Topic 35 -- Abstracts with Biological Entities (English) - 75 Topics

cite ad title authors publish year publish time dataset abstract mentions covid pmcid pubmed id doi cord uid topic weight Similarity scispacy Similarity specter
1 Yang_2013 Selection of reference genes for quantitative real-time PCR analysis in chicken embryo fibroblasts infected with avian leukosis virus subgroup J Yang, Falong; Lei, Xiaowen; Rodriguez-Palacios, Alexander; Tang, Cheng; Yue, Hua 2013 2013-10-07 COMM-USE N PMC3851545 24099561.0 10.1186/1756-0500-6-402 w0nl88jz 0.881491 Meng_2006, Wang_2007, Wang_2009, Brake_2008 Yue_H_2010, Ren_X_2008
2 Samiullah_2017 Reference gene selection for the shell gland of laying hens in response to time-points of eggshell formation and nicarbazin Samiullah, Sami; Roberts, Juliet; Wu, Shu-Biao 2017 2017-07-03 COMM-USE N PMC5495395 28671969.0 10.1371/journal.pone.0180432 chq0vvrr 0.880015 Zhou_2014, Wang_2007, Salem_2014, Krause_1987 Khan_2017, Thibivilliers_2009, Bansal_2012, Olsvik_2008
3 Kaur_2018 Selection of suitable reference genes for normalization of quantitative RT-PCR (RT-qPCR) expression data across twelve tissues of riverine buffaloes (Bubalus bubalis) Kaur, Ramneek; Sodhi, Monika; Sharma, Ankita; Sharma, Vijay Lakshmi; Verma, Preeti; Swami, Shelesh Kumar; Kumari, Parvesh; Mukesh, Manishi 2018 2018-03-06 COMM-USE N PMC5839537 29509770.0 10.1371/journal.pone.0191558 agvkqpt7 0.832317 Samiullah_2017, Zhou_2014, Wang_2007, Salem_2014 Olsvik_2008, Peña_2010, Olsvik_2005, Sahu_2018
4 Khan_2017 Reference gene selection for gene expression study in shell gland and spleen of laying hens challenged with infectious bronchitis virus Khan, Samiullah; Roberts, Juliet; Wu, Shu-Biao 2017 2017-10-27 COMM-USE N PMC5660252 29079779.0 10.1038/s41598-017-14693-2 bkax1pz1 0.817390 Wang_2007, Zhou_2014, Samiullah_2017, Callison_1999 Samiullah_2017, Ren_X_2008, Wu_H_2004, Thibivilliers_2009
5 Boltaña_2016 Long noncoding RNAs (lncRNAs) dynamics evidence immunomodulation during ISAV-Infected Atlantic salmon (Salmo salar) Boltaña, Sebastian; Valenzuela-Miranda, Diego; Aguilar, Andrea; Mackenzie, Simon; Gallardo-Escárate, Cristian 2016 2016-03-04 COMM-USE N PMC4778034 26939752.0 10.1038/srep22698 utjug06y 0.816625 Trobaugh_2017, Haasnoot_2010, Herbert_2016, Auewarakul_2005, Wang_2018 Liui_2020, Trypsteen_2016, Lai_C_2019, Liu_W_2018
6 Salem_2014 Verifying the Stability of Selected Genes for Normalization in Q PCR Experiments of Spodoptera frugiperda Cells during AcMNPV Infection Salem, Tamer Z.; Allam, Walaa R.; Thiem, Suzanne M. 2014 2014-10-14 COMM-USE N PMC4196776 25313905.0 10.1371/journal.pone.0108516 sng9h1kq 0.795507 Wang_2007, Krause_1987, Lamb_1991, Meng_2006 Bansal_2012, Olsvik_2008, Li_Q_2012
7 Li_Q_2012 Evaluation of reference genes for real-time quantitative PCR studies in Candida glabrata following azole treatment Li, Qingdi Quentin; Skinner, Jeff; Bennett, John E 2012 2012-06-29 COMM-USE N PMC3482582 22747760.0 10.1186/1471-2199-13-22 whm2ce4u 0.790027 Wang_2007, Zhou_2014, Samiullah_2017, Brake_2008, Salem_2014 Salem_2014, Olsvik_2008, Peña_2010
8 Olsvik_2005 Evaluation of potential reference genes in real-time RT-PCR studies of Atlantic salmon Olsvik, Pål A; Lie, Kai K; Jordal, Ann-Elise O; Nilsen, Tom O; Hordvik, Ivar 2005 2005-11-17 COMM-USE N PMC1314898 16293192.0 10.1186/1471-2199-6-21 1r65yam5 0.783747 Wang_2007, Krause_1987, Zhou_2014, Francis_2016, Salem_2014 Olsvik_2008, Peña_2010, Kaur_2018, Li_Q_2012
9 Olsvik_2008 Selection of reference genes for qRT-PCR examination of wild populations of Atlantic cod Gadus morhua Olsvik, Pål A; Søfteland, Liv; Lie, Kai K 2008 2008-07-16 COMM-USE N PMC2527504 18710500.0 10.1186/1756-0500-1-47 6bq0tps2 0.765144 Wang_2007, Zhou_2014, Salem_2014, Samiullah_2017 Olsvik_2005, Bansal_2012, Salem_2014, Peña_2010
10 Zhou_2014 Selection of Suitable Reference Genes for Normalization of Quantitative Real-Time Polymerase Chain Reaction in Human Cartilage Endplate of the Lumbar Spine Zhou, Zhi-Jie; Zhang, Jian-Feng; Xia, Ping; Wang, Ji-Ying; Chen, Shuai; Fang, Xiang-Qian; Fan, Shun-Wu 2014 2014-02-18 COMM-USE N PMC3928306 24558443.0 10.1371/journal.pone.0088892 eu4vlfui 0.750557 Wang_2007, Yu_H_2007, Samiullah_2017, Sahu_2018 Peletto_2011, Li_Q_2012, Olsvik_2005
11 Sahu_2018 Selection and validation of suitable reference genes for qPCR gene expression analysis in goats and sheep under Peste des petits ruminants virus (PPRV), lineage IV infection Sahu, Amit Ranjan; Wani, Sajad Ahmad; Saxena, Shikha; Rajak, Kaushal Kishor; Chaudhary, Dheeraj; Sahoo, Aditya Prasad; Khanduri, Alok; Pandey, Aruna; Mondal, Piyali; Malla, Waseem Akram; Khan, Raja Ishaq Nabi; Tiwari, Ashok Kumar; Mishra, Bina; Muthuchelvan, D.; Mishra, Bishnu Prasad; Singh, Raj Kumar; Gandham, Ravi Kumar 2018 2018-10-29 COMM-USE N PMC6206032 30374051.0 10.1038/s41598-018-34236-7 mmcu18c8 0.719421 Zhou_2014, Wang_2007, Naito_2007, Brake_2008 Kaur_2018, Peña_2010, Peletto_2011
12 Ouyang_2017 Proteomic Analysis of Chicken Skeletal Muscle during Embryonic Development Ouyang, Hongjia; Wang, Zhijun; Chen, Xiaolan; Yu, Jiao; Li, Zhenhui; Nie, Qinghua 2017 2017-05-08 COMM-USE N PMC5420592 28533755.0 10.3389/fphys.2017.00281 c7cmo49k 0.695803 Wang_2007, Trobaugh_2017, Haasnoot_2010, Bansal_2020 Cao_Z_2011, Zhang_2015, Li_J_2019, Ding_2012
13 Liui_2020 Comprehensive Genomic Characterization Analysis of lncRNAs in Cells With Porcine Delta Coronavirus Infection Liui, Junli; Wang, Fangfang; Du, Liuyang; Li, Juan; Yu, Tianqi; Jin, Yulan; Yan, Yan; Zhou, Jiyong; Gu, Jinyan 2020 2020-01-01 COMM-USE N PMC6999024 32063887.0 10.3389/fmicb.2019.03036 fmb5nyxu 0.688118 Trobaugh_2017, Haasnoot_2010, Zhang_2013, Atianand_2014 Tang_2019, Trypsteen_2016, Chen_2019, Liu_X_2015
14 Bansal_2012 Validation of Reference Genes for Gene Expression Studies in Aphis glycines (Hemiptera: Aphididae) Bansal, Raman; Mamidala, Praveen; Mian, M. A. Rouf; Mittapalli, Omprakash; Michel, Andy P. 2012 2012-08-01 PMC N PMC7110211 22928326.0 10.1603/ec12095 lchxtppi 0.686800 Wang_2007, Salem_2014, Zhou_2014, Samiullah_2017 Salem_2014, Olsvik_2008, Wu_H_2004
15 Yue_H_2010 Reference gene selection for normalization of PCR analysis in chicken embryo fibroblast infected with H5N1 AIV Yue, Hua; Lei, Xiao-wen; Yang, Fa-long; Li, Ming-Yi; Tang, Cheng 2010 2010-12-21 PMC N PMC7090763 21221921.0 10.1007/s12250-010-3114-4 epxbv1hy 0.683087 Yasui_2016, Lu_P_2016, Armesto_2007, Volmer_2010 Ren_X_2008, Wu_H_2004
16 Ayers_2007 Expression stability of commonly used reference genes in canine articular connective tissues Ayers, Duncan; Clements, Dylan N; Salway, Fiona; Day, Philip JR 2007 2007-05-07 COMM-USE N PMC1884148 17484782.0 10.1186/1746-6148-3-7 blhltvns 0.677584 Wang_2007, Zhou_2014, Samiullah_2017, Brake_2008 Maccoux_2007, Peletto_2011, Li_Q_2012
17 Maroniche_2011 Reference gene selection for gene expression studies using RT-qPCR in virus-infected planthoppers Maroniche, Guillermo A; Sagadín, Mónica; Mongelli, Vanesa C; Truol, Graciela A; del Vas, Mariana 2011 2011-06-16 COMM-USE N PMC3142240 21679431.0 10.1186/1743-422x-8-308 2gsso3p5 0.669041 Wang_2007, Zhou_2014, Salem_2014, Yang_2013, Lamb_1991 Wu_H_2004, Peña_2010, Bansal_2012, Salem_2014
18 Han_K_2016 Quantitative Proteomic Analysis of Duck Ovarian Follicles Infected with Duck Tembusu Virus by Label-Free LC-MS Han, Kaikai; Zhao, Dongmin; Liu, Yuzhuo; Liu, Qingtao; Huang, Xinmei; Yang, Jing; An, Fengjiao; Li, Yin 2016 2016-03-31 COMM-USE N PMC4815560 27066001.0 10.3389/fmicb.2016.00463 gkpm5qf5 0.664847 Trobaugh_2017, Haasnoot_2010, Volmer_2010, Rice_1992, Berkhout_2006 Ding_2012, Cao_Z_2011, Benej_2019, Ren_X_2008
19 Kapila_2013 Identification of Appropriate Reference Genes for qRT-PCR Analysis of Heat-Stressed Mammary Epithelial Cells in Riverine Buffaloes (Bubalus bubalis) Kapila, Neha; Kishore, Amit; Sodhi, Monika; Sharma, Ankita; Kumar, Pawan; Mohanty, A. K.; Jerath, Tanushri; Mukesh, M. 2013 2013-01-28 COMM-USE N PMC4393032 25937980.0 10.5402/2013/735053 6elmzcfl 0.663681 Zhou_2014, Wang_2007, Yu_H_2007, Polverino_2017 Olsvik_2008, Li_Q_2012, Peletto_2011
20 Wang_2007 Relationship between mRNA stability and intron presence Wang, Hai-Fang; Feng, Liang; Niu, Deng-Ke 2007 2007-03-02 PMC N PMC7092898 17207776.0 10.1016/j.bbrc.2006.12.184 el7bdkcf 0.659357 Lamb_1991, Krause_1987, Ivanova_2015, Trobaugh_2017 Gu_K_2018, Gopinath_2015
21 Chen_2018 Genome-wide identification and characterization of long non-coding RNAs involved in the early somatic embryogenesis in Dimocarpus longan Lour Chen, Yan; Li, Xue; Su, Liyao; Chen, Xu; Zhang, Shuting; Xu, Xiaoping; Zhang, Zihao; Chen, Yukun; XuHan, Xu; Lin, Yuling; Lai, Zhongxiong 2018 2018-11-06 COMM-USE N PMC6219066 30400813.0 10.1186/s12864-018-5158-z 93ldjyi5 0.657064 Wang_2007, Zhang_2013, Atianand_2014, Haasnoot_2010, Trobaugh_2017 Liui_2020, Trypsteen_2016, Liu_W_2018
22 Filby_2007 Appropriate 'housekeeping' genes for use in expression profiling the effects of environmental estrogens in fish Filby, Amy L; Tyler, Charles R 2007 2007-02-08 COMM-USE N PMC1802086 17288598.0 10.1186/1471-2199-8-10 a602au5b 0.648299 Wang_2007, Zhou_2014, Salem_2014, Samiullah_2017 Olsvik_2008, Li_Q_2012, Olsvik_2005, Peña_2010
23 Chey_2010 Validation and application of normalization factors for gene expression studies in rubella virus‐infected cell lines with quantitative real‐time PCR Chey, S.; Claus, C.; Liebert, U.G. 2010 2010-03-09 PMC N PMC7166394 20217898.0 10.1002/jcb.22518 ybfby3xt 0.647862 Wang_2007, Zhou_2014, Haasnoot_2010, Volmer_2010, Trobaugh_2017
24 Li_K_2018 Identification and Validation of Reference Genes for RT-qPCR Normalization in Mythimna separata (Lepidoptera: Noctuidae) Li, Ke; Xu, Na; Yang, Yu Jing; Zhang, Jin Hui; Yin, Huan 2018 2018-07-31 COMM-USE N PMC6091413 30151374.0 10.1155/2018/1828253 they9j06 0.645861 Wang_2007, Francis_2016, Haasnoot_2010, Chang_2011, Berkhout_2006 Olsvik_2008, Bansal_2012, Huang_2017, Li_Q_2012
25 Zhao_2010 Proteomic analysis of primary duck hepatocytes infected with duck hepatitis B virus Zhao, Yanfeng; Ben, Haijing; Qu, Su; Zhou, Xinwen; Yan, Liang; Xu, Bin; Zhou, Shuangcheng; Lou, Qiang; Ye, Rong; Zhou, Tianlun; Yang, Pengyuan; Qu, Di 2010 2010-06-07 COMM-USE N PMC2904733 20529248.0 10.1186/1477-5956-8-28 u6jy6w1m 0.645854 Trobaugh_2017, Rice_1992, Volmer_2010, Compton_2014, Li_C_2013 Zhou_2012, Ren_X_2008
26 Stamova_2009 Identification and validation of suitable endogenous reference genes for gene expression studies in human peripheral blood Stamova, Boryana S; Apperson, Michelle; Walker, Wynn L; Tian, Yingfang; Xu, Huichun; Adamczy, Peter; Zhan, Xinhua; Liu, Da-Zhi; Ander, Bradley P; Liao, Isaac H; Gregg, Jeffrey P; Turner, Renee J; Jickling, Glen; Lit, Lisa; Sharp, Frank R 2009 2009-08-05 COMM-USE N PMC2736983 19656400.0 10.1186/1755-8794-2-49 tbxar0tu 0.642453 Wang_2007, Yu_H_2007, Zhou_2014, Brake_2008, Samiullah_2017 Peletto_2011, Filby_2007
27 Xu_X_2018 Using pan RNA-seq analysis to reveal the ubiquitous existence of 5’ end and 3’ end small RNAs Xiaofeng Xu; Haishuo Ji; Zhi Cheng; Xiufeng Jin; Xue Yao; Yanqiang Liu; Qiang Zhao; Tao Zhang; Jishou Ruan; Wenjun Bu; Ze Chen; Shan Gao 2018 2018-10-15 BioRxiv N 10.1101/444117 zm3k337a 0.641418 Wang_2017, Lamb_1991, Trobaugh_2017, Wang_2007, Krause_1987 Xu_X_2019, Byszewska_2015
28 Xu_X_2019 Using Pan RNA-Seq Analysis to Reveal the Ubiquitous Existence of 5′ and 3′ End Small RNAs Xu, Xiaofeng; Ji, Haishuo; Jin, Xiufeng; Cheng, Zhi; Yao, Xue; Liu, Yanqiang; Zhao, Qiang; Zhang, Tao; Ruan, Jishou; Bu, Wenjun; Chen, Ze; Gao, Shan 2019 2019-02-14 COMM-USE N PMC6382676 30838030.0 10.3389/fgene.2019.00105 drxwihh2 0.634935 Wang_2017, Lamb_1991, Wang_2007, Trobaugh_2017, Krause_1987 Xu_X_2018, Byszewska_2015, Adams_2003
29 Kuchipudi_2012 18S rRNA is a reliable normalisation gene for real time PCR based on influenza virus infected cells Kuchipudi, Suresh V; Tellabati, Meenu; Nelli, Rahul K; White, Gavin A; Perez, Belinda Baquero; Sebastian, Sujith; Slomka, Marek J; Brookes, Sharon M; Brown, Ian H; Dunham, Stephen P; Chang, Kin-Chow 2012 2012-10-08 COMM-USE N PMC3499178 23043930.0 10.1186/1743-422x-9-230 oqnb4gks 0.634221 Rice_1992, Yang_2013, Auewarakul_2005, Armesto_2007 Schoenike_1999, Salem_2014, Zambenedetti_2017
30 GU_S_2014 Aberrant expression of long noncoding RNAs in chronic thromboembolic pulmonary hypertension GU, SONG; LI, GUANGHUI; ZHANG, XITAO; YAN, JUN; GAO, JIE; AN, XIANGGUANG; LIU, YAN; SU, PIXIONG 2014 2014-12-17 COMM-USE N PMC4337719 25522749.0 10.3892/mmr.2014.3102 vldknsrm 0.634088 Trobaugh_2017, Haasnoot_2010, Atianand_2014, Wang_2007, Trypsteen_2016 Trypsteen_2016, Liui_2020, Liu_W_2018, Li_Y_2017
31 Niu_X_2017 Transcriptome analysis of avian reovirus-mediated changes in gene expression of normal chicken fibroblast DF-1 cells Niu, Xiaosai; Wang, Yuyang; Li, Min; Zhang, Xiaorong; Wu, Yantao 2017 2017-11-25 COMM-USE N PMC5702118 29178824.0 10.1186/s12864-017-4310-5 n952re94 0.633098 Trobaugh_2017, Haasnoot_2010, Wang_2007, Auewarakul_2005, Naito_2007 Ren_X_2008, Wu_H_2004, Chen_2014
32 Chen_2014 Proteomics Analysis of the DF-1 Chicken Fibroblasts Infected with Avian Reovirus Strain S1133 Chen, Wen-Ting; Wu, Yi-Le; Chen, Ting; Cheng, Chao-Sheng; Chan, Hong-Lin; Chou, Hsiu-Chuan; Chen, Yi-Wen; Yin, Hsien-Sheng 2014 2014-03-25 COMM-USE N PMC3965424 24667214.0 10.1371/journal.pone.0092154 r3unya2l 0.628210 Trobaugh_2017, Haasnoot_2010, Berkhout_2006, Abernathy_2015, Herbert_2016 Ren_X_2008, Zhang_2015, Ding_2012, Kim_D_2016
33 Chen_2019 Profile analysis of circRNAs induced by porcine endemic diarrhea virus infection in porcine intestinal epithelial cells Chen, Jianing; Wang, Haiwen; Jin, Li; Wang, Liyuan; Huang, Xin; Chen, Wenwen; Yan, Miaomiao; Liu, Guangliang 2019 2019-01-15 None N PMC7112103 30530223.0 10.1016/j.virol.2018.11.014 j7pde2la 0.626920 Trobaugh_2017, Rice_1992, Naito_2007, Haasnoot_2010, Auewarakul_2005 Ren_X_2008, Jiang_2017, Liui_2020
34 Chen_2017 Selection of reference genes for expression analysis using RT-qPCR in the dissemination system of Heliothis virescens ascovirus 3 h (HvAV-3h) Chen, Zi-Shu; Han, Ning-Ning; Li, Jian-Hong; Huang, Guo-Hua; Wan, Hu 2017 2017-08-01 COMM-USE N PMC5539149 28765578.0 10.1038/s41598-017-07684-w rvf3eoy4 0.626367 Krause_1987, Berkhout_2006, Wang_2007, Payne_2017, Herbert_2016 Wu_H_2004, Ren_X_2008, Yan_J_2020
35 Bogaert_2006 Selection of a set of reliable reference genes for quantitative real-time PCR in normal equine skin and in equine sarcoids Bogaert, Lies; Van Poucke, Mario; De Baere, Cindy; Peelman, Luc; Gasthuys, Frank; Martens, Ann 2006 2006-04-27 COMM-USE N PMC1484482 16643647.0 10.1186/1472-6750-6-24 icp9d998 0.622346 Zhou_2014, Sahu_2018, Wang_2007, Samiullah_2017, Yu_H_2007 Peletto_2011, Li_Q_2012, Gueudin_2003
36 Hakmé_2007 The macroPARP genes parp‐9 and parp‐14 are developmentally and differentially regulated in mouse tissues Hakmé, Antoinette; Huber, Aline; Dollé, Pascal; Schreiber, Valérie 2007 2007-12-10 PMC N PMC7163462 18069692.0 10.1002/dvdy.21399 bg8nvgim 0.621734 Haasnoot_2010, Wang_2007, Volmer_2010, Trobaugh_2017, Atianand_2014
37 Peña_2010 An evaluation of potential reference genes for stability of expression in two salmonid cell lines after infection with either Piscirickettsia salmonis or IPNV Peña, Andrea A; Bols, Niels C; Marshall, Sergio H 2010 2010-04-14 COMM-USE N PMC2873344 20398263.0 10.1186/1756-0500-3-101 0xn6mqh6 0.617882 Wang_2007, Zhou_2014, Salem_2014, Yang_2013, Herbert_2016 Olsvik_2008, Maroniche_2011, Bansal_2012, Wu_H_2004
38 Maccoux_2007 Identification of new reference genes for the normalisation of canine osteoarthritic joint tissue transcripts from microarray data Maccoux, Lindsey J; Clements, Dylan N; Salway, Fiona; Day, Philip JR 2007 2007-07-25 COMM-USE N PMC1976117 17651481.0 10.1186/1471-2199-8-62 zr28uujh 0.617123 Wang_2007, Yu_H_2007, Zhou_2014, Brake_2008 Ayers_2007, Zhang_2015, Leutenegger_1999
39 Du_J_2016 Proteomic analysis of sheep primary testicular cells infected with bluetongue virus Du, Junzheng; Xing, Shanshan; Tian, Zhancheng; Gao, Shandian; Xie, Junren; Chang, Huiyun; Liu, Guangyuan; Luo, Jianxun; Yin, Hong 2016 2016-04-13 PMC N PMC7168089 26989863.0 10.1002/pmic.201500275 slybrok6 0.615291 Trobaugh_2017, Haasnoot_2010, Berkhout_2006, Volmer_2010, Abernathy_2015
40 Xie_F_2006 Harnessing in vivo siRNA delivery for drug discovery and therapeutic development Xie, Frank Y.; Woodle, Martin C.; Lu, Patrick Y. 2006 2006-01-31 PMC N PMC7108327 16478693.0 10.1016/s1359-6446(05)03668-8 dkvoorxt 0.611220 Berkhout_2006, Lu_P_2008, Trobaugh_2017, Bennasser_2012 Lu_P_2008, Wu_S_2009, Beilvert_2012, Behlke_2006
41 Zhang_2015 Differential Expression of miR-499 and Validation of Predicted Target Genes in the Testicular Tissue of Swine at Different Developmental Stages Zhang, Xiaojun; Li, Chuanmin; Liu, Xin; Lu, Chunyan; Bai, Chunyan; Zhao, Zhihui; Sun, Boxing 2015 2015-07-01 PMC N PMC4504256 25786081.0 10.1089/dna.2014.2728 j61kiixp 0.608818 Wang_2007, Trobaugh_2017, Brake_2008, Haasnoot_2010 Trypsteen_2016, Chuammitri_2020, Sun_Y_2014
42 Peletto_2011 Evaluation of Internal Reference Genes for Quantitative Expression Analysis by Real-Time PCR in Ovine Whole Blood Peletto, Simone; Bertuzzi, Simone; Campanella, Chiara; Modesto, Paola; Maniaci, Maria Grazia; Bellino, Claudio; Ariello, Dario; Quasso, Antonio; Caramelli, Maria; Acutis, Pier Luigi 2011 2011-11-09 COMM-USE N PMC3233434 22174628.0 10.3390/ijms12117732 g2pb02vx 0.600452 Zhou_2014, Yu_H_2007, Goradia_1988, Chang_2011 Li_Q_2012, Sahu_2018, Olsvik_2008
43 Trypsteen_2016 Differential expression of lncRNAs during the HIV replication cycle: an underestimated layer in the HIV-host interplay Trypsteen, Wim; Mohammadi, Pejman; Van Hecke, Clarissa; Mestdagh, Pieter; Lefever, Steve; Saeys, Yvan; De Bleser, Pieter; Vandesompele, Jo; Ciuffi, Angela; Vandekerckhove, Linos; De Spiegelaere, Ward 2016 2016-10-26 None N PMC5080576 27782208.0 10.1038/srep36111 er3kkn9m 0.600436 Trobaugh_2017, Haasnoot_2010, Atianand_2014, Herbert_2016, Berkhout_2006 Masante_2015, Ariumi_2014, Liu_W_2018, Lamsisi_2020
44 de_Oliveira_2011 Reference Genes for the Normalization of Gene Expression in Eucalyptus Species de Oliveira, Luisa Abruzzi; Breton, Michèle Claire; Bastolla, Fernanda Macedo; Camargo, Sandro da Silva; Margis, Rogério; Frazzon, Jeverson; Pasquali, Giancarlo 2011 2011-12-24 PMC N PMC7107212 22197885.0 10.1093/pcp/pcr187 ttrcmtu4 0.600408 Wang_2007, Yu_H_2007, Chang_2011, Francis_2016 Li_Q_2012, Olsvik_2008, Qu_R_2019, Maroniche_2011
45 Liu_X_2015 The Porcine MicroRNA Transcriptome Response to Transmissible Gastroenteritis Virus Infection Liu, Xiao; Zhu, Ling; Liao, Shan; Xu, Zhiwen; Zhou, Yuancheng 2015 2015-03-17 COMM-USE N PMC4363316 25781021.0 10.1371/journal.pone.0120377 su6mcaf1 0.598064 Trobaugh_2017, Haasnoot_2010, Rice_1992, Herbert_2016, Auewarakul_2005 Liu_X_2018, Ren_X_2008, Liui_2020
46 Chang_2006 Influence of intron and exon splicing enhancers on mammalian cell expression of a truncated spike protein of SARS-CoV and its implication for subunit vaccine development Chang, Chia-Yin; Hong, Willy W.L.; Chong, Pele; Wu, Suh-Chin 2006 2006-02-20 PMC N PMC7115599 16194584.0 10.1016/j.vaccine.2005.09.011 d9x1wii6 0.597033 Wang_2007, Gendron_2010, Shi_S_2000, Volmer_2010, Brake_2008 Wang_2009, Lin_Y_2013
47 Radonić_2005 Reference gene selection for quantitative real-time PCR analysis in virus infected cells: SARS corona virus, Yellow fever virus, Human Herpesvirus-6, Camelpox virus and Cytomegalovirus infections Radonić, Aleksandar; Thulke, Stefanie; Bae, Hi-Gung; Müller, Marcel A; Siegert, Wolfgang; Nitsche, Andreas 2005 2005-02-10 COMM-USE N PMC549079 15705200.0 10.1186/1743-422x-2-7 efrv5nvf 0.595733 Rice_1992, Tallmadge_2008, Auewarakul_2005, Armesto_2007 Li_Y_2009, Nowak_1984, Wang_2013
48 Muhammad_2019 Molecular Characterization of Two Mitogen-Activated Protein Kinases: p38 MAP Kinase and Ribosomal S6 Kinase From Bombyx mori (Lepidoptera: Bombycidae), and Insight Into Their Roles in Response to BmNPV Infection Muhammad, Azharuddin; Toufeeq, Shahzad; Yu, Hai-Zhong; Wang, Jie; Zhang, Shang-Zhi; Li, Bing; Li, Zhen; Yang, Li-Ang; Hu, Pei; Ma, Yan; Xu, Jia-Ping 2019 2019-02-02 NONCOMM N PMC6359879 30715437.0 10.1093/jisesa/iey134 2s3x6sj8 0.591044 Kumar_2016, Fung_2017, Ban_J_2018, Blank_2017, Li_C_2017 Mitomo_2016, Han_M_2008
49 Goossens_2005 Selection of reference genes for quantitative real-time PCR in bovine preimplantation embryos Goossens, Karen; Van Poucke, Mario; Van Soom, Ann; Vandesompele, Jo; Van Zeveren, Alex; Peelman, Luc J 2005 2005-12-03 COMM-USE N PMC1315359 16324220.0 10.1186/1471-213x-5-27 jid2pfhz 0.588694 Zhou_2014, Wang_2007, Yu_H_2007, Salem_2014 Salem_2014, Li_Q_2012, Olsvik_2008
50 Zhang_2020 Quantitative label-free proteomic analysis reveals differentially expressed proteins in the digestive juice of resistant versus susceptible silkworm strains and their predicted impacts on BmNPV infection Zhang, Shang-zhi; Wang, Jie; Zhu, Lin-bao; Toufeeq, Shahzad; Xu, Xin; You, Ling-ling; Li, Bing; Hu, Pei; Xu, Jia-ping 2020 2020-01-06 PMC N PMC7102787 31610263.0 10.1016/j.jprot.2019.103527 0isssmbl 0.573881 Berkhout_2006, Rice_1992, Trobaugh_2017, Haasnoot_2010, Herbert_2016 Yang_2017, Wang_2016, Wu_H_2004
51 Chuammitri_2020 Detection and characterization of microRNA expression profiling and its target genes in response to canine parvovirus in Crandell Reese Feline Kidney cells Chuammitri, Phongsakorn; Vannamahaxay, Soulasack; Sornpet, Benjaporn; Pringproa, Kidsadagon; Patchanee, Prapas 2020 2020-02-12 COMM-USE N PMC7023829 32095352.0 10.7717/peerj.8522 wyzh31t0 0.571711 Trobaugh_2017, Haasnoot_2010, Atianand_2014, Zhang_2013, Berkhout_2006 Zhang_2015, Hasan_2014, Li_H_2020, Sun_J_2014
52 Peng_2011 Integrative Deep Sequencing of the Mouse Lung Transcriptome Reveals Differential Expression of Diverse Classes of Small RNAs in Response to Respiratory Virus Infection Peng, Xinxia; Gralinski, Lisa; Ferris, Martin T.; Frieman, Matthew B.; Thomas, Matthew J.; Proll, Sean; Korth, Marcus J.; Tisoncik, Jennifer R.; Heise, Mark; Luo, Shujun; Schroth, Gary P.; Tumpey, Terrence M.; Li, Chengjun; Kawaoka, Yoshihiro; Baric, Ralph S.; Katze, Michael G. 2011 2011-11-15 NONCOMM N PMC3221602 22086488.0 10.1128/mbio.00198-11 hzh5tyoo 0.560111 Rice_1992, Trobaugh_2017, Herbert_2016, Auewarakul_2005, Haasnoot_2010 Cook_2018, Ren_X_2008
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114 Zhao_2017 Time-series analysis in imatinib-resistant chronic myeloid leukemia K562-cells under different drug treatments Zhao, Yan-hong; Zhang, Xue-fang; Zhao, Yan-qiu; Bai, Fan; Qin, Fan; Sun, Jing; Dong, Ying 2017 2017-08-08 PMC N PMC7088819 28786057.0 10.1007/s11596-017-1781-1 0rr2y17d 0.476228 Wang_2007, Haasnoot_2010, Brake_2008, Trobaugh_2017, Meng_2008 Mohty_2016, Li_L_2012, Liu_J_2010, Donadieu_2005
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118 Li_Y_2017 Microarray Analysis Identifies the Potential Role of Long Non-Coding RNA in Regulating Neuroinflammation during Japanese Encephalitis Virus Infection Li, Yunchuan; Zhang, Hao; Zhu, Bibo; Ashraf, Usama; Chen, Zheng; Xu, Qiuping; Zhou, Dengyuan; Zheng, Bohan; Song, Yunfeng; Chen, Huanchun; Ye, Jing; Cao, Shengbo 2017 2017-09-29 COMM-USE N PMC5626832 29033949.0 10.3389/fimmu.2017.01237 e6p3lrlf 0.470988 Trobaugh_2017, Haasnoot_2010, Herbert_2016, Berkhout_2006, Atianand_2014 Gupta_2010, Trypsteen_2016, Liu_W_2018, Liui_2020
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120 Jia_Z_2020 Tandem CTCF sites function as insulators to balance spatial chromatin contacts and topological enhancer-promoter selection Jia, Zhilian; Li, Jingwei; Ge, Xiao; Wu, Yonghu; Guo, Ya; Wu, Qiang 2020 2020-03-23 COMM-USE N PMC7087399 10.1186/s13059-020-01984-7 jvbcau6m 0.469339 Blank_2017, Oberbeckmann_2020, Wang_2007, UNKNOWN_1992 Sarnowska_2007, Oberbeckmann_2020, Li_P_2017
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122 Bian_2019 iTRAQ-based high-throughput proteomics analysis reveals alterations of plasma proteins in patients infected with human bocavirus Bian, Junmei; Liang, Min; Ding, Shuxian; Wang, Liyan; Ni, Wenchang; Xiong, Shisi; Li, Wan; Bao, Xingxing; Gao, Xue; Wang, Rong 2019 2019-11-21 COMM-USE N PMC6872134 31751365.0 10.1371/journal.pone.0225261 635cq3z9 0.467330 Trobaugh_2017, Haasnoot_2010, Ban_J_2018, Berkhout_2006, Kumar_2016 Malmo_2016, RamachandraRao_2015, Fan_R_2018
123 Ramaiah_2016 Dysregulation of Long Non-coding RNA (lncRNA) Genes and Predicted lncRNA-Protein Interactions during Zika Virus Infection Arunachalam Ramaiah; Deisy Contreras; Vineela Gangalapudi; Masumi Sameer Padhye; Jie Tang; Vaithilingaraja Arumugaswami 2016 2016-07-01 BioRxiv N 10.1101/061788 2cerplno 0.466606 Trobaugh_2017, Haasnoot_2010, Herbert_2016, Berkhout_2006, Atianand_2014 Trypsteen_2016, Liu_W_2018, Liui_2020
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125 Tallam_2016 Gene Regulatory Network Inference of Immunoresponsive Gene 1 (IRG1) Identifies Interferon Regulatory Factor 1 (IRF1) as Its Transcriptional Regulator in Mammalian Macrophages Tallam, Aravind; Perumal, Thaneer M.; Antony, Paul M.; Jäger, Christian; Fritz, Joëlle V.; Vallar, Laurent; Balling, Rudi; del Sol, Antonio; Michelucci, Alessandro 2016 2016-02-12 COMM-USE N PMC4752512 26872335.0 10.1371/journal.pone.0149050 z245sb3s 0.463441 Trobaugh_2017, Haasnoot_2010, Blank_2017, Berkhout_2006, Atianand_2014 Auch_2004, Lee_W_2019, Gabrilovac_2005
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127 Yang_2019 Transcriptomics analysis reveals candidate genes and pathways for susceptibility or resistance to Singapore grouper iridovirus in orange-spotted grouper (Epinephelus coioides) Yang, Min; Wang, Qing; Wang, Shaowen; Wang, Yuxing; Zeng, Qinglu; Qin, Qiwei 2019 2019-01-31 PMC N 30195709.0 10.1016/j.dci.2018.09.003 le8ced66 0.461374 Wang_2007, Brown_1984, Auewarakul_2005, Xu_J_2016 Chen_2009, Li_C_2019, Wang_2016, Scalf_2019
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129 Juranic_Lisnic_2013 Dual Analysis of the Murine Cytomegalovirus and Host Cell Transcriptomes Reveal New Aspects of the Virus-Host Cell Interface Juranic Lisnic, Vanda; Babic Cac, Marina; Lisnic, Berislav; Trsan, Tihana; Mefferd, Adam; Das Mukhopadhyay, Chitrangada; Cook, Charles H.; Jonjic, Stipan; Trgovcich, Joanne 2013 2013-09-26 COMM-USE N PMC3784481 24086132.0 10.1371/journal.ppat.1003611 jvl63652 0.461014 Trobaugh_2017, Haasnoot_2010, Herbert_2016, Rice_1992, Berkhout_2006 Shabman_2016, Trypsteen_2016
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135 Razvi_2007 Transcriptional oncogenomic hot spots in Barrett's adenocarcinomas: Serial analysis of gene expression Razvi, Mohammad H.; Peng, Dunfa; Dar, Altaf A.; Powell, Steven M.; Frierson, Henry F.; Moskaluk, Christopher A.; Washington, Kay; El‐Rifai, Wael 2007 2007-07-17 PMC N PMC7165894 17636545.0 10.1002/gcc.20479 w4tps34p 0.455852 Wang_2007, Yu_H_2007, Whiteford_2005, Xu_J_2016, Phillippy_2009
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151 Wang_2016 Comparative Transcriptome Analysis of Bombyx mori (Lepidoptera) Larval Midgut Response to BmNPV in Susceptible and Near-Isogenic Resistant Strains Wang, Xue-Yang; Yu, Hai-Zhong; Geng, Lei; Xu, Jia-Ping; Yu, Dong; Zhang, Shang-Zhi; Ma, Yan; Fei, Dong-Qiong 2016 2016-05-11 COMM-USE N PMC4864234 27168061.0 10.1371/journal.pone.0155341 z1b7pj3s 0.442103 Berkhout_2006, Trobaugh_2017, Haasnoot_2010, Herbert_2016 Thibivilliers_2009, Wu_H_2004, Ren_X_2008, Lee_C_2011
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154 Chang_2011 Next-Generation Sequencing Reveals HIV-1-Mediated Suppression of T Cell Activation and RNA Processing and Regulation of Noncoding RNA Expression in a CD4(+) T Cell Line Chang, Stewart T.; Sova, Pavel; Peng, Xinxia; Weiss, Jeffrey; Law, G. Lynn; Palermo, Robert E.; Katze, Michael G. 2011 2011-09-20 NONCOMM N PMC3175625 21933919.0 10.1128/mbio.00134-11 zyzgk2z3 0.440105 Trobaugh_2017, Rice_1992, Auewarakul_2005, Herbert_2016 Nowak_1984
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206 Mandal_2015 Proteomic Analysis of the Vitreous following Experimental Retinal Detachment in Rabbits Mandal, Nakul; Lewis, Geoffrey P.; Fisher, Steven K.; Heegaard, Steffen; Prause, Jan U.; la Cour, Morten; Vorum, Henrik; Honoré, Bent 2015 2015-11-18 COMM-USE N PMC4667062 26664739.0 10.1155/2015/583040 s5otdtwq 0.395371 Gorin_2010, Polverino_2017, Camelo_2014, Kim_J_2015 Camelo_2014, Cruz-Guilloty_2013, Tan_J_2012, Skovbjerg_2010
207 Zhao_2012 RNA interference targeting virion core protein ORF095 inhibits Goatpox virus replication in Vero cells Zhao, Zhixun; Wu, Guohua; Zhu, Xueliang; Yan, Xinmin; Dou, Yongxi; Li, Jian; Zhu, Haixia; Zhang, Qiang; Cai, Xuepeng 2012 2012-02-17 COMM-USE N PMC3298800 22340205.0 10.1186/1743-422x-9-48 bxijla09 0.394721 Brake_2008, Rice_1992, Armesto_2007, Sakamoto_2007, Meng_2008 Wang_2013, McDonagh_2011, Haddad_2011, Lv_K_2009
208 Cao_Y_2011 Identification and Characterization of Three Novel Small Interference RNAs That Effectively Down-Regulate the Isolated Nucleocapsid Gene Expression of SARS Coronavirus Cao, Ying-Li; Wang, Ying; Guo, Rong; Yang, Fan; Zhang, Yun; Wang, Shu-Hui; Liu, Li 2011 2011-02-11 COMM-USE N PMC6259856 21317844.0 10.3390/molecules16021544 q18b88lm 0.394519 Trobaugh_2017, Haasnoot_2010, Herbert_2016, Brake_2008, Wang_2007 Wang_2009, Wang_2010
209 Watson_2007 Determination of suitable housekeeping genes for normalisation of quantitative real time PCR analysis of cells infected with human immunodeficiency virus and herpes viruses Watson, Sarah; Mercier, Sarah; Bye, Chris; Wilkinson, John; Cunningham, Anthony L; Harman, Andrew N 2007 2007-12-03 COMM-USE N PMC2216015 18053162.0 10.1186/1743-422x-4-130 qf2zwbjg 0.393440 Tallmadge_2008, Rice_1992, Lu_P_2016, Trobaugh_2017 Zambenedetti_2017, Kuchipudi_2012
210 Stieger_2009 In vivo gene regulation using tetracycline-regulatable systems Stieger, Knut; Belbellaa, Brahim; Le Guiner, Caroline; Moullier, Philippe; Rolling, Fabienne 2009 2009-07-02 PMC N PMC7103297 19394373.0 10.1016/j.addr.2008.12.016 subvuw0w 0.393025 Berkhout_2006, Haasnoot_2010, Valle_1988, Froelich_2010 Aurisicchio_2002, Haddad_2011
211 Liu_H_2017 Comparative transcriptome analysis reveals induction of apoptosis in chicken kidney cells associated with the virulence of nephropathogenic infectious bronchitis virus Liu, Hui; Yang, Xin; Zhang, Zhikun; Li, Jianan; Zou, Wencheng; Zeng, Fanya; Wang, Hongning 2017 2017-12-31 PMC N PMC7126322 29174688.0 10.1016/j.micpath.2017.11.031 6zc603yw 0.391331 Yasui_2016, Volmer_2010, Auewarakul_2005, Si_F_2020 Ren_X_2008, Chen_2019, Cong_2013, Cao_Z_2011
212 Chen_2019 Online Databases and Non-coding RNAs in Cardiovascular Diseases Chen, Rui; Shi, Chao; Yao, Jianhua; Chen, Wei 2019 2019-12-26 PMC N PMC7153034 10.1007/978-981-15-1671-9_3 wq8zmyhv 0.390244 Haasnoot_2010, Trobaugh_2017, Atianand_2014, Wang_2017, Poltronieri_2015 Yang_2017, Hagiwara_2012, Eißmann_2012
213 Stevenson_2013 Development of a Positive-readout Mouse Model of siRNA Pharmacodynamics Stevenson, Mark; Carlisle, Robert; Davies, Ben; Preece, Chris; Hammett, Michelle; Liu, Wei-li; Fisher, Kerry David; Ryan, Amy; Scrable, Heidi; Seymour, Leonard William 2013 2013-11-19 NONCOMM N PMC3889190 24253258.0 10.1038/mtna.2013.63 hs7sw4mc 0.390064 Brake_2008, Froelich_2010, Sakamoto_2007, Gendron_2010 Aurisicchio_2002, Haddad_2011, González-González_2008, Hung_2006
214 Tchitchek_2014 Sequencing, Annotation and Analysis of the Syrian Hamster (Mesocricetus auratus) Transcriptome Tchitchek, Nicolas; Safronetz, David; Rasmussen, Angela L.; Martens, Craig; Virtaneva, Kimmo; Porcella, Stephen F.; Feldmann, Heinz; Ebihara, Hideki; Katze, Michael G. 2014 2014-11-14 COMM-USE N PMC4232415 25398096.0 10.1371/journal.pone.0112617 4ueabl9p 0.389730 Cheng_2013, Francis_2016, Chang_2011, Zheng_2008 Neves_2015, Zhu_L_2008, Russell_2018, Zivcec_2011
215 Duan_2011 Small interfering RNA targeting for infected‐cell polypeptide 4 inhibits herpes simplex virus type 1 replication in retinal pigment epithelial cells Duan, Fang; Ni, Shiming; Nie, Yuhong; Huang, Qiang; Wu, Kaili 2011 2011-10-20 PMC N PMC7162062 21883773.0 10.1111/j.1442-9071.2011.02668.x s6rd8p41 0.389544 Tallmadge_2008, Meyerson_2017, Rice_1992, Liu_H_2009
216 Chang_2013 Next-Generation Sequencing of Small RNAs from HIV-Infected Cells Identifies Phased microRNA Expression Patterns and Candidate Novel microRNAs Differentially Expressed upon Infection Chang, Stewart T.; Thomas, Matthew J.; Sova, Pavel; Green, Richard R.; Palermo, Robert E.; Katze, Michael G. 2013 2013-02-05 NONCOMM N PMC3560529 23386435.0 10.1128/mbio.00549-12 t98g8z7i 0.389276 Trobaugh_2017, Haasnoot_2010, Herbert_2016, Abernathy_2015 Masaki_2015, Trypsteen_2016
217 Wu_K_2005 Inhibition of Hepatitis B virus gene expression by single and dual small interfering RNA treatment Wu, Kai-Lang; Zhang, Xue; Zhang, Jianlin; Yang, Yongbo; Mu, Yong-Xin; Liu, Mo; Lu, Lu; Li, Yan; Zhu, Ying; Wu, Jianguo 2005 2005-09-30 PMC N PMC7126598 16022904.0 10.1016/j.virusres.2005.04.001 n8qjorqk 0.388350 Brake_2008, Trobaugh_2017, Meng_2008, Sakamoto_2007, Naito_2007 Wu_K_2007, Wu_H_2005, Haddad_2011, Huang_2009
218 Sun_D_2015 Analysis of protein expression changes of the Vero E6 cells infected with classic PEDV strain CV777 by using quantitative proteomic technique Sun, Dongbo; Shi, Hongyan; Guo, Donghua; Chen, Jianfei; Shi, Da; Zhu, Qinghe; Zhang, Xin; Feng, Li 2015 2015-06-15 PMC N PMC7113725 25783682.0 10.1016/j.jviromet.2015.03.002 k568hlf4 0.388086 Trobaugh_2017, Haasnoot_2010, Berkhout_2006, Ban_J_2018, Kumar_2016 Ding_2012, Yang_2017, Wang_2009, Wu_H_2004
219 Wang_2010 Small Interfering RNA Effectively Inhibits the Expression of SARS Coronavirus Membrane Gene at Two Novel Targeting Sites Wang, Ying; Cao, Ying-Li; Yang, Fan; Zhang, Yun; Wang, Shu-Hui; Liu, Li 2010 2010-10-18 COMM-USE N PMC6259191 20956884.0 10.3390/molecules15107197 vtkkczef 0.386990 Naito_2007, Trobaugh_2017, Rice_1992, Brake_2008, Wang_2007 Wang_2009, Haddad_2011
220 Wang_2016 Inhibition of porcine transmissible gastroenteritis virus infection in porcine kidney cells using short hairpin RNAs targeting the membrane gene Wang, Li; Dai, Xianjin; Song, Han; Yuan, Peng; Yang, Zhou; Dong, Wei; Song, Zhenhui 2016 2016-11-15 PMC N PMC7089173 27848068.0 10.1007/s11262-016-1409-8 os2kyvvf 0.386731 Rice_1992, Volmer_2010, Brake_2008, Armesto_2007, Tallmadge_2008 Zhou_2007, Ren_X_2008, Pulford_1991
221 Liu_X_2014 Human borna disease virus infection impacts host proteome and histone lysine acetylation in human oligodendroglia cells Liu, Xia; Zhao, Libo; Yang, Yongtao; Bode, Liv; Huang, Hua; Liu, Chengyu; Huang, Rongzhong; Zhang, Liang; Wang, Xiao; Zhang, Lujun; Liu, Siwen; Zhou, Jingjing; Li, Xin; He, Tieming; Cheng, Zhongyi; Xie, Peng 2014 2014-09-30 None N PMC7112117 25086498.0 10.1016/j.virol.2014.06.040 zt6wohqh 0.386390 Trobaugh_2017, Blank_2017, Meyerson_2017, Rice_1992, den_Boon_2010 Zhang_2015, Ding_2012, Liu_J_2007, Munday_2010
222 Lan_H_2019 siRNAs Derived from Cymbidium Mosaic Virus and Odontoglossum Ringspot Virus Down-modulated the Expression Levels of Endogenous Genes in Phalaenopsis equestris Lan, Han-hong; Wang, Cui-mei; Chen, Shuang-shuang; Zheng, Jian-ying 2019 2019-10-01 NONCOMM N PMC6788414 31632225.0 10.5423/ppj.oa.03.2019.0055 qgrhh3r4 0.386133 Rice_1992, Stork_2011, Banerjee_2001, Chen_2013, Payne_2017 Valle-Casuso_2020, Carmo_2012, McDonagh_2011
223 Xie_T_2019 Cholesterol-25-hydroxylase Is a Chicken ISG That Restricts ALV-J Infection by Producing 25-hydroxycholesterol Xie, Tingting; Feng, Min; Dai, Manman; Mo, Guodong; Ruan, Zhuohao; Wang, Guiyan; Shi, Meiqing; Zhang, Xiquan 2019 2019-05-30 COMM-USE N PMC6631237 31151272.0 10.3390/v11060498 9rx2vmjh 0.385463 Volmer_2010, Yasui_2016, Zhu_Z_2018, Barber_2013, Rice_1992 Ren_X_2008, Valle-Casuso_2020
224 Mallanna_2006 Inhibition of Anatid Herpes Virus-1 replication by small interfering RNAs in cell culture system Mallanna, Sunil Kumar; Rasool, T.J.; Sahay, Bikash; Aleyas, Abi George; Ram, Hira; Mondal, Bimalendu; Nautiyal, Binita; Premraj, Avinash; Sreekumar, E.; Yadav, M.P. 2006 2006-02-28 PMC N PMC7126941 16199105.0 10.1016/j.virusres.2005.08.012 m8lwz1iz 0.384361 Rice_1992, Meyerson_2017, Tallmadge_2008, Stork_2011, Trobaugh_2017 Fan_Q_2012, McDonagh_2011, Wang_2013
225 Chasman_2016 Integrating Transcriptomic and Proteomic Data Using Predictive Regulatory Network Models of Host Response to Pathogens Chasman, Deborah; Walters, Kevin B.; Lopes, Tiago J. S.; Eisfeld, Amie J.; Kawaoka, Yoshihiro; Roy, Sushmita 2016 2016-07-12 COMM-USE N PMC4942116 27403523.0 10.1371/journal.pcbi.1005013 zlqh436d 0.383602 Berkhout_2006, Trobaugh_2017, Lester_2014, Haasnoot_2010 Trypsteen_2016, Mitchell_2013, Meliopoulos_2012, McDermott_2016
226 Kher_2011 7 Antisense Oligonucleotides and RNA Interference Kher, Gitanjali; Trehan, Sonia; Misra, Ambikanandan 2011 2011-12-31 PMC N PMC7150054 10.1016/b978-0-12-384964-9.00007-4 apl5nw0h 0.382826 Trobaugh_2017, Berkhout_2006, Bennasser_2012, Haasnoot_2010, Abernathy_2015 Haddad_2011, Falzarano_2014, Rothe_2010, Leung_2005
227 Li_C_2019 Fish Autophagy Protein 5 Exerts Negative Regulation on Antiviral Immune Response Against Iridovirus and Nodavirus Li, Chen; Liu, Jiaxin; Zhang, Xin; Wei, Shina; Huang, Xiaohong; Huang, Youhua; Wei, Jingguang; Qin, Qiwei 2019 2019-03-19 COMM-USE N PMC6433989 30941145.0 10.3389/fimmu.2019.00517 corvd5cs 0.382293 Ban_J_2018, Trobaugh_2017, Berkhout_2006, Zhu_Z_2018, Aweya_2015 Ding_2017, Zhu_L_2016
228 Hu_F_2019 Expression and role of HEPIS in breast cancer Hu, Fen; Zhang, Yunfeng; Li, Mi; Bai, Yun; Zhang, Xiujun 2019 2019-10-17 NONCOMM N PMC6865829 31788121.0 10.3892/ol.2019.10993 ekjk9ycx 0.381980 Bie_C_2016, Zhang_2007, Yu_P_2015, Lee_S_2016, Aweya_2015 Hu_F_2017, Qin_W_2014, Weng_2016
229 Kumar_2012 RNA-Seq Based Transcriptional Map of Bovine Respiratory Disease Pathogen “Histophilus somni 2336” Kumar, Ranjit; Lawrence, Mark L.; Watt, James; Cooksey, Amanda M.; Burgess, Shane C.; Nanduri, Bindu 2012 2012-01-20 COMM-USE N PMC3262788 22276113.0 10.1371/journal.pone.0029435 uu1oz2ei 0.381482 Xu_J_2016, Krause_1987, Li_D_2019, Auewarakul_2005 Ren_X_2008, Salim_2008, Zhang_2015, Chen_2009
230 Dix_A_2017 Specific and Novel microRNAs Are Regulated as Response to Fungal Infection in Human Dendritic Cells Dix, Andreas; Czakai, Kristin; Leonhardt, Ines; Schäferhoff, Karin; Bonin, Michael; Guthke, Reinhard; Einsele, Hermann; Kurzai, Oliver; Löffler, Jürgen; Linde, Jörg 2017 2017-02-23 COMM-USE N PMC5322194 28280489.0 10.3389/fmicb.2017.00270 gz4ur4xb 0.379936 Haasnoot_2010, Trobaugh_2017, Berkhout_2006, Herbert_2016, Atianand_2014 Stawowczyk_2018, Maelfait_2012, Song_2018
231 Qin_Z_2004 Silencing of SARS-CoV spike gene by small interfering RNA in HEK 293T cells Qin, Zhao-ling; Zhao, Ping; Zhang, Xiao-lian; Yu, Jian-guo; Cao, Ming-mei; Zhao, Lan-juan; Luan, Jie; Qi, Zhong-tian 2004 2004-11-26 PMC N PMC7092946 15504339.0 10.1016/j.bbrc.2004.09.180 es9zk553 0.379642 Brake_2008, Wang_2009, Li_T_2005, Sakamoto_2007, Meng_2006 Wang_2009, Haddad_2011, Zhao_2005, Li_T_2005
232 Ebenezer_2020 Designing Effective small interfering RNA for Post-Transcriptional Silencing of Human GREM1: A Comprehensive Bioinformatics Approach Asiedu Ebenezer 2020 2020-01-24 BioRxiv N 10.1101/2020.01.23.917559 j99qg2a0 0.379420 Naito_2007, Liu_Y_2008, Bennasser_2012, Berkhout_2006, Brake_2008 Hung_2006, Haddad_2011, Rothe_2010, Sui_H_2009
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234 Ying_2015 Transcriptome sequencing and development of an expression microarray platform for liver infection in adenovirus type 5-infected Syrian golden hamsters Ying, Baoling; Toth, Karoly; Spencer, Jacqueline F.; Aurora, Rajeev; Wold, William S.M. 2015 2015-11-30 PMC N PMC4619110 26319212.0 10.1016/j.virol.2015.07.024 zf7us6mu 0.378040 Berkhout_2006, Trobaugh_2017, Haasnoot_2010, Rice_1992 Ren_X_2008, Wu_H_2004
235 Lin_K_2015 Comparative proteomic analysis of cauliflower under high temperature and flooding stresses Lin, K.H.; Chen, L.F.O.; Li, S.D.; Lo, H.F. 2015 2015-02-12 PMC N PMC7116940 10.1016/j.scienta.2014.12.013 hcf7gsv8 0.377801 Wang_2007, Stoecklin_2012, Moon_2012, Haasnoot_2010, Trobaugh_2017 Thibivilliers_2009, Xu_Y_2011, Yang_2019, Ma_Q_2010
236 Meng_2017 Long non-coding RNA expression profiles in different severity EV71-infected hand foot and mouth disease patients Meng, Jun; Yao, Zhenyu; He, Yaqing; Zhang, Renli; Yang, Hong; Yao, Xiangjie; Chen, Long; Zhang, Hailong; Cheng, Jinquan 2017 2017-12-02 PMC N PMC7092854 28993196.0 10.1016/j.bbrc.2017.09.141 mrpq6w1i 0.377040 Trobaugh_2017, Haasnoot_2010, Zhang_2013, Atianand_2014, Poltronieri_2015 Liui_2020, Xun_M_2015, Trypsteen_2016, Malmo_2016
237 Wan_W_2019 A Subcellular Quantitative Proteomic Analysis of Herpes Simplex Virus Type 1-Infected HEK 293T Cells Wan, Weiwei; Wang, Liangjie; Chen, Xi; Zhu, Shenglin; Shang, Weijuan; Xiao, Gengfu; Zhang, Lei-Ke 2019 2019-11-20 COMM-USE N PMC6930547 31757042.0 10.3390/molecules24234215 r7m1x239 0.376934 Ban_J_2018, Meyerson_2017, Dixit_2013, Tallmadge_2008, Compton_2014 Griffiths_2013, Zhang_2015
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239 Cerri_2012 Effects of lactation and pregnancy on gene expression of endometrium of Holstein cows at day 17 of the estrous cycle or pregnancy Cerri, R.L.A.; Thompson, I.M.; Kim, I.H.; Ealy, A.D.; Hansen, P.J.; Staples, C.R.; Li, J.L.; Santos, J.E.P.; Thatcher, W.W. 2012 2012-10-31 None N PMC7094660 22884349.0 10.3168/jds.2011-5114 e3wx096u 0.375811 Wang_2007, Yi_Z_2014, Liu_X_2015, Zhang_2016 Romano_2016, Carvalho_2020, Luebbe_2019
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243 Fujita_2013 RNAi Therapeutic Platforms for Lung Diseases Fujita, Yu; Takeshita, Fumitaka; Kuwano, Kazuyoshi; Ochiya, Takahiro 2013 2013-02-06 COMM-USE N PMC3816685 24275949.0 10.3390/ph6020223 ygfnkgqp 0.373160 Berkhout_2006, Trobaugh_2017, Haasnoot_2010, Lieberman_2003 Rothe_2010, Hemida_2012, Ma_Y_2007, Hung_2006
244 Li_T_2005 siRNA targeting the Leader sequence of SARS-CoV inhibits virus replication Li, T; Zhang, Y; Fu, L; Yu, C; Li, X; Li, Y; Zhang, X; Rong, Z; Wang, Y; Ning, H; Liang, R; Chen, W; Babiuk, L A; Chang, Z 2005 2005-03-17 PMC N PMC7091583 15772689.0 10.1038/sj.gt.3302479 n4r40yit 0.372742 Rice_1992, Brake_2008, Armesto_2007, Trobaugh_2017 Wang_2009, Wu_C_2005, Haddad_2011
245 Sakamoto_2007 Inhibition of hepatitis C virus infection and expression in vitro and in vivo by recombinant adenovirus expressing short hairpin RNA Sakamoto, Naoya; Tanabe, Yoko; Yokota, Takanori; Satoh, Kenichi; Sekine‐Osajima, Yuko; Nakagawa, Mina; Itsui, Yasuhiro; Tasaka, Megumi; Sakurai, Yuki; Cheng‐Hsin, Chen; Yano, Masahiko; Ohkoshi, Shogo; Aoyagi, Yutaka; Maekawa, Shinya; Enomoto, Nobuyuki; Kohara, Michinori; Watanabe, Mamoru 2007 2007-08-07 PMC N PMC7166320 17683479.0 10.1111/j.1440-1746.2007.05076.x m40s6uw9 0.371768 Brake_2008, Tallmadge_2008, Rice_1992, Meng_2008
246 Leung_2014 Chapter Four Lipid Nanoparticles for Short Interfering RNA Delivery Leung, Alex K.K.; Tam, Yuen Yi C.; Cullis, Pieter R. 2014 2014-12-31 PMC N PMC7149983 25409604.0 10.1016/b978-0-12-800148-6.00004-3 3bik0v0x 0.371320 Naito_2007, Berkhout_2006, Trobaugh_2017, Bennasser_2012, Lieberman_2003 Wu_S_2009, Zhang_2006, Akinc_2008, Lu_P_2008
247 Feng_2016 Endogenous Retrovirus ev21 Dose Not Recombine with ALV-J and Induces the Expression of ISGs in the Host Feng, Min; Tan, Yan; Dai, Manman; Li, Yuanfang; Xie, Tingting; Li, Hongmei; Shi, Meiqing; Zhang, Xiquan 2016 2016-10-25 COMM-USE N PMC5078265 27826543.0 10.3389/fcimb.2016.00140 bqv0nbo7 0.370237 Tallmadge_2008, Rice_1992, Volmer_2010, Armesto_2007, Si_F_2020 Ren_X_2008
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255 Li_J_2019 Proteomic analysis of the response of porcine adrenal gland to heat stress Li, Jun-Yu; Yong, Yan-Hong; Gong, Dong-Liang; Shi, Lin; Wang, Xiao-Min; Gooneratne, Ravi; Yadnyavalkya, Patil; Ju, Xiang-Hong 2019 2019-02-28 PMC N PMC7111741 30481676.0 10.1016/j.rvsc.2018.11.004 pij16jaa 0.366492 Haasnoot_2010, Trobaugh_2017, Bansal_2020, Atianand_2014, Berkhout_2006 Benej_2019, Ding_2012, Abraham_2015, Yang_2017
256 Zhu_L_2008 ESTs analyses of Lampetra japonica liver and comparation transcriptome with the jawed vertebrates Zhu, LiNa; Dai, YaLi; Ma, Fei; Li, QingWei 2008 2008-01-01 PMC N PMC7089351 18176788.0 10.1007/s11427-008-0002-3 52kxbzl3 0.366321 Cheng_2013, Wang_2007, Francis_2016, Li_D_2019 Sui_J_2019, Yuan_2014, Xu_S_2020
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259 Verchot-Lubicz_2008 Viral Suppressors of Gene Silencing Verchot-Lubicz, J.; Carr, J.P. 2008 2008-12-31 PMC N PMC7149379 10.1016/b978-012374410-4.00718-4 cktp4cu3 0.365260 Trobaugh_2017, Herbert_2016, Berkhout_2006, Haasnoot_2010 Haddad_2011, Arias_2004, Rothe_2010
260 Huang_2017 Stable Internal Reference Genes for Normalizing Real-Time Quantitative PCR in Baphicacanthus cusia under Hormonal Stimuli and UV Irradiation, and in Different Plant Organs Huang, Yuxiang; Tan, Hexin; Yu, Jian; Chen, Yue; Guo, Zhiying; Wang, Guoquan; Zhang, Qinglei; Chen, Junfeng; Zhang, Lei; Diao, Yong 2017 2017-05-03 COMM-USE N PMC5413499 28515733.0 10.3389/fpls.2017.00668 ye27nqj2 0.365183 Wang_2007, Chang_2011, Zhou_2014, de_Oliveira_2011, Yu_H_2007 Yang_2019, Olsvik_2008, Qu_R_2019
261 Tong_2017 Quantitative Analysis of Cellular Proteome Alterations in CDV-Infected Mink Lung Epithelial Cells Tong, Mingwei; Yi, Li; Sun, Na; Cheng, Yuening; Cao, Zhigang; Wang, Jianke; Li, Shuang; Lin, Peng; Sun, Yaru; Cheng, Shipeng 2017 2017-12-22 COMM-USE N PMC5743685 29312244.0 10.3389/fmicb.2017.02564 mu9jt1ul 0.364706 Trobaugh_2017, Volmer_2010, Yasui_2016, Ban_J_2018, Berkhout_2006 Ding_2012, Benej_2019, Zhang_2015, Bortz_2018
262 Saeed_2020 Genomic convergence of locus-based GWAS meta-analysis identifies DDX11 as a novel Systemic Lupus Erythematosus gene Mohammad Saeed; Alejandro Ibáñez-Costa; Alejandra María Patiño-Trives; Eduardo Collantes Estevez; María Ángeles Aguirre; Chary López-Pedrera 2020 2020-04-18 BioRxiv N 10.1101/2020.04.17.047332 27szdvgd 0.364488 Wang_2007, Yu_H_2007, Xu_J_2016, Haasnoot_2010
263 Doerfler_2017 Discoveries in Molecular Genetics with the Adenovirus 12 System: Integration of Viral DNA and Epigenetic Consequences Doerfler, Walter 2017 2017-05-27 PMC N PMC7120421 10.1007/978-3-319-55021-3_3 1kr8jy5v 0.362895 Trobaugh_2017, Rice_1992, den_Boon_2010, Haasnoot_2010, Herbert_2016 Doerfler_2009, Nowak_1984, Usme-Ciro_2014
264 Zhang_2013 Identification of cellular proteome using two-dimensional difference gel electrophoresis in ST cells infected with transmissible gastroenteritis coronavirus Zhang, Xin; Shi, Hong-Yan; Chen, Jian-Fei; Shi, Da; Lang, Hong-Wu; Wang, Zhong-Tian; Feng, Li 2013 2013-07-16 COMM-USE N PMC3734006 23855489.0 10.1186/1477-5956-11-31 pml9r5nd 0.362731 Volmer_2010, Trobaugh_2017, Rice_1992, Haasnoot_2010, Li_C_2013 Zhang_2015, Ding_2012, Ren_X_2008, Loa_C_2004
265 Rothe_2010 Design of Small Interfering RNAs for Antiviral Applications Rothe, Diana; Wade, Erik J.; Kurreck, Jens 2010 2010-11-19 PMC N PMC7120812 21431692.0 10.1007/978-1-61779-037-9_17 c1kwd9d1 0.362731 Berkhout_2006, Naito_2007, Rice_1992, Trobaugh_2017, Haasnoot_2010 Ma_Y_2007, Haddad_2011, Leung_2005, Sui_H_2009
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267 Xing_2019 A DNA Vaccine Encoding the VAA Gene of Vibrio anguillarum Induces a Protective Immune Response in Flounder Xing, Jing; Xu, Hongsen; Tang, Xiaoqian; Sheng, Xiuzhen; Zhan, Wenbin 2019 2019-03-19 COMM-USE N PMC6435001 30941134.0 10.3389/fimmu.2019.00499 yoog0kft 0.362650 Yasui_2016, Volmer_2010, Zakhartchouk_2005, Yamaguchi_1991, Hwang_2015 Wium_2019, Ren_X_2008, Parma_2011
268 Yu_H_2007 Transcript-level annotation of Affymetrix probesets improves the interpretation of gene expression data Yu, Hui; Wang, Feng; Tu, Kang; Xie, Lu; Li, Yuan-Yuan; Li, Yi-Xue 2007 2007-06-11 COMM-USE N PMC1913542 17559689.0 10.1186/1471-2105-8-194 qbldmef1 0.362574 Cheng_2013, Phillippy_2009, O'Leary_2016, Deng_2015 Hagiwara_2012, Phillippy_2009, Filby_2007
269 Lee_J_2012 Genome-wide host responses against infectious laryngotracheitis virus vaccine infection in chicken embryo lung cells Lee, Jeongyoon; Bottje, Walter G; Kong, Byung-Whi 2012 2012-04-24 COMM-USE N PMC3353197 22530940.0 10.1186/1471-2164-13-143 u1uvnlk2 0.362484 Lu_P_2016, Yasui_2016, Tallmadge_2008, Rice_1992, van_Riel_2007 Ren_X_2008, Chen_2019
270 Bai_H_2019 Allele-Specific Expression of CD4(+) T Cells in Response to Marek’s Disease Virus Infection Bai, Hao; He, Yanghua; Ding, Yi; Carrillo, José A.; Selvaraj, Ramesh K.; Zhang, Huanmin; Chen, Jilan; Song, Jiuzhou 2019 2019-09-17 COMM-USE N PMC6770979 31533276.0 10.3390/genes10090718 5p4ektzv 0.361979 Haasnoot_2010, Trobaugh_2017, Auewarakul_2005, Naito_2007, Callison_1999 Ren_X_2008, Jiang_2017
271 Kenworthy_2009 Short-hairpin RNAs delivered by lentiviral vector transduction trigger RIG-I-mediated IFN activation Kenworthy, Rachael; Lambert, Diana; Yang, Feng; Wang, Nan; Chen, Zihong; Zhu, Haizhen; Zhu, Fanxiu; Liu, Chen; Li, Kui; Tang, Hengli 2009 2009-09-03 NONCOMM N PMC2770676 19729514.0 10.1093/nar/gkp714 uvf5qzfd 0.361254 Ban_J_2018, Dixit_2013, Herbert_2016, Berkhout_2006 Haddad_2011, Zhang_1997, Li_C_2018
272 Rukavtsova_2007 Tissue specific expression of hepatitis B virus surface antigen in transgenic plant cells and tissue culture Rukavtsova, E. B.; Abramikhina, T. V.; Shulga, N. Ya.; Bykov, V. A.; Bur’yanov, Ya. I. 2007 2007-01-01 PMC N PMC7089057 10.1134/s1021443707060088 vmqvropy 0.361039 Wurch_1991, Wang_2007, Gu_Q_2006, Rice_1992 Wu_H_2004, Gu_Q_2006, Gómez_1998
273 Pasoreck_2016 Terpene metabolic engineering via nuclear or chloroplast genomes profoundly and globally impacts off‐target pathways through metabolite signalling Pasoreck, Elise K.; Su, Jin; Silverman, Ian M.; Gosai, Sager J.; Gregory, Brian D.; Yuan, Joshua S.; Daniell, Henry 2016 2016-03-08 COMM-USE N PMC4980996 27507797.0 10.1111/pbi.12548 9tgx0cjt 0.360638 Wang_2007, Trobaugh_2017, Moon_2012, Haasnoot_2010, Herbert_2016 Sui_J_2019, Greseth_2014, Dang_2015, Thibivilliers_2009
274 Xiang_2019 Comparative transcriptome analysis reveals the role of p53 signalling pathway during red‐spotted grouper nervous necrosis virus infection in Lateolabrax japonicus brain cells Xiang, Yangxi; Jia, Peng; Liu, Wei; Yi, Meisheng; Jia, Kuntong 2019 2019-01-18 PMC N PMC7166548 30659619.0 10.1111/jfd.12960 4buooi2d 0.358557 Berkhout_2006, Ban_J_2018, Trobaugh_2017, Herbert_2016, Haasnoot_2010
275 Hulst_2008 Early transcriptional response in the jejunum of germ-free piglets after oral infection with virulent rotavirus Hulst, Marcel; Kerstens, Hinri; de Wit, Agnes; Smits, Mari; van der Meulen, Jan; Niewold, Theo 2008 2008-06-04 PMC N PMC2441536 18523839.0 10.1007/s00705-008-0118-6 b8xb1f12 0.357398 Herbert_2016, Trobaugh_2017, Volmer_2010, Wang_2007, Haasnoot_2010 Ren_X_2008, Debouck_1981, de_Arriba_2002
276 Madore_2010 Alveolar macrophages in allergic asthma: An expression signature characterized by heat shock protein pathways Madore, Anne-Marie; Perron, Stéphanie; Turmel, Véronique; Laviolette, Michel; Bissonnette, Élyse Y.; Laprise, Catherine 2010 2010-02-28 PMC N PMC7124256 19913588.0 10.1016/j.humimm.2009.11.005 o3ofey6l 0.356950 Wang_2007, Haasnoot_2010, Trobaugh_2017, Lee_S_2016 Song_2018, Chen_2015, Malmo_2016, Xiao_2017
277 Zirger_2012 Immune-mediated Loss of Transgene Expression From Virally Transduced Brain Cells Is Irreversible, Mediated by IFNγ, Perforin, and TNFα, and due to the Elimination of Transduced Cells Zirger, Jeffrey M; Puntel, Mariana; Bergeron, Josee; Wibowo, Mia; Moridzadeh, Rameen; Bondale, Niyati; Barcia, Carlos; Kroeger, Kurt M; Liu, Chunyan; Castro, Maria G; Lowenstein, Pedro R 2012 2012-04-01 PMC N PMC3321600 22233583.0 10.1038/mt.2011.243 ahx74893 0.356926 Koch_2012, Hansen_2018, Hwang_2015, Lee_S_2016 ZIRGER_2006, Yamaguchi_1991, Aurisicchio_2002, Adriouch_2011
278 Xu_Y_2012 Transcriptome and Comparative Gene Expression Analysis of Sogatella furcifera (Horváth) in Response to Southern Rice Black-Streaked Dwarf Virus Xu, Yi; Zhou, Wenwu; Zhou, Yijun; Wu, Jianxiang; Zhou, Xueping 2012 2012-04-27 COMM-USE N PMC3338671 22558400.0 10.1371/journal.pone.0036238 i05h8csb 0.356666 Rice_1992, Berkhout_2006, Trobaugh_2017, Cheng_2013 Thibivilliers_2009, Wu_H_2004, Tamborindeguy_2013, Thiruvengadam_2016
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281 Harun_2013 Transcriptional profiling of feline infectious peritonitis virus infection in CRFK cells and in PBMCs from FIP diagnosed cats Harun, Mohammad Syamsul Reza; Kuan, Choong Oi; Selvarajah, Gayathri Thevi; Wei, Tan Sheau; Arshad, Siti Suri; Bejo, Mohd Hair; Omar, Abdul Rahman 2013 2013-11-09 COMM-USE N PMC3829811 24209771.0 10.1186/1743-422x-10-329 365z3qxz 0.355992 Garcia–Moliner_2013, Kamau_2019, Rice_1992, Auewarakul_2005, Wang_2009 Mehrbod_2014, Ren_X_2008, Ehmann_2018, Chen_2019
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283 Dinh_2020 Hotspots of aberrant enhancer activity in fibrolamellar carcinoma reveal molecular mechanisms of oncogenesis and intrinsic drug resistance Timothy A. Dinh; Ramja Sritharan; F. Donelson Smith; Adam B. Francisco; Rosanna K. Ma; Rodica P. Bunaciu; Matt Kanke; Charles G. Danko; Andrew P. Massa; John D. Scott; Praveen Sethupathy 2020 2020-01-18 BioRxiv N 10.1101/2020.01.18.911297 bf4qpsy7 0.354649 Haasnoot_2010, Trobaugh_2017, Lee_S_2016, Atianand_2014, Blank_2017 Chen_2019, Vert_2016, Dai_L_2013
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289 Reghunathan_2005 Expression profile of immune response genes in patients with Severe Acute Respiratory Syndrome Reghunathan, Renji; Jayapal, Manikandan; Hsu, Li-Yang; Chng, Hiok-Hee; Tai, Dessmon; Leung, Bernard P; Melendez, Alirio J 2005 2005-01-18 COMM-USE Y PMC546205 15655079.0 10.1186/1471-2172-6-2 ic4d9dhk 0.349972 Trobaugh_2017, Haasnoot_2010, Berkhout_2006, Herbert_2016, Naito_2007 Malmo_2016, SHAO_2006, de_Lang_2007, Hu_W_2012
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326 Wu_K_2007 Simultaneously inhibition of HIV and HBV replication through a dual small interfering RNA expression system Wu, Kailang; Mu, Yongxin; Hu, Jing; Lu, Lu; Zhang, Xue; Yang, Yongbo; Li, Yan; Liu, Fang; Song, Degui; Zhu, Ying; Wu, Jianguo 2007 2007-05-31 PMC N PMC7114121 17173982.0 10.1016/j.antiviral.2006.11.004 yxcjp5uh 0.327518 Naito_2007, Rice_1992, Tallmadge_2008, Trobaugh_2017, Berkhout_2006 Wu_H_2005, Haddad_2011, Zhou_2012
327 Tang_2019 Analysis of long non-coding RNAs in neonatal piglets at different stages of porcine deltacoronavirus infection Tang, Xiaoyu; Lan, Tian; Wu, Ruiting; Zhou, Zhihai; Chen, Yuqi; Sun, Yuan; Zheng, Yaoyao; Ma, Jingyun 2019 2019-04-11 COMM-USE N PMC6458635 30971240.0 10.1186/s12917-019-1862-4 9qsukr5l 0.325839 Trobaugh_2017, Haasnoot_2010, Herbert_2016, Juranic_Lisnic_2013, Wang_2007 Liui_2020, Kim_D_2016, Gu_W_2019, Ren_X_2008
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330 Hu_S_2020 MiR-10a-5p-Mediated Syndecan 1 Suppression Restricts Porcine Hemagglutinating Encephalomyelitis Virus Replication Hu, Shiyu; Li, Zi; Lan, Yungang; Guan, Jiyu; Zhao, Kui; Chu, Dianfeng; Fan, Gencheng; Guo, Yuguang; Gao, Feng; He, Wenqi 2020 2020-02-20 COMM-USE N PMC7044266 32153518.0 10.3389/fmicb.2020.00105 6vuim12a 0.323955 Trobaugh_2017, Berkhout_2006, Herbert_2016, Haasnoot_2010, Meyerson_2017 Fan_P_2019, Zhang_2019
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335 Qin_Z_2007 siRNAs targeting terminal sequences of the SARS-associated coronavirus membrane gene inhibit M protein expression through degradation of M mRNA Qin, Zhao-ling; Zhao, Ping; Cao, Ming-mei; Qi, Zhong-tian 2007 2007-11-30 PMC N PMC7112935 17590445.0 10.1016/j.jviromet.2007.05.017 shrd1s7r 0.320032 Volmer_2010, Brake_2008, Shi_S_2000, Brunner_2010 Wang_2009, Haddad_2011, Han_M_2008, Zhang_2015
336 PENG_2013 Serum proteomics analysis and comparisons using iTRAQ in the progression of hepatitis B PENG, LIANG; LIU, JING; LI, YANG-MEI; HUANG, ZHAN-LIAN; WANG, PEI-PEI; GU, YU-RONG; ZHENG, YU-BAO; GAO, ZHI-LIANG 2013 2013-09-18 COMM-USE N PMC3820766 24223640.0 10.3892/etm.2013.1310 t6n95laz 0.319156 Aweya_2015, Volmer_2010, Meng_2008, Trobaugh_2017 Xue_G_2013, Lee_F_2011
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338 Kneller_2007 Using LongSAGE to Detect Biomarkers of Cervical Cancer Potentially Amenable to Optical Contrast Agent Labelling Kneller, Julie M.; Ehlen, Thomas; Matisic, Jasenka P.; Miller, Dianne; Van Niekerk, Dirk; Lam, Wan L.; Marra, Marco; Richards-Kortum, Rebecca; Follen, Michelle; MacAulay, Calum; Jones, Steven J. M. 2007 2007-12-11 COMM-USE N PMC2717845 19662225.0 377a16tn 0.318680 Yu_H_2007, Trobaugh_2017, Haasnoot_2010, UNKNOWN_2018 Chen_2014, Chao_2007
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341 Amlie-Wolf_2015 Transcriptomic Changes Due to Cytoplasmic TDP-43 Expression Reveal Dysregulation of Histone Transcripts and Nuclear Chromatin Amlie-Wolf, Alexandre; Ryvkin, Paul; Tong, Rui; Dragomir, Isabelle; Suh, EunRan; Xu, Yan; Van Deerlin, Vivianna M.; Gregory, Brian D.; Kwong, Linda K.; Trojanowski, John Q.; Lee, Virginia M.-Y.; Wang, Li-San; Lee, Edward B. 2015 2015-10-28 COMM-USE N PMC4624943 26510133.0 10.1371/journal.pone.0141836 ccn3f78b 0.317543 Volmer_2010, Blank_2017, Shi_S_2000, Wang_2007 Shi_S_2000
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343 Lively_2008 Effect of chemically modified IL-13 short interfering RNA on development of airway hyperresponsiveness in mice Lively, Tricia N.; Kossen, Karl; Balhorn, Annette; Koya, Toshiyuki; Zinnen, Shawn; Takeda, Katsuyuki; Lucas, Joseph J.; Polisky, Barry; Richards, Ivan M.; Gelfand, Erwin W. 2008 2008-01-31 PMC N PMC7112280 17936889.0 10.1016/j.jaci.2007.08.029 dsprlcdg 0.317031 Lieberman_2003, Brake_2008, Sakamoto_2007, Berkhout_2006 Zhang_2006, Nguyen_2009, McDonagh_2011
344 Bahr_2013 Peripheral Blood Mononuclear Cell Gene Expression in Chronic Obstructive Pulmonary Disease Bahr, Timothy M.; Hughes, Grant J.; Armstrong, Michael; Reisdorph, Rick; Coldren, Christopher D.; Edwards, Michael G.; Schnell, Christina; Kedl, Ross; LaFlamme, Daniel J.; Reisdorph, Nichole; Kechris, Katerina J.; Bowler, Russell P. 2013 2013-08-01 PMC N PMC3824029 23590301.0 10.1165/rcmb.2012-0230oc 0czg8zse 0.316732 Haasnoot_2010, Yu_H_2007, Wang_2007, Trypsteen_2016 Seys_2018, Cao_J_2012, Leung_2020, Singh_2010
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354 Li_J_2010 In vitro inhibition of CSFV replication by retroviral vector-mediated RNA interference Li, Jiangnan; Guo, Huancheng; Shi, Zixue; Tu, Changchun 2010 2010-11-30 PMC N PMC7112837 20691206.0 10.1016/j.jviromet.2010.07.036 leduu22a 0.314868 Tallmadge_2008, Rice_1992, Sakamoto_2007, Armesto_2007 McDonagh_2011, Haddad_2011
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356 Mathur_2016 Analysis of chikungunya virus proteins reveals that non-structural proteins nsP2 and nsP3 exhibit RNA interference (RNAi) suppressor activity Mathur, Kalika; Anand, Abhishek; Dubey, Sunil Kumar; Sanan-Mishra, Neeti; Bhatnagar, Raj K.; Sunil, Sujatha 2016 2016-11-30 COMM-USE N PMC5128919 27901124.0 10.1038/srep38065 m99amd4y 0.314187 Rice_1992, Berkhout_2006, Trobaugh_2017, Naito_2007 Wu_H_2004
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371 Du_J_2019 Transcriptome analysis of responses to bluetongue virus infection in Aedes albopictus cells Du, Junzheng; Gao, Shandian; Tian, Zhancheng; Guo, Yanni; Kang, Di; Xing, Shanshan; Zhang, Guorui; Liu, Guangyuan; Luo, Jianxun; Chang, Huiyun; Yin, Hong 2019 2019-06-10 COMM-USE N PMC6558886 31182015.0 10.1186/s12866-019-1498-3 v8q5bb44 0.310018 Trobaugh_2017, Berkhout_2006, Rice_1992, Auewarakul_2005, Volmer_2010 Wu_H_2016, Carmo_2012, Ren_X_2008
372 Huang_2020 Icariin promotes osteogenic differentiation of BMSCs by upregulating BMAL1 expression via BMP signaling Huang, Zengfa; Wei, Hui; Wang, Xiang; Xiao, Jianwei; Li, Zuoqin; Xie, Yuanliang; Hu, Yun; Li, Xiang; Wang, Zheng; Zhang, Shutong 2020 2020-01-20 NONCOMM N PMC7002972 32016461.0 10.3892/mmr.2020.10954 pg3yxbv8 0.309495 Lee_S_2016, Lengner_2007, Bie_C_2016, Zhang_2007 Mao_Y_2015, Zheng_2020
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388 Sun_J_2013 Cellular microRNA miR-181b Inhibits Replication of Mink Enteritis Virus by Repression of Non-Structural Protein 1 Translation Sun, Jia-zeng; Wang, Jigui; Yuan, Daoli; Wang, Shuang; Li, Zhili; Yi, Bao; Mao, Yaping; Hou, Qiang; Liu, Weiquan 2013 2013-12-11 COMM-USE N PMC3859502 24349084.0 10.1371/journal.pone.0081515 36f6amze 0.303852 Trobaugh_2017, Rice_1992, Haasnoot_2010, Herbert_2016, Yasuda-Inoue_2013 Sun_J_2014, Masante_2015, Masaki_2015
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