04-30 PMC N PMC7169200 29709097.0 10.1002/rmv.1973 vr6tqiqu 0.447817 Potgieter_1986, Lu_P_2016, Mao_J_2019, Walker_2010
468 Gerits_2012 Agnoprotein of mammalian polyomaviruses Gerits, Nancy; Moens, Ugo 2012 2012-10-25 None N PMC7111918 22726243.0 10.1016/j.virol.2012.05.024 jqq7fh5j 0.447817 Rice_1992, den_Boon_2010, Yasuda-Inoue_2013, Stork_2011, Ryu_W_2017 Nowak_1984
469 Peng_2008 Phosphorylation of the arginine/serine dipeptide‐rich motif of the severe acute respiratory syndrome coronavirus nucleocapsid protein modulates its multimerization, translation inhibitory activity and cellular localization Peng, Tsui‐Yi; Lee, Kuan‐Rong; Tarn, Woan‐Yuh 2008 2008-07-09 PMC N PMC7164085 18631359.0 10.1111/j.1742-4658.2008.06564.x raqropjb 0.447792 Volmer_2010, Kang_2009, Ban_J_2018, Meyerson_2017
470 Godet_2012 Comparative nucleic acid chaperone properties of the nucleocapsid protein NCp7 and Tat protein of HIV-1 Godet, Julien; Boudier, Christian; Humbert, Nicolas; Ivanyi-Nagy, Roland; Darlix, Jean-Luc; Mély, Yves 2012 2012-11-30 PMC N PMC7114403 22743066.0 10.1016/j.virusres.2012.06.021 z22t57ju 0.447144 Stork_2011, Yasuda-Inoue_2013, Pong_2011, Meyerson_2017 Xia_H_2015, Gopinath_2015, Zhang_2015
471 Welsch_2007 More than one door – Budding of enveloped viruses through cellular membranes Welsch, Sonja; Müller, Barbara; Kräusslich, Hans-Georg 2007 2007-05-22 PMC N PMC7126970 17434167.0 10.1016/j.febslet.2007.03.060 24ktozs7 0.447003 Weissenhorn_2013, den_Boon_2010, Hobman_1993, Lenard_2008 Más_V_2013, Villanueva_2005, Modis_2009, Wulan_2015
472 Rakitina_2011 Two RNA-binding sites in plant fibrillarin provide interactions with various RNA substrates Rakitina, D. V.; Taliansky, Michael; Brown, J. W. S.; Kalinina, N. O. 2011 2011-07-23 NONCOMM N PMC3203579 21785141.0 10.1093/nar/gkr594 ankun2ew 0.446558 Yasuda-Inoue_2013, Blank_2017, Stork_2011, Ivanova_2015 Xia_H_2015
473 Schmid_2007 Innate and Adaptive Immunity through Autophagy Schmid, Dorothee; Münz, Christian 2007 2007-07-27 PMC N PMC7118777 17663981.0 10.1016/j.immuni.2007.07.004 w4nxrafr 0.446351 Viswanathan_2010, Lester_2014, Shoji-Kawata_2009, Jang_2019 Lee_H_2008, Shoji-Kawata_2009, Lin_L_2010
474 Muller_2017 Nuclease escape elements protect messenger RNA against cleavage by multiple viral endonucleases Mandy Muller; Britt A. Glaunsinger 2017 2017-06-26 BioRxiv N 10.1101/155457 jhwjh12k 0.446236 Trobaugh_2017, Herbert_2016, Yasuda-Inoue_2013, Rice_1992, Abernathy_2015 Muller_2017, Mendez_2018
475 Lawton_2000 Mechanism of genome transcription in segmented dsRNA viruses Lawton, Jeffrey A; Estes, Mary K; Venkataram Prasad, B.V 2000 2000-12-31 PMC N 11050943.0 10.1016/s0065-3527(00)55004-0 bbpmlo3c 0.446181 den_Boon_2010, Rice_1992, Trobaugh_2017, Stork_2011 Wulan_2015, Tzeng_2006
476 Yan_J_2020 Involvement of VCP/UFD1/Nucleolin in the viral entry of Enterovirus A species Yan, Jingjing; Wang, Meng; Wang, Min; Dun, Ying; Zhu, Liuyao; Yi, Zhigang; Zhang, Shuye 2020 2020-07-02 PMC N 10.1016/j.virusres.2020.197974 lqu8wm88 0.445725 Ban_J_2018, Yasuda-Inoue_2013, Meyerson_2017, Greene_2012, Kumar_2016 Phongphaew_2017, Sun_D_2016, Wilde_2019
477 Lippé_2012 Deciphering Novel Host–Herpesvirus Interactions by Virion Proteomics Lippé, Roger 2012 2012-05-28 NONCOMM N PMC3390586 22783234.0 10.3389/fmicb.2012.00181 iuo2cw23 0.445237 UNKNOWN_2004, Johnson_2018, Cullen_2009, Conzelmann_1996 Zhang_2015, Watanabe_2019, Sun_D_2016, Royle_2015
478 Richard_2012 Caspase cleavage of viral proteins, another way for viruses to make the best of apoptosis Richard, A; Tulasne, D 2012 2012-03-08 NONCOMM N PMC3317351 22402601.0 10.1038/cddis.2012.18 3hxau5vt 0.444993 Berkhout_2006, Klein_2011, Shi_J_2012, Cheng_2014, Rivas_2016 Galluzzi_2008, Chemudupati_2019, Bulanova_2017
479 Kaewborisuth_2019 Porcine Epidemic Diarrhea Virus (PEDV) ORF3 Interactome Reveals Inhibition of Virus Replication by Cellular VPS36 Protein Kaewborisuth, Challika; Yingchutrakul, Yodying; Roytrakul, Sittiruk; Jongkaewwattana, Anan 2019 2019-04-24 COMM-USE N PMC6521123 31022991.0 10.3390/v11040382 uabg37n0 0.444001 Volmer_2010, Trobaugh_2017, Kang_2009, Ban_J_2018, Rice_1992 zhao_2018
480 Cooray_2007 The Role of Phosphoinositide 3-Kinase-Akt Signaling in Virus Infection Cooray, Samantha 2007 2007-01-01 PMC N PMC7120950 10.1007/978-1-59745-199-4_3 9fm2gpxx 0.443383 Mao_J_2019, Lester_2014, Berkhout_2006, Potgieter_1986, Kim_S_2018 Galluzzi_2008, Kumar_2018, Sun_D_2016
481 zhao_2018 Host protein CD63 enhances viral RNA replication by interacting with human astrovirus nonstructural protein nsP1a/4 wei zhao; Nian liu; Xiao Li Tao; Chun hong Zheng; Xiang yu Li; Man Yu; Yong gang Li 2018 2018-05-27 BioRxiv N 10.1101/331835 8r1zb4oc 0.442973 Volmer_2010, Li_C_2013, Kang_2009, Ban_J_2018, Li_C_2014 Zhang_2015
482 Robertson_2003 Fgl2: link between hepatitis B and SARS? Robertson, Morag 2003 2003-09-01 PMC N PMC7129602 12946632.0 10.1016/s1359-6446(03)02836-8 17026yv8 0.442562 Potgieter_1986, Tallmadge_2008, Jerome_2005, Trobaugh_2017 Zhou_2012, Hu_J_2014
483 Nieto-Torres_2015 Relevance of Viroporin Ion Channel Activity on Viral Replication and Pathogenesis Nieto-Torres, Jose L.; Verdiá-Báguena, Carmina; Castaño-Rodriguez, Carlos; Aguilella, Vicente M.; Enjuanes, Luis 2015 2015-07-03 COMM-USE N PMC4517115 26151305.0 10.3390/v7072786 v5o49ees 0.441804 Shi_J_2012, Taschuk_2020, Klein_2011, Cheng_2014, Kim_S_2018 Sze_C_2015, Farag_2020, Fulcher_2011
484 Azkanaz_2019 Protein quality control in the nucleolus safeguards recovery of epigenetic regulators after heat shock Azkanaz, Maria; Rodríguez López, Aida; de Boer, Bauke; Huiting, Wouter; Angrand, Pierre-Olivier; Vellenga, Edo; Kampinga, Harm H; Bergink, Steven; Martens, Joost HA; Schuringa, Jan Jacob; van den Boom, Vincent 2019 2019-06-14 COMM-USE N PMC6570483 31199242.0 10.7554/elife.45205 ekhj8ae8 0.441548 Blank_2017, Dubois_2016, Connelly_1996, Abernathy_2015 Wang_2009
485 Lou_Z_2014 Current progress in antiviral strategies Lou, Zhiyong; Sun, Yuna; Rao, Zihe 2014 2014-02-28 PMC N PMC7112804 24439476.0 10.1016/j.tips.2013.11.006 2vy28i4m 0.440954 Potgieter_1986, Mao_J_2019, Tallmadge_2008, Berkhout_2006, Montefiori_2007 Paintsil_2009, Müller_2009, Kaufmann_2017, Magden_2004
486 Banerjee_2020 Bat influenza viruses: Making a double agent of MHC class II Banerjee, Arinjay; Mossman, Karen L.; Miller, Matthew S. 2020 2020-04-20 PMC N 10.1016/j.tim.2020.04.006 gmofny2g 0.439495 Lester_2014, Bermejo-Jambrina_2018, Berkhout_2006, Shi_J_2012
487 Noack_2014 Chapter 8 Non-Lipidated LC3 is Essential for Mouse Hepatitis Virus Infection Noack, Julia; Bernasconi, Riccardo; Molinari, Maurizio 2014 2014-12-31 PMC N PMC7150285 10.1016/b978-0-12-405877-4.00008-1 mhkxw1uh 0.439243 UNKNOWN_1995, Greene_2012, Volmer_2010, Hobman_1993, Weissenhorn_2013 Doyle_2018, Neufeldt_2016
488 Hibbs_1995 1 Viruses, virulence and pathogenicity Hibbs, Jonathan; Young, Neal S. 1995 1995-03-31 PMC N PMC7134682 7663043.0 10.1016/s0950-3536(05)80230-6 1b3g0ls3 0.438919 Mao_J_2019, Potgieter_1986, Lester_2014, Berkhout_2006, Kindler_2014 Rott_1987, Giorda_2013, Galluzzi_2008, Tripp_2013
489 FENNER_1987 CHAPTER 6 Pathogenesis: Virus-Induced Changes in Cells FENNER, FRANK; BACHMANN, PETER A.; GIBBS, E. PAUL J.; MURPHY, FREDERICK A.; STUDDERT, MICHAEL J.; WHITE, DAVID O. 1987 1987-12-31 PMC N 10.1016/b978-0-12-253055-5.50010-4 uvr4tktn 0.438544 Denison_2008, Berkhout_2006, Hull_2014, Trobaugh_2017, Volmer_2010
490 Yang_2016 Chapter 14 Metabolomics and Lipidomics Yet More Ways Your Health Is Influenced by Fat Yang, Priscilla L. 2016 2016-12-31 PMC N PMC7149616 10.1016/b978-0-12-800964-2.00014-8 0mdv60t4 0.438496 Lester_2014, Shi_J_2012, Berkhout_2006, Kindler_2014, Cheng_2014 Keshavarz_2020, Xing_2014, Lercher_2019, Martín-Acebes_2019
491 Kozak_1986 Regulation of Protein Synthesis in Virus-Infected Animal Cells Kozak, Marilyn 1986 1986-12-31 PMC N PMC7131717 3019107.0 10.1016/s0065-3527(08)60265-1 oetrdm8g 0.438297 Trobaugh_2017, Moon_2012, Haasnoot_2010, Abernathy_2015 de_Breyne_2018, Roberts_2009
492 Colbère-Garapin_2005 Silencing viruses by RNA interference Colbère-Garapin, Florence; Blondel, Bruno; Saulnier, Aure; Pelletier, Isabelle; Labadie, Karine 2005 2005-04-30 PMC N PMC7110879 15820151.0 10.1016/j.micinf.2005.02.003 4uw4frer 0.438164 Trobaugh_2017, Rice_1992, Berkhout_2006, Herbert_2016, Haasnoot_2010 Haddad_2011, Rothe_2010, Bhullar_2014, Masante_2015
493 Khaperskyy_2016 Selective Degradation of Host RNA Polymerase II Transcripts by Influenza A Virus PA-X Host Shutoff Protein Khaperskyy, Denys A.; Schmaling, Summer; Larkins-Ford, Jonah; McCormick, Craig; Gaglia, Marta M. 2016 2016-02-05 COMM-USE N PMC4744033 26849127.0 10.1371/journal.ppat.1005427 k87d4amo 0.437148 Yasuda-Inoue_2013, Stork_2011, Meyerson_2017, Rice_1992, Herbert_2016 Gaucherand_2019, Gaucherand_2018, Bhullar_2014
494 Paintsil_2019 Antiviral Agents☆ Paintsil, E.; Cheng, Y.-C. 2019 2019-12-31 PMC N PMC7150273 10.1016/b978-0-12-801238-3.02387-4 aqlxb6ab 0.436942 Potgieter_1986, Berkhout_2006, Mao_J_2019, Trobaugh_2017 Paintsil_2009, Vardanyan_2016, Martínez_2008, Zhou_2012
495 Lark_2018 Interactions of Alphavirus nsP3 Protein with Host Proteins Lark, Tyler; Keck, Forrest; Narayanan, Aarthi 2018 2018-01-09 COMM-USE N PMC5767282 29375517.0 10.3389/fmicb.2017.02652 8pee66k6 0.436847 Ryu_W_2017, Rice_1992, den_Boon_2010, Volmer_2010, Taschuk_2020 Zhang_2015, Pastorino_2008
496 To_J_2018 Beyond Channel Activity: Protein-Protein Interactions Involving Viroporins To, Janet; Torres, Jaume 2018 2018-06-14 PMC N PMC7122450 29900504.0 10.1007/978-981-10-8456-0_15 qydevzn1 0.435997 Berkhout_2006, Taschuk_2020, Haasnoot_2010, Trobaugh_2017, Tessier_2019 Fulcher_2011, Nieva_2012, Zhang_2015
497 Chemudupati_2019 From APOBEC to ZAP: Diverse mechanisms used by cellular restriction factors to inhibit virus infections Chemudupati, Mahesh; Kenney, Adam D.; Bonifati, Serena; Zani, Ashley; McMichael, Temet M.; Wu, Li; Yount, Jacob S. 2019 2019-03-31 None N PMC6334645 30290238.0 10.1016/j.bbamcr.2018.09.012 vplm0lpq 0.435600 Rice_1992, den_Boon_2010, Meyerson_2017, Trobaugh_2017, Yasuda-Inoue_2013 Neufeldt_2016
498 Haasnoot_2010 RNAi and Cellular miRNAs in Infections by Mammalian Viruses Haasnoot, Joost; Berkhout, Ben 2010 2010-11-19 PMC N PMC7120436 21431677.0 10.1007/978-1-61779-037-9_2 tg1310br 0.435473 Trobaugh_2017, Berkhout_2006, Herbert_2016, Abernathy_2015 Trobaugh_2017, Moens_2009, Berkhout_2006, Carnero_2011
499 Gushchin_2013 Beet yellows virus replicase and replicative compartments: parallels with other RNA viruses Gushchin, Vladimir A.; Solovyev, Andrey G.; Erokhina, Tatyana N.; Morozov, Sergey Y.; Agranovsky, Alexey A. 2013 2013-03-06 COMM-USE N PMC3589766 23508802.0 10.3389/fmicb.2013.00038 kz7ets8c 0.435243 den_Boon_2010, Yasuda-Inoue_2013, Volmer_2010, Stork_2011, Rice_1992 Wulan_2015
500 Luque_2009 Infectious Bursal Disease Virus: Ribonucleoprotein Complexes of a Double-Stranded RNA Virus Luque, Daniel; Saugar, Irene; Rejas, María Teresa; Carrascosa, José L.; Rodríguez, José F.; Castón, José R. 2009 2009-02-27 PMC N 19063900.0 10.1016/j.jmb.2008.11.029 ax8ybkcr 0.435177 Stork_2011, Rice_1992, Pong_2011, den_Boon_2010, Yasuda-Inoue_2013
501 Khan_2015 Mitochondrial dynamics and viral infections: A close nexus Khan, Mohsin; Syed, Gulam Hussain; Kim, Seong-Jun; Siddiqui, Aleem 2015 2015-10-31 PMC N PMC4500740 25595529.0 10.1016/j.bbamcr.2014.12.040 ao80xk11 0.434561 Kim_S_2018, Shi_J_2012, Jang_2019, Lester_2014, Mao_J_2019 Lin_L_2010, Lai_J_2018, Galluzzi_2008, Kim_S_2018
502 Poltronieri_2015 RNA Viruses: RNA Roles in Pathogenesis, Coreplication and Viral Load Poltronieri, Palmiro; Sun, Binlian; Mallardo, Massimo 2015 2015-10-23 NONCOMM N PMC4763971 27047253.0 10.2174/1389202916666150707160613 259cspey 0.432126 Trobaugh_2017, Herbert_2016, Yasuda-Inoue_2013, Rice_1992 Trobaugh_2017, Diaz_2012, Chen_2016, Wulan_2015
503 Randow_2012 Autophagy in the regulation of pathogen replication and adaptive immunity Randow, Felix; Münz, Christian 2012 2012-10-31 None N PMC3461100 22796170.0 10.1016/j.it.2012.06.003 7854khb9 0.432126 Viswanathan_2010, Shoji-Kawata_2009, Choi_2020, Lester_2014 Lee_H_2008, Schmid_2007, Subauste_2009, Shoji-Kawata_2009
504 Miller_2005 Pleiotropic mechanisms of virus survival and persistence Miller, Craig S. 2005 2005-08-31 PMC N PMC7118778 16037790.0 10.1016/j.tripleo.2005.03.017 bu5pzbnv 0.431434 Shi_J_2012, Mao_J_2019, Lester_2014, Berkhout_2006, Potgieter_1986 Hibbs_1995, Rott_1987, Gaska_2015, Giorda_2013
505 Sekine_2017 Spatiotemporal dynamics of HSV genome nuclear entry and compaction state transitions using bioorthogonal chemistry and super-resolution microscopy Sekine, Eiki; Schmidt, Nora; Gaboriau, David; O’Hare, Peter 2017 2017-11-09 COMM-USE N PMC5697887 29121649.0 10.1371/journal.ppat.1006721 kq25hk8v 0.430925 den_Boon_2010, Volmer_2010, Dubois_2016, Rice_1992, Payne_2017 Wulan_2015, Arizala_2018, Yuan_2016
506 Wharton_1993 Virus — cell interactions in the nervous system and the role of the immune response Wharton, Stephen B.; Nash, Anthony A. 1993 1993-10-31 PMC N PMC7134718 8260827.0 10.1016/0959-4388(93)90151-n bfm7ecwr 0.430830 Lester_2014, Shi_J_2012, Kim_S_2018, Berkhout_2006 Liu_M_2001, Lane_2006, Griffin_2003
507 O'Donnell_2011 Foot-and-mouth disease virus utilizes an autophagic pathway during viral replication O'Donnell, Vivian; Pacheco, Juan M.; LaRocco, Michael; Burrage, Tom; Jackson, William; Rodriguez, Luis L.; Borca, Manuel V.; Baxt, Barry 2011 2011-02-05 PMC N PMC7126820 21112602.0 10.1016/j.virol.2010.10.042 fhdvcvi0 0.430632 Meyerson_2017, den_Boon_2010, Volmer_2010, Yasuda-Inoue_2013 Ding_2017
508 Gancarz_2011 Systematic Identification of Novel, Essential Host Genes Affecting Bromovirus RNA Replication Gancarz, Brandi L.; Hao, Linhui; He, Qiuling; Newton, Michael A.; Ahlquist, Paul 2011 2011-08-22 COMM-USE N PMC3161824 21915247.0 10.1371/journal.pone.0023988 39rbo0f9 0.430316 Trobaugh_2017, Yasuda-Inoue_2013, Rice_1992, Berkhout_2006, Haasnoot_2010
509 Ke_P_2018 The Multifaceted Roles of Autophagy in Flavivirus-Host Interactions Ke, Po-Yuan 2018 2018-12-07 COMM-USE N PMC6321027 30544615.0 10.3390/ijms19123940 30u8ya84 0.427846 Lu_P_2016, Potgieter_1986, Mao_J_2019, Shi_J_2012 Espert_2007, Lin_L_2010, Ding_2017
510 Agol_2010 Viral security proteins: counteracting host defences Agol, Vadim I.; Gmyl, Anatoly P. 2010 2010-11-09 PMC N PMC7096814 21060318.0 10.1038/nrmicro2452 3kg4oe4g 0.427507 Berkhout_2006, Taschuk_2020, Haasnoot_2010, Trobaugh_2017, Rice_1992 Watanabe_2019, van_Tol_2017, Galluzzi_2008
511 Ren_X_2012 Proteomic analysis of purified Newcastle disease virus particles Ren, Xiangpeng; Xue, Chunyi; Kong, Qingming; Zhang, Chengwen; Bi, Yingzuo; Cao, Yongchang 2012 2012-05-09 COMM-USE N PMC3413529 22571704.0 10.1186/1477-5956-10-32 trl5qsyd 0.427269 Rice_1992, Volmer_2010, den_Boon_2010, Pong_2011, Tallmadge_2008 Zhang_2015, Kong_2010, Zhang_2010, Kumar_2015
512 Cullen_2009 Viral RNAs: Lessons from the Enemy Cullen, Bryan R. 2009 2009-02-20 PMC N PMC7127818 19239880.0 10.1016/j.cell.2009.01.048 0e9lonq4 0.426872 Trobaugh_2017, Rice_1992, Denison_2008, Wang_2018 Jeang_2006, Tzeng_2006, Chemudupati_2019
513 Neumann_2015 How do viruses control mitochondria-mediated apoptosis? Neumann, Simon; El Maadidi, Souhayla; Faletti, Laura; Haun, Florian; Labib, Shirin; Schejtman, Andrea; Maurer, Ulrich; Borner, Christoph 2015 2015-11-02 PMC N PMC7114537 25736565.0 10.1016/j.virusres.2015.02.026 xevie6tm 0.425762 Denison_2008, Berkhout_2006, Mao_J_2019, Bagga_2014, Lester_2014 Galluzzi_2008, Bagga_2014, Mori_2011, Chemudupati_2019
514 Xia_H_2015 Human Enterovirus Nonstructural Protein 2C(ATPase) Functions as Both an RNA Helicase and ATP-Independent RNA Chaperone Xia, Hongjie; Wang, Peipei; Wang, Guang-Chuan; Yang, Jie; Sun, Xianlin; Wu, Wenzhe; Qiu, Yang; Shu, Ting; Zhao, Xiaolu; Yin, Lei; Qin, Cheng-Feng; Hu, Yuanyang; Zhou, Xi 2015 2015-07-28 COMM-USE N PMC4517893 26218680.0 10.1371/journal.ppat.1005067 wo462anq 0.424560 Yasuda-Inoue_2013, Stork_2011, den_Boon_2010, Pong_2011, Meyerson_2017
515 Lundin_2014 Targeting Membrane-Bound Viral RNA Synthesis Reveals Potent Inhibition of Diverse Coronaviruses Including the Middle East Respiratory Syndrome Virus Lundin, Anna; Dijkman, Ronald; Bergström, Tomas; Kann, Nina; Adamiak, Beata; Hannoun, Charles; Kindler, Eveline; Jónsdóttir, Hulda R.; Muth, Doreen; Kint, Joeri; Forlenza, Maria; Müller, Marcel A.; Drosten, Christian; Thiel, Volker; Trybala, Edward 2014 2014-05-29 COMM-USE N PMC4038610 24874215.0 10.1371/journal.ppat.1004166 o4nk6mzz 0.424254 Rice_1992, Meyerson_2017, den_Boon_2010, Ryu_W_2017, Tallmadge_2008 Neufeldt_2016, Xiong_2020
516 Schneider_2019 Single organelle analysis to characterize mitochondrial function and crosstalk during viral infection Schneider, Annika; Kurz, Sandra; Manske, Katrin; Janas, Marianne; Heikenwälder, Mathias; Misgeld, Thomas; Aichler, Michaela; Weissmann, Sebastian Felix; Zischka, Hans; Knolle, Percy; Wohlleber, Dirk 2019 2019-06-11 COMM-USE N PMC6560178 31186476.0 10.1038/s41598-019-44922-9 3bv3aak6 0.423882 Trobaugh_2017, Berkhout_2006, Rice_1992, Mao_J_2019, Kim_S_2018 Khan_2015, Lin_L_2010, Lai_J_2018, Fulcher_2011
517 Han_K_2019 The ubiquitin-proteasome system is necessary for the replication of duck Tembusu virus Han, Kaikai; Zhao, Dongmin; Liu, Yuzhuo; Liu, Qingtao; Huang, Xinmei; Yang, Jing; Zhang, Lijiao; Li, Yin 2019 2019-07-31 PMC N PMC7126904 31054366.0 10.1016/j.micpath.2019.04.044 xgsn30en 0.423560 Trobaugh_2017, Volmer_2010, Berkhout_2006, Meyerson_2017, Ban_J_2018 Sun_D_2016, Si_X_2008, Yan_J_2020
518 Bongaerts_2008 Microbial proteinase inside human cells as anti-mitochondrial activity: A new virulence factor in infectious diseases? Bongaerts, Ger P.A.; van den Heuvel, Lambert P. 2008 2008-12-31 PMC N PMC7131153 17825998.0 10.1016/j.mehy.2007.06.035 u04rej8s 0.423216 Tessier_2019, Moon_2012, Trobaugh_2017, Greene_2012, Stoecklin_2012 Zhang_2015, Sun_D_2016, Galluzzi_2008
519 Thaa_2010 Viruses as vesicular carriers of the viral genome: A functional module perspective Thaa, Bastian; Hofmann, Klaus Peter; Veit, Michael 2010 2010-04-30 PMC N PMC7114299 20100522.0 10.1016/j.bbamcr.2010.01.011 y2zdu79n 0.422195 Weissenhorn_2013, Hobman_1993, UNKNOWN_1995, Tessier_2019, Hurley_2014 UNKNOWN_1993, Más_V_2013, Fulcher_2011, Wulan_2015
520 Gao_W_2010 Identification of NCAM that interacts with the PHE-CoV spike protein Gao, Wei; He, Wenqi; Zhao, Kui; Lu, Huijun; Ren, Wenzhi; Du, Chongtao; Chen, Keyan; Lan, Yungang; Song, Deguang; Gao, Feng 2010 2010-09-24 COMM-USE N PMC2955716 20863409.0 10.1186/1743-422x-7-254 ss1upwwo 0.422183 Trobaugh_2017, Rice_1992, Volmer_2010, Greene_2012, Meyerson_2017 Zhang_2015, Du_L_2007, Wang_2009, van_der_Linden_2014
521 Chaudhari_2014 Effector biology during biotrophic invasion of plant cells Chaudhari, Prateek; Ahmed, Bulbul; Joly, David L; Germain, Hugo 2014 2014-10-01 NONCOMM N PMC4189876 25513771.0 10.4161/viru.29652 7g8st5cz 0.421877 Lester_2014, Viswanathan_2010, Shi_J_2012, Berkhout_2006 Dang_2015, Thibivilliers_2009, Giorda_2013
522 Payne_2017 Chapter 10 Introduction to RNA Viruses Payne, Susan 2017 2017-12-31 PMC N 10.1016/b978-0-12-803109-4.00010-6 jxhtdhgg 0.421638 Rice_1992, Stork_2011, den_Boon_2010, Banerjee_2001
523 Maier_2014 Spherules and IBV Maier, Helena J; Hawes, Philippa C; Keep, Sarah M; Britton, Paul 2014 2014-09-01 COMM-USE N PMC4156489 25482229.0 10.4161/bioe.29323 krufo80s 0.421602 Rice_1992, Lu_P_2016, Tallmadge_2008, den_Boon_2010, Yasui_2016 Valle-Casuso_2020, Ren_X_2008
524 Sobhy_2016 A Review of Functional Motifs Utilized by Viruses Sobhy, Haitham 2016 2016-01-21 COMM-USE N PMC5217368 28248213.0 10.3390/proteomes4010003 yz4grpic 0.421602 Yasuda-Inoue_2013, Trobaugh_2017, Taschuk_2020, Berkhout_2006, Ivarsson_2012 Zhang_2015, Sun_D_2016, Vigerust_2011, Ao_D_2015
525 Tom_C_2012 Fat chance! Getting a grip on a slippery modification Tom, Christopher M.B.; Martin, Brent R. 2012 2012-12-18 PMC N PMC3693556 23215442.0 10.1021/cb300607e zyr5uc98 0.421197 Hurley_2014, Cosson_2013, Ivarsson_2012, Salaun_2010 Sobocińska_2018, Salaun_2010, Benarroch_2019
526 Kodiha_2011 Computer-based fluorescence quantification: a novel approach to study nucleolar biology Kodiha, Mohamed; Bański, Piotr; Stochaj, Ursula 2011 2011-06-03 COMM-USE N PMC3126779 21639891.0 10.1186/1471-2121-12-25 lnabmwgp 0.421107 Dubois_2016, Emmott_2009, Volmer_2010, Tessier_2019, Moon_2012 Jarboui_2012, Sirri_2007, Rossignol_2015
527 Yoshida_2015 IFN-β-inducing, unusual viral RNA species produced by paramyxovirus infection accumulated into distinct cytoplasmic structures in an RNA-type-dependent manner Yoshida, Asuka; Kawabata, Ryoko; Honda, Tomoyuki; Tomonaga, Keizo; Sakaguchi, Takemasa; Irie, Takashi 2015 2015-08-04 COMM-USE N PMC4523817 26300870.0 10.3389/fmicb.2015.00804 cxi3cr15 0.420694 Rice_1992, Volmer_2010, den_Boon_2010, Trobaugh_2017, Meyerson_2017 Uzri_2013, Chen_2019
528 Li_S_2012 Proteomics Defines Protein Interaction Network of Signaling Pathways Li, Shitao 2012 2012-12-27 PMC N PMC7123116 10.1007/978-94-007-5811-7_2 elb93kp6 0.420325 Ivarsson_2012, Bansal_2020, Berkhout_2006, Choudhury_2017 Zhang_2015, Pridgeon_2008, Gaggar_2007
529 Rattan_1995 Chapter 10 Protein synthesis and regulation in eukaryotes Rattan, Suresh I.S. 1995 1995-12-31 PMC N 10.1016/s1569-2582(06)80012-7 gl6a8f92 0.419643 Dubois_2016, Blank_2017, Moon_2012, Brown_2008, Ivanova_2015 Sasvari_2011, UNKNOWN_1984, Byszewska_2015
530 Enard_2015 Viruses are a dominant driver of protein adaptation in mammals David Enard; Le Cai; Carina Gwenapp; Dmitri A Petrov 2015 2015-10-18 BioRxiv N 10.1101/029397 q5iylws9 0.419331 Berkhout_2006, Taschuk_2020, Haasnoot_2010, Volmer_2010, Trobaugh_2017 Enard_2016, Bahir_2009, Schein_2018
531 Simon_2009 RNA conformational changes in the life cycles of RNA viruses, viroids, and virus-associated RNAs Simon, Anne E.; Gehrke, Lee 2009 2009-10-31 None N PMC2784224 19501200.0 10.1016/j.bbagrm.2009.05.005 q4oavl7r 0.419004 Trobaugh_2017, Stork_2011, Rice_1992, Herbert_2016, den_Boon_2010 Wulan_2015
532 Maillard_2019 Slicing and dicing viruses: antiviral RNA interference in mammals Maillard, Pierre V; van der Veen, Annemarthe G; Poirier, Enzo Z; Reis e Sousa, Caetano 2019 2019-03-15 COMM-USE N PMC6463209 30872283.0 10.15252/embj.2018100941 aas31i79 0.418511 Berkhout_2006, Lester_2014, Shi_J_2012, Kindler_2014, Rajsbaum_2013 Case_2017, Berkhout_2006, Schuster_2019
533 White_2015 The sweet side of RNA regulation: glyceraldehyde-3-phosphate dehydrogenase as a noncanonical RNA-binding protein White, Michael R.; Garcin, Elsa D. 2015 2015-11-12 PMC N PMC5120886 26564736.0 10.1002/wrna.1315 tabob5qs 0.418511 Yasuda-Inoue_2013, Trobaugh_2017, Blank_2017, Ivanova_2015 Järvelin_2016, Xia_H_2015
534 Baillet_2019 Autophagy Promotes Infectious Particle Production of Mopeia and Lassa Viruses Baillet, Nicolas; Krieger, Sophie; Journeaux, Alexandra; Caro, Valérie; Tangy, Frédéric; Vidalain, Pierre-Olivier; Baize, Sylvain 2019 2019-03-23 COMM-USE N PMC6466445 30909570.0 10.3390/v11030293 afnto2tz 0.417933 Lu_P_2016, Tallmadge_2008, Yasui_2016, Potgieter_1986, Ryu_W_2017 Ding_2017, Case_2017
535 Sztuba-Solińska_2011 Subgenomic messenger RNAs: Mastering regulation of (+)-strand RNA virus life cycle Sztuba-Solińska, Joanna; Stollar, Victor; Bujarski, Jozef J. 2011 2011-04-10 PMC N PMC7111999 21377709.0 10.1016/j.virol.2011.02.007 g410mavp 0.417409 Stork_2011, Yasuda-Inoue_2013, Rice_1992, Trobaugh_2017, den_Boon_2010 Bhullar_2014, Adams_2003
536 Swaine_2015 CDC42 Use in Viral Cell Entry Processes by RNA Viruses Swaine, Thomas; Dittmar, Matthias T. 2015 2015-12-10 COMM-USE N PMC4690878 26690467.0 10.3390/v7122955 x022ou4y 0.417316 Shi_J_2012, Berkhout_2006, Postigo_2009, Cheng_2014, Klein_2011 Fulcher_2011, Bagga_2014
537 Edgcomb_2012 DDX1 Is an RNA-Dependent ATPase Involved in HIV-1 Rev Function and Virus Replication Edgcomb, Stephen P.; Carmel, Andrew B.; Naji, Souad; Ambrus-Aikelin, Geza; Reyes, Jason R.; Saphire, Andrew C.S.; Gerace, Larry; Williamson, James R. 2012 2012-01-06 None N PMC3249508 22051512.0 10.1016/j.jmb.2011.10.032 vq16j5gw 0.416525 Yasuda-Inoue_2013, Stork_2011, Pong_2011, Meyerson_2017, Liu_H_2009 Yasuda-Inoue_2013, Xia_H_2015
538 Hopkins_2015 The role of immunophilins in viral infection Hopkins, Sam; Gallay, Philippe A. 2015 2015-10-31 None N PMC4491039 25445708.0 10.1016/j.bbagen.2014.11.011 8in6yuwf 0.416117 den_Boon_2010, Trobaugh_2017, Potgieter_1986, Rice_1992, Berkhout_2006 A_Abdullah_2018, Sun_D_2016
539 Canetta_2008 A Plant Virus Movement Protein Forms Ringlike Complexes with the Major Nucleolar Protein, Fibrillarin, In Vitro Canetta, Elisabetta; Kim, Sang Hyon; Kalinina, Natalia O.; Shaw, Jane; Adya, Ashok K.; Gillespie, Trudi; Brown, John W.S.; Taliansky, Michael 2008 2008-02-29 PMC N PMC7126915 18199452.0 10.1016/j.jmb.2007.12.039 9tp3yiz7 0.415863 Volmer_2010, Dubois_2016, den_Boon_2010, Yasuda-Inoue_2013, Stork_2011 Bhat_2011
540 A_Abdullah_2018 Cyclophilin A as a target in the treatment of cytomegalovirus infections A Abdullah, Ashwaq; Abdullah, Rasedee; A Nazariah, Zeenathul; N Balakrishnan, Krishnan; Firdaus J Abdullah, Faez; A Bala, Jamilu; Mohd-Lila, Mohd-Azmi 2018 2018-11-18 NONCOMM N PMC6243413 30449131.0 10.1177/2040206618811413 bmok0jqa 0.415863 Berkhout_2006, Trobaugh_2017, Mao_J_2019, Shi_J_2012, Potgieter_1986 Sidhu_1996, Lee_C_2019, Valle-Casuso_2020, Hopkins_2015
541 Zuñiga_2016 Virulence factors in porcine coronaviruses and vaccine design Zuñiga, Sonia; Pascual-Iglesias, Alejandro; Sanchez, Carlos M.; Sola, Isabel; Enjuanes, Luis 2016 2016-12-02 None N PMC5159199 27397100.0 10.1016/j.virusres.2016.07.003 1qjbuofz 0.415863 Lu_P_2016, Berkhout_2006, Fauci_2006, Potgieter_1986, Rice_1992 Ploquin_2013
542 Cheng_2015 Severe acute respiratory syndrome coronavirus protein 6 mediates ubiquitin-dependent proteosomal degradation of N-Myc (and STAT) interactor Cheng, Weijia; Chen, Shiyou; Li, Ruiling; Chen, Yu; Wang, Min; Guo, Deyin 2015 2015-04-17 PMC N PMC7091177 25907116.0 10.1007/s12250-015-3581-8 8g6pcfvo 0.414507 Ban_J_2018, Meyerson_2017, Dixit_2013, Greene_2012, Kumar_2016 Thornbrough_2016, Jimenez-Guardeño_2014
543 Balinsky_2017 IRAV (FLJ11286), an Interferon-Stimulated Gene with Antiviral Activity against Dengue Virus, Interacts with MOV10 Balinsky, Corey A.; Schmeisser, Hana; Wells, Alexandra I.; Ganesan, Sundar; Jin, Tengchuan; Singh, Kavita; Zoon, Kathryn C. 2017 2017-02-14 COMM-USE N PMC5309953 27974568.0 10.1128/jvi.01606-16 795wuqz5 0.413938 Meyerson_2017, Li_C_2014, Yasuda-Inoue_2013, Ban_J_2018, Tallmadge_2008 Sidhu_1996
544 Beard_2014 A Loss of Function Analysis of Host Factors Influencing Vaccinia virus Replication by RNA Interference Beard, Philippa M.; Griffiths, Samantha J.; Gonzalez, Orland; Haga, Ismar R.; Pechenick Jowers, Tali; Reynolds, Danielle K.; Wildenhain, Jan; Tekotte, Hille; Auer, Manfred; Tyers, Mike; Ghazal, Peter; Zimmer, Ralf; Haas, Jürgen 2014 2014-06-05 COMM-USE N PMC4047015 24901222.0 10.1371/journal.pone.0098431 si8btsab 0.413755 Trobaugh_2017, Berkhout_2006, Rice_1992, den_Boon_2010, Haasnoot_2010 Masante_2015, Haddad_2011, Yan_J_2020
545 Sun_E_2013 Live cell imaging of viral entry Sun, Eileen; He, Jiang; Zhuang, Xiaowei 2013 2013-02-28 None N PMC3587724 23395264.0 10.1016/j.coviro.2013.01.005 5lny749e 0.413718 Trobaugh_2017, den_Boon_2010, Rice_1992, Mudhakir_2009 Giorda_2013, Sewald_2018, Casasnovas_2013
546 Hartenian_2019 Herpesvirus infection reduces Pol II occupancy of host promoters but spares viral promoters Ella N Hartenian; Britt A Glaunsinger 2019 2019-03-26 BioRxiv N 10.1101/585984 i51almnu 0.413413 Meyerson_2017, Yasuda-Inoue_2013, Blank_2017, Hartenian_2020 Hartenian_2020, Masante_2015, Abernathy_2015
547 Yoo_D_2010 Modulation of host cell responses and evasion strategies for porcine reproductive and respiratory syndrome virus Yoo, Dongwan; Song, Cheng; Sun, Yan; Du, Yijun; Kim, Oekyung; Liu, Hsiao-Ching 2010 2010-12-31 PMC N PMC7114477 20655963.0 10.1016/j.virusres.2010.07.019 fp3wppsg 0.413021 Lester_2014, Dixit_2013, Kindler_2014, Mao_J_2019, Viswanathan_2010 Han_M_2014
548 Fischer_2012 Chapter six Mechanism of Function of Viral Channel Proteins and Implications for Drug Development Fischer, Wolfgang B.; Wang, Yi-Ting; Schindler, Christina; Chen, Chin-Pei 2012 2012-12-31 PMC N PMC7149447 22364876.0 10.1016/b978-0-12-394305-7.00006-9 n7j0c4ne 0.412494 Trobaugh_2017, Tessier_2019, Taschuk_2020, Haasnoot_2010, Volmer_2010 To_J_2018, Sze_C_2015, Fulcher_2011, Fischer_2011
549 Timmins_2004 Structural studies on the Ebola virus matrix protein VP40 indicate that matrix proteins of enveloped RNA viruses are analogues but not homologues Timmins, Joanna; Ruigrok, Rob W.H.; Weissenhorn, Winfried 2004 2004-04-01 PMC N PMC7110346 10.1111/j.1574-6968.2004.tb09480.x fd2tsr3t 0.412494 den_Boon_2010, Timmins_2004, Weissenhorn_2013, Rice_1992 Timmins_2004, Zhang_2015
550 DaPalma_2010 A systematic approach to virus–virus interactions DaPalma, T.; Doonan, B.P.; Trager, N.M.; Kasman, L.M. 2010 2010-04-30 PMC N 20093154.0 10.1016/j.virusres.2010.01.002 zzkliu76 0.412494 Trobaugh_2017, Berkhout_2006, Rivas_2016, Haasnoot_2010, Rice_1992
551 Fontana_2010 Three-dimensional structure of Rubella virus factories Fontana, Juan; López-Iglesias, Carmen; Tzeng, Wen-Ping; Frey, Teryl K.; Fernández, José J.; Risco, Cristina 2010 2010-09-30 PMC N PMC7111912 20655079.0 10.1016/j.virol.2010.06.043 w2hic0e2 0.411794 UNKNOWN_1995, Weissenhorn_2013, Hobman_1993, Risco_2003 Risco_2003, Zhang_2015, Tenorio_2018
552 Molinas_2017 Perturbation of Wound Healing, Cytoskeletal Organization and Cellular Protein Networks during Hazara Virus Infection Molinas, Andrea; Turkina, Maria V.; Magnusson, Karl-Eric; Mirazimi, Ali; Vikström, Elena 2017 2017-11-21 COMM-USE N PMC5702460 29209610.0 10.3389/fcell.2017.00098 a31tnpin 0.411790 Greene_2012, Trobaugh_2017, Berkhout_2006, Jonker_2018, Shi_J_2012 Zhang_2015, Mak_T_2016, Benej_2019
553 Surjit_2008 The SARS-CoV nucleocapsid protein: A protein with multifarious activities Surjit, Milan; Lal, Sunil K. 2008 2008-07-31 PMC N PMC7106238 17881296.0 10.1016/j.meegid.2007.07.004 iwkgxccy 0.411050 Valle_1988, Johnson_2018, Castrignano_2015, Wiwanitkit_2014, Haasnoot_2010 Niemeyer_2018, Li_S_2016, Sun_D_2016, Shi_S_2006
554 van_Tol_2017 The TRIMendous Role of TRIMs in Virus–Host Interactions van Tol, Sarah; Hage, Adam; Giraldo, Maria Isabel; Bharaj, Preeti; Rajsbaum, Ricardo 2017 2017-08-22 COMM-USE N PMC5620554 28829373.0 10.3390/vaccines5030023 tgexahwd 0.411006 Viswanathan_2010, Greene_2012, Ban_J_2018, Meyerson_2017, Martín-Vicente_2017 Martín-Vicente_2017, Fulcher_2011, Neufeldt_2016
555 Brockway_2005 Mutagenesis of the murine hepatitis virus nsp1-coding region identifies residues important for protein processing, viral RNA synthesis, and viral replication Brockway, Sarah M.; Denison, Mark R. 2005 2005-09-30 PMC N PMC7111834 16051301.0 10.1016/j.virol.2005.06.035 tgpsu4qz 0.410517 Meyerson_2017, Stork_2011, Rice_1992, Kang_2009
556 Bösl_2019 Common Nodes of Virus–Host Interaction Revealed Through an Integrated Network Analysis Bösl, Korbinian; Ianevski, Aleksandr; Than, Thoa T.; Andersen, Petter I.; Kuivanen, Suvi; Teppor, Mona; Zusinaite, Eva; Dumpis, Uga; Vitkauskiene, Astra; Cox, Rebecca J.; Kallio-Kokko, Hannimari; Bergqvist, Anders; Tenson, Tanel; Merits, Andres; Oksenych, Valentyn; Bjørås, Magnar; Anthonsen, Marit W.; Shum, David; Kaarbø, Mari; Vapalahti, Olli; Windisch, Marc P.; Superti-Furga, Giulio; Snijder, Berend; Kainov, Denis; Kandasamy, Richard K. 2019 2019-10-04 COMM-USE N PMC6787150 31636628.0 10.3389/fimmu.2019.02186 4x1j0iqg 0.410517 Berkhout_2006, Trobaugh_2017, Lester_2014, Shi_J_2012, Haasnoot_2010 Bösl_2019, Durmuş_2017, Meliopoulos_2012, McDermott_2016
557 Abernathy_2015 Viral Nucleases Induce an mRNA Degradation-Transcription Feedback Loop in Mammalian Cells Abernathy, Emma; Gilbertson, Sarah; Alla, Ravi; Glaunsinger, Britt 2015 2015-08-12 None N PMC4538998 26211836.0 10.1016/j.chom.2015.06.019 rybce5bj 0.409653 Blank_2017, Ivanova_2015, Yasuda-Inoue_2013, Meyerson_2017 Hartenian_2020, Hartenian_2019, Shi_S_2000
558 Qiu_Y_2014 The RNA binding of protein A from Wuhan nodavirus is mediated by mitochondrial membrane lipids Qiu, Yang; Miao, Meng; Wang, Zhaowei; Liu, Yongxiang; Yang, Jie; Xia, Hongjie; Li, Xiao-Feng; Qin, Cheng-Feng; Hu, Yuanyang; Zhou, Xi 2014 2014-08-31 PMC N PMC7112130 25092456.0 10.1016/j.virol.2014.05.022 w4j7uytg 0.409653 Stork_2011, Yasuda-Inoue_2013, Meyerson_2017, Kang_2009, den_Boon_2010 Zhang_2015, Neufeldt_2016
559 van_Hemert_2008 SARS-Coronavirus Replication/Transcription Complexes Are Membrane-Protected and Need a Host Factor for Activity In Vitro van Hemert, Martijn J.; van den Worm, Sjoerd H. E.; Knoops, Kèvin; Mommaas, A. Mieke; Gorbalenya, Alexander E.; Snijder, Eric J. 2008 2008-05-02 COMM-USE N PMC2322833 18451981.0 10.1371/journal.ppat.1000054 cc7eh1mf 0.409193 Stork_2011, den_Boon_2010, Yasuda-Inoue_2013, Meyerson_2017, Rice_1992 Wang_2009
560 Barry_2010 Poxvirus Exploitation of the Ubiquitin-Proteasome System Barry, Michele; van Buuren, Nicholas; Burles, Kristin; Mottet, Kelly; Wang, Qian; Teale, Alastair 2010 2010-10-19 COMM-USE N PMC3185573 21994622.0 10.3390/v2102356 zpyz1krq 0.407825 Taschuk_2020, Choudhury_2017, Bailey-Elkin_2017, Klein_2011 Si_X_2008, Bailey-Elkin_2017, Honke_2016
561 Vogels_2011 Quantitative proteomic identification of host factors involved in the Salmonella typhimurium infection cycle Vogels, Mijke W.; van Balkom, Bas W. M.; Heck, Albert J. R.; de Haan, Cornelis A. M.; Rottier, Peter J. M.; Batenburg, Joseph J.; Kaloyanova, Dora V.; Helms, J. Bernd 2011 2011-10-28 PMC N PMC7167899 21919203.0 10.1002/pmic.201100224 ewe4k0m9 0.407077 Volmer_2010, Trobaugh_2017, Greene_2012, Haasnoot_2010, Berkhout_2006
562 Ziegler_2018 Host-Driven Phosphorylation Appears to Regulate the Budding Activity of the Lassa Virus Matrix Protein Ziegler, Christopher M.; Eisenhauer, Philip; Manuelyan, Inessa; Weir, Marion E.; Bruce, Emily A.; Ballif, Bryan A.; Botten, Jason 2018 2018-12-09 COMM-USE N PMC6313517 30544850.0 10.3390/pathogens7040097 kesr5rkj 0.407005 Volmer_2010, Ban_J_2018, Kumar_2016, Meyerson_2017, Kang_2009 Sun_D_2016, Zhang_2015
563 Gaur_2011 Influenza virus and cell signaling pathways Gaur, Pratibha; Munjal, Ashok; Lal, Sunil K. 2011 2011-06-01 PMC N PMC3539548 21629204.0 10.12659/msm.881801 jfrg9soy 0.406550 Dixit_2013, Lester_2014, Mao_J_2019, Shi_J_2012, Ban_J_2018 Brass_2009, Cooray_2007
564 Baillet_2019 E3 Ligase ITCH Interacts with the Z Matrix Protein of Lassa and Mopeia Viruses and Is Required for the Release of Infectious Particles Baillet, Nicolas; Krieger, Sophie; Carnec, Xavier; Mateo, Mathieu; Journeaux, Alexandra; Merabet, Othmann; Caro, Valérie; Tangy, Frédéric; Vidalain, Pierre-Olivier; Baize, Sylvain 2019 2019-12-31 COMM-USE N PMC7019300 31906112.0 10.3390/v12010049 fwjrnpoj 0.406478 Ryu_W_2017, Tallmadge_2008, Meyerson_2017, Lu_P_2016, Ban_J_2018 Deng_2019, van_der_Linden_2014
565 Popescu_2014 Hepatitis C Virus Life Cycle and Lipid Metabolism Popescu, Costin-Ioan; Riva, Laura; Vlaicu, Ovidiu; Farhat, Rayan; Rouillé, Yves; Dubuisson, Jean 2014 2014-12-15 COMM-USE N PMC4280516 25517881.0 10.3390/biology3040892 h0n3qpjk 0.406237 Potgieter_1986, Colpitts_2020, Trobaugh_2017, den_Boon_2010 Mingorance_2018, Ke_P_2012, Ikeda_2007, Saleh_2018
566 Miorin_2016 Visual detection of Flavivirus RNA in living cells Miorin, Lisa; Maiuri, Paolo; Marcello, Alessandro 2016 2016-04-01 PMC N PMC7129942 26542763.0 10.1016/j.ymeth.2015.11.002 owhzzf9h 0.405703 Rice_1992, den_Boon_2010, Trobaugh_2017, Stork_2011, Herbert_2016 Wulan_2015, Sun_D_2016
567 Stapleford_2015 Viral Polymerase-Helicase Complexes Regulate Replication Fidelity To Overcome Intracellular Nucleotide Depletion Stapleford, Kenneth A.; Rozen-Gagnon, Kathryn; Das, Pratyush Kumar; Saul, Sirle; Poirier, Enzo Z.; Blanc, Hervé; Vidalain, Pierre-Olivier; Merits, Andres; Vignuzzi, Marco 2015 2015-08-26 NONCOMM N PMC4645662 26311883.0 10.1128/jvi.01553-15 b6aklh44 0.405682 Stork_2011, den_Boon_2010, Rice_1992, Yasuda-Inoue_2013, Meyerson_2017 Masante_2015
568 Čiplys_2011 Overexpression of human virus surface glycoprotein precursors induces cytosolic unfolded protein response in Saccharomyces cerevisiae Čiplys, Evaldas; Samuel, Dhanraj; Juozapaitis, Mindaugas; Sasnauskas, Kęstutis; Slibinskas, Rimantas 2011 2011-05-19 COMM-USE N PMC3120639 21595909.0 10.1186/1475-2859-10-37 9i798wge 0.405557 Volmer_2010, Stork_2011, Shi_S_2000, Trobaugh_2017, Stoecklin_2012 Eshaghi_2005, Niemann_1982, Zhang_2015, Loa_C_2004
569 Sager_2018 Role of Host Cell Secretory Machinery in Zika Virus Life Cycle Sager, Garrett; Gabaglio, Samuel; Sztul, Elizabeth; Belov, George A. 2018 2018-10-15 COMM-USE N PMC6213159 30326556.0 10.3390/v10100559 m8ktaq1w 0.405452 Berkhout_2006, den_Boon_2010, Rice_1992, Mao_J_2019, Kindler_2014 Neufeldt_2016, Sun_D_2016
570 Kovalev_2012 A Co-Opted DEAD-Box RNA Helicase Enhances Tombusvirus Plus-Strand Synthesis Kovalev, Nikolay; Pogany, Judit; Nagy, Peter D. 2012 2012-02-16 COMM-USE N PMC3280988 22359508.0 10.1371/journal.ppat.1002537 jhetyd9t 0.405128 Stork_2011, Yasuda-Inoue_2013, Li_Z_2010, den_Boon_2010 Sasvari_2011, Yasuda-Inoue_2013, Li_Z_2009
571 Quiner_2010 Fragmentation of the Golgi apparatus provides replication membranes for human rhinovirus 1A Quiner, Claire A.; Jackson, William T. 2010 2010-11-25 None N PMC7111317 20825962.0 10.1016/j.virol.2010.08.012 pe5g7wwy 0.404661 Volmer_2010, den_Boon_2010, UNKNOWN_1995, Terrier_2016 Risco_2003, Neufeldt_2016
572 Mohr_2012 Host Translation at the Nexus of Infection and Immunity Mohr, Ian; Sonenberg, Nahum 2012 2012-10-18 PMC N PMC7104986 23084916.0 10.1016/j.chom.2012.09.006 kgk7n391 0.403394 Lester_2014, Hertzog_2011, Mao_J_2019, Viswanathan_2010 Gaucherand_2019, Roberts_2009
573 Chang_2012 Functional Studies of ssDNA Binding Ability of MarR Family Protein TcaR from Staphylococcus epidermidis Chang, Yu-Ming; Chen, Cammy K. -M.; Chang, Yuan-Chih; Jeng, Wen-Yih; Hou, Ming-Hon; Wang, Andrew H. -J. 2012 2012-09-21 COMM-USE N PMC3448645 23029170.0 10.1371/journal.pone.0045665 r7y1cqou 0.403319 Blank_2017, Stork_2011, Yasuda-Inoue_2013, Gorbalenya_1988, Choudhury_2017 Zhang_2015, Deng_2019
574 Stachowiak_2013 A cost-benefit analysis of the physical mechanisms of membrane curvature Stachowiak, Jeanne C.; Brodsky, Frances M.; Miller, Elizabeth A. 2013 2013-09-01 PMC N PMC3813008 23999615.0 10.1038/ncb2832 u5rgdc8j 0.403187 Weissenhorn_2013, Hurley_2014, Tessier_2019, Cosson_2013 Chabanon_2019, Collins_2012, Caplan_1991
575 Chan_2010 Implications for lipids during replication of enveloped viruses Chan, Robin B.; Tanner, Lukas; Wenk, Markus R. 2010 2010-06-30 PMC N PMC7124286 20230810.0 10.1016/j.chemphyslip.2010.03.002 y7v7bm0b 0.403187 Lu_P_2016, Tallmadge_2008, Potgieter_1986, den_Boon_2010, Ryu_W_2017 Watanabe_2019, Wang_2016, Giorda_2013, Wulan_2015
576 Vogels_2011 Identification of host factors involved in coronavirus replication by quantitative proteomics analysis Vogels, Mijke W.; van Balkom, Bas W. M.; Kaloyanova, Dora V.; Batenburg, Joseph J.; Heck, Albert J.; Helms, J. Bernd; Rottier, Peter J. M.; de Haan, Cornelis A. M. 2011 2011-01-01 PMC N PMC7167679 21182195.0 10.1002/pmic.201000309 87go3nm7 0.403096 Volmer_2010, Trobaugh_2017, Rice_1992, Berkhout_2006, den_Boon_2010
577 Kellam_2006 Infectogenomics: Insights from the Host Genome into Infectious Diseases Kellam, Paul; Weiss, Robin A. 2006 2006-02-24 PMC N PMC7119327 16497580.0 10.1016/j.cell.2006.02.003 747du9a1 0.402451 UNKNOWN_2004, Tan_S_2007, Johnson_2018, Tong_2011 Narayanan_2015, Haagmans_2009, Musser_2015, Anderson_2020
578 Raman_2016 Glycan–protein interactions in viral pathogenesis Raman, Rahul; Tharakaraman, Kannan; Sasisekharan, V; Sasisekharan, Ram 2016 2016-10-31 None N PMC5526076 27792989.0 10.1016/j.sbi.2016.10.003 30d7t5bf 0.402442 Lester_2014, Kindler_2014, Viswanathan_2010, Monteiro_2017 Watanabe_2019, Suenaga_2014, Vigerust_2011, Zhang_2015
579 Garcia_2014 Nonsense-Mediated Decay Serves as a General Viral Restriction Mechanism in Plants Garcia, Damien; Garcia, Shahinez; Voinnet, Olivier 2014 2014-09-10 PMC N 25155460.0 10.1016/j.chom.2014.08.001 xkcqo86y 0.402442 Rice_1992, Trobaugh_2017, Herbert_2016, Berkhout_2006, Stork_2011 Case_2017, Chemudupati_2019, Sasvari_2009
580 Striebinger_2013 A High-Throughput Yeast Two-Hybrid Protocol to Determine Virus-Host Protein Interactions Striebinger, Hannah; Koegl, Manfred; Bailer, Susanne M. 2013 2013-07-20 PMC N PMC7122120 23996246.0 10.1007/978-1-62703-601-6_1 zbjaslsa 0.402333 Rajagopala_2015, He_R_2008, Berkhout_2006, Siridechadilok_2013 Gaggar_2007, van_der_Linden_2014
581 Wang_2010 Interactions of SARS Coronavirus Nucleocapsid Protein with the host cell proteasome subunit p42 Wang, Qin; Li, Chuan; Zhang, Quanfu; Wang, Tao; Li, Jiandong; Guan, Wuxiang; Yu, Jianshi; Liang, Mifang; Li, Dexin 2010 2010-05-17 COMM-USE N PMC2894783 20478047.0 10.1186/1743-422x-7-99 al8irm9i 0.401979 Ban_J_2018, Meyerson_2017, Greene_2012, Volmer_2010, Kumar_2016 Zhang_2015, Ren_A_2004, Du_L_2007, Wang_2009
582 Duchon_2018 Chapter 12 Noncoding RNAs in Retrovirus Replication Duchon, Alice A.; Musier-Forsyth, Karin 2018 2018-12-31 PMC N 10.1016/b978-0-12-811185-7.00012-1 uqyi6ipi 0.401777 Trobaugh_2017, Rice_1992, Herbert_2016, Yasuda-Inoue_2013, Haasnoot_2010
583 Cantara_2014 Progress and outlook in structural biology of large viral RNAs Cantara, William A.; Olson, Erik D.; Musier-Forsyth, Karin 2014 2014-11-26 None N PMC4252365 24956407.0 10.1016/j.virusres.2014.06.007 u0gxkp3u 0.401719 Trobaugh_2017, Rice_1992, den_Boon_2010, Berkhout_2006, Haasnoot_2010 Masante_2015, Wulan_2015
584 Griffiths_1992 Cell biology of viruses that assemble along the biosynthetic pathway Griffiths, Gareth; Rottier, Peter 1992 1992-10-31 PMC N PMC7129301 1333835.0 10.1016/1043-4682(92)90022-n t42gasmz 0.401360 Volmer_2010, Weissenhorn_2013, Haasnoot_2010, den_Boon_2010, Trobaugh_2017 Grangeon_2012, Watanabe_2019, Sun_D_2016, Giorda_2013
585 Ward_2011 The taking of the cytoskeleton one two three: How viruses utilize the cytoskeleton during egress Ward, Brian M. 2011 2011-03-15 None N PMC3049855 21241997.0 10.1016/j.virol.2010.12.024 efkm1tg4 0.401224 Weissenhorn_2013, Roman_1985, den_Boon_2010, Hobman_1993 de_Haan_2005, Sze_C_2015, Grangeon_2012, Griffiths_1992
586 Amaya_2016 Venezuelan equine encephalitis virus non-structural protein 3 (nsP3) interacts with RNA helicases DDX1 and DDX3 in infected cells Amaya, Moushimi; Brooks-Faulconer, Taryn; Lark, Tyler; Keck, Forrest; Bailey, Charles; Raman, Venu; Narayanan, Aarthi 2016 2016-07-31 PMC N PMC7113772 27105836.0 10.1016/j.antiviral.2016.04.008 e4e0kzio 0.400582 Rice_1992, Li_C_2014, Tallmadge_2008, Trobaugh_2017, Berkhout_2006 Valle-Casuso_2020, Lundberg_2018, Jiang_2017
587 Greseth_2014 De novo Fatty Acid Biosynthesis Contributes Significantly to Establishment of a Bioenergetically Favorable Environment for Vaccinia Virus Infection Greseth, Matthew D.; Traktman, Paula 2014 2014-03-20 COMM-USE N PMC3961357 24651651.0 10.1371/journal.ppat.1004021 j33faib3 0.400322 Meyerson_2017, Greene_2012, Volmer_2010, Trobaugh_2017, Berkhout_2006 Mingorance_2018, Zhang_2015
588 Schmitz_2014 The intricate interplay between RNA viruses and NF-κB Schmitz, M. Lienhard; Kracht, Michael; Saul, Vera V. 2014 2014-11-30 PMC N PMC7114235 25116307.0 10.1016/j.bbamcr.2014.08.004 47nukrdh 0.398914 Lester_2014, Trobaugh_2017, Berkhout_2006, Rice_1992, Kindler_2014 Case_2017, Chemudupati_2019
589 San_Martín_2013 Structure and Assembly of Complex Viruses San Martín, Carmen 2013 2013-02-16 PMC N PMC7122652 23737057.0 10.1007/978-94-007-6552-8_11 0x3nt6si 0.398325 den_Boon_2010, Rice_1992, Volmer_2010, Zúñiga_2009, Weissenhorn_2013 Hellen_1992, Wulan_2015, Risco_2003, Rott_1987
590 von_Hahn_2015 Cyclophilin polymorphism and virus infection von Hahn, Thomas; Ciesek, Sandra 2015 2015-10-31 PMC N PMC7102842 26281011.0 10.1016/j.coviro.2015.07.012 6xm0b5el 0.397376 Trobaugh_2017, Haasnoot_2010, Herbert_2016, Rice_1992 Zhou_2012, Sun_D_2016, Hopkins_2015, Rott_1987
591 Si_X_2008 Ubiquitination Is Required for Effective Replication of Coxsackievirus B3 Si, Xiaoning; Gao, Guang; Wong, Jerry; Wang, Yahong; Zhang, Jingchun; Luo, Honglin 2008 2008-07-09 COMM-USE N PMC2440516 18612413.0 10.1371/journal.pone.0002585 lrtt9r1h 0.397070 Meyerson_2017, Ban_J_2018, Greene_2012, Trobaugh_2017, Martín-Vicente_2017 Yan_J_2020, Deng_2019
592 Aulas_2015 Alterations in stress granule dynamics driven by TDP-43 and FUS: a link to pathological inclusions in ALS? Aulas, Anaïs; Vande Velde, Christine 2015 2015-10-23 COMM-USE N PMC4615823 26557057.0 10.3389/fncel.2015.00423 vrnonccy 0.395270 Haasnoot_2010, Emmott_2009, Stoecklin_2012, Trobaugh_2017 Monahan_2016, Amlie-Wolf_2015
593 Galao_2007 Saccharomyces cerevisiae: a versatile eukaryotic system in virology Galao, Rui P; Scheller, Nicoletta; Alves-Rodrigues, Isabel; Breinig, Tanja; Meyerhans, Andreas; Díez, Juana 2007 2007-10-10 COMM-USE N PMC2148055 17927824.0 10.1186/1475-2859-6-32 ffn59sgf 0.395222 Berkhout_2006, Shi_J_2012, Taschuk_2020, Wang_2018, Conzelmann_1996 Alves-Rodrigues_2006, Hughes_2012, Zhao_2017, Andréola_2012
594 Fung_2019 The ER stress sensor IRE1 and MAP kinase ERK modulate autophagy induction in cells infected with coronavirus infectious bronchitis virus Fung, To Sing; Liu, Ding Xiang 2019 2019-07-31 PMC N PMC7112053 31082732.0 10.1016/j.virol.2019.05.002 4ltswuwi 0.395053 Greene_2012, Ban_J_2018, Kumar_2016, Sir_D_2008, Mitomo_2016 Chen_2014, LUO_X_2018, Ávila-Pérez_2019, Ding_2017
595 Haughey_2011 Roles for Biological Membranes in Regulating Human Immunodeficiency Virus Replication and Progress in the Development of HIV Therapeutics that Target Lipid Metabolism Haughey, Norman J.; Tovar-y-Romo, Luis B.; Bandaru, Veera Venkata Ratnam 2011 2011-03-29 PMC N PMC3417146 21445582.0 10.1007/s11481-011-9274-7 526yckze 0.394438 Mao_J_2019, Trobaugh_2017, Kim_S_2018, Potgieter_1986 Ma_G_2004, Dumas_2014, Watanabe_2019, Hopkins_2015
596 Oishi_2018 N-terminal acetylation by NatB is required for the shutoff activity of influenza A virus PA-X Oishi, Kohei; Yamayoshi, Seiya; Kozuka-Hata, Hiroko; Oyama, Masaaki; Kawaoka, Yoshihiro 2018 2018-07-01 PMC N PMC6296758 30044982.0 10.1016/j.celrep.2018.06.078 hgcxrbvm 0.394263 Blank_2017, Meyerson_2017, Yasuda-Inoue_2013, Ban_J_2018 Deng_2019
597 Luo_H_2005 The nucleocapsid protein of SARS coronavirus has a high binding affinity to the human cellular heterogeneous nuclear ribonucleoprotein A1 Luo, Haibin; Chen, Qing; Chen, Jing; Chen, Kaixian; Shen, Xu; Jiang, Hualiang 2005 2005-05-09 PMC N PMC7094256 15862300.0 10.1016/j.febslet.2005.03.080 cxv3m4u1 0.394097 Shi_S_2000, Volmer_2010, Yasuda-Inoue_2013, Kang_2009, Blank_2017 Han_M_2008, Masters_1992, Wang_2009
598 Besson_2019 Kinome-Wide RNA Interference Screening Identifies Mitogen-Activated Protein Kinases and Phosphatidylinositol Metabolism as Key Factors for Rabies Virus Infection Besson, Benoit; Kim, Seonhee; Kim, Taehee; Ko, Yoonae; Lee, Sangchul; Larrous, Florence; Song, Jihwan; Shum, David; Grailhe, Regis; Bourhy, Hervé 2019 2019-05-22 COMM-USE N PMC6531879 31118297.0 10.1128/msphere.00047-19 rbhr1qso 0.393800 Kumar_2016, Berkhout_2006, Trobaugh_2017, Haasnoot_2010, Ban_J_2018 Li_Z_2009
599 Enard_2016 Viruses are a dominant driver of protein adaptation in mammals Enard, David; Cai, Le; Gwennap, Carina; Petrov, Dmitri A 2016 2016-05-17 COMM-USE N PMC4869911 27187613.0 10.7554/elife.12469 mjaqt6wk 0.393090 Volmer_2010, Berkhout_2006, Haasnoot_2010, Taschuk_2020, Trobaugh_2017 Enard_2015, Bahir_2009, Schein_2018
600 Ulferts_2009 Expression and Functions of SARS Coronavirus Replicative Proteins Ulferts, Rachel; Imbert, Isabelle; Canard, Bruno; Ziebuhr, John 2009 2009-07-22 PMC N PMC7124140 10.1007/978-3-642-03683-5_6 4qu9j953 0.393090 den_Boon_2010, Rice_1992, Stork_2011, Trobaugh_2017, Ryu_W_2017 Graham_2008, Niemeyer_2018
601 Schmidt_2015 Remote Activation of Host Cell DNA Synthesis in Uninfected Cells Signaled by Infected Cells in Advance of Virus Transmission Schmidt, Nora; Hennig, Thomas; Serwa, Remigiusz A.; Marchetti, Magda; O'Hare, Peter 2015 2015-08-26 COMM-USE N PMC4621119 26311877.0 10.1128/jvi.01950-15 u4a8q76v 0.392394 Trobaugh_2017, Berkhout_2006, den_Boon_2010, Hull_2014, Shi_J_2012 Bagga_2014, Wulan_2015
602 Wang_2011 Viral proteins function as ion channels Wang, Kai; Xie, Shiqi; Sun, Bing 2011 2011-02-28 PMC N PMC7094589 20478263.0 10.1016/j.bbamem.2010.05.006 d0bswz2u 0.392182 Compton_2014, den_Boon_2010, Yasuda-Inoue_2013, Trobaugh_2017 Sze_C_2015, Nieto-Torres_2015, Fulcher_2011, Nieva_2012
603 Zhang_2010 Profiling of cellular proteins in porcine reproductive and respiratory syndrome virus virions by proteomics analysis Zhang, Chengwen; Xue, Chunyi; Li, Yan; Kong, Qingming; Ren, Xiangpeng; Li, Xiaoming; Shu, Dingming; Bi, Yingzuo; Cao, Yongchang 2010 2010-09-18 COMM-USE N PMC2949843 20849641.0 10.1186/1743-422x-7-242 9vpzk6wu 0.391400 Volmer_2010, Rice_1992, den_Boon_2010, Shi_S_2005, Compton_2014 Zhang_2015, Kong_2010, Ding_2012, Ren_X_2012
604 Carrasco_1995 Modification of Membrane Permeability by Animal Viruses Carrasco, Luis 1995 1995-12-31 PMC N 7793329.0 10.1016/s0065-3527(08)60058-5 nth8c1zr 0.390736 Compton_2014, den_Boon_2010, Tallmadge_2008, Rice_1992, Lenard_2008 Wulan_2015, Villanueva_2005
605 Kirchdoerfer_2019 Structure of the SARS-CoV NSP12 polymerase bound to NSP7 and NSP8 co-factors Robert N. Kirchdoerfer; Andrew B. Ward 2019 2019-02-15 BioRxiv N 10.1101/551986 tz3ik2b5 0.388945 den_Boon_2010, Stork_2011, Pong_2011, Rice_1992, Meyerson_2017 Kirchdoerfer_2019, Subissi_2014
606 Zhou_2018 A generalized approach to predicting protein-protein interactions between virus and host Zhou, Xiang; Park, Byungkyu; Choi, Daesik; Han, Kyungsook 2018 2018-08-13 COMM-USE N PMC6101077 30367586.0 10.1186/s12864-018-4924-2 4uvezfqm 0.388451 Naito_2007, Berkhout_2006, Trobaugh_2017, Chang_2011 Goodacre_2020, Durmuş_2017, Popescu_2011, Han_L_2017
607 Pumroy_2015 Diversification of importin-α isoforms in cellular trafficking and disease states Pumroy, Ruth A.; Cingolani, Gino 2015 2015-02-06 PMC N PMC4405237 25656054.0 10.1042/bj20141186 wkjn42c1 0.387931 Ivarsson_2012, Volmer_2010, Cosson_2013, Choudhury_2017, Blank_2017 Yasuhara_2016, Deng_2019, Voß_D_2009
608 Scutigliani_2017 Interaction of the innate immune system with positive-strand RNA virus replication organelles Scutigliani, Enzo Maxim; Kikkert, Marjolein 2017 2017-10-31 PMC N PMC7108334 28709747.0 10.1016/j.cytogfr.2017.05.007 gf0bglm0 0.387748 Lester_2014, Dixit_2013, Berkhout_2006, Shi_J_2012, Kindler_2014 Neufeldt_2016
609 Zhang_2019 Involvement of PRRSV NSP3 and NSP5 in the autophagy process Zhang, Wei; Chen, Keren; Guo, Yang; Chen, Yaosheng; Liu, Xiaohong 2019 2019-01-28 COMM-USE N PMC6350329 30691473.0 10.1186/s12985-019-1116-x dzin12qb 0.387748 Greene_2012, Hurley_2014, Volmer_2010, Ban_J_2018, UNKNOWN_1995 Ding_2017, LUO_X_2018
610 Teissier_2010 Targeting Cell Entry of Enveloped Viruses as an Antiviral Strategy Teissier, Elodie; Penin, François; Pécheur, Eve-Isabelle 2010 2010-12-30 COMM-USE N PMC6259279 21193846.0 10.3390/molecules16010221 nqw6y8ku 0.387361 Berkhout_2006, Trobaugh_2017, Compton_2014, Kindler_2014, Rice_1992 Beitari_2019, Lee_C_2019, Watanabe_2019, A_Abdullah_2018
611 Heise_2014 Viral Pathogenesis Heise, M.T. 2014 2014-12-31 PMC N PMC7157475 10.1016/b978-0-12-801238-3.00079-9 nreqluol 0.387022 Potgieter_1986, Lu_P_2016, Rivas_2016, Fauci_2006 Hibbs_1995, Cann_2016, Cann_2012, Weis_2019
612 Ding_2017 Induction of Atypical Autophagy by Porcine Hemagglutinating Encephalomyelitis Virus Contributes to Viral Replication Ding, Ning; Zhao, Kui; Lan, Yungang; Li, Zi; Lv, Xiaoling; Su, Jingjing; Lu, Huijun; Gao, Feng; He, Wenqi 2017 2017-02-28 COMM-USE N PMC5328988 28293544.0 10.3389/fcimb.2017.00056 uaaj66xq 0.386457 Greene_2012, Sir_D_2008, Perez_Vidakovics_2019, Ban_J_2018, Volmer_2010 Chen_2012
613 Chen_2017 Autophagy pathway induced by a plant virus facilitates viral spread and transmission by its insect vector Chen, Yong; Chen, Qian; Li, Manman; Mao, Qianzhuo; Chen, Hongyan; Wu, Wei; Jia, Dongsheng; Wei, Taiyun 2017 2017-11-10 COMM-USE N PMC5708841 29125860.0 10.1371/journal.ppat.1006727 4rj2agn2 0.386457 Berkhout_2006, Mao_J_2019, Compton_2014, Trobaugh_2017 Ding_2017, O'Donnell_2011, Ávila-Pérez_2019, Guo_L_2016
614 Woo_B_2019 Regulatory interplay between deubiquitinating enzymes and cytokines Woo, Bean; Baek, Kwang-Hyun 2019 2019-08-31 PMC N PMC7108389 31208841.0 10.1016/j.cytogfr.2019.06.001 lvm11o4r 0.385772 Viswanathan_2010, Bailey-Elkin_2017, Taschuk_2020, Choudhury_2017 Bailey-Elkin_2017, Deng_2019
615 Zhang_2010 Quantitative Proteomics Analysis Reveals BAG3 as a Potential Target To Suppress Severe Acute Respiratory Syndrome Coronavirus Replication Zhang, Liang; Zhang, Zhi-Ping; Zhang, Xian-En; Lin, Fu-Sen; Ge, Feng 2010 2010-04-14 None Y PMC2876644 20392858.0 10.1128/jvi.00213-10 3yb2lbje 0.385001 Trobaugh_2017, Berkhout_2006, Rice_1992, Haasnoot_2010, Meyerson_2017 Niemeyer_2018, Wang_2009, Ge_F_2008, Narayanan_2015
616 Aguiar_2016 Virus‐derived small RNAs: molecular footprints of host–pathogen interactions Aguiar, Eric Roberto Guimarães Rocha; Olmo, Roenick Proveti; Marques, João Trindade 2016 2016-05-12 PMC N PMC7169819 27170499.0 10.1002/wrna.1361 0v71xwqy 0.385001 Rice_1992, Stork_2011, Trobaugh_2017, den_Boon_2010, Herbert_2016
617 Thompson_2012 Role of Coatomer Protein I in Virus Replication Thompson, Jennifer A.; Brown, Jay C. 2012 2012-01-01 PMC N PMC3879076 24392458.0 10.4172/2324-8955.1000102 pa28rif6 0.384419 UNKNOWN_1995, Jonker_2018, Weissenhorn_2013, Hurley_2014 UNKNOWN_1995, Fulcher_2011, Zhang_2015
618 Trincone_2015 Looking for a needle in a haystack: Cellular proteins that may interact with the tyrosine-based sorting signal of the TGEV S protein Trincone, Anna; Schwegmann-Weßels, Christel 2015 2015-04-16 PMC N PMC7114463 25481285.0 10.1016/j.virusres.2014.11.029 elway9lp 0.384419 Volmer_2010, Greene_2012, Wodrich_2010, Li_C_2014 Zhang_2015, Chen_1991
619 He_R_2008 Mammalian Two-Hybrid Assay for Detecting Protein-Protein Interactions in Vivo He, Runtao; Li, Xuguang 2008 2008-01-01 PMC N PMC7120061 18370113.0 10.1007/978-1-59745-188-8_22 fc24n7f8 0.384384 UNKNOWN_2004, Liu_Z_2008, Tessier_2019, Berkhout_2006 van_der_Linden_2014, Zhang_2015, Chen_2009
620 de_Wilde_2017 Host Factors in Coronavirus Replication de Wilde, Adriaan H.; Snijder, Eric J.; Kikkert, Marjolein; van Hemert, Martijn J. 2017 2017-06-23 PMC N PMC7119980 28643204.0 10.1007/82_2017_25 ddza1x3z 0.384070 Lu_P_2016, Potgieter_1986, Fauci_2006, den_Boon_2010, Trobaugh_2017 Tanaka_2013, Millet_2015, Sims_2008
621 Al-Mulla_2014 Competitive Fitness in Coronaviruses Is Not Correlated with Size or Number of Double-Membrane Vesicles under Reduced-Temperature Growth Conditions Al-Mulla, Hawaa M. N.; Turrell, Lauren; Smith, Nicola M.; Payne, Luke; Baliji, Surendranath; Züst, Roland; Thiel, Volker; Baker, Susan C.; Siddell, Stuart G.; Neuman, Benjamin W. 2014 2014-04-01 NONCOMM N PMC3977362 24692638.0 10.1128/mbio.01107-13 tfuupgkg 0.383833 Volmer_2010, den_Boon_2010, Stork_2011, Rice_1992, Compton_2014 Clementz_2008
622 Bayliss_2018 Masters of manipulation: Viral modulation of the immunological synapse Bayliss, Rebecca J.; Piguet, Vincent 2018 2018-09-21 COMM-USE N PMC6492149 30123959.0 10.1111/cmi.12944 w0zjs8k7 0.383738 Mao_J_2019, Lester_2014, Kim_S_2018, Kindler_2014, Bermejo-Jambrina_2018 Galluzzi_2008, Phares_2013, Bagga_2014, Rothhammer_2014
623 Wang_2017 Optical Imaging Paves the Way for Autophagy Research Wang, Yimin; Li, Yu; Wei, Fujing; Duan, Yixiang 2017 2017-12-31 PMC N PMC7114199 28916049.0 10.1016/j.tibtech.2017.08.006 3buvkluh 0.383235 UNKNOWN_2004, Postigo_2009, Johnson_2018, Kim_S_2018 Jacomin_2018, Subramani_2013, Subauste_2009, Rey-Jurado_2015
624 Amaya_2014 The role of the IKK complex in viral infections Amaya, Moushimi; Keck, Forrest; Bailey, Charles; Narayanan, Aarthi 2014 2014-10-01 PMC N PMC7108545 25082354.0 10.1111/2049-632x.12210 zsa23vhy 0.382601 Postigo_2009, Berkhout_2006, Lester_2014, Shi_J_2012, Trobaugh_2017 van_Tol_2017, Hiscott_2006
625 Hughes_2012 Drosophila as a genetic model for studying pathogenic human viruses Hughes, Tamara T.; Allen, Amanda L.; Bardin, Joseph E.; Christian, Megan N.; Daimon, Kansei; Dozier, Kelsey D.; Hansen, Caom L.; Holcomb, Lisa M.; Ahlander, Joseph 2012 2012-02-05 PMC N PMC3253880 22177780.0 10.1016/j.virol.2011.11.016 n3p4wefa 0.382367 Berkhout_2006, Denison_2008, Cullen_2009, Conzelmann_1996, Wang_2018 Omel’yanchuk_2011, Lassnig_2005, Panayidou_2014
626 Lai_M_2015 DDX3 functions in antiviral innate immunity through translational control of PACT Lai, Ming‐Chih; Sun, H. Sunny; Wang, Shainn‐Wei; Tarn, Woan‐Yuh 2015 2015-10-31 PMC N PMC7164078 26454002.0 10.1111/febs.13553 ploi4wh2 0.382360 Yasuda-Inoue_2013, Ban_J_2018, Meyerson_2017, Blank_2017, Greene_2012
627 Lin_Y_2017 Intrinsically disordered sequences enable modulation of protein phase separation through distributed tyrosine motifs Lin, Yuan; Currie, Simon L.; Rosen, Michael K. 2017 2017-11-17 COMM-USE N PMC5704491 28924037.0 10.1074/jbc.m117.800466 px0cz6qn 0.382181 Ivarsson_2012, Volmer_2010, UNKNOWN_1987, Smith_2003, Yang_2012 Järvelin_2016, Zhang_2015, Singleton_2018
628 Tetz_2018 Prion-like Domains in Eukaryotic Viruses Tetz, George; Tetz, Victor 2018 2018-06-12 COMM-USE N PMC5997743 29895872.0 10.1038/s41598-018-27256-w l29ovsgr 0.382137 Trobaugh_2017, Haasnoot_2010, Taschuk_2020, Berkhout_2006, Rice_1992 Schein_2018, Ao_D_2015, Zhang_2015, Deng_2019
629 Li_S_2010 New nsp8 isoform suggests mechanism for tuning viral RNA synthesis Li, Shuang; Zhao, Qi; Zhang, Yinjie; Zhang, Yang; Bartlam, Mark; Li, Xuemei; Rao, Zihe 2010 2010-02-01 PMC N PMC4875168 21203988.0 10.1007/s13238-010-0028-8 gtajz6jr 0.381085 Meyerson_2017, Pong_2011, Stork_2011, Kang_2009, den_Boon_2010
630 FENNER_1987 CHAPTER 1 Structure and Composition of Viruses FENNER, FRANK; BACHMANN, PETER A.; GIBBS, E. PAUL J.; MURPHY, FREDERICK A.; STUDDERT, MICHAEL J.; WHITE, DAVID O. 1987 1987-12-31 PMC N 10.1016/b978-0-12-253055-5.50005-0 16wrx34u 0.381060 Volmer_2010, den_Boon_2010, Rice_1992, Payne_2017, Stork_2011
631 Rehwinkel_2013 Targeting the viral Achilles’ heel: recognition of 5′-triphosphate RNA in innate anti-viral defence Rehwinkel, Jan; Reis e Sousa, Caetano 2013 2013-08-31 PMC N 23707340.0 10.1016/j.mib.2013.04.009 bnzd7b25 0.380504 Dixit_2013, Herbert_2016, Ban_J_2018, Meyerson_2017 Case_2017
632 Grove_2011 The cell biology of receptor-mediated virus entry Grove, Joe; Marsh, Mark 2011 2011-12-26 NONCOMM N PMC3246895 22123832.0 10.1083/jcb.201108131 v4op73hf 0.380341 Lester_2014, Roman_1985, Mao_J_2019, Kindler_2014 Casasnovas_2013, Giorda_2013, Dumas_2014
633 Martínez_2019 The guanine nucleotide exchange factor GBF1 participates in rotavirus replication José L. Martínez; Francesca Arnoldi; Elisabeth M. Schraner; Catherine Eichwald; Daniela Silva-Ayala; Eunjoo Lee; Elizabeth Sztul; Óscar R. Burrone; Susana López; Carlos F. Arias 2019 2019-04-29 BioRxiv N 10.1101/619924 jkjkkjrf 0.379793 Volmer_2010, Meyerson_2017, den_Boon_2010, Stork_2011, Kang_2009 Papa_2019
634 Levine_2007 Unveiling the roles of autophagy in innate and adaptive immunity Levine, Beth; Deretic, Vojo 2007 2007-01-01 PMC N PMC7097190 17767194.0 10.1038/nri2161 58unu79x 0.379693 Lester_2014, Kim_S_2018, Shi_J_2012, Viswanathan_2010, Mao_J_2019 Schmid_2007, Lee_H_2008, Rey-Jurado_2015, Lin_L_2010
635 Feng_2014 Induction and suppression of innate antiviral responses by picornaviruses Feng, Qian; Langereis, Martijn A.; van Kuppeveld, Frank J.M. 2014 2014-10-31 PMC N 25086453.0 10.1016/j.cytogfr.2014.07.003 8n0jafsk 0.379576 Ryu_W_2017, Crowe_2014, Tallmadge_2008, Meyerson_2017, Rice_1992
636 Ortiz-Riaño_2012 D471G Mutation in LCMV-NP Affects its Ability to Self-associate and Results in a Dominant Negative Effect in Viral RNA Synthesis Ortiz-Riaño, Emilio; Cheng, Benson Y. H.; de la Torre, Juan C.; Martínez-Sobrido, Luis 2012 2012-10-16 COMM-USE N PMC3497045 23202457.0 10.3390/v4102137 xtsi663k 0.379240 Meyerson_2017, Stork_2011, Volmer_2010, Rice_1992, Yasuda-Inoue_2013 Yan_J_2020
637 Muller_2017 Nuclease escape elements protect messenger RNA against cleavage by multiple viral endonucleases Muller, Mandy; Glaunsinger, Britt A. 2017 2017-08-25 COMM-USE N PMC5589255 28841715.0 10.1371/journal.ppat.1006593 3tieiaiq 0.378916 Yasuda-Inoue_2013, Trobaugh_2017, Stork_2011, Herbert_2016, Meyerson_2017 Muller_2017, Mendez_2018, Bhullar_2014
638 Hu_J_2018 PA-X: a key regulator of influenza A virus pathogenicity and host immune responses Hu, Jiao; Ma, Chunxi; Liu, Xiufan 2018 2018-07-04 PMC N PMC7086933 29974232.0 10.1007/s00430-018-0548-z f15rvjok 0.378587 Trobaugh_2017, Berkhout_2006, Shi_J_2012, Haasnoot_2010, Rivas_2016 Vigerust_2011, Terasaki_2016
639 Tang_2005 Three-dimensional structure of the bacteriophage P22 tail machine Tang, Liang; Marion, William R; Cingolani, Gino; Prevelige, Peter E; Johnson, John E 2005 2005-06-02 PMC N PMC1150889 15933718.0 10.1038/sj.emboj.7600695 0x1jhya6 0.378484 den_Boon_2010, Dubois_2016, Rice_1992, Wu_B_2009 Olia_2008
640 Espert_2007 Involvement of autophagy in viral infections: antiviral function and subversion by viruses Espert, Lucile; Codogno, Patrice; Biard-Piechaczyk, Martine 2007 2007-03-06 PMC N PMC7080067 17340132.0 10.1007/s00109-007-0173-6 on3cnr8i 0.378440 Lester_2014, Shi_J_2012, Jang_2019, Kim_S_2018, Rajsbaum_2013 Shoji-Kawata_2009, Cheng_2014, Ding_2017
641 Hung_2015 Amino Terminal Region of Dengue Virus NS4A Cytosolic Domain Binds to Highly Curved Liposomes Hung, Yu-Fu; Schwarten, Melanie; Hoffmann, Silke; Willbold, Dieter; Sklan, Ella H.; Koenig, Bernd W. 2015 2015-07-21 COMM-USE N PMC4517141 26197333.0 10.3390/v7072812 3uwiys4a 0.378159 Volmer_2010, Kang_2009, Pong_2011, Gomis-Rüth_2003, Stork_2011 Voß_D_2009, Kanjanahaluethai_2007, Popescu_2011
642 Murrow_2013 Autophagy As A Stress Response And Quality Control Mechanism—Implications for Cell Injury and Human Disease Murrow, Lyndsay; Debnath, Jayanta 2013 2013-01-24 PMC N PMC3971121 23072311.0 10.1146/annurev-pathol-020712-163918 sp4n02xh 0.377171 Jang_2019, Choi_2020, Shi_J_2012, Kim_S_2018 Jacomin_2018, Rey-Jurado_2015, Espert_2007, Cheng_2014
643 Marsh_1989 Virus Entry into Animal Cells Marsh, Mark; Helenius, Ari 1989 1989-12-31 PMC N PMC7130955 2500008.0 10.1016/s0065-3527(08)60583-7 cdoa4az5 0.377171 Denison_2008, Berkhout_2006, Cheng_2014, Tessier_2019, Klein_2011 Villanueva_2005, Giorda_2013, Sze_C_2015
644 Vonderstein_2017 Viperin Targets Flavivirus Virulence by Inducing Assembly of Noninfectious Capsid Particles Vonderstein, Kirstin; Nilsson, Emma; Hubel, Philipp; Nygård Skalman, Larsård; Upadhyay, Arunkumar; Pasto, Jenny; Pichlmair, Andreas; Lundmark, Richard; Överby, Anna K. 2017 2017-12-14 COMM-USE N PMC5730767 29046456.0 10.1128/jvi.01751-17 ax55awv1 0.376664 Meyerson_2017, Ban_J_2018, Greene_2012, Trobaugh_2017, Yasuda-Inoue_2013 Chen_2019, Sidhu_1996, Jung_2019
645 Schlesinger_1993 Alphaviruses — vectors for the expression of heterologous genes Schlesinger, Sondra 1993 1993-01-31 PMC N 7764041.0 10.1016/0167-7799(93)90070-p 884d196k 0.376488 Rice_1992, den_Boon_2010, Trobaugh_2017, Ryu_W_2017, Payne_2017
646 Dawson_2017 RNA structure interactions and ribonucleoprotein processes of the influenza A virus Dawson, Wayne K; Lazniewski, Michal; Plewczynski, Dariusz 2017 2017-10-10 NONCOMM N PMC6252904 29040388.0 10.1093/bfgp/elx028 3opbf2cp 0.375743 Trobaugh_2017, den_Boon_2010, Volmer_2010, Rice_1992, Wu_B_2009 Sun_D_2016, Zhang_2015, Wulan_2015
647 Houzet_2011 MicroRNAs and human retroviruses Houzet, Laurent; Jeang, Kuan-Teh 2011 2011-12-31 None N PMC3177989 21640212.0 10.1016/j.bbagrm.2011.05.009 ncqw8fwr 0.375619 Trobaugh_2017, Rice_1992, Herbert_2016, Haasnoot_2010 Moens_2009, Case_2017
648 Imbert_2008 The SARS-Coronavirus PLnc domain of nsp3 as a replication/transcription scaffolding protein Imbert, Isabelle; Snijder, Eric J.; Dimitrova, Maria; Guillemot, Jean-Claude; Lécine, Patrick; Canard, Bruno 2008 2008-05-31 PMC N PMC7114086 18255185.0 10.1016/j.virusres.2007.11.017 cuu78cvl 0.375572 Rice_1992, Stork_2011, den_Boon_2010, Pong_2011, Yasuda-Inoue_2013 Kumar_2007
649 Jacomin_2017 iLIR@viral: A web resource for LIR motif-containing proteins in viruses Jacomin, Anne-Claire; Samavedam, Siva; Charles, Hannah; Nezis, Ioannis P. 2017 2017-08-14 COMM-USE N PMC5640201 28806134.0 10.1080/15548627.2017.1356978 b7mlt19n 0.375572 Berkhout_2006, Taschuk_2020, Klein_2011, Shi_J_2012, Lester_2014 Neufeldt_2016, Lin_L_2010, Deng_2019
650 Ávila-Pérez_2019 Activation of the autophagy pathway by Torovirus infection is irrelevant for virus replication Ávila-Pérez, Ginés; Diaz-Beneitez, Elisabet; Cubas-Gaona, Liliana L.; Nieves-Molina, Gliselle; Rodríguez, Juan Ramón; Rodríguez, José F.; Rodríguez, Dolores 2019 2019-07-15 COMM-USE N PMC6629058 31306441.0 10.1371/journal.pone.0219428 90r3w9q0 0.375413 Greene_2012, Ban_J_2018, Volmer_2010, Meyerson_2017, Sir_D_2008 Ding_2017
651 Mancone_2013 Applying proteomic technology to clinical virology Mancone, C.; Ciccosanti, F.; Montaldo, C.; Perdomo, A.B.; Piacentini, M.; Alonzi, T.; Fimia, G.M.; Tripodi, M. 2013 2013-01-31 PMC N PMC7129767 23034105.0 10.1111/1469-0691.12029 a4nzeroz 0.374279 Johnson_2018, UNKNOWN_2004, Tong_2011, Gupta_2009, Castrignano_2015 Zheng_2011, Lee_C_2019, Watanabe_2019, van_der_Linden_2014
652 Karjee_2008 Screening and Identification of Virus-Encoded RNA Silencing Suppressors Karjee, Sumona; Islam, Mohammad Nurul; Mukherjee, Sunil K. 2008 2008-01-01 PMC N PMC7120842 18369787.0 10.1007/978-1-59745-191-8_14 xz15s6nj 0.374279 Rice_1992, Berkhout_2006, Trobaugh_2017, Herbert_2016, Stork_2011 Haddad_2011, Rothe_2010, Garcia_2014
653 Davy_2007 G2/M cell cycle arrest in the life cycle of viruses Davy, Clare; Doorbar, John 2007 2007-11-25 PMC N PMC7103309 17675127.0 10.1016/j.virol.2007.05.043 siyc9g76 0.374020 Bagga_2014, Berkhout_2006, Trobaugh_2017, Klein_2011 Bagga_2014, Li_F_2007, Ding_2013
654 Lin_Y_2017 The host ubiquitin-dependent segregase VCP/p97 is required for the onset of human cytomegalovirus replication Lin, Yao-Tang; Prendergast, James; Grey, Finn 2017 2017-05-11 COMM-USE N PMC5426786 28494016.0 10.1371/journal.ppat.1006329 ao7kenbx 0.373384 Trobaugh_2017, Ban_J_2018, Meyerson_2017, Yasuda-Inoue_2013, Haasnoot_2010 Yan_J_2020, Phongphaew_2017
655 Marzook_2017 Divergent roles of β‐ and γ‐actin isoforms during spread of vaccinia virus Marzook, N. Bishara; Latham, Sharissa L.; Lynn, Helena; Mckenzie, Christopher; Chaponnier, Christine; Grau, Georges E.; Newsome, Timothy P. 2017 2017-03-17 PMC N PMC7162416 28218453.0 10.1002/cm.21356 i45wly4s 0.372971 Volmer_2010, Greene_2012, Jonker_2018, Mu_J_2016, Ploubidou_2000
656 Chutiwitoonchai_2017 Inhibition of CRM1-mediated nuclear export of influenza A nucleoprotein and nuclear export protein as a novel target for antiviral drug development Chutiwitoonchai, Nopporn; Mano, Takafumi; Kakisaka, Michinori; Sato, Hirotaka; Kondoh, Yasumitsu; Osada, Hiroyuki; Kotani, Osamu; Yokoyama, Masaru; Sato, Hironori; Aida, Yoko 2017 2017-07-31 PMC N PMC7111614 28399435.0 10.1016/j.virol.2017.04.001 ilf4nftp 0.371992 Volmer_2010, Yasuda-Inoue_2013, Ban_J_2018, Blank_2017, Meyerson_2017 Lin_M_2012
657 Alonso_2013 African swine fever virus-cell interactions: From virus entry to cell survival Alonso, Covadonga; Galindo, Inmaculada; Cuesta-Geijo, Miguel Angel; Cabezas, Marta; Hernaez, Bruno; Muñoz-Moreno, Raquel 2013 2013-04-30 PMC N PMC7114420 23262167.0 10.1016/j.virusres.2012.12.006 elu8nvrv 0.370544 Greene_2012, Weissenhorn_2013, Trobaugh_2017, Shi_J_2012, Mao_J_2019 Krzyzaniak_2013, Fulcher_2011, Neufeldt_2016
658 Mazeaud_2018 The Multiples Fates of the Flavivirus RNA Genome During Pathogenesis Mazeaud, Clément; Freppel, Wesley; Chatel-Chaix, Laurent 2018 2018-12-04 COMM-USE N PMC6288177 30564270.0 10.3389/fgene.2018.00595 saljl8sv 0.370492 Rice_1992, den_Boon_2010, Stork_2011, Trobaugh_2017, Yasuda-Inoue_2013 Sun_D_2016, Case_2017, Enjuanes_2008
659 Lin_L_2010 Viral interactions with macroautophagy: A double-edged sword Lin, Liang-Tzung; Dawson, Paul W.H.; Richardson, Christopher D. 2010 2010-06-20 PMC N PMC7111941 20413139.0 10.1016/j.virol.2010.03.026 x27crdjj 0.369505 Lester_2014, Kim_S_2018, Mao_J_2019, Shi_J_2012, Rajsbaum_2013 Espert_2007, Huang_2019
660 Almsherqi_2010 Chapter Four The Cubic “Faces” of Biomembranes Almsherqi, Zakaria A.; Margadant, Felix; Deng, Yuru 2010 2010-12-31 PMC N PMC7149561 10.1016/b978-0-12-381266-7.00004-3 l3qursyw 0.369197 Cosson_2013, Hurley_2014, Ruiz-Herrero_2015, Munro_1998, Weissenhorn_2013 Almsherqi_2009, Snead_2019
661 Zhang_2014 EF1A interacting with nucleocapsid protein of transmissible gastroenteritis coronavirus and plays a role in virus replication Zhang, Xin; Shi, Hongyan; Chen, Jianfei; Shi, Da; Li, Changlong; Feng, Li 2014 2014-08-27 PMC N PMC7117464 24974120.0 10.1016/j.vetmic.2014.05.034 lrzshhjd 0.369197 Meyerson_2017, Li_C_2013, Li_C_2014, Ban_J_2018, Kang_2009 Zhang_2015, Hsieh_2013, Case_2017
662 Leroy_2016 Structural Proteomics of Herpesviruses Leroy, Baptiste; Gillet, Laurent; Vanderplasschen, Alain; Wattiez, Ruddy 2016 2016-02-12 COMM-USE N PMC4776205 26907323.0 10.3390/v8020050 fuotxqab 0.368938 UNKNOWN_2004, Johnson_2018, Castrignano_2015, Cullen_2009, Conzelmann_1996 Kumar_2015, Vigerust_2011, Zhang_2015, Watanabe_2019
663 Gastaldello_2013 Caspase-1 Promotes Epstein-Barr Virus Replication by Targeting the Large Tegument Protein Deneddylase to the Nucleus of Productively Infected Cells Gastaldello, Stefano; Chen, Xinsong; Callegari, Simone; Masucci, Maria G. 2013 2013-10-10 COMM-USE N PMC3795028 24130483.0 10.1371/journal.ppat.1003664 5a8au32c 0.368938 Meyerson_2017, Greene_2012, Ban_J_2018, Yasuda-Inoue_2013, Blank_2017 Xin_S_2019
664 Hussain_2010 SARS-coronavirus protein 6 conformations required to impede protein import into the nucleus Hussain, Snawar; Gallagher, Tom 2010 2010-11-30 None N PMC2954772 20800627.0 10.1016/j.virusres.2010.08.017 wm27coad 0.368481 Volmer_2010, UNKNOWN_1993, UNKNOWN_1987, UNKNOWN_1993, Greene_2012 Chen_2009, Voß_D_2009, Zhang_2015
665 Han_H_2010 Cross-talking between autophagy and viral infection in mammalian cells Han, Hongya; Zhang, Lishu; Dai, Xinxian; Zheng, Yanpeng 2010 2010-12-11 PMC N PMC7089097 10.1007/s11515-010-0760-8 ea0pgm9z 0.367513 Lester_2014, Mao_J_2019, Shi_J_2012, Viswanathan_2010, Kim_S_2018 Espert_2007, Shoji-Kawata_2009, Lin_L_2010
666 Walker_2011 Rhabdovirus accessory genes Walker, Peter J.; Dietzgen, Ralf G.; Joubert, D. Albert; Blasdell, Kim R. 2011 2011-12-31 PMC N PMC7114375 21933691.0 10.1016/j.virusres.2011.09.004 goidlh08 0.367513 Taschuk_2020, Wang_2018, Berkhout_2006, Haasnoot_2010, Trobaugh_2017 Sun_D_2016, Goldberg_1991, Enjuanes_2008
667 Mingorance_2018 Host phosphatidic acid phosphatase lipin1 is rate limiting for functional hepatitis C virus replicase complex formation Mingorance, Lidia; Castro, Victoria; Ávila-Pérez, Ginés; Calvo, Gema; Rodriguez, María Josefa; Carrascosa, José L.; Pérez-del-Pulgar, Sofía; Forns, Xavier; Gastaminza, Pablo 2018 2018-09-18 COMM-USE N PMC6161900 30226904.0 10.1371/journal.ppat.1007284 u46xryoo 0.367461 Trobaugh_2017, Kang_2009, Berkhout_2006, Haasnoot_2010, Greene_2012 Saleh_2018, Neufeldt_2016
668 Krieger_2014 Reorganization of the Endosomal System in Salmonella-Infected Cells: The Ultrastructure of Salmonella-Induced Tubular Compartments Krieger, Viktoria; Liebl, David; Zhang, Yuying; Rajashekar, Roopa; Chlanda, Petr; Giesker, Katrin; Chikkaballi, Deepak; Hensel, Michael 2014 2014-09-25 COMM-USE N PMC4177991 25254663.0 10.1371/journal.ppat.1004374 tk4dmey5 0.366861 Hurley_2014, UNKNOWN_1995, Jonker_2018, Weissenhorn_2013, Wang_2013 Salcedo_2003, UNKNOWN_1995
669 Monahan_2016 Stress granules at the intersection of autophagy and ALS Monahan, Zachary; Shewmaker, Frank; Pandey, Udai Bhan 2016 2016-10-01 PMC N PMC5055418 27181519.0 10.1016/j.brainres.2016.05.022 zbxx3k0f 0.366861 Hurley_2014, Dubois_2016, Stoecklin_2012, Emmott_2009, Haasnoot_2010 Aulas_2015, Gispert_2013, Kovalchuke_2018
670 Krishna_2005 Identification of Structural Domains Involved in Astrovirus Capsid Biology Krishna, Neel K. 2005 2005-03-01 PMC N PMC1393289 15802951.0 10.1089/vim.2005.18.17 cdw6hvyx 0.366332 den_Boon_2010, Rice_1992, Trobaugh_2017, Stork_2011, Taschuk_2020 Zhang_2015, Sokoloski_2017
671 Kaján_2019 Virus–Host Coevolution with a Focus on Animal and Human DNA Viruses Kaján, Győző L.; Doszpoly, Andor; Tarján, Zoltán László; Vidovszky, Márton Z.; Papp, Tibor 2019 2019-10-10 COMM-USE N PMC6943099 31599342.0 10.1007/s00239-019-09913-4 33fs6exl 0.365659 Denison_2008, den_Boon_2010, Wang_2018, Rivas_2016, Fauci_2006 Rodríguez_2020, Webby_2004, Koonin_2013
672 FENNER_1987 CHAPTER 4 Viral Replication FENNER, FRANK; BACHMANN, PETER A.; GIBBS, E. PAUL J.; MURPHY, FREDERICK A.; STUDDERT, MICHAEL J.; WHITE, DAVID O. 1987 1987-12-31 PMC N 10.1016/b978-0-12-253055-5.50008-6 3q9yr6np 0.365035 Trobaugh_2017, Rice_1992, Berkhout_2006, den_Boon_2010, Haasnoot_2010
673 Dupzyk_2016 How Polyomaviruses Exploit the ERAD Machinery to Cause Infection Dupzyk, Allison; Tsai, Billy 2016 2016-08-29 COMM-USE N PMC5035956 27589785.0 10.3390/v8090242 tp6sd8r1 0.364398 Weissenhorn_2013, UNKNOWN_1995, Hurley_2014, Greene_2012 Neufeldt_2016, Watanabe_2019
674 Harwig_2017 The Battle of RNA Synthesis: Virus versus Host Harwig, Alex; Landick, Robert; Berkhout, Ben 2017 2017-10-21 COMM-USE N PMC5691660 29065472.0 10.3390/v9100309 4pf5nsw2 0.364398 Trobaugh_2017, Berkhout_2006, Haasnoot_2010, Abernathy_2015, Herbert_2016 Gaucherand_2019
675 Wodrich_2010 A Capsid-Encoded PPxY-Motif Facilitates Adenovirus Entry Wodrich, Harald; Henaff, Daniel; Jammart, Baptist; Segura-Morales, Carolina; Seelmeir, Sigrid; Coux, Olivier; Ruzsics, Zsolt; Wiethoff, Christopher M.; Kremer, Eric J. 2010 2010-03-19 COMM-USE N PMC2841620 20333243.0 10.1371/journal.ppat.1000808 1mjmttec 0.364229 Greene_2012, Ban_J_2018, Meyerson_2017, Yasuda-Inoue_2013
676 Hyatt_1990 Virological applications of the grid-cell-culture technique Hyatt, Alex D.; Eaton, Bryan T. 1990 1990-12-31 PMC N 1966471.0 10.1016/0892-0354(90)90011-g qwgde9uu 0.364170 Rice_1992, den_Boon_2010, Volmer_2010, Denison_2008, Trobaugh_2017
677 Müller_2019 A Spotlight on Viruses—Application of Click Chemistry to Visualize Virus-Cell Interactions Müller, Thorsten G.; Sakin, Volkan; Müller, Barbara 2019 2019-01-29 COMM-USE N PMC6385038 30700005.0 10.3390/molecules24030481 gq6k0f3q 0.364121 Conzelmann_1996, Berkhout_2006, Trobaugh_2017, Cullen_2009, UNKNOWN_2004 Bray_2010, Walker_2016, Giorda_2013, Sewald_2018
678 Han_L_2017 Human enterovirus 71 protein interaction network prompts antiviral drug repositioning Han, Lu; Li, Kang; Jin, Chaozhi; Wang, Jian; Li, Qingjun; Zhang, Qiling; Cheng, Qiyue; Yang, Jing; Bo, Xiaochen; Wang, Shengqi 2017 2017-02-21 COMM-USE N PMC5318855 28220872.0 10.1038/srep43143 f59c4idd 0.364046 Berkhout_2006, Trobaugh_2017, Haasnoot_2010, Shi_J_2012, Wilson_2012 Li_Z_2019, Zhang_2015, Yao_C_2018
679 Järvelin_2016 The new (dis)order in RNA regulation Järvelin, Aino I.; Noerenberg, Marko; Davis, Ilan; Castello, Alfredo 2016 2016-04-06 COMM-USE N PMC4822317 27048167.0 10.1186/s12964-016-0132-3 vhsipxs7 0.364046 Trobaugh_2017, Ivarsson_2012, Taschuk_2020, Haasnoot_2010, Dubois_2016 Xia_H_2015, White_2015, Choudhury_2017
680 Hyde_2015 Innate immune restriction and antagonism of viral RNA lacking 2׳-O methylation Hyde, Jennifer L.; Diamond, Michael S. 2015 2015-05-31 PMC N PMC4424151 25682435.0 10.1016/j.virol.2015.01.019 sa3fms13 0.363350 Yasuda-Inoue_2013, Trobaugh_2017, Meyerson_2017, Herbert_2016, Stork_2011 Daffis_2010, Habjan_2013
681 Dai_X_2020 Orchestrated efforts on host network hijacking: Processes governing virus replication Dai, Xiaofeng; Hakizimana, Olivier; Zhang, Xuanhao; Kaushik, Aman Chandra; Zhang, Jianying 2020 2020-02-12 COMM-USE N PMC7051146 32050846.0 10.1080/21505594.2020.1726594 1dc46btc 0.362743 Mao_J_2019, Kim_S_2018, Lester_2014, Berkhout_2006, Shi_J_2012 Galluzzi_2008, Lin_L_2010, Bagga_2014
682 Saul_2019 ULK1/2 Restricts the Formation of Inducible SINT-Speckles, Membraneless Organelles Controlling the Threshold of TBK1 Activation Saul, Vera Vivian; Seibert, Markus; Krüger, Marcus; Jeratsch, Sylvia; Kracht, Michael; Schmitz, Michael Lienhard 2019 2019-08-06 None N PMC6710720 31442668.0 10.1016/j.isci.2019.08.001 5xk3z4ck 0.362462 Greene_2012, Siu_Y_2008, Blank_2017, Kumar_2016, Ban_J_2018 Fitzgerald_2013
683 Tanida_2004 LC3 conjugation system in mammalian autophagy Tanida, Isei; Ueno, Takashi; Kominami, Eiki 2004 2004-12-31 PMC N PMC7129593 15325588.0 10.1016/j.biocel.2004.05.009 u5nl86o7 0.362227 Hurley_2014, Greene_2012, Jonker_2018, Pridgeon_2008, UNKNOWN_1995 Ávila-Pérez_2019, Ding_2017
684 Xue_Q_2019 The DEAD-Box RNA Helicase DDX1 Interacts with the Viral Protein 3D and Inhibits Foot-and-Mouth Disease Virus Replication Xue, Qiao; Liu, Huisheng; Zeng, Qiaoying; Zheng, Haixue; Xue, Qinghong; Cai, Xuepeng 2019 2019-07-29 PMC N PMC6888807 31359346.0 10.1007/s12250-019-00148-7 9pw9191b 0.361989 Li_C_2013, Yasuda-Inoue_2013, Meyerson_2017, Li_C_2014, Ban_J_2018 Li_C_2013, Yasuda-Inoue_2013
685 Katze_2008 Innate immune modulation by RNA viruses: emerging insights from functional genomics Katze, Michael G.; Fornek, Jamie L.; Palermo, Robert E.; Walters, Kathie-Anne; Korth, Marcus J. 2008 2008-01-01 PMC N PMC7097543 18654572.0 10.1038/nri2377 85wj08gr 0.361924 Lester_2014, Kindler_2014, Kim_S_2018, Mao_J_2019, Berkhout_2006 Rajsbaum_2013, Schlee_2013
686 Davies_2016 Expression of the NS5 (VPg) Protein of Murine Norovirus Induces a G1/S Phase Arrest Davies, Colin; Ward, Vernon K. 2016 2016-08-24 COMM-USE N PMC4996510 27556406.0 10.1371/journal.pone.0161582 gsdk5x3e 0.361836 Meyerson_2017, Volmer_2010, Kang_2009, Trobaugh_2017, Harrison_2007 Yan_J_2020
687 Campos_2017 Subcellular Trafficking of the Papillomavirus Genome during Initial Infection: The Remarkable Abilities of Minor Capsid Protein L2 Campos, Samuel K. 2017 2017-12-03 COMM-USE N PMC5744145 29207511.0 10.3390/v9120370 84np9brx 0.359722 Trobaugh_2017, Weissenhorn_2013, Tessier_2019, Berkhout_2006, den_Boon_2010 Walker_2016, Fulcher_2011
688 García-Nicolás_2018 The Small-Compound Inhibitor K22 Displays Broad Antiviral Activity against Different Members of the Family Flaviviridae and Offers Potential as a Panviral Inhibitor García-Nicolás, Obdulio; V'kovski, Philip; Vielle, Nathalie J.; Ebert, Nadine; Züst, Roland; Portmann, Jasmine; Stalder, Hanspeter; Gaschen, Véronique; Vieyres, Gabrielle; Stoffel, Michael; Schweizer, Matthias; Summerfield, Artur; Engler, Olivier; Pietschmann, Thomas; Todt, Daniel; Alves, Marco P.; Thiel, Volker; Pfaender, Stephanie 2018 2018-10-24 COMM-USE N PMC6201103 30181371.0 10.1128/aac.01206-18 wcdg5d54 0.358857 Rice_1992, Ryu_W_2017, Meyerson_2017, den_Boon_2010, Li_C_2014 Krumm_2011, Zhu_X_2015, Xiong_2020, Rappe_2018
689 Shaw_2011 The Host Interactome of Influenza Virus Presents New Potential Targets for Antiviral Drugs Shaw, Megan L. 2011 2011-08-08 None N PMC3207218 21823192.0 10.1002/rmv.703 c732txfd 0.358197 Berkhout_2006, Haasnoot_2010, Trobaugh_2017, Kindler_2014 Lin_K_2013, Vardanyan_2016
690 Gupta_2019 RNA-mediated translation regulation in viral genomes: computational advances in the recognition of sequences and structures Gupta, Asmita; Bansal, Manju 2019 2019-06-17 PMC N PMC7109810 31204430.0 10.1093/bib/bbz054 1u96c10x 0.358197 Trobaugh_2017, Staple_2005, Dubois_2016, den_Boon_2010, Martínez-Salas_2008 Masante_2015
691 Oudshoorn_2017 Expression and Cleavage of Middle East Respiratory Syndrome Coronavirus nsp3-4 Polyprotein Induce the Formation of Double-Membrane Vesicles That Mimic Those Associated with Coronaviral RNA Replication Oudshoorn, Diede; Rijs, Kevin; Limpens, Ronald W. A. L.; Groen, Kevin; Koster, Abraham J.; Snijder, Eric J.; Kikkert, Marjolein; Bárcena, Montserrat 2017 2017-11-21 COMM-USE N PMC5698553 29162711.0 10.1128/mbio.01658-17 upcf15q5 0.357867 Pong_2011, Yasuda-Inoue_2013, Stork_2011, Li_C_2013, den_Boon_2010 Thornbrough_2016, Kanjanahaluethai_2007
692 Calvo_2012 Severe acute respiratory syndrome coronavirus accessory proteins 6 and 9b interact in vivo Calvo, Enrique; DeDiego, Marta L.; García, Pilar; López, Juan A.; Pérez-Breña, Pilar; Falcón, Ana 2012 2012-10-31 PMC N PMC7114373 22820404.0 10.1016/j.virusres.2012.07.012 bomn9bvt 0.357737 Shen_2005, Volmer_2010, Rice_1992, Kang_2009, Li_C_2013 Kumar_2007, Thornbrough_2016, Xu_K_2009, Wang_2009
693 Rodriguez_2018 C19ORF66 broadly escapes viral-induced endonuclease cleavage and restricts Kaposi’s Sarcoma Associated Herpesvirus (KSHV) William Rodriguez; Aman Srivastav; Mandy Muller 2018 2018-12-26 BioRxiv N 10.1101/506410 5a4i8v59 0.357663 Trobaugh_2017, Haasnoot_2010, Berkhout_2006, Rice_1992, Herbert_2016 Mendez_2018, Case_2017
694 Raniga_2018 Interferons: Reprogramming the Metabolic Network against Viral Infection Raniga, Kavita; Liang, Chen 2018 2018-01-13 COMM-USE N PMC5795449 29342871.0 10.3390/v10010036 9cpgd8sc 0.357605 Lester_2014, Dixit_2013, Herbert_2016, Trobaugh_2017, Mao_J_2019 Lercher_2019, Carrero_2013, Chemudupati_2019, Keshavarz_2020
695 Ward_2012 Host Modulators of H1N1 Cytopathogenicity Ward, Samuel E.; Kim, Hyun Seok; Komurov, Kakajan; Mendiratta, Saurabh; Tsai, Pei-Ling; Schmolke, Mirco; Satterly, Neal; Manicassamy, Balaji; Forst, Christian V.; Roth, Michael G.; García-Sastre, Adolfo; Blazewska, Katarzyna M.; McKenna, Charles E.; Fontoura, Beatriz M.; White, Michael A. 2012 2012-08-02 COMM-USE N PMC3410888 22876275.0 10.1371/journal.pone.0039284 bqount8a 0.357559 Lu_P_2016, Yasui_2016, Berkhout_2006, Rice_1992, Trobaugh_2017 Valle-Casuso_2020, A_Abdullah_2018
696 Wang_2014 Switch from Cap- to Factorless IRES-Dependent 0 and +1 Frame Translation during Cellular Stress and Dicistrovirus Infection Wang, Qing S.; Jan, Eric 2014 2014-08-04 COMM-USE N PMC4121135 25089704.0 10.1371/journal.pone.0103601 0if5z3xp 0.357040 Landry_2009, Lamb_1991, Gendron_2010, Ivanova_2015 Sasvari_2011, Landry_2009, Powell_2011
697 Patil_2020 TRIM41-Mediated Ubiquitination of Nucleoprotein Limits Vesicular Stomatitis Virus Infection Patil, Girish; Xu, Lingling; Wu, Yakun; Song, Kun; Hao, Wenzhuo; Hua, Fang; Wang, Lingyan; Li, Shitao 2020 2020-01-22 COMM-USE N PMC7077221 31979016.0 10.3390/v12020131 jlib9v5j 0.355852 Meyerson_2017, Ban_J_2018, Greene_2012, Yasuda-Inoue_2013, Tallmadge_2008 Case_2017, van_Tol_2017
698 Masaki_2015 miR-122 Stimulates Hepatitis C Virus RNA Synthesis by Altering the Balance of Viral RNAs Engaged in Replication versus Translation Masaki, Takahiro; Arend, Kyle C.; Li, You; Yamane, Daisuke; McGivern, David R.; Kato, Takanobu; Wakita, Takaji; Moorman, Nathaniel J.; Lemon, Stanley M. 2015 2015-02-11 None N PMC4326553 25662750.0 10.1016/j.chom.2014.12.014 pmdera3v 0.354787 Yasuda-Inoue_2013, Stork_2011, Liu_H_2009, Meyerson_2017 Masante_2015, Bhullar_2014, Liu_H_2009
699 Xiang_2020 VPTMdb: a viral post-translational modification database Yujia Xiang; Quan Zou; Lilin Zhao 2020 2020-04-02 BioRxiv N 10.1101/2020.04.01.019562 kl99afiu 0.354121 Brister_2015, Cheng_2013, Wang_2006, Lee_C_2017 Wimmer_2015
700 Timmins_2004 Structural studies on the Ebola virus matrix protein VP40 indicate that matrix proteins of enveloped RNA viruses are analogues but not homologues Timmins, Joanna; Ruigrok, Rob W.H.; Weissenhorn, Winfried 2004 2004-04-15 PMC N PMC7127519 15108720.0 10.1016/j.femsle.2004.03.002 etin5i7y 0.353623 den_Boon_2010, Timmins_2004, Weissenhorn_2013, Rice_1992 Timmins_2004, Zhang_2015
701 Bailey-Elkin_2017 Structure and Function of Viral Deubiquitinating Enzymes Bailey-Elkin, Ben A.; Knaap, Robert C.M.; Kikkert, Marjolein; Mark, Brian L. 2017 2017-11-10 PMC N PMC7094624 28625850.0 10.1016/j.jmb.2017.06.010 4v41s3wi 0.353509 Viswanathan_2010, Lester_2014, Rajsbaum_2013, Kim_S_2018 Wimmer_2015, Deng_2019, van_Tol_2017, Watanabe_2019
702 Navratil_2008 VirHostNet: a knowledge base for the management and the analysis of proteome-wide virus–host interaction networks Navratil, Vincent; de Chassey, Benoît; Meyniel, Laurène; Delmotte, Stéphane; Gautier, Christian; André, Patrice; Lotteau, Vincent; Rabourdin-Combe, Chantal 2008 2008-11-04 NONCOMM N PMC2686459 18984613.0 10.1093/nar/gkn794 x5lbstyr 0.352934 Gupta_2009, Alcami_2000, Alcami_2000, Alcami_2000, Brister_2015 Durmuş_2017, Goodacre_2020, Brass_2009, Han_L_2017
703 Qin_P_2019 Characteristics of the Life Cycle of Porcine Deltacoronavirus (PDCoV) In Vitro: Replication Kinetics, Cellular Ultrastructure and Virion Morphology, and Evidence of Inducing Autophagy Qin, Pan; Du, En-Zhong; Luo, Wen-Ting; Yang, Yong-Le; Zhang, Yu-Qi; Wang, Bin; Huang, Yao-Wei 2019 2019-05-18 COMM-USE N PMC6563515 31109068.0 10.3390/v11050455 eo4le4v3 0.352932 Volmer_2010, den_Boon_2010, Quiner_2010, Terrier_2016, Greene_2012 Sun_D_2016, Ding_2017, Hsieh_2013
704 Moens_2009 Silencing Viral MicroRNA as a Novel Antiviral Therapy? Moens, Ugo 2009 2009-05-28 PMC N PMC2688686 19704916.0 10.1155/2009/419539 de7v4e5s 0.352930 Rice_1992, Trobaugh_2017, Herbert_2016, Berkhout_2006 TAN_F_2004, Chemudupati_2019, Haddad_2011
705 Habjan_2015 Cytoplasmic sensing of viral nucleic acids Habjan, Matthias; Pichlmair, Andreas 2015 2015-04-30 PMC N 25668758.0 10.1016/j.coviro.2015.01.012 p1q3v1ie 0.352284 Lester_2014, Lee_H_2019, Taschuk_2020, Trobaugh_2017, Dixit_2013
706 Gopinath_2015 Evidence for N(7) guanine methyl transferase activity encoded within the modular domain of RNA-dependent RNA polymerase L of a Morbillivirus Gopinath, M.; Shaila, M. S. 2015 2015-10-07 PMC N PMC7088885 26446666.0 10.1007/s11262-015-1252-3 bww62vx8 0.352133 Stork_2011, Yasuda-Inoue_2013, Meyerson_2017, Pong_2011 Okamoto_2008
707 Boya_2013 Emerging regulation and functions of autophagy Boya, Patricia; Reggiori, Fulvio; Codogno, Patrice 2013 2013-07-01 PMC N PMC7097732 23817233.0 10.1038/ncb2788 z1i673yy 0.350962 Hurley_2014, Jang_2019, Shi_J_2012, Kim_S_2018 Subramani_2013, Randow_2012, Subauste_2009, Jacomin_2018
708 Ren_J_2013 Picornavirus uncoating intermediate captured in atomic detail Ren, Jingshan; Wang, Xiangxi; Hu, Zhongyu; Gao, Qiang; Sun, Yao; Li, Xuemei; Porta, Claudine; Walter, Thomas S.; Gilbert, Robert J.; Zhao, Yuguang; Axford, Danny; Williams, Mark; McAuley, Katherine; Rowlands, David J.; Yin, Weidong; Wang, Junzhi; Stuart, David I.; Rao, Zihe; Fry, Elizabeth E. 2013 2013-06-03 None N PMC3709478 23728514.0 10.1038/ncomms2889 f1frcjp3 0.350722 den_Boon_2010, Weissenhorn_2013, Volmer_2010, Rice_1992, Terrier_2016 Sun_D_2016
709 Bailer_2009 Connecting viral with cellular interactomes Bailer, SM; Haas, J 2009 2009-08-31 PMC N PMC7108267 19632888.0 10.1016/j.mib.2009.06.004 w4z5avld 0.350122 Johnson_2018, UNKNOWN_2004, Sen_D_2018, Hu_S_2010 Zhang_2015, Yang_2014
710 Connor_2007 Unique SARS-CoV protein nsp1: bioinformatics, biochemistry and potential effects on virulence Connor, Ramsey F.; Roper, Rachel L. 2007 2007-02-28 PMC N PMC7127589 17207625.0 10.1016/j.tim.2006.12.005 sq9hh50d 0.350122 Lu_P_2016, Rice_1992, Ryu_W_2017, Tallmadge_2008, Potgieter_1986 Narayanan_2015, Niemeyer_2018, Graham_2008, Bartlam_2005
711 Clementz_2008 Mutation in murine coronavirus replication protein nsp4 alters assembly of double membrane vesicles Clementz, Mark A.; Kanjanahaluethai, Amornrat; O'Brien, Timothy E.; Baker, Susan C. 2008 2008-05-25 PMC N PMC2443636 18295294.0 10.1016/j.virol.2008.01.018 jwflooop 0.349601 Pong_2011, Stork_2011, Volmer_2010, Meyerson_2017, Kang_2009 Kanjanahaluethai_2007, Papa_2019
712 Neidermyer_2019 Global analysis of polysome-associated mRNA in vesicular stomatitis virus infected cells Neidermyer, William J.; Whelan, Sean P. J. 2019 2019-06-21 COMM-USE N PMC6608984 31226162.0 10.1371/journal.ppat.1007875 jld1ygxt 0.349258 Trobaugh_2017, Masaki_2015, Rice_1992, Stork_2011, Herbert_2016 Bhullar_2014, Wulan_2015, Brunner_2010
713 Happy_Miller_2012 Filovirus Entry into Cells – New Insights Happy Miller, Emily; Chandran, Kartik 2012 2012-04-01 PMC N PMC3322298 22445965.0 10.1016/j.coviro.2012.02.015 6apdckyv 0.348962 Weissenhorn_2013, Greene_2012, den_Boon_2010, Compton_2014, Hobman_1993 Regan_2013, Hofmann-Winkler_2012, Krzyzaniak_2013, Wang_2016
714 Chavez-Calvillo_2018 The Structure-To-Function Relationships of Gammaherpesvirus-Encoded Long Non-Coding RNAs and Their Contributions to Viral Pathogenesis Chavez-Calvillo, Gabriela; Martin, Sarah; Hamm, Chad; Sztuba-Solinska, Joanna 2018 2018-09-26 COMM-USE N PMC6315926 30261651.0 10.3390/ncrna4040024 ebcj0hw1 0.348921 Trobaugh_2017, Haasnoot_2010, Herbert_2016, Taschuk_2020, Li_Z_2011 Trypsteen_2016, Sun_D_2016, Masante_2015
715 Kim_Y_2015 Extracellular signal-regulated kinase (ERK) activation is required for porcine epidemic diarrhea virus replication Kim, Youngnam; Lee, Changhee 2015 2015-10-31 PMC N PMC7111633 26115165.0 10.1016/j.virol.2015.06.007 db7eeajm 0.348729 Kumar_2016, Mitomo_2016, Ban_J_2018, Mizutani_2004 Wei_L_2009, Mitomo_2016
716 Spencer_2008 Role of phosphorylation clusters in the biology of the coronavirus infectious bronchitis virus nucleocapsid protein Spencer, Kelly-Anne; Dee, Michael; Britton, Paul; Hiscox, Julian A. 2008 2008-01-20 PMC N PMC7103301 17931676.0 10.1016/j.virol.2007.08.016 wovftw3l 0.348661 Meyerson_2017, Pong_2011, Rice_1992, Kang_2009 Zhang_2015, Bhat_2011
717 Rodríguez_2020 Chapter 3 Viral Emerging Pathogen Evolution Rodríguez, Virginia; Lagares, Alfredo; Arteaga, Heiser; Mattar, Salim; Ruiz, Luis Carlos 2020 2020-12-31 PMC N PMC7149897 10.1016/b978-0-12-819400-3.00003-x f3g3ek5u 0.348575 Fauci_2006, Wang_2018, Denison_2008, Rivas_2016, Berkhout_2006 Webby_2004, Galluzzi_2008, Koonin_2013
718 Samuel_1989 Polycistronic Animal Virus mRNAs Samuel, Charles E. 1989 1989-12-31 PMC N 2505328.0 10.1016/s0079-6603(08)60697-2 65hqvwg9 0.348327 Lamb_1991, Rice_1992, Payne_2017, den_Boon_2010, Auewarakul_2005 Tzeng_2006, Wulan_2015
719 Ojosnegros_2011 Quasispecies as a matter of fact: Viruses and beyond Ojosnegros, Samuel; Perales, Celia; Mas, Antonio; Domingo, Esteban 2011 2011-12-31 PMC N 21945638.0 10.1016/j.virusres.2011.09.018 gi56zndh 0.348021 Trobaugh_2017, Wang_2018, den_Boon_2010, Denison_2008, Berkhout_2006
720 Kellokumpu_2015 Glycosyltransferase complexes in eukaryotes: long-known, prevalent but still unrecognized Kellokumpu, Sakari; Hassinen, Antti; Glumoff, Tuomo 2015 2015-10-17 PMC N PMC7079781 26474840.0 10.1007/s00018-015-2066-0 xsuialnn 0.347526 Rytkönen_2007, UNKNOWN_2004, Denison_2008, Emmott_2009, Dubois_2016 McDowell_1988, Langereis_2015, Voß_D_2009, Vigerust_2011
721 Alcami_2016 Viral Anticytokine Strategies Alcami, Antonio 2016 2016-12-31 PMC N PMC7152433 10.1016/b978-0-12-374279-7.10018-9 s6xmrgll 0.347433 Lester_2014, Dixit_2013, Viswanathan_2010, Rajsbaum_2013 Anand_2019, A_Abdullah_2018, Phares_2013
722 Li_T_2013 Traditional Chinese herbal medicine as a source of molecules with antiviral activity Li, Ting; Peng, Tao 2013 2013-01-31 PMC N PMC7114103 23153834.0 10.1016/j.antiviral.2012.10.006 vvjdzf29 0.347433 UNKNOWN_2004, Johnson_2018, Tong_2011, Wiwanitkit_2018, Guery_2014 Lee_C_2020, Eng_Y_2019, Chattopadhyay_2015, Bekut_2018
723 Galán_2009 Host cell proteins interacting with the 3′ end of TGEV coronavirus genome influence virus replication Galán, Carmen; Sola, Isabel; Nogales, Aitor; Thomas, Benjamin; Akoulitchev, Alexandre; Enjuanes, Luis; Almazán, Fernando 2009 2009-09-01 PMC N PMC7118768 19580983.0 10.1016/j.virol.2009.06.006 6ghod65y 0.347397 Yasuda-Inoue_2013, Stork_2011, Meyerson_2017, Pong_2011, Kang_2009 Tzeng_2006, Bhullar_2014
724 Chan_2016 Long-range communication between different functional sites in the picornaviral 3C protein Chan, Yan M.; Moustafa, Ibrahim M.; Arnold, Jamie J.; Cameron, Craig E.; Boehr, David D. 2016 2016-04-01 PMC N PMC4824962 27050688.0 10.1016/j.str.2016.02.019 4ef635rc 0.347104 Stork_2011, Trobaugh_2017, Blank_2017, Pong_2011 Sun_D_2016, Shengjuler_2017, van_der_Linden_2014, Myllykoski_2017
725 van_der_Schaar_2016 Illuminating the Sites of Enterovirus Replication in Living Cells by Using a Split-GFP-Tagged Viral Protein van der Schaar, H. M.; Melia, C. E.; van Bruggen, J. A. C.; Strating, J. R. P. M.; van Geenen, M. E. D.; Koster, A. J.; Bárcena, M.; van Kuppeveld, F. J. M. 2016 2016-07-06 COMM-USE N PMC4935779 27390781.0 10.1128/msphere.00104-16 1aptufp6 0.347076 Volmer_2010, Rice_1992, den_Boon_2010, Stork_2011, Shen_2005 Tzeng_2006, Wulan_2015
726 Abbas_2015 The eEF1A Proteins: At the Crossroads of Oncogenesis, Apoptosis, and Viral Infections Abbas, Wasim; Kumar, Amit; Herbein, Georges 2015 2015-04-07 COMM-USE N PMC4387925 25905039.0 10.3389/fonc.2015.00075 rstvf3mc 0.346909 Blank_2017, Greene_2012, Yasuda-Inoue_2013, Martín-Vicente_2017 Yan_J_2020, Zhang_2015, Ding_2014
727 Arcangeletti_2009 Modulatory effect of rRNA synthesis and ppUL83 nucleolar compartmentalization on human cytomegalovirus gene expression in vitro Arcangeletti, Maria‐Cristina; Rodighiero, Isabella; De Conto, Flora; Gatti, Rita; Orlandini, Guido; Ferraglia, Francesca; Motta, Federica; Covan, Silvia; Razin, Sergey V.; Dettori, Giuseppe; Chezzi, Carlo 2009 2009-07-07 PMC N PMC7167110 19585527.0 10.1002/jcb.22268 zg5yyj66 0.346781 Volmer_2010, Yasuda-Inoue_2013, Trobaugh_2017, den_Boon_2010, Meyerson_2017
728 Viswanathan_2010 Viral hijacking of the host ubiquitin system to evade interferon responses Viswanathan, Kasinath; Früh, Klaus; DeFilippis, Victor 2010 2010-08-31 None N PMC2939720 20699190.0 10.1016/j.mib.2010.05.012 cj1xaygr 0.346331 Lester_2014, Rajsbaum_2013, Dixit_2013, Bailey-Elkin_2017 Rajsbaum_2013, van_Tol_2017, Wimmer_2015
729 Maginnis_2018 Virus–Receptor Interactions: The Key to Cellular Invasion Maginnis, Melissa S. 2018 2018-08-17 PMC N PMC6083867 29924965.0 10.1016/j.jmb.2018.06.024 mvdtoplq 0.346010 Lester_2014, Kindler_2014, Bermejo-Jambrina_2018, Berkhout_2006, Trobaugh_2017 Casasnovas_2013, Hussein_2015
730 Gao_P_2019 Reprogramming the unfolded protein response for replication by porcine reproductive and respiratory syndrome virus Gao, Peng; Chai, Yue; Song, Jiangwei; Liu, Teng; Chen, Peng; Zhou, Lei; Ge, Xinna; Guo, Xin; Han, Jun; Yang, Hanchun 2019 2019-11-18 COMM-USE N PMC6932825 31738790.0 10.1371/journal.ppat.1008169 u86ggw11 0.345976 Ban_J_2018, Meyerson_2017, Dixit_2013, Greene_2012, Berkhout_2006
731 Kirchdoerfer_2019 Structure of the SARS-CoV nsp12 polymerase bound to nsp7 and nsp8 co-factors Kirchdoerfer, Robert N.; Ward, Andrew B. 2019 2019-05-28 None N PMC6538669 31138817.0 10.1038/s41467-019-10280-3 gybjij1l 0.345921 Pong_2011, Stork_2011, Meyerson_2017, Yasuda-Inoue_2013, den_Boon_2010 Kirchdoerfer_2019
732 Bieniossek_2012 MultiBac: expanding the research toolbox for multiprotein complexes Bieniossek, Christoph; Imasaki, Tsuyoshi; Takagi, Yuichiro; Berger, Imre 2012 2012-02-29 PMC N PMC7127121 22154230.0 10.1016/j.tibs.2011.10.005 gfx4cq03 0.345817 Berkhout_2006, UNKNOWN_2004, Cullen_2009, Haasnoot_2010 Fukai_2016, Sun_D_2016, van_der_Linden_2014
733 Darlix_2014 Retrospective on the all-in-one retroviral nucleocapsid protein Darlix, Jean-Luc; de Rocquigny, Hugues; Mauffret, Olivier; Mély, Yves 2014 2014-11-26 PMC N PMC7114435 24907482.0 10.1016/j.virusres.2014.05.011 hhv99i7f 0.345641 Trobaugh_2017, Stork_2011, den_Boon_2010, Meyerson_2017, Kang_2009 Sun_D_2016, Zhang_2015, Wulan_2015
734 Yu_X_2015 VHL negatively regulates SARS coronavirus replication by modulating nsp16 ubiquitination and stability Yu, Xiao; Chen, Shuliang; Hou, Panpan; Wang, Min; Chen, Yu; Guo, Deyin 2015 2015-04-03 PMC N PMC7092858 25732088.0 10.1016/j.bbrc.2015.02.097 0bkvtaqx 0.345487 Yasuda-Inoue_2013, Stork_2011, Pong_2011, Meyerson_2017, Kang_2009
735 Herold_2001 Poliovirus RNA Replication Requires Genome Circularization through a Protein–Protein Bridge Herold, Jens; Andino, Raul 2001 2001-03-01 PMC N PMC7129834 11463383.0 10.1016/s1097-2765(01)00205-2 gs8s7kn8 0.345487 Stork_2011, den_Boon_2010, Pong_2011, Yasuda-Inoue_2013 Bhullar_2014, YU_W_1995
736 Nakagawa_2016 Chapter Five Viral and Cellular mRNA Translation in Coronavirus-Infected Cells Nakagawa, K.; Lokugamage, K.G.; Makino, S. 2016 2016-12-31 None N PMC5388242 27712623.0 10.1016/bs.aivir.2016.08.001 ncufofro 0.345322 Lamb_1991, Rice_1992, Yasuda-Inoue_2013, Stork_2011, Trobaugh_2017 Tzeng_2006, Galán_2009, Bhullar_2014
737 Shoji-Kawata_2009 Autophagy, antiviral immunity, and viral countermeasures Shoji-Kawata, Sanae; Levine, Beth 2009 2009-09-30 None N PMC2739265 19264100.0 10.1016/j.bbamcr.2009.02.008 032utjfh 0.345322 Lester_2014, Viswanathan_2010, Mao_J_2019, Kim_S_2018 Espert_2007, Lee_H_2008, Galluzzi_2008
738 Chen_2009 Interaction between SARS-CoV helicase and a multifunctional cellular protein (Ddx5) revealed by yeast and mammalian cell two-hybrid systems Chen, Jin-Yan; Chen, Wan-Nan; Poon, Kwok-Man Vincent; Zheng, Bo-Jian; Lin, Xu; Wang, Yong-Xiang; Wen, Yu-Mei 2009 2009-02-18 PMC N PMC7087151 19224332.0 10.1007/s00705-009-0323-y 238e30ii 0.344732 Li_C_2013, Meyerson_2017, Yasuda-Inoue_2013, Kang_2009, Li_C_2014 Wang_2009, Han_M_2008
739 Petersson_2012 The p53 target gene TRIM22 directly or indirectly interacts with the translation initiation factor eIF4E and inhibits the binding of eIF4E to eIF4G Petersson, Jessica; Ageberg, Malin; Sandén, Carl; Olofsson, Tor; Gullberg, Urban; Drott, Kristina 2012 2012-05-31 PMC N PMC7161774 22509910.0 10.1111/boc.201100099 kahi93gj 0.344458 Blank_2017, Yasuda-Inoue_2013, Ivanova_2015, Ban_J_2018, Meyerson_2017
740 Kovalev_2014 The Expanding Functions of Cellular Helicases: The Tombusvirus RNA Replication Enhancer Co-opts the Plant eIF4AIII-Like AtRH2 and the DDX5-Like AtRH5 DEAD-Box RNA Helicases to Promote Viral Asymmetric RNA Replication Kovalev, Nikolay; Nagy, Peter D. 2014 2014-04-17 COMM-USE N PMC3990711 24743583.0 10.1371/journal.ppat.1004051 t21l6i3f 0.344218 Yasuda-Inoue_2013, Stork_2011, den_Boon_2010, Rice_1992, Pong_2011 Yasuda-Inoue_2013, Li_Z_2009
741 Louten_2016 Chapter 4 Virus Replication Louten, Jennifer 2016 2016-12-31 PMC N PMC7149683 10.1016/b978-0-12-800947-5.00004-1 q92fd2lo 0.344138 den_Boon_2010, Rice_1992, Roman_1985, Lenard_2008 Giorda_2013, Rott_1987, Wulan_2015, Dumas_2014
742 Fullam_2013 DExD/H-box RNA helicases as mediators of anti-viral innate immunity and essential host factors for viral replication Fullam, Anthony; Schröder, Martina 2013 2013-08-31 PMC N PMC7157912 23567047.0 10.1016/j.bbagrm.2013.03.012 e2jp88n9 0.343910 Yasuda-Inoue_2013, Taschuk_2020, Stork_2011, Li_Z_2011 Yasuda-Inoue_2013, Ariumi_2014, Taschuk_2020
743 Haimovich_2020 Identification and enrichment of SECReTE cis-acting RNA elements in the Coronaviridae and other (+) single-strand RNA viruses Gal Haimovich; Tsviya Olender; Camila Baez; Jeffrey E Gerst 2020 2020-04-20 BioRxiv Y 10.1101/2020.04.20.050088 2bh5j5p0 0.343723 Yasuda-Inoue_2013, Volmer_2010, Rice_1992, Stork_2011, den_Boon_2010
744 Chen_2012 Induction of autophagy enhances porcine reproductive and respiratory syndrome virus replication Chen, Quangang; Fang, Liurong; Wang, Dang; Wang, Shaohua; Li, Ping; Li, Mao; Luo, Rui; Chen, Huanchun; Xiao, Shaobo 2012 2012-02-29 PMC N PMC7114478 22119900.0 10.1016/j.virusres.2011.11.008 tm1jbvut 0.343402 Ban_J_2018, Greene_2012, Meyerson_2017, Sir_D_2008, Berkhout_2006 Ding_2017, Liu_Q_2012, Yuan_2016
745 Goodacre_2020 Protein-protein interactions of human viruses Goodacre, Norman; Devkota, Prajwal; Bae, Eunhae; Wuchty, Stefan; Uetz, Peter 2020 2020-03-31 PMC N PMC7102568 30031213.0 10.1016/j.semcdb.2018.07.018 7rnf2iyw 0.343122 Trobaugh_2017, Berkhout_2006, Fauci_2006, Rivas_2016, Haasnoot_2010 Durmuş_2017, Popescu_2011, Vigerust_2011, Zhang_2015
746 von_Brunn_2015 Genetic deficiency and polymorphisms of cyclophilin A reveal its essential role for Human Coronavirus 229E replication von Brunn, Albrecht; Ciesek, Sandra; von Brunn, Brigitte; Carbajo-Lozoya, Javier 2015 2015-10-31 PMC N PMC7102849 26318518.0 10.1016/j.coviro.2015.08.004 8oyonsoj 0.341848 Rice_1992, Meyerson_2017, Pong_2011, Stork_2011, den_Boon_2010 Tanaka_2013, Zhou_2012, Wilde_2019
747 Domingo_2016 Chapter 4 Interaction of Virus Populations with Their Hosts Domingo, Esteban 2016 2016-12-31 PMC N PMC7150142 10.1016/b978-0-12-800837-9.00004-6 bl5bagvg 0.341848 Rivas_2016, Domingo_2020, Wang_2018, Lester_2014 Domingo_2020, Rodríguez_2020, Webby_2004, Giorda_2013
748 Aris-Brosou_2019 Viral Long-Term Evolutionary Strategies Favor Stability over Proliferation Aris-Brosou, Stéphane; Parent, Louis; Ibeh, Neke 2019 2019-07-24 COMM-USE N PMC6722887 31344814.0 10.3390/v11080677 qeao4ghg 0.341342 den_Boon_2010, Trobaugh_2017, Rice_1992, Wang_2018, Auewarakul_2005 Aris-Brosou_2019, Koonin_2013, Masante_2015
749 Thukral_2017 s8ORF2 protein of infectious salmon anaemia virus is a RNA-silencing suppressor and interacts with Salmon salar Mov10 (SsMov10) of the host RNAi machinery Thukral, Vandana; Varshney, Bhavna; Ramly, Rimatulhana B.; Ponia, Sanket S.; Mishra, Sumona Karjee; Olsen, Christel M.; Banerjea, Akhil C.; Mukherjee, Sunil K.; Zaidi, Rana; Rimstad, Espen; Lal, Sunil K. 2017 2017-12-07 PMC N PMC7089075 29218433.0 10.1007/s11262-017-1526-z c8yr7nlo 0.341287 Rice_1992, Meyerson_2017, Tallmadge_2008, Ryu_W_2017, Li_C_2013
750 Knodel_2018 Quantitative Analysis of Hepatitis C NS5A Viral Protein Dynamics on the ER Surface Knodel, Markus M.; Nägel, Arne; Reiter, Sebastian; Vogel, Andreas; Targett-Adams, Paul; McLauchlan, John; Herrmann, Eva; Wittum, Gabriel 2018 2018-01-08 COMM-USE N PMC5795441 29316722.0 10.3390/v10010028 58xrrowk 0.341164 den_Boon_2010, Trobaugh_2017, Volmer_2010, Tessier_2019, Popescu_2011 Popescu_2011, Neufeldt_2016, Kanjanahaluethai_2007
751 Song_2011 Proteomic Characterization of Influenza H5N1 virus-like particles and their protective immunogenicity Song, Jae-Min; Choi, Chi-Won; Kwon, Sang-Oh; Compans, Richard. W.; Kang, Sang-Moo; Kim, Seung Il 2011 2011-08-05 PMC N PMC3151535 21688770.0 10.1021/pr200086v 92fa993l 0.340524 Tallmadge_2008, Yasui_2016, Rice_1992, Lu_P_2016, Compton_2014 Andoh_2015, Lin_S_2013, Oleszak_1990, Liu_S_2006
752 Locker_1999 An Unconventional Role for Cytoplasmic Disulfide Bonds in Vaccinia Virus Proteins Locker, Jacomine Krijnse; Griffiths, Gareth 1999 1999-01-25 NONCOMM N PMC2132897 9922453.0 f7eavha1 0.339972 Gomis-Rüth_2003, Volmer_2010, Narayanan_2003, Diaz_2011, den_Boon_2010 Zhang_2015, Gordon_1991, Deng_2019
753 Cotton_2006 The VPgPro protein of Turnip mosaic virus: In vitro inhibition of translation from a ribonuclease activity Cotton, Sophie; Dufresne, Philippe J.; Thivierge, Karine; Ide, Christine; Fortin, Marc G. 2006 2006-07-20 PMC N 16647732.0 10.1016/j.virol.2006.03.019 sxhrkozi 0.339972 Stork_2011, Yasuda-Inoue_2013, Rice_1992, Meyerson_2017, Li_Z_2010
754 Kwak_2011 Annexin A2 Binds RNA and Reduces the Frameshifting Efficiency of Infectious Bronchitis Virus Kwak, Hoyun; Park, Min Woo; Jeong, Sunjoo 2011 2011-08-30 COMM-USE N PMC3168876 21918681.0 10.1371/journal.pone.0024067 uqrwq5qk 0.339314 Yasuda-Inoue_2013, Stork_2011, Meyerson_2017, Pong_2011, Liu_H_2009 Zhang_2015
755 Agudelo-Romero_2008 Virus Adaptation by Manipulation of Host's Gene Expression Agudelo-Romero, Patricia; Carbonell, Pablo; Perez-Amador, Miguel A.; Elena, Santiago F. 2008 2008-06-11 COMM-USE N PMC2398778 18545680.0 10.1371/journal.pone.0002397 3ib99gup 0.339169 Berkhout_2006, Rivas_2016, Trobaugh_2017, Rice_1992, Kindler_2014 Rodríguez_2020, Galluzzi_2008
756 Timani_2005 Nuclear/nucleolar localization properties of C-terminal nucleocapsid protein of SARS coronavirus Timani, Khalid Amine; Liao, Qingjiao; Ye, Linbai; Zeng, Yingchun; Liu, Jing; Zheng, Yi; Ye, Li; Yang, Xiaojun; Lingbao, Kong; Gao, Jingrong; Zhu, Ying 2005 2005-12-31 PMC Y PMC7114095 15992957.0 10.1016/j.virusres.2005.05.007 g5vcbn0n 0.338899 Volmer_2010, UNKNOWN_1987, UNKNOWN_1993, UNKNOWN_1993, UNKNOWN_1993 Guo_Y_2003, Zhang_2015, Yuan_2005, Ren_A_2004
757 Tan_Y_2012 Binding of the 5′-untranslated region of coronavirus RNA to zinc finger CCHC-type and RNA-binding motif 1 enhances viral replication and transcription Tan, Yong Wah; Hong, Wanjin; Liu, Ding Xiang 2012 2012-02-22 NONCOMM N PMC3367200 22362731.0 10.1093/nar/gks165 d1sgnxc0 0.338899 Stork_2011, Volmer_2010, Meyerson_2017, Pong_2011, Kang_2009 Bhullar_2014
758 León-Juárez_2017 Cellular and molecular mechanisms of viral infection in the human placenta León-Juárez, Moises; Martínez–Castillo, Macario; González-García, Luis Didier; Helguera-Repetto, Addy Cecilia; Zaga-Clavellina, Verónica; García-Cordero, Julio; Flores-Pliego, Arturo; Herrera-Salazar, Alma; Vázquez-Martínez, Edgar Ricardo; Reyes-Muñoz, Enrique 2017 2017-07-29 PMC N PMC7108519 28903546.0 10.1093/femspd/ftx093 yjv9flei 0.338830 Potgieter_1986, Lester_2014, Shi_J_2012, Kim_S_2018, Mao_J_2019 Ansuini_2013
759 Stehle_2009 Specificity switching in virus–receptor complexes Stehle, Thilo; Casasnovas, José M 2009 2009-04-30 PMC N PMC7126087 19342221.0 10.1016/j.sbi.2009.02.013 nxjt8lo2 0.338607 Trobaugh_2017, Berkhout_2006, Haasnoot_2010, Rice_1992, Lester_2014 Rott_1987, Watanabe_2019, Casasnovas_2013
760 Vigerust_2007 Virus glycosylation: role in virulence and immune interactions Vigerust, David J.; Shepherd, Virginia L. 2007 2007-05-31 PMC N PMC7127133 17398101.0 10.1016/j.tim.2007.03.003 1bxoxy30 0.338401 Lu_P_2016, Potgieter_1986, Watanabe_2019, Mao_J_2019 Watanabe_2019, Vigerust_2011, Lee_C_2019, Bagdonaite_2018
761 Turcu_2009 Regulation and Cellular Roles of Ubiquitin-specific Deubiquitinating Enzymes Turcu, Francisca E. Reyes; Ventii, Karen H.; Wilkinson, Keith D. 2009 2009-06-01 PMC N PMC2734102 19489724.0 10.1146/annurev.biochem.78.082307.091526 l9urey1l 0.338323 Choudhury_2017, Blank_2017, Greene_2012, Pridgeon_2008 Wimmer_2015, Deng_2019, Sato_2019
762 Athmer_2017 In Situ Tagged nsp15 Reveals Interactions with Coronavirus Replication/Transcription Complex-Associated Proteins Athmer, Jeremiah; Fehr, Anthony R.; Grunewald, Matthew; Smith, Everett Clinton; Denison, Mark R.; Perlman, Stanley 2017 2017-01-31 COMM-USE N PMC5285509 28143984.0 10.1128/mbio.02320-16 pep6c0k2 0.337942 Yasuda-Inoue_2013, Volmer_2010, Stork_2011, Pong_2011, Li_C_2013
763 Lee_H_2008 Autophagy and antiviral immunity Lee, Heung Kyu; Iwasaki, Akiko 2008 2008-02-29 None N PMC2271118 18262399.0 10.1016/j.coi.2008.01.001 7upksc9f 0.337870 Lester_2014, Mao_J_2019, Kim_S_2018, Shi_J_2012, Rajsbaum_2013 Schmid_2007, Shoji-Kawata_2009, Espert_2007, Mao_J_2019
764 Alguwaizani_2018 Predicting Interactions between Virus and Host Proteins Using Repeat Patterns and Composition of Amino Acids Alguwaizani, Saud; Park, Byungkyu; Zhou, Xiang; Huang, De-Shuang; Han, Kyungsook 2018 2018-05-09 COMM-USE N PMC5966669 29854357.0 10.1155/2018/1391265 0dxrai3j 0.337717 Lee_C_2017, Chang_2011, Sen_D_2018, Naito_2007 Zhou_2018, Goodacre_2020, Bahir_2009
765 Pendleton_2007 Generating Antibodies to the Gene 3 Proteins of Infectious Bronchitis Virus Pendleton, Amanda R.; Machamer, Carolyn E. 2007 2007-11-28 PMC N PMC7120050 19057877.0 10.1007/978-1-59745-181-9_14 dc7yclsz 0.337314 Tallmadge_2008, Volmer_2010, Li_C_2013, Li_C_2014, Compton_2014 Mockett_1985, Ren_X_2008
766 Zhang_2019 The in vivo ISGylome links ISG15 to metabolic pathways and autophagy upon Listeria monocytogenes infection Zhang, Yifeng; Thery, Fabien; Wu, Nicholas C.; Luhmann, Emma K.; Dussurget, Olivier; Foecke, Mariko; Bredow, Clara; Jiménez-Fernández, Daniel; Leandro, Kevin; Beling, Antje; Knobeloch, Klaus-Peter; Impens, Francis; Cossart, Pascale; Radoshevich, Lilliana 2019 2019-11-26 None N PMC6879477 31772204.0 10.1038/s41467-019-13393-x rh8fos6i 0.337314 Ban_J_2018, Martín-Vicente_2017, Trobaugh_2017, Blank_2017, Haasnoot_2010 Deng_2019, Yan_J_2020, Morales_2013
767 Liu_Y_2012 Infectomics Screening for Novel Antiviral Drug Targets Liu, Yuan; Yin, Qi; Yuan, Yao; Yang, Wenyong; Jiang, Chuangui; Huang, Canhua 2012 2012-10-16 PMC N PMC7163650 10.1002/ddr.21027 qh3q2ncu 0.337085 Berkhout_2006, Trobaugh_2017, Haasnoot_2010, Shi_J_2012, Lester_2014
768 Sharma_2011 SARS-CoV 9b Protein Diffuses into Nucleus, Undergoes Active Crm1 Mediated Nucleocytoplasmic Export and Triggers Apoptosis When Retained in the Nucleus Sharma, Kulbhushan; Åkerström, Sara; Sharma, Anuj Kumar; Chow, Vincent T. K.; Teow, Shumein; Abrenica, Bernard; Booth, Stephanie A.; Booth, Timothy F.; Mirazimi, Ali; Lal, Sunil K. 2011 2011-05-27 COMM-USE N PMC3103500 21637748.0 10.1371/journal.pone.0019436 ddv86eoy 0.336454 Volmer_2010, Blank_2017, Greene_2012, Wang_2013, Dubois_2016 Fulcher_2011, Han_M_2008, Timani_2005, Yan_J_2020
769 Scott_2011 NoD: a Nucleolar localization sequence detector for eukaryotic and viral proteins Scott, Michelle S; Troshin, Peter V; Barton, Geoffrey J 2011 2011-08-03 COMM-USE N PMC3166288 21812952.0 10.1186/1471-2105-12-317 59yvbupx 0.336181 Lee_C_2017, Chang_2011, Qi_Z_2018, Cheng_2013, Wang_2006 Zhang_2015, Fulcher_2011, Wulan_2015
770 Carey_2020 Protein Kinase C subtype δ interacts with Venezuelan equine encephalitis virus capsid protein and regulates viral RNA binding through modulation of capsid phosphorylation Carey, Brian D.; Akhrymuk, Ivan; Dahal, Bibha; Pinkham, Chelsea L.; Bracci, Nicole; Finstuen-Magro, Sarah; Lin, Shih-Chao; Lehman, Caitlin W.; Sokoloski, Kevin J.; Kehn-Hall, Kylene 2020 2020-03-09 COMM-USE N PMC7082041 32150585.0 10.1371/journal.ppat.1008282 ybtk9cp1 0.336005 Kumar_2016, Meyerson_2017, Ban_J_2018, Li_C_2013, Tallmadge_2008 Brockway_2005, Zhang_2015, Hu_X_2016
771 Luo_H_2010 Protein degradation systems in viral myocarditis leading to dilated cardiomyopathy Luo, Honglin; Wong, Jerry; Wong, Brian 2010 2010-01-15 PMC N PMC7109953 19578074.0 10.1093/cvr/cvp225 15c85zi4 0.335899 Potgieter_1986, Lester_2014, Mao_J_2019, Kim_S_2018, Shi_J_2012 Galluzzi_2008, Liu_J_2007
772 Bost_2001 Mouse Hepatitis Virus Replicase Protein Complexes Are Translocated to Sites of M Protein Accumulation in the ERGIC at Late Times of Infection Bost, Anne G.; Prentice, Erik; Denison, Mark R. 2001 2001-06-20 PMC N PMC7130751 11414802.0 10.1006/viro.2001.0932 92jm8e93 0.335850 Volmer_2010, Quiner_2010, Stertz_2007, Narayanan_2003, den_Boon_2010 Neufeldt_2016
773 Ziebuhr_2004 Molecular biology of severe acute respiratory syndrome coronavirus Ziebuhr, John 2004 2004-08-31 PMC Y PMC7108451 15358261.0 10.1016/j.mib.2004.06.007 y64i8ui3 0.334119 Rice_1992, Ryu_W_2017, Lu_P_2016, den_Boon_2010, Wang_2018 Thornbrough_2016, Adedeji_2014, Tong_2006, Bartlam_2005
774 MacMicking_2012 Interferon-inducible effector mechanisms in cell-autonomous immunity MacMicking, John D. 2012 2012-04-25 None N PMC4150610 22531325.0 10.1038/nri3210 dxnl32rf 0.334119 Lester_2014, Shi_J_2012, Berkhout_2006, Rajsbaum_2013, Viswanathan_2010 Li_C_2018, Carrero_2013
775 Levine_2015 Beclin orthologs: integrative hubs of cell signaling, membrane trafficking, and physiology Levine, Beth; Liu, Rong; Dong, Xiaonan; Zhong, Qing 2015 2015-09-30 None N PMC4554927 26071895.0 10.1016/j.tcb.2015.05.004 vc2pdph9 0.333942 Shi_J_2012, Jang_2019, Berkhout_2006, Postigo_2009 Jacomin_2018, Lin_L_2010, Fulcher_2011, Cadwell_2018
776 Vidalain_2014 A Field-Proven Yeast Two-Hybrid Protocol Used to Identify Coronavirus–Host Protein–Protein Interactions Vidalain, Pierre-Olivier; Jacob, Yves; Hagemeijer, Marne C.; Jones, Louis M.; Neveu, Grégory; Roussarie, Jean-Pierre; Rottier, Peter J. M.; Tangy, Frédéric; de Haan, Cornelis A. M. 2014 2014-12-18 PMC N PMC7121825 25720483.0 10.1007/978-1-4939-2438-7_18 qmkneuj5 0.333942 Berkhout_2006, Rice_1992, Trobaugh_2017, Naito_2007, Haasnoot_2010 Zhang_2015, van_der_Linden_2014, Lee_C_2019
777 Lai_C_2014 Nonstructural Protein 5A Is Incorporated into Hepatitis C Virus Low-Density Particle through Interaction with Core Protein and Microtubules during Intracellular Transport Lai, Chao-Kuen; Saxena, Vikas; Tseng, Chung-Hsin; Jeng, King-Song; Kohara, Michinori; Lai, Michael M. C. 2014 2014-06-06 COMM-USE N PMC4048239 24905011.0 10.1371/journal.pone.0099022 84zfabti 0.333923 Liu_H_2009, Narayanan_2003, Kang_2009, Volmer_2010 Popescu_2011, Neufeldt_2016, Romero-Brey_2015
778 Basu_2016 A structural perspective of RNA recognition by intrinsically disordered proteins Basu, Sushmita; Bahadur, Ranjit Prasad 2016 2016-05-26 PMC N PMC7079799 27229125.0 10.1007/s00018-016-2283-1 qk27wgmd 0.333872 Ivarsson_2012, Taschuk_2020, Dubois_2016, Trobaugh_2017 Järvelin_2016, Xia_H_2015, Singleton_2018, Shi_W_2020
779 Mak_T_2016 Vimentin in Bacterial Infections Mak, Tim N.; Brüggemann, Holger 2016 2016-04-18 COMM-USE N PMC4931667 27096872.0 10.3390/cells5020018 any3mpkq 0.333762 Lester_2014, Shi_J_2012, Kim_S_2018, Jang_2019, Viswanathan_2010 Bartlett_2011, Zhang_2015, Galluzzi_2008, Lin_L_2010
780 Ning_2014 Viral suppression of innate immunity via spatial isolation of TBK1/IKKε from mitochondrial antiviral platform Ning, Yun-Jia; Wang, Manli; Deng, Maping; Shen, Shu; Liu, Wei; Cao, Wu-Chun; Deng, Fei; Wang, Yan-Yi; Hu, Zhihong; Wang, Hualin 2014 2014-08-01 PMC N PMC7107466 24706939.0 10.1093/jmcb/mju015 b68tn3vz 0.333762 Dixit_2013, Ban_J_2018, Meyerson_2017, Liu_Y_2017, Lester_2014
781 Verheije_2008 Mouse Hepatitis Coronavirus RNA Replication Depends on GBF1-Mediated ARF1 Activation Verheije, Monique H.; Raaben, Matthijs; Mari, Muriel; te Lintelo, Eddie G.; Reggiori, Fulvio; van Kuppeveld, Frank J. M.; Rottier, Peter J. M.; de Haan, Cornelis A. M. 2008 2008-06-13 COMM-USE N PMC2398782 18551169.0 10.1371/journal.ppat.1000088 j3ehiwn9 0.333734 Yasuda-Inoue_2013, Greene_2012, Volmer_2010, Meyerson_2017, Belov_2010
782 Ward_2016 The Golgi associated ERI3 is a Flavivirus host factor Ward, Alex Michael; Calvert, Meredith E. K.; Read, Leah R.; Kang, Seokyoung; Levitt, Brandt E.; Dimopoulos, George; Bradrick, Shelton S.; Gunaratne, Jayantha; Garcia-Blanco, Mariano A. 2016 2016-09-29 None N PMC5041148 27682269.0 10.1038/srep34379 7hbsxo7q 0.333726 Ryu_W_2017, Tallmadge_2008, Lu_P_2016, Rice_1992, Li_C_2014 Case_2017, Niemeyer_2018
783 Bui_Q_2009 Large Arf1 guanine nucleotide exchange factors: evolution, domain structure, and roles in membrane trafficking and human disease Bui, Quynh Trang; Golinelli-Cohen, Marie-Pierre; Jackson, Catherine L. 2009 2009-08-11 PMC N PMC7088145 19669794.0 10.1007/s00438-009-0473-3 3zvwu5bd 0.331499 Taschuk_2020, Greene_2012, Ivarsson_2012, Yasuda-Inoue_2013, Clayton_2013 Scrima_2004, Mades_2012, Xia_H_2015
784 Tan_Y_2007 Regulation of cell death during infection by the severe acute respiratory syndrome coronavirus and other coronaviruses Tan, Yee‐Joo; Lim, Seng Gee; Hong, Wanjin 2007 2007-08-20 PMC N PMC7162196 17714515.0 10.1111/j.1462-5822.2007.01034.x gs80celr 0.331203 Potgieter_1986, Trobaugh_2017, Berkhout_2006, Shi_J_2012, Mao_J_2019
785 Chang_2014 The SARS coronavirus nucleocapsid protein – Forms and functions Chang, Chung-ke; Hou, Ming-Hon; Chang, Chi-Fon; Hsiao, Chwan-Deng; Huang, Tai-huang 2014 2014-03-31 PMC N PMC7113676 24418573.0 10.1016/j.antiviral.2013.12.009 6fue84x6 0.331153 Pong_2011, den_Boon_2010, Stork_2011, Kang_2009, Volmer_2010 Zhang_2015, Chang_2005, Sun_D_2016
786 Borrow_2006 Cytotoxic T‐lymphocyte escape viral variants: how important are they in viral evasion of immune clearance in vivo? Borrow, Persephone; Shaw, George M. 2006 2006-04-28 PMC N PMC7165923 9795762.0 10.1111/j.1600-065x.1998.tb01206.x 7o6htufh 0.330986 Trobaugh_2017, Berkhout_2006, Rivas_2016, Rice_1992
787 de_Melo_2013 NOA36 Protein Contains a Highly Conserved Nucleolar Localization Signal Capable of Directing Functional Proteins to the Nucleolus, in Mammalian Cells de Melo, Ivan S.; Jimenez-Nuñez, Maria D.; Iglesias, Concepción; Campos-Caro, Antonio; Moreno-Sanchez, David; Ruiz, Felix A.; Bolívar, Jorge 2013 2013-03-13 COMM-USE N PMC3596294 23516598.0 10.1371/journal.pone.0059065 0jx6mwiw 0.330720 Volmer_2010, UNKNOWN_1993, UNKNOWN_1992, UNKNOWN_1987 Someya_2008, Piñón_1997
788 Sungsuwan_2020 Nucleocapsid proteins from other swine enteric coronaviruses differentially modulate PEDV replication Sungsuwan, Suttipun; Jongkaewwattana, Anan; Jaru-Ampornpan, Peera 2020 2020-01-15 PMC N PMC7112109 31756532.0 10.1016/j.virol.2019.11.007 lkd2mj27 0.330644 Tallmadge_2008, Lu_P_2016, Ryu_W_2017, Crowe_2014, Yasui_2016 Niemeyer_2018, Zhang_2015, Wang_2019
789 Cantoni_2018 Ebolaviruses: New roles for old proteins Cantoni, Diego; Rossman, Jeremy S. 2018 2018-05-03 COMM-USE N PMC5933699 29723187.0 10.1371/journal.pntd.0006349 lk2ny1wd 0.330478 den_Boon_2010, Ryu_W_2017, Walker_2010, Potgieter_1986, Rice_1992 Graham_2008, Barrette_2011, Narayanan_2015, Zhang_2015
790 Arnold_2012 Computational analysis of interactomes: Current and future perspectives for bioinformatics approaches to model the host–pathogen interaction space Arnold, Roland; Boonen, Kurt; Sun, Mark G.F.; Kim, Philip M. 2012 2012-08-31 PMC N PMC7128575 22750305.0 10.1016/j.ymeth.2012.06.011 8ef74ltg 0.330289 Berkhout_2006, Wilson_2012, Chasman_2016, Holmes_2007, Trobaugh_2017 Durmuş_2017, Vigerust_2011, Martinez-Martin_2017, Zhang_2015
791 Verchot-Lubicz_2008 Viral Suppressors of Gene Silencing Verchot-Lubicz, J.; Carr, J.P. 2008 2008-12-31 PMC N PMC7149379 10.1016/b978-012374410-4.00718-4 cktp4cu3 0.330074 Trobaugh_2017, Herbert_2016, Berkhout_2006, Haasnoot_2010 Haddad_2011, Arias_2004, Rothe_2010
792 Checconi_2019 Role of Glutathionylation in Infection and Inflammation Checconi, Paola; Limongi, Dolores; Baldelli, Sara; Ciriolo, Maria Rosa; Nencioni, Lucia; Palamara, Anna Teresa 2019 2019-08-20 COMM-USE N PMC6723385 31434242.0 10.3390/nu11081952 bg3b88us 0.329955 Viswanathan_2010, Rytkönen_2007, Shi_J_2012, Taschuk_2020, Jang_2019 Sobocińska_2018, Drago-Serrano_2017, Zhang_2015, Stolf_2011
793 Fernández‐Oliva_2019 Targeting host lipid flows: Exploring new antiviral and antibiotic strategies Fernández‐Oliva, Alberto; Ortega‐González, Paula; Risco, Cristina 2019 2019-01-17 PMC N PMC7162424 30585688.0 10.1111/cmi.12996 pra0398r 0.329827 Orvedahl_2008, Wisskirchen_2014, Conzelmann_1996, UNKNOWN_2004
794 Fehr_2018 Viral Macrodomains: Unique Mediators of Viral Replication and Pathogenesis Fehr, Anthony R.; Jankevicius, Gytis; Ahel, Ivan; Perlman, Stanley 2018 2018-07-31 PMC N PMC6003825 29268982.0 10.1016/j.tim.2017.11.011 km0qcmlh 0.329688 Taschuk_2020, Yasuda-Inoue_2013, den_Boon_2010, Klein_2011, Choudhury_2017 Sun_D_2016, Watanabe_2019, Deng_2019, Mielech_2014
795 Yang_2016 A new role of neuraminidase (NA) in the influenza virus life cycle: implication for developing NA inhibitors with novel mechanism of action Yang, Jie; Liu, Shuwen; Du, Lanying; Jiang, Shibo 2016 2016-04-08 PMC N PMC7169148 27061123.0 10.1002/rmv.1879 za4ylcw1 0.329538 Lu_P_2016, Potgieter_1986, Walker_2010, Berkhout_2006, Trobaugh_2017
796 Shoemaker_2019 CRISPR screening using an expanded toolkit of autophagy reporters identifies TMEM41B as a novel autophagy factor Shoemaker, Christopher J.; Huang, Tina Q.; Weir, Nicholas R.; Polyakov, Nicole J.; Schultz, Sebastian W.; Denic, Vladimir 2019 2019-04-01 COMM-USE N PMC6459555 30933966.0 10.1371/journal.pbio.2007044 5e5jn6j4 0.329470 Berkhout_2006, Haasnoot_2010, Dubois_2016, Hurley_2014, Levine_2015 Anderson_2020, Ding_2017
797 Jourdan_2012 Biophysical characterisation of the nucleocapsid protein from a highly pathogenic porcine reproductive and respiratory syndrome virus strain Jourdan, Stefanie S.; Osorio, Fernando A.; Hiscox, Julian A. 2012 2012-03-09 PMC N PMC7092862 22306009.0 10.1016/j.bbrc.2011.11.126 e0wfn9fz 0.329375 Meyerson_2017, Pong_2011, Stork_2011, Rice_1992, Kang_2009 Zhang_2015
798 Miras_2017 Non-canonical Translation in Plant RNA Viruses Miras, Manuel; Miller, W. Allen; Truniger, Verónica; Aranda, Miguel A. 2017 2017-04-06 COMM-USE N PMC5382211 28428795.0 10.3389/fpls.2017.00494 2t09zqqi 0.328203 Lamb_1991, Trobaugh_2017, Rice_1992, Herbert_2016, Stork_2011 Firth_2012, Sasvari_2011
799 Roingeard_2012 Viral detection by electron microscopy: past, present and future Roingeard, Philippe 2012 2012-01-09 PMC N PMC7161876 18627353.0 10.1042/bc20070173 iknoqb4d 0.327628 Berkhout_2006, Rice_1992, Conzelmann_1996, den_Boon_2010, Trobaugh_2017
800 Subauste_2009 Autophagy as an antimicrobial strategy Subauste, Carlos S 2009 2009-08-01 PMC N PMC3280690 19681702.0 10.1586/eri.09.41 vs3oy9j0 0.327307 Jang_2019, Lester_2014, Kim_S_2018, Shi_J_2012, Viswanathan_2010 Rey-Jurado_2015, Randow_2012, Lee_H_2008, Orvedahl_2008
801 Mateu_2013 Introduction: The Structural Basis of Virus Function Mateu, Mauricio G. 2013 2013-02-16 PMC N PMC7120296 23737047.0 10.1007/978-94-007-6552-8_1 4lcqag0z 0.327103 Denison_2008, Hull_2014, den_Boon_2010, Cullen_2009, Berkhout_2006 Wulan_2015, Sun_D_2016, Rott_1987, Risco_2013
802 Lutz_2019 Mammalian orthoreovirus infection is enhanced in cells pre-treated with sodium arsenite Michael M. Lutz; Megan P. Worth; Meleana M. Hinchman; John S. L. Parker; Emily D. Ledgerwood 2019 2019-02-20 BioRxiv N 10.1101/555367 cpfwzudq 0.326760 Ban_J_2018, Berkhout_2006, Trobaugh_2017, Volmer_2010, Meyerson_2017 Lutz_2019
803 Saura_1999 An Antiviral Mechanism of Nitric Oxide Inhibition of a Viral Protease Saura, Marta; Zaragoza, Carlos; McMillan, Audrey; Quick, Richard A; Hohenadl, Christine; Lowenstein, John M; Lowenstein, Charles J 1999 1999-01-01 PMC N PMC7129050 10023767.0 10.1016/s1074-7613(00)80003-5 le034mvq 0.326473 Li_C_2017, Meyerson_2017, Viswanathan_2010, Tang_2018 Wei_Z_2009, van_der_Linden_2014, Åkerström_2009
804 Fischer_2011 Viral channel forming proteins — Modeling the target Fischer, Wolfgang B.; Hsu, Hao-Jen 2011 2011-02-28 PMC N PMC7094444 20546700.0 10.1016/j.bbamem.2010.05.014 il354z9v 0.325976 Weissenhorn_2013, Hobman_1993, Volmer_2010, Cosson_2013, Modis_2013 Nieva_2012, Sze_C_2015, Ao_D_2015, Modis_2009
805 Kemp_2017 Oncolytic Reovirus Infection Is Facilitated by the Autophagic Machinery Kemp, Vera; Dautzenberg, Iris J. C.; Limpens, Ronald W.; van den Wollenberg, Diana J. M.; Hoeben, Rob C. 2017 2017-09-21 COMM-USE N PMC5691618 28934149.0 10.3390/v9100266 pv64issb 0.325659 Greene_2012, Ban_J_2018, Meyerson_2017, Berkhout_2006, Volmer_2010 Ding_2017, Alain_2007
806 Thomas_2016 Mitochondria and Antiviral Immunity Thomas, Sunil; Gale, Michael 2016 2016-04-30 PMC N PMC7121126 10.1007/978-1-4939-3612-0_10 opin0m5d 0.325081 UNKNOWN_1995, Schmidt_1982, Hurley_2014, UNKNOWN_1993 Neufeldt_2016
807 Gagné_2017 Importin β1 targeting by hepatitis C virus NS3/4A protein restricts IRF3 and NF‐κB signaling of IFNB1 antiviral response Gagné, Bridget; Tremblay, Nicolas; Park, Alex Y.; Baril, Martin; Lamarre, Daniel 2017 2017-05-02 PMC N PMC7169781 28295920.0 10.1111/tra.12480 39ai7a24 0.325039 Ban_J_2018, Meyerson_2017, Greene_2012, Yasuda-Inoue_2013, Dixit_2013
808 Netzband_2019 Epitranscriptomic marks: Emerging modulators of RNA virus gene expression Netzband, Rachel; Pager, Cara T. 2019 2019-11-06 PMC N PMC7169815 31694072.0 10.1002/wrna.1576 l8uwob6l 0.324828 Trobaugh_2017, Poltronieri_2015, Moon_2012, Yasuda-Inoue_2013, Atianand_2014
809 Pigeyre_2019 Interaction of a Densovirus with Glycans of the Peritrophic Matrix Mediates Oral Infection of the Lepidopteran Pest Spodoptera frugiperda Pigeyre, Laetitia; Schatz, Malvina; Ravallec, Marc; Gasmi, Leila; Nègre, Nicolas; Clouet, Cécile; Seveno, Martial; El Koulali, Khadija; Decourcelle, Mathilde; Guerardel, Yann; Cot, Didier; Dupressoir, Thierry; Gosselin-Grenet, Anne-Sophie; Ogliastro, Mylène 2019 2019-09-17 COMM-USE N PMC6783882 31533310.0 10.3390/v11090870 kje8lvgl 0.324766 Berkhout_2006, Trobaugh_2017, Herbert_2016, Haasnoot_2010, Shi_J_2012 Sun_D_2016, Alfajaro_2019
810 Mainou_2017 The Orchestra of Reovirus Cell Entry Mainou, Bernardo A. 2017 2017-07-13 PMC N PMC6897391 31815091.0 10.1007/s40588-017-0067-5 402o8uys 0.324592 Trobaugh_2017, Berkhout_2006, Lester_2014, Shi_J_2012, Kim_S_2018 Sun_D_2016, Giorda_2013
811 Frieman_2014 The art of war: battles between virus and host Frieman, Matthew 2014 2014-06-30 None N PMC4422063 24886699.0 10.1016/j.coviro.2014.05.001 7urp431m 0.324352 Mack_2007, Denison_2008, Fauci_2006, Stenseth_2008, Alcami_2000 Brüssow_2012, Rodríguez_2020, García-Sastre_2017, Simmonds_2018
812 Wylie_2013 Virome genomics: a tool for defining the human virome Wylie, Kristine M; Weinstock, George M; Storch, Gregory A 2013 2013-08-31 PMC N PMC3755052 23706900.0 10.1016/j.mib.2013.04.006 084o1dmp 0.323937 Rice_1992, Wang_2018, Trobaugh_2017, Conzelmann_1996 Meliopoulos_2012, Satyanarayana_2003, Giorda_2013
813 Palazzo_2017 ADP‐ribosylation: new facets of an ancient modification Palazzo, Luca; Mikoč, Andreja; Ahel, Ivan 2017 2017-04-26 PMC N PMC7163968 28383827.0 10.1111/febs.14078 gmzue6lj 0.323937 Rytkönen_2007, Shi_J_2012, Berkhout_2006, Lester_2014, Taschuk_2020
814 Lomonossoff_2018 Chapter Six TMV Particles: The Journey From Fundamental Studies to Bionanotechnology Applications Lomonossoff, George P.; Wege, Christina 2018 2018-12-31 PMC N PMC7112118 30266172.0 10.1016/bs.aivir.2018.06.003 emmtplv3 0.323482 Johnson_2018, Conzelmann_1996, UNKNOWN_2004, Shulla_2016 Sun_D_2016, Lomonossoff_2011
815 Somers_2013 A perspective on mammalian upstream open reading frame function Somers, Joanna; Pöyry, Tuija; Willis, Anne E. 2013 2013-08-31 PMC N 10.1016/j.biocel.2013.04.020 dtnysugh 0.323181 Trobaugh_2017, Haasnoot_2010, Wang_2007, Martínez-Salas_2008
816 Fasolo_2009 Protein Microarrays Fasolo, Joseph; Snyder, Michael 2009 2009-04-01 PMC N PMC7122403 19521827.0 10.1007/978-1-59745-540-4_12 39ix21x1 0.322980 Hu_S_2010, Cox_E_2015, Stoevesandt_2014, Rice_1992 Ponchon_2013, Stoevesandt_2014, Kwon_2009
817 Florin_2018 Tetraspanin Assemblies in Virus Infection Florin, Luise; Lang, Thorsten 2018 2018-05-25 COMM-USE N PMC5981178 29887866.0 10.3389/fimmu.2018.01140 5da6ph0y 0.322507 Greene_2012, Weissenhorn_2013, Jonker_2018, Trobaugh_2017, Tessier_2019 Zhang_2015, Fulcher_2011, Sun_D_2016
818 Lico_2007 Molecular farming for antigen (vaccine) production in plants Lico, Chiara; Baschieri, Selene; Marusic, Carla; Benvenuto, Eugenio 2007 2007-01-01 PMC N PMC7120765 10.1007/978-1-4020-5486-0_14 axbgacot 0.321806 UNKNOWN_2004, Berkhout_2006, Conzelmann_1996, Houzet_2011, Johnson_2018 Munshi_2018, Korban_2002, Margolin_2018, Dang_2015
819 Belouzard_2011 Hepatitis C virus entry into the hepatocyte Belouzard, Sandrine; Cocquerel, Laurence; Dubuisson, Jean 2011 2011-11-07 PMC N PMC7089486 10.2478/s11535-011-0076-y s15o0hie 0.321280 Greene_2012, den_Boon_2010, Compton_2014, Trobaugh_2017, Meyerson_2017 Neufeldt_2016, Sun_D_2016
820 Lam_Y_2009 Proteomics Analysis of the Nucleolus in Adenovirus-infected Cells Lam, Yun W.; Evans, Vanessa C.; Heesom, Kate J.; Lamond, Angus I.; Matthews, David A. 2009 2009-10-07 NONCOMM N PMC2808258 19812395.0 10.1074/mcp.m900338-mcp200 jgxbpy4j 0.321036 Volmer_2010, Trobaugh_2017, Rice_1992, Haasnoot_2010 Zhang_2015, Wulan_2015, Kumar_2015
821 Sasvari_2011 Synergistic Roles of Eukaryotic Translation Elongation Factors 1Bγ and 1A in Stimulation of Tombusvirus Minus-Strand Synthesis Sasvari, Zsuzsanna; Izotova, Lara; Kinzy, Terri Goss; Nagy, Peter D. 2011 2011-12-15 COMM-USE N PMC3240602 22194687.0 10.1371/journal.ppat.1002438 tkfozwpf 0.320747 Stork_2011, Li_Z_2010, den_Boon_2010, Yasuda-Inoue_2013 Li_Z_2010, Li_Z_2009
822 Neuman_2011 A structural analysis of M protein in coronavirus assembly and morphology Neuman, Benjamin W.; Kiss, Gabriella; Kunding, Andreas H.; Bhella, David; Baksh, M. Fazil; Connelly, Stephen; Droese, Ben; Klaus, Joseph P.; Makino, Shinji; Sawicki, Stanley G.; Siddell, Stuart G.; Stamou, Dimitrios G.; Wilson, Ian A.; Kuhn, Peter; Buchmeier, Michael J. 2011 2011-04-30 None N PMC4486061 21130884.0 10.1016/j.jsb.2010.11.021 1eg1vf8b 0.320161 den_Boon_2010, Volmer_2010, Gomis-Rüth_2003, Narayanan_2003, Trobaugh_2017 Zhang_2015, Voß_D_2009, Popescu_2011
823 Helms_2015 Targeting of the Hydrophobic Metabolome by Pathogens Helms, J. Bernd; Kaloyanova, Dora V.; Strating, Jeroen R. P.; van Hellemond, Jaap J.; van der Schaar, Hilde M.; Tielens, Aloysius G. M.; van Kuppeveld, Frank J. M.; Brouwers, Jos F. 2015 2015-04-23 PMC N PMC7169838 25754025.0 10.1111/tra.12280 vjz3etdi 0.319831 Lester_2014, Berkhout_2006, Shi_J_2012, Hertzog_2011, Kim_S_2018
824 Kindler_2014 To sense or not to sense viral RNA—essentials of coronavirus innate immune evasion Kindler, Eveline; Thiel, Volker 2014 2014-08-31 PMC N PMC7108419 24908561.0 10.1016/j.mib.2014.05.005 u8b5sccq 0.319740 Lester_2014, Mao_J_2019, Rajsbaum_2013, Viswanathan_2010 Schlee_2013, Case_2017
825 Kaloyanova_2014 Quantitative Proteomic Identification of Host Factors Involved in the Salmonella typhimurium Infection Cycle Kaloyanova, Dora; Vogels, Mijke; van Balkom, Bas W. M.; Helms, J. Bernd 2014 2014-09-08 PMC N PMC7121999 25253246.0 10.1007/978-1-4939-1625-2_2 1ztl96j1 0.319646 Volmer_2010, Trobaugh_2017, Berkhout_2006, Herbert_2016 Zhang_2015, Lam_Y_2009, Ding_2012, Salcedo_2003
826 Guo_L_2016 Autophagy Negatively Regulates Transmissible Gastroenteritis Virus Replication Guo, Longjun; Yu, Haidong; Gu, Weihong; Luo, Xiaolei; Li, Ren; Zhang, Jian; Xu, Yunfei; Yang, Lijun; Shen, Nan; Feng, Li; Wang, Yue 2016 2016-03-31 COMM-USE N PMC4814908 27029407.0 10.1038/srep23864 2lgg0p32 0.319445 Ban_J_2018, Meyerson_2017, Greene_2012, Kumar_2016 Ding_2017, Ávila-Pérez_2019
827 McFadden_2017 Protect this house: cytosolic sensing of viruses McFadden, Michael J; Gokhale, Nandan S; Horner, Stacy M 2017 2017-02-28 PMC N 27951430.0 10.1016/j.coviro.2016.11.012 73xcpknl 0.319024 Lester_2014, Kindler_2014, Shi_J_2012, Berkhout_2006, Hertzog_2011
828 Houzet_2011 Genome-wide screening using RNAi (RNA interference) to study host factors in viral replication and pathogenesis Houzet, Laurent; Jeang, Kuan-Teh 2011 2011-08-01 PMC N PMC3415036 21727185.0 10.1258/ebm.2010.010272 bd34mx77 0.318341 Berkhout_2006, Trobaugh_2017, Haasnoot_2010, Shi_J_2012 Rothe_2010, TAN_F_2004, Ma_Y_2007, Haddad_2011
829 Quintas_2017 Characterization of the African Swine Fever Virus Decapping Enzyme during Infection Quintas, Ana; Pérez-Núñez, Daniel; Sánchez, Elena G.; Nogal, Maria L.; Hentze, Matthias W.; Castelló, Alfredo; Revilla, Yolanda 2017 2017-11-30 COMM-USE N PMC5709586 29021398.0 10.1128/jvi.00990-17 hygwcj5c 0.317973 Volmer_2010, Meyerson_2017, Trobaugh_2017, Kang_2009, Yasuda-Inoue_2013 Sun_D_2016
830 Xin_S_2019 Epstein-Barr Virus Nuclear Antigen 1 Recruits Cyclophilin A to Facilitate the Replication of Viral DNA Genome Xin, Shuyu; Du, Shujuan; Liu, Lingzhi; Xie, Yan; Zuo, Lielian; Yang, Jing; Hu, Jingjin; Yue, Wenxing; Zhang, Jing; Cao, Pengfei; Zhu, Fanxiu; Lu, Jianhong 2019 2019-12-13 COMM-USE N PMC6923202 31921057.0 10.3389/fmicb.2019.02879 7og5umiq 0.317942 Meyerson_2017, Yasuda-Inoue_2013, Trobaugh_2017, Kang_2009, Ban_J_2018 Neufeldt_2016, Gastaldello_2013
831 Karlberg_2013 Structural biology of the writers, readers, and erasers in mono- and poly(ADP-ribose) mediated signaling Karlberg, Tobias; Langelier, Marie-France; Pascal, John M.; Schüler, Herwig 2013 2013-12-31 None N PMC3726583 23458732.0 10.1016/j.mam.2013.02.002 9jkhnxa4 0.317591 Taschuk_2020, Rytkönen_2007, Dubois_2016, Trobaugh_2017 Bütepage_2015, Rack_2020, Jankevicius_2013, Hakmé_2008
832 Cadwell_2018 Beyond self-eating: The control of nonautophagic functions and signaling pathways by autophagy-related proteins Cadwell, Ken; Debnath, Jayanta 2018 2018-03-05 NONCOMM N PMC5839790 29237720.0 10.1083/jcb.201706157 s1qd3x1b 0.317157 Lester_2014, Postigo_2009, Shi_J_2012, Kim_S_2018, Jang_2019 Rey-Jurado_2015, Lin_L_2010, Jacomin_2018, Schmid_2007
833 Wu_B_2009 A Discontinuous RNA Platform Mediates RNA Virus Replication: Building an Integrated Model for RNA–based Regulation of Viral Processes Wu, Baodong; Pogany, Judit; Na, Hong; Nicholson, Beth L.; Nagy, Peter D.; White, K. Andrew 2009 2009-03-06 COMM-USE N PMC2648310 19266082.0 10.1371/journal.ppat.1000323 tx5ff5gk 0.316713 Rice_1992, Stork_2011, den_Boon_2010, Trobaugh_2017 Bhullar_2014
834 Mayank_2015 Nucleoprotein of influenza A virus negatively impacts antiapoptotic protein API5 to enhance E2F1-dependent apoptosis and virus replication Mayank, A K; Sharma, S; Nailwal, H; Lal, S K 2015 2015-12-17 COMM-USE N PMC4720893 26673663.0 10.1038/cddis.2015.360 tkmmh5wk 0.316410 Ban_J_2018, Trobaugh_2017, Greene_2012, Berkhout_2006, Aweya_2015 Aweya_2013
835 Curran_1991 Characterization of the Sendai virus V protein with an anti-peptide antiserum Curran, Joseph; De Melo, Merivane; Moyer, Sue; Kolakofsky, Daniel 1991 1991-09-30 PMC N PMC7130646 1651586.0 10.1016/0042-6822(91)90827-x c0jkyvnc 0.315840 Volmer_2010, Kang_2009, UNKNOWN_1987, Shi_S_2000 Meulenberg_1995, Goldberg_1991
836 Palangi_2017 Effects of oxidative and thermal stresses on stress granule formation in human induced pluripotent stem cells Palangi, Freshteh; Samuel, Samson M.; Thompson, I. Richard; Triggle, Chris R.; Emara, Mohamed M. 2017 2017-07-26 COMM-USE N PMC5528897 28746394.0 10.1371/journal.pone.0182059 riwplymp 0.315810 Blank_2017, Stoecklin_2012, Haasnoot_2010, Volmer_2010, Trobaugh_2017 Song_2009
837 Ivanyi-Nagy_2012 Reprint of: Core protein-mediated 5′–3′ annealing of the West Nile virus genomic RNA in vitro Ivanyi-Nagy, Roland; Darlix, Jean-Luc 2012 2012-11-30 PMC N 10.1016/j.virusres.2012.09.009 dv6aak01 0.315808 Stork_2011, Pong_2011, Rice_1992, Yasuda-Inoue_2013, Meyerson_2017
838 Aweya_2015 NS5B induces up-regulation of the BH3-only protein, BIK, essential for the hepatitis C virus RNA replication and viral release Aweya, Jude Juventus; Sze, Ching Wooen; Bayega, Anthony; Mohd-Ismail, Nur Khairiah; Deng, Lin; Hotta, Hak; Tan, Yee-Joo 2015 2015-01-01 None N PMC7127593 25463603.0 10.1016/j.virol.2014.10.027 kqt43xo0 0.314812 Ban_J_2018, Meyerson_2017, Yasuda-Inoue_2013, Liu_H_2009 Aweya_2013, Liu_H_2009, Neufeldt_2016
839 Dinman_1998 Translating old drugs into new treatments: ribosomal frameshifting as a target for antiviral agents Dinman, Jonathan D; Ruiz-Echevarria, Maria J; Peltz, Stuart W 1998 1998-04-01 PMC N PMC7127214 9586242.0 10.1016/s0167-7799(97)01167-0 wqi4z0ne 0.314809 Rice_1992, Trobaugh_2017, Stork_2011, Gaucherand_2019 Drappier_2015, Kwong_2005
840 Clark_2016 Chapter 21 Viral and Prion Infections Clark, David P.; Pazdernik, Nanette J. 2016 2016-12-31 PMC N 10.1016/b978-0-12-385015-7.00021-1 y105n25z 0.314809 Lu_P_2016, Rice_1992, Brucker_2020, Mack_2007
841 Zhao_2015 The DEAD-box RNA helicase 5 positively regulates the replication of porcine reproductive and respiratory syndrome virus by interacting with viral Nsp9 in vitro Zhao, Shuangcheng; Ge, Xinna; Wang, Xiaolong; Liu, Aijing; Guo, Xin; Zhou, Lei; Yu, Kangzhen; Yang, Hanchun 2015 2015-01-02 PMC N PMC7114378 25449571.0 10.1016/j.virusres.2014.10.021 syh53l6q 0.314680 Yasuda-Inoue_2013, Li_C_2013, Ban_J_2018, Meyerson_2017, Liu_H_2009 Dong_2014
842 Zhou_2017 Ultrastructural Characterization of Membrane Rearrangements Induced by Porcine Epidemic Diarrhea Virus Infection Zhou, Xingdong; Cong, Yingying; Veenendaal, Tineke; Klumperman, Judith; Shi, Dongfang; Mari, Muriel; Reggiori, Fulvio 2017 2017-09-05 COMM-USE N PMC5618017 28872588.0 10.3390/v9090251 g1oqvc5i 0.314506 Volmer_2010, den_Boon_2010, Terrier_2016, Compton_2014, Stertz_2007 Doyle_2018, Effantin_2016
843 Aweya_2013 The p7 protein of the hepatitis C virus induces cell death differently from the influenza A virus viroporin M2 Aweya, Jude Juventus; Mak, Tze Minn; Lim, Seng Gee; Tan, Yee-Joo 2013 2013-03-31 PMC N PMC7114515 23246447.0 10.1016/j.virusres.2012.12.005 5wiyjvrc 0.314506 Ban_J_2018, Greene_2012, Volmer_2010, Aweya_2015, Meyerson_2017 Zhang_2015, Yuan_2016
844 UNKNOWN_1995 Envelope glycoprotein interactions in coronavirus assembly None 1995 1995-10-02 NONCOMM N PMC2199982 7593163.0 b9xvycyk 0.314276 UNKNOWN_1995, Volmer_2010, Narayanan_2003, Hobman_1993, Gomis-Rüth_2003 Niemann_1982
845 Matos-Perdomo_2019 Nucleolar and Ribosomal DNA Structure under Stress: Yeast Lessons for Aging and Cancer Matos-Perdomo, Emiliano; Machín, Félix 2019 2019-07-26 COMM-USE N PMC6721496 31357498.0 10.3390/cells8080779 8942b94u 0.314272 Dubois_2016, Berkhout_2006, Taschuk_2020, Brown_2008, Blank_2017 Sirri_2007, Wulan_2015
846 Guise_2013 Histone Deacetylases in Herpesvirus Replication and Virus-Stimulated Host Defense Guise, Amanda J.; Budayeva, Hanna G.; Diner, Benjamin A.; Cristea, Ileana M. 2013 2013-06-27 COMM-USE N PMC3738950 23807710.0 10.3390/v5071607 h9ayg6vf 0.314257 Shi_J_2012, Berkhout_2006, Trobaugh_2017, Lester_2014 Watanabe_2019, Deng_2019
847 Guan_2010 Interaction of Hsp40 with influenza virus M2 protein: implications for PKR signaling pathway Guan, Zhenhong; Liu, Di; Mi, Shuofu; Zhang, Jie; Ye, Qinong; Wang, Ming; Gao, George F.; Yan, Jinghua 2010 2010-10-01 PMC N PMC4875119 21204021.0 10.1007/s13238-010-0115-x 8x83dx6k 0.314086 Ban_J_2018, Meyerson_2017, Kumar_2016, Volmer_2010, Compton_2014 Zhang_2015, Aweya_2013
848 Valli_2012 The VP3 Factor from Viruses of Birnaviridae Family Suppresses RNA Silencing by Binding Both Long and Small RNA Duplexes Valli, Adrian; Busnadiego, Idoia; Maliogka, Varvara; Ferrero, Diego; Castón, José R.; Rodríguez, José Francisco; García, Juan Antonio 2012 2012-09-25 COMM-USE N PMC3458112 23049903.0 10.1371/journal.pone.0045957 bulxer8k 0.313845 Rice_1992, Stork_2011, Yasuda-Inoue_2013, Meyerson_2017, den_Boon_2010 Case_2017, Masante_2015
849 Hossain_2020 Impact of the Interaction of Hepatitis B Virus with Mitochondria and Associated Proteins Hossain, Md. Golzar; Akter, Sharmin; Ohsaki, Eriko; Ueda, Keiji 2020 2020-02-04 COMM-USE N PMC7077294 32033216.0 10.3390/v12020175 6qoewbf1 0.313523 Trobaugh_2017, Berkhout_2006, Klein_2011, Haasnoot_2010, Mao_J_2019 Matsumoto_2013, Elizalde_2017, Zhou_2012
850 Chen_2008 Proteasome inhibition reduces avian reovirus replication and apoptosis induction in cultured cells Chen, Yu T.; Lin, Chi H.; Ji, Wen T.; Li, Shu K.; Liu, Hung J. 2008 2008-07-31 PMC N PMC7119659 18455810.0 10.1016/j.jviromet.2008.03.016 jc4ckqy7 0.312992 Meyerson_2017, Ban_J_2018, Aweya_2015, Liu_J_2007 Liu_J_2007, Yuan_2016
851 PUMFERY_2008 Chapter 15 Proteomics of viruses PUMFERY, ANNE; BERRO, REEM; KASHANCHI, FATAH 2008 2008-12-31 PMC N PMC7151880 10.1016/b978-044451980-1.50017-3 9dyh8bj2 0.312448 Potgieter_1986, Trobaugh_2017, Rice_1992, Berkhout_2006, Haasnoot_2010 Zhang_2015, Henmi_2005, van_der_Linden_2014
852 Chan_2016 Viral evasion of intracellular DNA and RNA sensing Chan, Ying Kai; Gack, Michaela U. 2016 2016-05-13 None N PMC5072394 27174148.0 10.1038/nrmicro.2016.45 kc19m3o7 0.312432 Lester_2014, Dixit_2013, Viswanathan_2010, Loo_Y_2011, Kindler_2014 Schlee_2013
853 Königs_2020 SRSF7 maintains its homeostasis through the expression of Split-ORFs and nuclear body assembly Königs, Vanessa; de Oliveira Freitas Machado, Camila; Arnold, Benjamin; Blümel, Nicole; Solovyeva, Anfisa; Löbbert, Sinah; Schafranek, Michal; Ruiz De Los Mozos, Igor; Wittig, Ilka; McNicoll, Francois; Schulz, Marcel H.; Müller-McNicoll, Michaela 2020 2020-03-02 PMC N PMC7096898 32123389.0 10.1038/s41594-020-0385-9 0dab3c2u 0.312432 Blank_2017, Ivanova_2015, Yasuda-Inoue_2013, Abernathy_2015 Sasvari_2011, Choudhury_2017
854 Cottam_2014 Coronavirus NSP6 restricts autophagosome expansion Cottam, Eleanor M; Whelband, Matthew C; Wileman, Thomas 2014 2014-08-01 NONCOMM N PMC4203519 24991833.0 10.4161/auto.29309 c5ukw8su 0.312089 Greene_2012, Volmer_2010, Ban_J_2018, Meyerson_2017, Compton_2014 Ding_2017, Chen_2014
855 Laneve_2017 Drosophila CG3303 is an essential endoribonuclease linked to TDP-43-mediated neurodegeneration Laneve, Pietro; Piacentini, Lucia; Casale, Assunta Maria; Capauto, Davide; Gioia, Ubaldo; Cappucci, Ugo; Di Carlo, Valerio; Bozzoni, Irene; Di Micco, Patrizio; Morea, Veronica; Di Franco, Carmela Antonia; Caffarelli, Elisa 2017 2017-01-31 COMM-USE N PMC5282483 28139767.0 10.1038/srep41559 1rw05x6m 0.311927 Berkhout_2006, Haasnoot_2010, Trobaugh_2017, Atianand_2014, Taschuk_2020 Deng_2019, Michalska_2018
856 Decroly_2011 Conventional and unconventional mechanisms for capping viral mRNA Decroly, Etienne; Ferron, François; Lescar, Julien; Canard, Bruno 2011 2011-12-05 PMC N PMC7097100 22138959.0 10.1038/nrmicro2675 a08rw6bp 0.311723 Stork_2011, Yasuda-Inoue_2013, Rice_1992, Herbert_2016, Trobaugh_2017 Chen_2016, Byszewska_2015, Gopinath_2015, Bhullar_2014
857 Zhang_2015 The UPR Branch IRE1-bZIP60 in Plants Plays an Essential Role in Viral Infection and Is Complementary to the Only UPR Pathway in Yeast Zhang, Lingrui; Chen, Hui; Brandizzi, Federica; Verchot, Jeanmarie; Wang, Aiming 2015 2015-04-15 COMM-USE N PMC4398384 25875739.0 10.1371/journal.pgen.1005164 idvl94b3 0.311183 Blank_2017, Choi_2020, Berkhout_2006, Martín-Vicente_2017 Sasvari_2011, van_Zuylen_2012, Yan_J_2020
858 Wang_2010 Nsp1 proteins of group I and SARS coronaviruses share structural and functional similarities Wang, Yongjin; Shi, Huiling; Rigolet, Pascal; Wu, Nannan; Zhu, Lichen; Xi, Xu-Guang; Vabret, Astrid; Wang, Xiaoming; Wang, Tianhou 2010 2010-10-31 PMC N PMC7106014 20609418.0 10.1016/j.meegid.2010.05.014 3eatplc2 0.310977 Ban_J_2018, Meyerson_2017, Dixit_2013, Rice_1992 Narayanan_2015, Kumar_2007, Du_L_2007
859 Li_J_2020 Virus-host interactome and proteomic survey of PMBCs from COVID-19 patients reveal potential virulence factors influencing SARS-CoV-2 pathogenesis Jingjiao Li; Mingquan Guo; Xiaoxu Tian; Chengrong Liu; Xin Wang; Xing Yang; Ping Wu; Zixuan Xiao; Yafei Qu; Yue Yin; Joyce Fu; Zhaoqin Zhu; Zhenshan Liu; Chao Peng; Tongyu Zhu; Qiming Liang 2020 2020-04-02 BioRxiv Y 10.1101/2020.03.31.019216 zbp8jzbe 0.310246 Berkhout_2006, Trobaugh_2017, Shi_J_2012, Haasnoot_2010, Lester_2014 Niemeyer_2018, Narayanan_2015, Rockx_2020, Wu_F_2020
860 Xiao_2008 Coronavirus Spike Protein Inhibits Host Cell Translation by Interaction with eIF3f Xiao, Han; Xu, Ling Hui; Yamada, Yoshiyuki; Liu, Ding Xiang 2008 2008-01-30 COMM-USE N PMC2204050 18231581.0 10.1371/journal.pone.0001494 gstpi4mw 0.309572 Ban_J_2018, Trobaugh_2017, Volmer_2010, Meyerson_2017, Haasnoot_2010 Zhang_2015, Wang_2009
861 Andréola_2012 Yeast and the AIDS Virus: The Odd Couple Andréola, Marie-Line; Litvak, Simon 2012 2012-06-17 PMC N PMC3385842 22778552.0 10.1155/2012/549020 rt0uxy1d 0.309227 Berkhout_2006, Rice_1992, Volmer_2010, Haasnoot_2010, Francis_2016 Sun_D_2016, Ao_D_2015
862 Halder_2017 Review of computational methods for virus–host protein interaction prediction: a case study on novel Ebola–human interactions Halder, Anup Kumar; Dutta, Pritha; Kundu, Mahantapas; Basu, Subhadip; Nasipuri, Mita 2017 2017-09-26 PMC N PMC7109800 29028879.0 10.1093/bfgp/elx026 72vya0vu 0.309094 Berkhout_2006, Trobaugh_2017, Rice_1992, Haasnoot_2010, Naito_2007 Goodacre_2020, Han_L_2017, Li_Z_2019, Durmuş_2017
863 Josset_2014 Noncoding RNA Expression During Viral Infection: The Long and the Short of It Josset, Laurence; Tisoncik-Go, Jennifer; Katze, Michael G. 2014 2014-11-05 PMC N PMC7123390 10.1007/978-3-319-13689-9_6 0xvfis28 0.309094 Trobaugh_2017, Lester_2014, Potgieter_1986, Haasnoot_2010 Trypsteen_2016, Lamsisi_2020, Narayanan_2015
864 Blanchard_2018 The Hepatitis C Virus-Induced Membranous Web in Liver Tissue Blanchard, Emmanuelle; Roingeard, Philippe 2018 2018-11-01 COMM-USE N PMC6262270 30388825.0 10.3390/cells7110191 wowuxw6o 0.308790 Volmer_2010, den_Boon_2010, Compton_2014, Terrier_2016, Trobaugh_2017 Neufeldt_2016, Ferraris_2012
865 Cho_W_2012 Genome-wide expression profiling shows transcriptional reprogramming in Fusarium graminearum by Fusarium graminearum virus 1-DK21 infection Cho, Won Kyong; Yu, Jisuk; Lee, Kyung-Mi; Son, Moonil; Min, Kyunghun; Lee, Yin-Won; Kim, Kook-Hyung 2012 2012-05-06 COMM-USE N PMC3478160 22559730.0 10.1186/1471-2164-13-173 kf9m4zho 0.307577 Berkhout_2006, Trobaugh_2017, Haasnoot_2010, Herbert_2016, Abernathy_2015 Wu_H_2004, Thibivilliers_2009, Ma_Q_2010
866 Di_Russo_Case_2013 The Francisella O-antigen mediates survival in the macrophage cytosol via autophagy avoidance Di Russo Case, Elizabeth; Chong, Audrey; Wehrly, Tara D.; Hansen, Bryan; Child, Robert; Hwang, Seungmin; Virgin, Herbert W.; Celli, Jean 2013 2013-12-16 PMC N PMC4028363 24286610.0 10.1111/cmi.12246 5y1k842n 0.307534 Greene_2012, Volmer_2010, Engström_2019, Viswanathan_2010 Ding_2017
867 Osterman_2015 The Hepatitis E virus intraviral interactome Osterman, Andreas; Stellberger, Thorsten; Gebhardt, Anna; Kurz, Marisa; Friedel, Caroline C.; Uetz, Peter; Nitschko, Hans; Baiker, Armin; Vizoso-Pinto, Maria G. 2015 2015-10-14 COMM-USE N PMC4604457 26463011.0 10.1038/srep13872 2udvddt7 0.307518 Pong_2011, den_Boon_2010, Stork_2011, Yasuda-Inoue_2013, Kang_2009 Popescu_2011, Valle-Casuso_2020, Sun_D_2016
868 Alhatlani_2015 Functions of the 5′ and 3′ ends of calicivirus genomes Alhatlani, Bader; Vashist, Surender; Goodfellow, Ian 2015 2015-08-03 None N PMC4509552 25678268.0 10.1016/j.virusres.2015.02.002 5658ruj9 0.307397 Rice_1992, Wang_2018, den_Boon_2010, Trobaugh_2017 Sun_D_2016, Tzeng_2006, Gutiérrez-Escolano_2003
869 Albert_2018 ISG15, a Small Molecule with Huge Implications: Regulation of Mitochondrial Homeostasis Albert, Manuel; Bécares, Martina; Falqui, Michela; Fernández-Lozano, Carlos; Guerra, Susana 2018 2018-11-13 COMM-USE N PMC6265978 30428561.0 10.3390/v10110629 v2dr4hm0 0.306969 Shi_J_2012, Berkhout_2006, Trobaugh_2017, Haasnoot_2010, Taschuk_2020 Li_Z_2019, Morales_2013
870 Krejbich-Trotot_2011 Chikungunya triggers an autophagic process which promotes viral replication Krejbich-Trotot, Pascale; Gay, Bernard; Li-Pat-Yuen, Ghislaine; Hoarau, Jean-Jacques; Jaffar-Bandjee, Marie-Christine; Briant, Laurence; Gasque, Philippe; Denizot, Mélanie 2011 2011-09-08 COMM-USE N PMC3179960 21902836.0 10.1186/1743-422x-8-432 5pxat7b4 0.306862 Berkhout_2006, Trobaugh_2017, Volmer_2010, Shi_J_2012, Klein_2011 Ding_2017, Hsieh_2013
871 Meliopoulos_2012 Host gene targets for novel influenza therapies elucidated by high-throughput RNA interference screens Meliopoulos, Victoria A.; Andersen, Lauren E.; Birrer, Katherine F.; Simpson, Kaylene J.; Lowenthal, John W.; Bean, Andrew G. D.; Stambas, John; Stewart, Cameron R.; Tompkins, S. Mark; van Beusechem, Victor W.; Fraser, Iain; Mhlanga, Musa; Barichievy, Samantha; Smith, Queta; Leake, Devin; Karpilow, Jon; Buck, Amy; Jona, Ghil; Tripp, Ralph A. 2012 2012-01-12 PMC N PMC3316894 22247330.0 10.1096/fj.11-193466 g6j79d6v 0.306675 Berkhout_2006, Rice_1992, Potgieter_1986, Ryu_W_2017 Anderson_2020, Krumm_2011
872 Hernandez-Alias_2020 Translational adaptation of human viruses to the tissues they infect Xavier Hernandez-Alias; Martin Schaefer; Luis Serrano 2020 2020-04-07 BioRxiv Y 10.1101/2020.04.06.027557 0rk2dw4e 0.306526 Trobaugh_2017, Rice_1992, Volmer_2010, Berkhout_2006
873 Munday_2010 Quantitative proteomic analysis of A549 cells infected with human respiratory syncytial virus subgroup B using SILAC coupled to LC‐MS/MS C. Munday, Diane; Hiscox, Julian A.; Barr, John N. 2010 2010-11-26 PMC N PMC7167978 21110324.0 10.1002/pmic.201000228 c2fynyq8 0.305548 Volmer_2010, Trobaugh_2017, Auewarakul_2005, Rice_1992, Haasnoot_2010
874 Loureiro_2019 Virus–Host Interactions Involved in Lassa Virus Entry and Genome Replication Loureiro, María Eugenia; D’Antuono, Alejandra; López, Nora 2019 2019-01-29 COMM-USE N PMC6470645 30699976.0 10.3390/pathogens8010017 pyfbzyxp 0.305544 Lu_P_2016, Potgieter_1986, Ryu_W_2017, Weaver_2004, Tallmadge_2008 McLay_2013, Terasaki_2016, Valle-Casuso_2020, Narayanan_2015
875 Chen_2014 Coronavirus membrane-associated papain-like proteases induce autophagy through interacting with Beclin1 to negatively regulate antiviral innate immunity Chen, Xiaojuan; Wang, Kai; Xing, Yaling; Tu, Jian; Yang, Xingxing; Zhao, Qian; Li, Kui; Chen, Zhongbin 2014 2014-10-15 PMC N PMC4259884 25311841.0 10.1007/s13238-014-0104-6 puxz2f9g 0.305282 Ban_J_2018, Greene_2012, Martín-Vicente_2017, Dixit_2013 Ding_2017, Ávila-Pérez_2019
876 Yan_B_2019 Characterization of the Lipidomic Profile of Human Coronavirus-Infected Cells: Implications for Lipid Metabolism Remodeling upon Coronavirus Replication Yan, Bingpeng; Chu, Hin; Yang, Dong; Sze, Kong-Hung; Lai, Pok-Man; Yuan, Shuofeng; Shuai, Huiping; Wang, Yixin; Kao, Richard Yi-Tsun; Chan, Jasper Fuk-Woo; Yuen, Kwok-Yung 2019 2019-01-16 COMM-USE N PMC6357182 30654597.0 10.3390/v11010073 rgrt6e6r 0.304997 Lu_P_2016, Yasui_2016, Potgieter_1986, Tallmadge_2008, Ban_J_2018 Benej_2019, Yan_B_2019, Mingorance_2018
877 Pryzdial_2017 Virus–Platelet Associations Pryzdial, Edward L. G.; Lin, Bryan H.; Sutherland, Michael R. 2017 2017-02-11 PMC N PMC7121037 10.1007/978-3-319-47462-5_72 fi01ffoj 0.304488 Mao_J_2019, Lester_2014, Berkhout_2006, Anand_2019, Potgieter_1986 Rott_1987, Ma_G_2004, Ansuini_2013, Phares_2013
878 Basak_2007 Reviewing Chandipura: A Vesiculovirus in Human Epidemics Basak, Soumen; Mondal, Arindam; Polley, Smarajit; Mukhopadhyay, Subhradip; Chattopadhyay, Dhrubajyoti 2007 2007-07-04 PMC N PMC7087735 17610154.0 10.1007/s10540-007-9054-z vwrbk5aw 0.304058 Ryu_W_2017, Lu_P_2016, Tallmadge_2008, Rice_1992, den_Boon_2010 Valle-Casuso_2020, Jung_2019, Wu_H_2016, Pastorino_2008
879 Koonin_2013 A virocentric perspective on the evolution of life Koonin, Eugene V; Dolja, Valerian V 2013 2013-10-31 None N PMC4326007 23850169.0 10.1016/j.coviro.2013.06.008 kjyuxc3g 0.304058 Wang_2018, den_Boon_2010, Rice_1992, Berkhout_2006, Trobaugh_2017 Wulan_2015, Rodríguez_2020, Walker_2011
880 Stertz_2007 The intracellular sites of early replication and budding of SARS-coronavirus Stertz, Silke; Reichelt, Mike; Spiegel, Martin; Kuri, Thomas; Martínez-Sobrido, Luis; García-Sastre, Adolfo; Weber, Friedemann; Kochs, Georg 2007 2007-05-10 None N PMC7103305 17210170.0 10.1016/j.virol.2006.11.027 uw2a8uwj 0.304058 Volmer_2010, UNKNOWN_1995, Quiner_2010, den_Boon_2010
881 Sokoloski_2017 Identification of Interactions between Sindbis Virus Capsid Protein and Cytoplasmic vRNA as Novel Virulence Determinants Sokoloski, Kevin J.; Nease, Lauren M.; May, Nicholas A.; Gebhart, Natasha N.; Jones, Claire E.; Morrison, Thomas E.; Hardy, Richard W. 2017 2017-06-29 COMM-USE N PMC5507600 28662211.0 10.1371/journal.ppat.1006473 zn7tm1ww 0.303168 Rice_1992, den_Boon_2010, Stork_2011, Meyerson_2017, Kang_2009 Zhang_2015, Popescu_2011, Wulan_2015
882 Weiss_2011 Chapter 4 Coronavirus Pathogenesis Weiss, Susan R.; Leibowitz, Julian L. 2011 2011-12-31 PMC N PMC7149603 22094080.0 10.1016/b978-0-12-385885-6.00009-2 ugv21b9b 0.302990 Potgieter_1986, Trobaugh_2017, Rice_1992, Berkhout_2006, Haasnoot_2010 Sims_2008, Hayasaka_2013, Park_2007, Tanaka_2013
883 Liu_Y_2015 The Roles of Direct Recognition by Animal Lectins in Antiviral Immunity and Viral Pathogenesis Liu, Yang; Liu, Jianying; Pang, Xiaojing; Liu, Tao; Ning, Zhijie; Cheng, Gong 2015 2015-01-29 COMM-USE N PMC6272511 25642837.0 10.3390/molecules20022272 npug5c8p 0.302979 Lester_2014, Kindler_2014, Taschuk_2020, Bermejo-Jambrina_2018, Berkhout_2006 Lee_C_2019, Vigerust_2011, Mishra_2019
884 Ryan_2016 Activation of the DNA Damage Response by RNA Viruses Ryan, Ellis L.; Hollingworth, Robert; Grand, Roger J. 2016 2016-01-06 COMM-USE N PMC4808796 26751489.0 10.3390/biom6010002 t1lxtox3 0.302748 Trobaugh_2017, Berkhout_2006, den_Boon_2010, Shi_J_2012, Herbert_2016 Chemudupati_2019, Bagga_2014, Galluzzi_2008
885 Wang_2014 Dynamic RNA Modifications in Posttranscriptional Regulation Wang, Xiao; He, Chuan 2014 2014-10-02 PMC N PMC7129666 25280100.0 10.1016/j.molcel.2014.09.001 vqw0jdcl 0.302451 Trobaugh_2017, Haasnoot_2010, Atianand_2014, Moon_2012 Byszewska_2015, Järvelin_2016, Gopinath_2015
886 Yang_2012 Phosphatidylinositol 4-Kinase IIIβ Is Required for Severe Acute Respiratory Syndrome Coronavirus Spike-mediated Cell Entry Yang, Ning; Ma, Ping; Lang, Jianshe; Zhang, Yanli; Deng, Jiejie; Ju, Xiangwu; Zhang, Gongyi; Jiang, Chengyu 2012 2012-01-17 PMC N PMC3318727 22253445.0 10.1074/jbc.m111.312561 1i12ff55 0.302400 Kumar_2016, Greene_2012, Ban_J_2018, Meyerson_2017, Li_C_2014 Du_L_2007, Diemer_2008
887 Nemésio_2014 Membrane Interacting Regions of Dengue Virus NS2A Protein Nemésio, Henrique; Villalaín, José 2014 2014-08-13 PMC N PMC4148155 25119664.0 10.1021/jp504911r mzcvilbw 0.302400 Volmer_2010, UNKNOWN_1987, Ivarsson_2012, Cosson_2013, UNKNOWN_1993 Kanjanahaluethai_2007, Voß_D_2009, Guillén_2009, León-Juárez_2016
888 Emonet_2011 Arenavirus reverse genetics: New approaches for the investigation of arenavirus biology and development of antiviral strategies Emonet, Sebastien E.; Urata, Shuzo; de la Torre, Juan C. 2011 2011-03-15 PMC N PMC3057228 21324503.0 10.1016/j.virol.2011.01.013 lt8j5wjs 0.302115 Lu_P_2016, Brucker_2020, Fauci_2006, Ryu_W_2017, Weaver_2004 McLay_2013, Mantlo_2019, de_la_Torre_2008, Emonet_2009
889 Hussey_2009 Autophagy as an emerging dimension to adaptive and innate immunity Hussey, Séamus; Travassos, Leonardo H.; Jones, Nicola L. 2009 2009-08-31 PMC N PMC7129798 19502083.0 10.1016/j.smim.2009.05.004 h0knm8y4 0.302115 Jang_2019, Shi_J_2012, Lester_2014, Kim_S_2018 Schmid_2007, Lee_H_2008, Rey-Jurado_2015, Levine_2007
890 Shah_Mahmud_2018 Bacterial ribonuclease binase exerts an intra-cellular anti-viral mode of action targeting viral RNAs in influenza a virus-infected MDCK-II cells Shah Mahmud, Raihan; Mostafa, Ahmed; Müller, Christin; Kanrai, Pumaree; Ulyanova, Vera; Sokurenko, Yulia; Dzieciolowski, Julia; Kuznetsova, Irina; Ilinskaya, Olga; Pleschka, Stephan 2018 2018-01-05 COMM-USE N PMC5756404 29304825.0 10.1186/s12985-017-0915-1 zc54wofq 0.301875 Meyerson_2017, Rice_1992, Stork_2011, Volmer_2010, Tallmadge_2008
891 Elwell_2011 Chlamydia trachomatis Co-opts GBF1 and CERT to Acquire Host Sphingomyelin for Distinct Roles during Intracellular Development Elwell, Cherilyn A.; Jiang, Shaobo; Kim, Jung Hwa; Lee, Albert; Wittmann, Torsten; Hanada, Kentaro; Melancon, Paul; Engel, Joanne N. 2011 2011-09-01 COMM-USE N PMC3164637 21909260.0 10.1371/journal.ppat.1002198 h35iocue 0.301875 UNKNOWN_1995, Greene_2012, Jonker_2018, Weissenhorn_2013 Yang_2019, Salcedo_2003
892 Venkatagopalan_2015 Coronavirus envelope (E) protein remains at the site of assembly Venkatagopalan, Pavithra; Daskalova, Sasha M.; Lopez, Lisa A.; Dolezal, Kelly A.; Hogue, Brenda G. 2015 2015-04-30 PMC N PMC4550588 25726972.0 10.1016/j.virol.2015.02.005 rl483cg9 0.301660 UNKNOWN_1995, Volmer_2010, Wang_2013, UNKNOWN_1993, UNKNOWN_1993 UNKNOWN_1991, Niemann_1982
893 Huang_2018 Ubiquitin–Proteasome System Is Required for Efficient Replication of Singapore Grouper Iridovirus Huang, Xiaohong; Wei, Shina; Ni, Songwei; Huang, Youhua; Qin, Qiwei 2018 2018-11-26 COMM-USE N PMC6275174 30534113.0 10.3389/fmicb.2018.02798 nypzyx8x 0.301445 Greene_2012, Ban_J_2018, Meyerson_2017, Trobaugh_2017, Berkhout_2006 Si_X_2008, Sun_D_2016
894 Mushegian_2018 Sequence analysis of malacoherpesvirus proteins: Pan-herpesvirus capsid module and replication enzymes with an ancient connection to “Megavirales” Mushegian, Arcady; Karin, Eli Levy; Pupko, Tal 2018 2018-01-01 PMC N 29065352.0 10.1016/j.virol.2017.10.009 elmqg45v 0.300603 den_Boon_2010, Rice_1992, Ryu_W_2017, Gorbalenya_1988
895 Ehrhardt_2009 A new player in a deadly game: influenza viruses and the PI3K/Akt signalling pathway Ehrhardt, Christina; Ludwig, Stephan 2009 2009-03-12 PMC N PMC7162392 19290913.0 10.1111/j.1462-5822.2009.01309.x 4i2ssdp3 0.300493 Kumar_2016, Ban_J_2018, Lin_L_2019, Siu_Y_2008, Fung_2017
896 Stork_2011 RNA chaperone activity of the tombusviral p33 replication protein facilitates initiation of RNA synthesis by the viral RdRp in vitro Stork, Jozsef; Kovalev, Nikolay; Sasvari, Zsuzsanna; Nagy, Peter D. 2011 2011-01-20 PMC N 21071052.0 10.1016/j.virol.2010.10.015 x8pkgsk1 0.300452 Yasuda-Inoue_2013, Pong_2011, Rice_1992, Meyerson_2017
897 Wang_2017 Enterovirus 71 protease 2A(pro) and 3C(pro) differentially inhibit the cellular endoplasmic reticulum-associated degradation (ERAD) pathway via distinct mechanisms, and enterovirus 71 hijacks ERAD component p97 to promote its replication Wang, Tao; Wang, Bei; Huang, He; Zhang, Chongyang; Zhu, Yuanmei; Pei, Bin; Cheng, Chaofei; Sun, Lei; Wang, Jianwei; Jin, Qi; Zhao, Zhendong 2017 2017-10-06 COMM-USE N PMC5650186 28985237.0 10.1371/journal.ppat.1006674 whbkh30a 0.300339 Greene_2012, Ban_J_2018, UNKNOWN_1995, Hurley_2014, Meyerson_2017 Yan_J_2020