Topic 36 -- Abstracts with Biological Entities (English) - 75 Topics

cite ad title authors publish year publish time dataset abstract mentions covid pmcid pubmed id doi cord uid topic weight Similarity scispacy Similarity specter
1 Chen_2020 Detectable 2019-nCoV viral RNA in blood is a strong indicator for the further clinical severity Chen, Weilie; Lan, Yun; Yuan, Xiaozhen; Deng, Xilong; Li, Yueping; Cai, Xiaoli; Li, Liya; He, Ruiying; Tan, Yizhou; Deng, Xizi; Gao, Ming; Tang, Guofang; Zhao, Lingzhai; Wang, Jinlin; Fan, Qinghong; Wen, Chunyan; Tong, Yuwei; Tang, Yangbo; Hu, Fengyu; Li, Feng; Tang, Xiaoping 2020 2020-02-26 COMM-USE Y PMC7054964 32102625.0 10.1080/22221751.2020.1732837 44ji0g78 0.693639 Auewarakul_2005, Chakrabarti_2009, Chieochansin_2010, Li_W_2012 Galmès_2012, Luchsinger_2012
2 Zhang_2020 Virus shedding patterns in nasopharyngeal and fecal specimens of COVID-19 patients Ning Zhang; Yuhuan Gong; Fanping Meng; Yuhai Bi; Penghui Yang; Fusheng Wang 2020 2020-03-30 BioRxiv Y 10.1101/2020.03.28.20043059 1fyag5x3 0.667196 Navascués_2018, Chan_2004, Klem_2013, Chan_2004 Leong_2004, Lu_Y_2013, Xu_D_2005, Pedrosa-Corral_2011
3 Memish_2014 Respiratory Tract Samples, Viral Load, and Genome Fraction Yield in Patients With Middle East Respiratory Syndrome Memish, Ziad A.; Al-Tawfiq, Jaffar A.; Makhdoom, Hatem Q.; Assiri, Abdullah; Alhakeem, Raafat F.; Albarrak, Ali; Alsubaie, Sarah; Al-Rabeeah, Abdullah A.; Hajomar, Waleed H.; Hussain, Raheela; Kheyami, Ali M.; Almutairi, Abdullah; Azhar, Esam I.; Drosten, Christian; Watson, Simon J.; Kellam, Paul; Cotten, Matthew; Zumla, Alimuddin 2014 2014-11-15 PMC N PMC7107391 24837403.0 10.1093/infdis/jiu292 tictyo3f 0.658002 Sun_H_2018, da_Silva_Filho_2012, Albuquerque_2009, Flynn_2018 Espinosa_2017, Hijano_2019, Chu_H_2013
4 Peng_2020 2019 Novel Coronavirus can be detected in urine, blood, anal swabs and oropharyngeal swabs samples Liang Peng; Jing Liu; Wenxiong Xu; Qiumin Luo; Keji Deng; Bingliang Lin; Zhiliang Gao 2020 2020-02-25 BioRxiv Y 10.1101/2020.02.21.20026179 t05ummop 0.657668 Flynn_2018, Song_2010, Kin_N_2017, Durigon_2010 Xu_D_2005, Leong_2004
5 Chan_2004 Laboratory Diagnosis of SARS Chan, Paul K. S.; To, Wing-Kin; Ng, King-Cheung; Lam, Rebecca K. Y.; Ng, Tak-Keung; Chan, Rickjason C. W.; Wu, Alan; Yu, Wai-Cho; Lee, Nelson; Hui, David S. C.; Lai, Sik-To; Hon, Ellis K. L.; Li, Chi-Kong; Sung, Joseph J. Y.; Tam, John S. 2004 2004-05-23 PMC N PMC3323215 15200815.0 10.3201/eid1005.030682 0a5hvja1 0.645623 DeByle_2012, da_Silva_Filho_2012, Chan_2004, Hase_2020 Leong_2004, Park_2015, Xu_D_2005, Lee_F_2011
6 Leong_2004 Virus-specific RNA and Antibody from Convalescent-phase SARS Patients Discharged from Hospital Leong, Hoe Nam; Chan, Kwai Peng; Khan, Ali S.; Oon, Lynette; Se-Thoe, Su Yun; Bai, Xin Lai; Yeo, Daniel; Leo, Yee Sin; Ang, Brenda; Ksiazek, Thomas G.; Ling, Ai Ee 2004 2004-10-23 PMC Y PMC3323266 15504259.0 10.3201/eid1010.040026 fk7qb4ui 0.602377 Chae_2000, Navascués_2018, Li_W_2012, da_Silva_Filho_2012 Xu_D_2005, Luchsinger_2012, Xing_2020, Chan_2004
7 Gupta_2020 Persistent viral shedding of SARS-CoV-2 in faeces - a rapid review Sunnia Gupta; Jody Parker; Sunil Dolwani; Stephanie Smits; Jonathan Underwood 2020 2020-04-22 BioRxiv Y 10.1101/2020.04.17.20069526 we9kzreh 0.591040 Karlsson_2012, Polverino_2017, Lumby_2018, Guery_2014, Pai_M_2006
8 Ma_X_2020 Do children need a longer time to shed SARS-CoV-2 in stool than adults? Ma, Xiang; Su, Liang; Zhang, Yunkui; Zhang, Xiuzhen; Gai, Zhongtao; Zhang, Zhongfa 2020 2020-03-19 PMC Y 10.1016/j.jmii.2020.03.010 k86ljbxu 0.579500 Polverino_2017, Stenseth_2008, Zheng_2020, Monga_2006 Xu_D_2005, He_Y_2020, Xing_2020, Lee_N_2020
9 Chan_2004 Detection of SARS Coronavirus in Patients with Suspected SARS Chan, Kwok H.; Poon, Leo L.L.M.; Cheng, V.C.C.; Guan, Yi; Hung, I.F.N.; Kong, James; Yam, Loretta Y.C.; Seto, Wing H.; Yuen, Kwok Y.; Peiris, Joseph S. Malik 2004 2004-02-23 PMC N PMC3322905 15030700.0 10.3201/eid1002.030610 5148p1nx 0.578163 Navascués_2018, da_Silva_Filho_2012, Li_W_2012, Durigon_2010 Xu_D_2005, Leong_2004, Xing_2020, Woo_P_2004
10 Fisher_2019 Evaluating addition of self-collected throat swabs to nasal swabs for respiratory virus detection Fisher, Cynthia E.; Boeckh, Michael; Jerome, Keith R.; Englund, Janet; Kuypers, Jane 2019 2019-06-30 PMC N PMC6587583 30978619.0 10.1016/j.jcv.2019.04.001 xpog0gpa 0.577073 DeByle_2012, Chan_2004, Ali_M_2015, Leekha_2013 Emerson_2013, Robinson_2008, Larios_2011
11 Xu_D_2005 Persistent shedding of viable SARS-CoV in urine and stool of SARS patients during the convalescent phase Xu, D.; Zhang, Z.; Jin, L.; Chu, F.; Mao, Y.; Wang, H.; Liu, M.; Wang, M.; Zhang, L.; Gao, G. F.; Wang, F. S. 2005 2005-03-24 PMC N PMC7088045 15789222.0 10.1007/s10096-005-1299-5 fxoe65wn 0.576102 Li_W_2012, Navascués_2018, Falsey_2010, Lee_H_2010 Leong_2004, Xing_2020, OKBA_2020, Chan_2004
12 Park_2018 Replicative virus shedding in the respiratory tract of patients with Middle East respiratory syndrome coronavirus infection Park, Wan Beom; Poon, Leo L.M.; Choi, Su-Jin; Choe, Pyoeng Gyun; Song, Kyoung-Ho; Bang, Ji Hwan; Kim, Eu Suk; Kim, Hong Bin; Park, Sang Won; Kim, Nam Joong; Peiris, Malik; Oh, Myoung-don 2018 2018-07-31 PMC N PMC7110884 29753119.0 10.1016/j.ijid.2018.05.003 976qxja2 0.560657 Rice_1992, Majerciak_2018, Armesto_2007, Banerjee_2001 Adney_2014, Memish_2014, Shirato_2007, Kossyvakis_2015
13 Alsaleh_2014 Nasal swab samples and real-time polymerase chain reaction assays in community-based, longitudinal studies of respiratory viruses: the importance of sample integrity and quality control Alsaleh, Asma N; Whiley, David M; Bialasiewicz, Seweryn; Lambert, Stephen B; Ware, Robert S; Nissen, Michael D; Sloots, Theo P; Grimwood, Keith 2014 2014-01-09 COMM-USE N PMC3897990 24405747.0 10.1186/1471-2334-14-15 29jbf9ik 0.554842 Dinh_2011, Falcone_1997, Karlsson_2012, Vemulapalli_2009, Auewarakul_2005 Gueudin_2003, Souza_2019, Memish_2014, Lee_H_2017
14 He_Z_2007 Using patient-collected clinical samples and sera to detect and quantify the severe acute respiratory syndrome coronavirus (SARS-CoV) He, Zhongping; Zhuang, Hui; Zhao, Chunhui; Dong, Qingming; Peng, Guoai; Dwyer, Dominic E 2007 2007-03-27 COMM-USE N PMC1851004 17386116.0 10.1186/1743-422x-4-32 zf8jbhdl 0.551399 Li_W_2012, Zhang_2020, Deng_2015, da_Silva_Filho_2012, Kamau_2019 Xu_D_2005, Leong_2004, Xing_2020, Chan_2004
15 Hernes_2010 Swabbing for respiratory viral infections in older patients: a comparison of rayon and nylon flocked swabs Hernes, S. S.; Quarsten, H.; Hagen, E.; Lyngroth, A. L.; Pripp, A. H.; Bjorvatn, B.; Bakke, P. S. 2010 2010-09-18 NONCOMM N PMC3022161 20853014.0 10.1007/s10096-010-1064-2 ivu632j2 0.548390 DeByle_2012, Chan_2004, Ali_M_2015, Flynn_2018 Ruohola_2006, Rihkanen_2008, Hedin_2015, Lee_F_2011
16 Chang_2006 Lack of Association between Infection with a Novel Human Coronavirus (HCoV), HCoV-NH, and Kawasaki Disease in Taiwan Chang, Luan-Yin; Chiang, Bor-Luen; Kao, Chuan-Liang; Wu, Mei-Hwan; Chen, Pei-Jer; Berkhout, Ben; Yang, Hui-Ching; Huang, Li-Min 2006 2006-01-15 PMC N PMC7109937 16362893.0 10.1086/498875 rxuq3ux8 0.547531 Kamau_2019, Zhang_2020, da_Silva_Filho_2012, Dinh_2011, Jiang_2004 Sastre_2010, Sipulwa_2016, Fielding_2011
17 Huang_2017 Prolonged Detection of Japanese Encephalitis Virus in Urine and Whole Blood in a Returned Short-term Traveler Huang, G Khai Lin; Tio, Shio Yen; Caly, Leon; Nicholson, Suellen; Thevarajan, Irani; Papadakis, Georgina; Catton, Mike; Tong, Steven Y C; Druce, Julian 2017 2017-09-27 NONCOMM N PMC5714136 29226169.0 10.1093/ofid/ofx203 ymcgs03n 0.547418 Li_W_2012, Lu_P_2016, Yasui_2016, Hong-Wu_2015 Ouattara_2011, Park_2007, Xu_D_2005, WANG_2016
18 Wang_2004 Detection of SARS-associated Coronavirus in Throat Wash and Saliva in Early Diagnosis Wang, Wei-Kung; Chen, Shey-Ying; Liu, I-Jung; Chen, Yee-Chun; Chen, Hui-Ling; Yang, Chao-Fu; Chen, Pei-Jer; Yeh, Shiou-Hwei; Kao, Chuan-Liang; Huang, Li-Min; Hsueh, Po-Ren; Wang, Jann-Tay; Sheng, Wang-Hwei; Fang, Chi-Tai; Hung, Chien-Ching; Hsieh, Szu-Min; Su, Chan-Ping; Chiang, Wen-Chu; Yang, Jyh-Yuan; Lin, Jih-Hui; Hsieh, Szu-Chia; Hu, Hsien-Ping; Chiang, Yu-Ping; Wang, Jin-Town; Yang, Pan-Chyr; Chang, Shan-Chwen 2004 2004-07-23 PMC N PMC3323313 15324540.0 10.3201/eid1007.031113 zojhdnlu 0.542338 Myint_1989, Coverstone_2019, Yasui_2016, Volmer_2010, Potgieter_1986 Xu_D_2005, Park_2007, Rockx_2020, Xing_2020
19 To_K_2009 Viral load in patients infected with pandemic H1N1 2009 influenza A virus To, Kelvin K.W.; Chan, Kwok‐Hung; Li, Iris W.S.; Tsang, Tak‐Yin; Tse, Herman; Chan, Jasper F.W.; Hung, Ivan F.N.; Lai, Sik‐To; Leung, Chi‐Wai; Kwan, Yat‐Wah; Lau, Yu‐Lung; Ng, Tak‐Keung; Cheng, Vincent C.C.; Peiris, Joseph S.M.; Yuen, Kwok‐Yung 2009 2009-11-30 PMC N PMC7167040 19950247.0 10.1002/jmv.21664 3w32v2fm 0.540729 Lu_P_2016, Walker_2010, Yasui_2016, Davaro_2013, van_den_Brand_2010
20 Li_I_2010 The Natural Viral Load Profile of Patients With Pandemic 2009 Influenza A(H1N1) and the Effect of Oseltamivir Treatment Li, Iris W.; Hung, Ivan F.; To, Kelvin K.; Chan, Kwok-Hung; Wong, Samson S.Y.; Chan, Jasper F.; Cheng, Vincent C.; Tsang, Owen T.; Lai, Sik-To; Lau, Yu-Lung; Yuen, Kwok-Yung 2010 2010-04-30 PMC N PMC7094292 20061398.0 10.1378/chest.09-3072 8tdtia5w 0.540451 Sun_H_2018, Granados_2012, Choi_2017, Cheng_2017, Yen_C_2019 Lee_F_2011, Espinosa_2017, Baier_2018
21 Ip_D_2011 Validation of Self-swab for Virologic Confirmation of Influenza Virus Infections in a Community Setting Ip, Dennis K. M.; Schutten, Martin; Fang, Vicky J.; Fung, Rita O. P.; Dutkowski, Regina T.; Chan, Kwok-Hung; Leung, Gabriel M.; Peiris, J. S. Malik; Cowling, Benjamin J. 2011 2011-12-23 PMC N PMC3266138 22198963.0 10.1093/infdis/jir803 ruba65p5 0.538271 Karlsson_2012, Li_D_2014, Yang_2010, Walker_2010 Chu_H_2013, Munywoki_2015, Baier_2018
22 Robinson_2008 Use of Throat Swab or Saliva Specimens for Detection of Respiratory Viruses in Children Robinson, Joan L.; Lee, Bonita E.; Kothapalli, Sushma; Craig, William R.; Fox, Julie D. 2008 2008-04-01 PMC N PMC7107872 18444806.0 10.1086/529386 gcrbcoj5 0.536671 van_Riel_2007, Myint_2005, Tallmadge_2008, Falcone_1997 Kalu_2010, To_K_2017, Pedrosa-Corral_2011
23 Memish_2014 Middle East respiratory syndrome coronavirus (MERS-CoV) viral shedding in the respiratory tract: an observational analysis with infection control implications Memish, Ziad A.; Assiri, Abdullah M.; Al-Tawfiq, Jaffar A. 2014 2014-12-31 PMC N PMC7110713 25448335.0 10.1016/j.ijid.2014.10.002 3dq2shp5 0.531257 Zhang_2020, Li_W_2012, Kamau_2019, Kim_D_2016, Vui_D_2014 Alfaraj_2019, Harcourt_2018, Al-Abdely_2019, Khalid_2014
24 Ling_2020 Persistence and clearance of viral RNA in 2019 novel coronavirus disease rehabilitation patients Ling, Yun; Xu, Shui-Bao; Lin, Yi-Xiao; Tian, Di; Zhu, Zhao-Qin; Dai, Fa-Hui; Wu, Fan; Song, Zhi-Gang; Huang, Wei; Chen, Jun; Hu, Bi-Jie; Wang, Sheng; Mao, En-Qiang; Zhu, Lei; Zhang, Wen-Hong; Lu, Hong-Zhou 2020 2020-02-28 PMC Y PMC7147278 32118639.0 10.1097/cm9.0000000000000774 3i8k3bo5 0.530464 Sun_H_2018, Granados_2012, Chen_2020, Chakrabarti_2009, Chan_2004
25 Kols_2019 Comparison of phenotypic and genotypic diagnosis of acute human bocavirus 1 infection in children Kols, Nicola Isabelle; Aatola, Heli; Peltola, Ville; Xu, Man; Nora-Krukle, Zaiga; Hedman, Klaus; Zvirbliene, Aurelija; Toivola, Hanna; Vuorinen, Tytti; Koskinen, Juha M.; Bruning, Andrea H.L.; Christensen, Andreas; Söderlund-Venermo, Maria; Koskinen, Janne O. 2019 2019-11-30 PMC N PMC7106360 31521013.0 10.1016/j.jcv.2019.09.003 awr2tbj0 0.519784 Chieochansin_2010, Dinh_2011, Myint_1989, Song_2014 Kantola_2008, Guo_L_2012, Kim_J_2011
26 Yang_2020 Evaluating the accuracy of different respiratory specimens in the laboratory diagnosis and monitoring the viral shedding of 2019-nCoV infections Yang Yang; Minghui Yang; Chenguang Shen; Fuxiang Wang; Jing Yuan; Jinxiu Li; Mingxia Zhang; Zhaoqin Wang; Li Xing; Jinli Wei; Ling Peng; Gary Wong; Haixia Zheng; Mingfeng Liao; Kai Feng; Jianming Li; Qianting Yang; Juanjuan Zhao; Zheng Zhang; Lei Liu; Yingxia Liu 2020 2020-02-12 BioRxiv Y 10.1101/2020.02.11.20021493 5xki1ulf 0.517903 Flynn_2018, Zhang_2020, Durigon_2010, DeByle_2012, da_Silva_Filho_2012 Lu_Y_2013, Alsultan_2019, Luchsinger_2012
27 McIntosh_2013 A New Virulent Human Coronavirus: How Much Does Tissue Culture Tropism Tell Us? McIntosh, Kenneth 2013 2013-06-01 PMC N PMC7107293 23532103.0 10.1093/infdis/jit125 x9d17j5x 0.515655 Jiang_2013
28 Gamache_2014 27th International Mammalian Genome Conference meeting report Gamache, Benjamin; Leist, Sarah R.; Bard, Andrew Daniel; Logan, Darren W.; Carpanini, Sarah M. 2014 2014-04-22 PMC N PMC7088217 24752582.0 10.1007/s00335-014-9513-3 h3dusudv 0.515655 Raoult_2016, Britton_2006
29 Larios_2011 Self-Collected Mid-Turbinate Swabs for the Detection of Respiratory Viruses in Adults with Acute Respiratory Illnesses Larios, Oscar E.; Coleman, Brenda L.; Drews, Steven J.; Mazzulli, Tony; Borgundvaag, Bjug; Green, Karen; McGeer, Allison J. 2011 2011-06-23 COMM-USE N PMC3121745 21731708.0 10.1371/journal.pone.0021335 qusjlntc 0.511853 Dinh_2011, Polverino_2017, Navascués_2018, Flynn_2018, Karlsson_2012 Emerson_2013, Luchsinger_2012, Lee_F_2011, Lu_Y_2013
30 Emerson_2013 Home Self-Collection of Nasal Swabs for Diagnosis of Acute Respiratory Virus Infections in Children With Cystic Fibrosis Emerson, Julia; Cochrane, Elizabeth; McNamara, Sharon; Kuypers, Jane; Gibson, Ronald L.; Campbell, Angela P. 2013 2013-07-14 PMC N PMC3869469 24363931.0 10.1093/jpids/pit039 t0asknzu 0.510522 Sun_H_2018, Choi_2017, Ackerson_2019, Bastien_2006, Fry_A_2007 Banjar_2019, Lee_F_2011, Bekhof_2013, Chu_H_2013
31 Ali_M_2015 Throat and nasal swabs for molecular detection of respiratory viruses in acute pharyngitis Ali, Mohsin; Han, Sangsu; Gunst, Chris J.; Lim, Steve; Luinstra, Kathy; Smieja, Marek 2015 2015-10-29 COMM-USE N PMC4625558 26511714.0 10.1186/s12985-015-0408-z 2t40ss6h 0.509584 Durigon_2010, Coverstone_2019, DeByle_2012, Crowe_2014 Robinson_2008, Pedrosa-Corral_2011, Lu_Y_2013, Öhrmalm_2010
32 Pratelli_2000 Diagnosis of canine coronavirus infection using nested-PCR Pratelli, Annamaria; Buonavoglia, Domenico; Martella, Vito; Tempesta, Maria; Lavazza, Antonio; Buonavoglia, Canio 2000 2000-01-31 PMC N PMC7119627 10644090.0 10.1016/s0166-0934(99)00134-2 o3qf75ha 0.508146 Lau_L_2003, Jiang_2004, Falcone_1997, Vemulapalli_2009 Decaro_2004, Zaher_2020, Lorusso_2019
33 Granados_2012 Use of an improved quantitative polymerase chain reaction assay to determine differences in human rhinovirus viral loads in different populations Granados, Andrea; Luinstra, Kathy; Chong, Sylvia; Goodall, Emma; Banh, Lisa; Mubareka, Samira; Smieja, Marek; Mahony, James 2012 2012-12-31 PMC N PMC7127517 23017257.0 10.1016/j.diagmicrobio.2012.08.023 wcobampz 0.507926 Choi_2017, Sun_H_2018, Yen_C_2019, Fry_A_2007 Shirato_2007, Lee_F_2011, Pitkäranta_1998, Lee_H_2017
34 de_Groot-Mijnes_2010 Identification of New Pathogens in the Intraocular Fluid of Patients With Uveitis de Groot-Mijnes, Jolanda D.F.; de Visser, Lenneke; Zuurveen, Stephanie; Martinus, Roaldy A.; Völker, René; ten Dam-van Loon, Ninette H.; de Boer, Joke H.; Postma, Gina; de Groot, Raoul J.; van Loon, Anton M.; Rothova, Aniki 2010 2010-11-30 PMC N PMC7093850 20691420.0 10.1016/j.ajo.2010.05.015 u0cpklsv 0.496047 Garcia–Moliner_2013, Davaro_2013, Tallmadge_2008, Lu_P_2016, Crowe_2014 Poh_K_2019, Ruohola_2006, Lee_H_2017
35 Dhiman_2012 Effectiveness of Patient-Collected Swabs for Influenza Testing Dhiman, Neelam; Miller, Rita M.; Finley, Janet L.; Sztajnkrycer, Matthew D.; Nestler, David M.; Boggust, Andy J.; Jenkins, Sarah M.; Smith, Thomas F.; Wilson, John W.; Cockerill, Franklin R.; Pritt, Bobbi S. 2012 2012-06-30 None N PMC3538476 22551906.0 10.1016/j.mayocp.2012.02.011 0h0jcqe6 0.491278 DeByle_2012, Navascués_2018, Ridgway_2015, Dinh_2011 Lee_F_2011, Bekhof_2013, Baier_2018, Pedrosa-Corral_2011
36 Kim_S_2016 Viral RNA in Blood as Indicator of Severe Outcome in Middle East Respiratory Syndrome Coronavirus Infection Kim, So Yeon; Park, Sun Jae; Cho, Sook Young; Cha, Ran-hui; Jee, Hyeon-Gun; Kim, Gayeon; Shin, Hyoung-Shik; Kim, Yeonjae; Jung, Yu Mi; Yang, Jeong-Sun; Kim, Sung Soon; Cho, Sung Im; Kim, Man Jin; Lee, Jee-Soo; Lee, Seung Jun; Seo, Soo Hyun; Park, Sung Sup; Seong, Moon-Woo 2016 2016-10-23 PMC N PMC5038397 27479636.0 10.3201/eid2210.160218 wuf3s8m0 0.489288 Kim_D_2016, Wang_2014, Lim_T_2012, Vui_D_2014 Abroug_2014, Rubio_2017, Moon_2017, Baier_2018
37 Flynn_2018 Influenza D Virus in Cattle, Ireland Flynn, Orla; Gallagher, Clare; Mooney, Jean; Irvine, Claire; Ducatez, Mariette; Hause, Ben; McGrath, Guy; Ryan, Eoin 2018 2018-02-23 PMC N PMC5782902 29350168.0 10.3201/eid2402.170759 ngs2kh6j 0.488738 Kamau_2019, Kim_D_2016, Zhang_2014, Lu_P_2016 Alsultan_2019, Woo_P_2016, Ducatez_2015
38 Tu_Y_2020 Patient-collected tongue, nasal, and mid-turbinate swabs for SARS-CoV-2 yield equivalent sensitivity to health care worker collected nasopharyngeal swabs Yuan-Po Tu; Rachel Jennings; Brian Hart; Gerald Cangelosi; Rachel Wood; Kevin Wehber; Prateek Verma; Deneen Vojta; Ethan M Berke 2020 2020-04-06 BioRxiv Y 10.1101/2020.04.01.20050005 9efyzmiz 0.487618 Castiglioni_2020, Muniz-Rodriguez_2020, Goka_2014, Polverino_2017, Rossi_2020 Emerson_2013, Nyawanda_2019
39 Dowell_2004 Severe Acute Respiratory Syndrome Coronavirus on Hospital Surfaces Dowell, Scott F.; Simmerman, James M.; Erdman, Dean D.; Wu, Jiunn-Shyan Julian; Chaovavanich, Achara; Javadi, Massoud; Yang, Jyh-Yuan; Anderson, Larry J.; Tong, Suxiang; Ho, Mei Shang 2004 2004-09-01 PMC N PMC7107915 15356778.0 10.1086/422652 22yam3my 0.485526 Deng_2015, Atkinson_2020, Yu_H_2007, Flynn_2018, Navascués_2018 Bekhof_2013, Lee_F_2011, Leong_2004, Pedrosa-Corral_2011
40 Spyridaki_2009 Comparison of four nasal sampling methods for the detection of viral pathogens by RT-PCR—A GA2LEN project Spyridaki, Irini S.; Christodoulou, Ioannis; de Beer, Lieke; Hovland, Vegard; Kurowski, Marcin; Olszewska-Ziąber, Agnieszka; Carlsen, Kai-Håkon; Lødrup-Carlsen, Karin; van Drunen, Cornelis M.; Kowalski, Marek L.; Molenkamp, Richard; Papadopoulos, Nikolaos G. 2009 2009-03-31 PMC N PMC7112903 19041346.0 10.1016/j.jviromet.2008.10.027 6ynbd4rz 0.479001 Garcia–Moliner_2013, Crowe_2014, Choi_2017, DeByle_2012, Albuquerque_2009 Rihkanen_2008, Sails_2009, Gueudin_2003, Lu_Y_2013
41 Wang_2020 SARS-CoV-2 RNA detection of hospital isolation wards hygiene monitoring during the Coronavirus Disease 2019 outbreak in a Chinese hospital Wang, Jie; Feng, Haiting; Zhang, Sheng; Ni, Zuowei; Ni, Lingmei; Chen, Yu; Zhuo, Lixin; Zhong, Zifeng; Qu, Tingting 2020 2020-04-18 PMC Y 10.1016/j.ijid.2020.04.024 40ktyt5q 0.469997 Deng_2015, Oommen_2016, Li_X_2009, Vemulapalli_2009
42 Nawaz_2012 Human Bocaviruses Are Not Significantly Associated with Gastroenteritis: Results of Retesting Archive DNA from a Case Control Study in the UK Nawaz, Sameena; Allen, David J.; Aladin, Farah; Gallimore, Christopher; Iturriza-Gómara, Miren 2012 2012-07-24 COMM-USE N PMC3404102 22848470.0 10.1371/journal.pone.0041346 leedutqo 0.466617 Chieochansin_2010, Li_W_2012, Kamau_2019, Ligozzi_2018, Liu_S_2013 Pedrosa-Corral_2011, Lau_S_2007, Cheng_2008, Haidopoulou_2010
43 To_K_2020 Consistent Detection of 2019 Novel Coronavirus in Saliva To, Kelvin Kai-Wang; Tsang, Owen Tak-Yin; Yip, Cyril Chik-Yan; Chan, Kwok-Hung; Wu, Tak-Chiu; Chan, Jacky Man-Chun; Leung, Wai-Shing; Chik, Thomas Shiu-Hong; Choi, Chris Yau-Chung; Kandamby, Darshana H; Lung, David Christopher; Tam, Anthony Raymond; Poon, Rosana Wing-Shan; Fung, Agnes Yim-Fong; Hung, Ivan Fan-Ngai; Cheng, Vincent Chi-Chung; Chan, Jasper Fuk-Woo; Yuen, Kwok-Yung 2020 2020-02-12 PMC Y PMC7108139 32047895.0 10.1093/cid/ciaa149 emrwcx0m 0.466494 Tallmadge_2008, Myint_1989, Kamau_2019, Yasui_2016 Galmès_2012
44 Tan_L_2020 Duration of viral detection in throat and rectum of a patient with COVID-19 Le Van Tan; Nghiem My Ngoc; Bui Thi Ton That; Le Thi Tam Uyen; Nguyen Thi Thu Hong; Nguyen Thi Phuong Dung; Le Nguyen Truc Nhu; Tran Tan Thanh; Dinh Nguyen Huy Man; Nguyen Thanh Phong; Tran Tinh Hien; Nguyen Thanh Truong; Guy Thwaites; Nguyen Van Vinh Chau 2020 2020-03-16 BioRxiv Y 10.1101/2020.03.07.20032052 q4i9kh65 0.463000 Walker_2010, UNKNOWN_2010, Lu_P_2016, Kim_D_2016, Karlsson_2012 Xu_D_2005, Xing_2020, Park_2007
45 quan_2020 No SARS-CoV-2 in expressed prostatic secretion of patients with coronavirus disease 2019: a descriptive multicentre study in China weihe quan; qingyou zheng; jinfei tian; jun chen; zhigang liu; xiangqiu chen; tao wu; ziliang ji; jinqi tang; hao chu; haijia xu; yong zhao 2020 2020-03-30 BioRxiv Y 10.1101/2020.03.26.20044198 13bvssv1 0.462673 Polverino_2017, Lipsitch_2014, Callison_1999, Choudhury_2011, David_2013 Rockx_2020, Xu_D_2005, Xing_2020
46 Smits_2012 Calicivirus from Novel Recovirus Genogroup in Human Diarrhea, Bangladesh Smits, Saskia L.; Rahman, Mustafizur; Schapendonk, Claudia M.E.; van Leeuwen, Marije; Faruque, Abu S.G.; Haagmans, Bart L.; Endtz, Hubert P.; Osterhaus, Albert D.M.E. 2012 2012-07-23 PMC N PMC3376821 22709854.0 10.3201/eid1807.120344 4k8j7gi7 0.458820 Chieochansin_2010, Kamau_2019, Karlsson_2012, Li_W_2012 Park_2007, Ouattara_2011, Charoenkul_2020
47 McMahon_2004 Detection of hepatitis C virus in the nasal secretions of an intranasal drug-user McMahon, James M; Simm, Malgorzata; Milano, Danielle; Clatts, Michael 2004 2004-05-07 PMC N PMC421742 15132748.0 10.1186/1476-0711-3-6 pwsvhitd 0.458538 Karlsson_2012, Potgieter_1986, Tallmadge_2008, Lu_P_2016, Yasui_2016 Lee_F_2011, Baier_2018, Luchsinger_2012
48 Gagneur_2008 Materno-fetal transmission of human coronaviruses: a prospective pilot study Gagneur, A.; Dirson, E.; Audebert, S.; Vallet, S.; Legrand-Quillien, M. C.; Laurent, Y.; Collet, M.; Sizun, J.; Oger, E.; Payan, C. 2008 2008-03-29 PMC N PMC7087967 18373106.0 10.1007/s10096-008-0505-7 f8dahf0a 0.458071 Kamau_2019, da_Silva_Filho_2012, Pillaiyar_2020, Crowe_2014, Albuquerque_2009 Chu_H_2013, Verbeke_2019, Lau_S_2007
49 Dessau_2009 Coronaviruses in spinal fluid of patients with acute monosymptomatic optic neuritis Dessau, R. B.; Lisby, G.; Frederiksen, J. L. 2009 2009-01-29 PMC N PMC7159732 10442448.0 10.1111/j.1600-0404.1999.tb01043.x 7pxkhgbq 0.457159 Myint_1989, Chieochansin_2010, Dessau_2001, Auewarakul_2005, Majerciak_2018
50 Xiao_2020 Dynamic profile of RT-PCR findings from 301 COVID-19 patients in Wuhan, China: a descriptive study Xiao, Ai Tang; Tong, Yi Xin; Gao, Chun; Zhu, Li; Zhang, Yu Jie; Zhang, Sheng 2020 2020-04-11 PMC Y 10.1016/j.jcv.2020.104346 4jbo82nr 0.457150 Navascués_2018, Sun_H_2018, Choi_2017, Elmore_2019, Bastien_2006 Wu_J_2020, Lescure_2020
51 Chakrabarti_2009 Detection of HIV-1 RNA/DNA and CD4 mRNA in feces and urine from chronic HIV-1 infected subjects with and without anti-retroviral therapy Chakrabarti, Ayan K; Caruso, Lori; Ding, Ming; Shen, Chengli; Buchanan, William; Gupta, Phalguni; Rinaldo, Charles R; Chen, Yue 2009 2009-10-02 COMM-USE N PMC2761414 19799780.0 10.1186/1742-6405-6-20 drcgjjd1 0.456180 Tallmadge_2008, Rice_1992, Compton_2014, Clapham_1991 Vali_2008, Bardhi_2017, Martinez_1993
52 Neske_2009 Detection of WU polyomavirus DNA by real-time PCR in nasopharyngeal aspirates, serum, and stool samples Neske, Florian; Blessing, Kerstin; Pröttel, Anika; Ullrich, Franziska; Kreth, Hans Wolfgang; Weissbrich, Benedikt 2009 2009-02-28 PMC N 19157970.0 10.1016/j.jcv.2008.12.004 3lzh1yy2 0.454988 Durigon_2010, Ligozzi_2018, Song_2010, Mueller_2009
53 Hirsilä_2001 Detection by Reverse Transcription–Polymerase Chain Reaction of Influenza C in Nasopharyngeal Secretions of Adults with a Common Cold Hirsilä, Maija; Kauppila, Jaana; Tuomaala, Katri; Grekula, Birgitta; Puhakka, Tuomo; Ruuskanen, Olli; Ziegler, Thedi 2001 2001-04-15 PMC N PMC7109944 11262210.0 10.1086/319675 1amcsgmj 0.450581 Karlsson_2012, Yasui_2016, Dinh_2011, Kang_2010, Lu_P_2016 Shirato_2007, Pitkäranta_1998, Lee_H_2017, Gueudin_2003
54 Corman_2016 Viral Shedding and Antibody Response in 37 Patients With Middle East Respiratory Syndrome Coronavirus Infection Corman, Victor M.; Albarrak, Ali M.; Omrani, Ali Senosi; Albarrak, Mohammed M.; Farah, Mohamed Elamin; Almasri, Malak; Muth, Doreen; Sieberg, Andrea; Meyer, Benjamin; Assiri, Abdullah M.; Binger, Tabea; Steinhagen, Katja; Lattwein, Erik; Al-Tawfiq, Jaffar; Müller, Marcel A.; Drosten, Christian; Memish, Ziad A. 2016 2016-02-15 PMC N PMC7108065 26565003.0 10.1093/cid/civ951 2n6kqyeo 0.449788 Li_W_2012, Lee_H_2010, Yasui_2016, Coverstone_2019, Tallmadge_2008 Al-Abdely_2019, Luchsinger_2012, Lee_F_2011, Espinosa_2017
55 Woo_P_2010 Resequencing microarray for detection of human adenoviruses in patients with conjunctivitis Woo, Patrick C.Y.; Lau, Susanna K.P.; Choi, Garnet K.Y.; Fung, Hin-Tat; Shek, Kam-Chuen; Miao, Ji; Chan, Benedict Y.L.; Ng, Kenneth H.L.; Ngan, Antonio H.Y.; Ellis-Behnke, Rutledge; Que, Tak-Lun; Kam, Chak-Wah; Yuen, Kwok-Yung 2010 2010-03-31 PMC N 20071220.0 10.1016/j.jcv.2009.12.014 vvbwc4b5 0.448837 Falcone_1997, Dinh_2011, Vemulapalli_2009, Chieochansin_2010
56 Zhou_2005 The design and application of DNA chips for early detection of SARS-CoV from clinical samples Zhou, Yi-ming; Yang, Ren-quan; Tao, Sheng-ce; Li, Ze; Zhang, Qiong; Gao, Hua-fang; Zhang, Zhi-wei; Du, Jian-yu; Zhu, Pei-xuan; Ren, Li-li; Zhang, Liang; Wang, Dong; Guo, Lan; Wang, Yan-bin; Guo, Yong; Zhang, Yan; Zhao, Chuan-zan; Wang, Can; Jiang, Di; Liu, Yan-hua; Yang, Hua-wei; Rong, Li; Zhao, Yan-jun; An, Shuang; Li, Zhe; Fan, Xiao-dong; Wang, Jian-wei; Cheng, Yun; Liu, Ou; Zheng, Zhong; Zuo, Huan-cong; Shan, Quan-zhong; Ruan, Li; Lü, Zhan-xiu; Hung, Tao; Cheng, Jing 2005 2005-06-30 PMC N PMC7108259 15911427.0 10.1016/j.jcv.2004.10.019 uhrvwfyj 0.447219 Myint_1989, Dinh_2011, Zhang_2020, van_Kruijssen_2006, Vemulapalli_2009 Poon_2003, Xu_D_2005, OKBA_2020, Hoteit_2016
57 Deng_2012 High Viral Load of Human Bocavirus Correlates with Duration of Wheezing in Children with Severe Lower Respiratory Tract Infection Deng, Yu; Gu, Xiaoyang; Zhao, Xiaodong; Luo, Jian; Luo, Zhengxiu; Wang, Lijia; Fu, Zhou; Yang, Xiqiang; Liu, Enmei 2012 2012-03-30 COMM-USE N PMC3316689 22479609.0 10.1371/journal.pone.0034353 7u235c96 0.446228 Coverstone_2019, Koff_2020, Durigon_2010, Foulongne_2006, Song_2010 Allander_2007, Verbeke_2019, Kim_J_2011, Lee_F_2011
58 Gangell_2014 Feasibility of parental collected nasal swabs for virus detection in young children with cystic fibrosis Gangell, C.L.; Shackleton, C.; Poreddy, S.; Kappers, J.; Gaydon, J.E.; Sloots, T.P.; Stick, S.M.; Ranganathan, S.C.; Sly, P.D. 2014 2014-12-31 PMC N PMC7105194 24637444.0 10.1016/j.jcf.2014.02.009 nrc1gyvo 0.443940 Karlsson_2012, Polverino_2017, Mondor_2012, Zheng_2020, Ma_X_2020 Chu_H_2013, Banjar_2019, Chen_2014, Gamiño‐Arroyo_2016
59 Smits_2012 High Prevalence of Anelloviruses in Vitreous Fluid of Children With Seasonal Hyperacute Panuveitis Smits, Saskia L.; Manandhar, Anu; van Loenen, Freek B.; van Leeuwen, Marije; Baarsma, G. Seerp; Dorrestijn, Netty; Osterhaus, Albert D. M. E.; Margolis, Todd P.; Verjans, Georges M. G. M. 2012 2012-06-15 PMC N PMC7107317 22492851.0 10.1093/infdis/jis284 c9vg8mlt 0.441741 Auewarakul_2005, Grewelle_2020, Volmer_2010, Zhang_2014, Chieochansin_2010 Galmès_2012, Hwang_2018, Xepapadaki_2004
60 Woelfel_2020 Clinical presentation and virological assessment of hospitalized cases of coronavirus disease 2019 in a travel-associated transmission cluster Roman Woelfel; Victor Max Corman; Wolfgang Guggemos; Michael Seilmaier; Sabine Zange; Marcel A Mueller; Daniela Niemeyer; Patrick Vollmar; Camilla Rothe; Michael Hoelscher; Tobias Bleicker; Sebastian Bruenink; Julia Schneider; Rosina Ehmann; Katrin Zwirglmaier; Christian Drosten; Clemens Wendtner 2020 2020-03-08 BioRxiv Y 10.1101/2020.03.05.20030502 gunn55f9 0.439208 Coverstone_2019, Potgieter_1986, Karlsson_2012, Koff_2020, van_Riel_2007 Gamiño‐Arroyo_2016, Lee_F_2011, Espinosa_2017
61 Wang_2019 Identification of Histoplasma causing an unexplained disease cluster in Matthews Ridge, Guyana Wang, Ji; Zhou, Weimin; Ling, Hua; Dong, Xiaoping; Zhang, Yi; Li, Jiandong; Zhang, Yong; Song, Jingdong; Liu, William J.; Li, Yang; Zhang, Ruiqing; Zhen, Wei; Cai, Kun; Zhu, Shuangli; Wang, Dongyan; Xiao, Jinbo; Tong, Yigang; Liu, Wenli; Song, Lihua; Wu, Wei; Liu, Yang; Zhao, Xiang; Wang, Ruihuan; Ye, Sheng; Wang, Jing; Lu, Roujian; Huang, Baoying; Ye, Fei; Lei, Wenwen; Gao, Rongbao; Shi, Qi; Chen, Cao; Han, Jun; Xu, Wenbo; Gao, George F.; Ma, Xuejun; Wu, Guizhen 2019 2019-12-31 PMC N PMC7148593 10.1016/j.bsheal.2019.12.003 zl7cjs1k 0.437023 Zhang_2020, Chieochansin_2010, Langelier_2017, Li_W_2012, Wang_2013 Galmès_2012, Crawford_2019, Hammerschmitt_2020
62 Wang_2020 Comparison of nasopharyngeal and oropharyngeal swabs for SARS-CoV-2 detection in 353 patients received tests with both specimens simultaneously Wang, Xiong; Tan, Li; Wang, Xu; Liu, Weiyong; Lu, Yanjun; Cheng, Liming; Sun, Ziyong 2020 2020-04-18 PMC Y 10.1016/j.ijid.2020.04.023 dfnc9g2c 0.436264 Durigon_2010, Flynn_2018, Navascués_2018, Klem_2013
63 Nishida_2019 Two cases of primary human parechovirus pneumonia in adults Nishida, Takashi; Ishiguro, Takashi; Takano, Kenji; Isono, Taisuke; Kobayashi, Yoichi; Shimizu, Yoshihiko; Takayanagi, Noboru 2019 2019-12-31 PMC N 10.1016/j.rmcr.2019.100949 wss75xdi 0.436025 Koff_2020, Durigon_2010, Coverstone_2019, Crowe_2014
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66 Piñana_2019 Pulmonary cytomegalovirus (CMV) DNA shedding in allogeneic hematopoietic stem cell transplant recipients: Implications for the diagnosis of CMV pneumonia Piñana, José Luis; Giménez, Estela; Gómez, María Dolores; Pérez, Ariadna; González, Eva María; Vinuesa, Víctor; Hernández-Boluda, Juan Carlos; Montoro, Juan; Salavert, Miguel; Tormo, Mar; Amat, Paula; Moles, Paula; Carretero, Carlos; Balaguer-Roselló, Aitana; Sanz, Jaime; Sanz, Guillermo; Solano, Carlos; Navarro, David 2019 2019-05-31 PMC N PMC7126576 30797790.0 10.1016/j.jinf.2019.02.009 1is0rv6c 0.428004 Potgieter_1986, Chakrabarti_2009, Falcone_1997, Windisch_2013 Lee_H_2017, Iglesias_2017, Poh_K_2019, Waghmare_2013
67 Kainulainen_2010 Recurrent and persistent respiratory tract viral infections in patients with primary hypogammaglobulinemia Kainulainen, Leena; Vuorinen, Tytti; Rantakokko-Jalava, Kaisu; Österback, Riikka; Ruuskanen, Olli 2010 2010-07-31 PMC N PMC7112312 20541246.0 10.1016/j.jaci.2010.04.016 u12aa739 0.428004 Coverstone_2019, Koff_2020, Durigon_2010, Navascués_2018 Lee_F_2011, Gamiño‐Arroyo_2016, Lehtinen_2006, Karhu_2014
68 Fahsbender_2019 Chapparvovirus DNA Found in 4% of Dogs with Diarrhea Fahsbender, Elizabeth; Altan, Eda; Seguin, M. Alexis; Young, Pauline; Estrada, Marko; Leutenegger, Christian; Delwart, Eric 2019 2019-04-27 COMM-USE N PMC6563200 31035625.0 10.3390/v11050398 s1kypjor 0.426578 Li_W_2012, Chieochansin_2010, Kamau_2019, Zhao_2017, Falcone_1997 LI_C_2018, Woo_P_2016, LI_C_2015, Zaher_2020
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70 Isakbaeva_2004 SARS-associated Coronavirus Transmission, United States Isakbaeva, Elmira T.; Khetsuriani, Nino; Beard, R. Suzanne; Peck, Angela; Erdman, Dean; Monroe, Stephan S.; Tong, Suxiang; Ksiazek, Thomas G.; Lowther, Sara; Smith, Indra Pandya; Anderson, Larry J.; Lingappa, Jairam; Widdowson, Marc-Alain 2004 2004-02-23 PMC N PMC3322913 15030687.0 10.3201/eid1002.030734 9g4om4sf 0.424812 Li_W_2012, Coverstone_2019, Kamau_2019, Zhang_2020 Xu_D_2005, Rockx_2020, Xing_2020, Leong_2004
71 Song_2015 Viral Shedding and Environmental Cleaning in Middle East Respiratory Syndrome Coronavirus Infection Song, Joon Young; Cheong, Hee Jin; Choi, Min Joo; Jeon, Ji Ho; Kang, Seong Hee; Jeong, Eun Ju; Yoon, Jin Gu; Lee, Saem Na; Kim, Sung Ran; Noh, Ji Yun; Kim, Woo Joo 2015 2015-12-30 NONCOMM N PMC4716277 26788409.0 10.3947/ic.2015.47.4.252 x11dr866 0.424160 Myint_1989, da_Silva_Filho_2012, Li_W_2012, Navascués_2018 Adney_2014, Al-Abdely_2019, Park_2007, Bin_S_2016
72 Campbell_2010 Respiratory Virus Pneumonia after Hematopoietic Cell Transplantation: Associations Between Viral Load in Bronchoalveolar Lavage, Viral RNA Detection in Serum, and Transplant Outcomes Campbell, Angela P.; Chien, Jason W.; Kuypers, Jane; Englund, Janet A.; Wald, Anna; Guthrie, Katherine A.; Corey, Lawrence; Boeckh, Michael 2010 2010-05-01 PMC N PMC2853730 20350162.0 10.1086/651662 q5msn97r 0.423179 Garcia–Moliner_2013, Davaro_2013, Crowe_2014, Choi_2017, Sun_H_2018 Waghmare_2013, Iglesias_2017, Luchsinger_2012, Choi_2013
73 Christensen_2013 Detection of Spliced mRNA from Human Bocavirus 1 in Clinical Samples from Children with Respiratory Tract Infections Christensen, Andreas; Døllner, Henrik; Skanke, Lars Høsøien; Krokstad, Sidsel; Moe, Nina; Nordbø, Svein Arne 2013 2013-04-23 PMC N PMC3647721 23628409.0 10.3201/eid1904.121775 xad8hust 0.422847 Chieochansin_2010, Majerciak_2018, Dinh_2011, Auewarakul_2005 Verbeke_2019, Lau_S_2007, Shirato_2007
74 Ogimi_2018 Initial High Viral Load Is Associated with Prolonged Shedding of Human Rhinovirus in Allogeneic Hematopoietic Cell Transplant Recipients Ogimi, Chikara; Xie, Hu; Leisenring, Wendy M.; Kuypers, Jane M.; Jerome, Keith R; Campbell, Angela P.; Englund, Janet A.; Boeckh, Michael; Waghmare, Alpana 2018 2018-10-31 None N PMC6239940 30009982.0 10.1016/j.bbmt.2018.07.006 0cu3syiw 0.422168 Lee_N_2007, Li_W_2012, Price_2019, Chakrabarti_2009 Lee_F_2011, Waghmare_2013, Engelmann_2017
75 Prakash_2020 Human Parvovirus 4: A harmless bystander or a pathogen of severe acute respiratory illness Prakash, Shantanu; Shukla, Suruchi; Ramakrishna, Vangala; Mishra, Hricha; Bhagat, Amit K.; Jain, Amita 2020 2020-01-31 PMC N 31605808.0 10.1016/j.ijid.2019.10.001 2jsgn79e 0.421545 Coverstone_2019, Durigon_2010, Lu_P_2016, Chieochansin_2010, Li_W_2012
76 Hung_2004 Viral Loads in Clinical Specimens and SARS Manifestations Hung, I.F.N.; Cheng, V.C.C.; Wu, A.K.L.; Tang, B.S.F.; Chan, K.H.; Chu, C.M.; Wong, M.M.L.; Hui, W.T.; Poon, L.L.M.; Tse, D.M.W.; Chan, K.S.; Woo, P.C.Y.; Lau, S.K.P.; Peiris, J.S.M.; Yuen, K.Y. 2004 2004-09-23 PMC N PMC3320271 15498155.0 10.3201/eid1009.040058 9o2fhi6e 0.421092 Sun_H_2018, da_Silva_Filho_2012, Choi_2017, Lee_N_2007 Lee_F_2011, Espinosa_2017, Hijano_2019, Gamiño‐Arroyo_2016
77 Al_Hosani_2016 Response to Emergence of Middle East Respiratory Syndrome Coronavirus, Abu Dhabi, United Arab Emirates, 2013–2014 Al Hosani, Farida Ismail; Pringle, Kimberly; Al Mulla, Mariam; Kim, Lindsay; Pham, Huong; Alami, Negar N.; Khudhair, Ahmed; Hall, Aron J.; Aden, Bashir; El Saleh, Feda; Al Dhaheri, Wafa; Al Bandar, Zyad; Bunga, Sudhir; Abou Elkheir, Kheir; Tao, Ying; Hunter, Jennifer C.; Nguyen, Duc; Turner, Andrew; Pradeep, Krishna; Sasse, Jurgen; Weber, Stefan; Tong, Suxiang; Whitaker, Brett L.; Haynes, Lia M.; Curns, Aaron; Gerber, Susan I. 2016 2016-07-23 PMC N PMC4918155 27314227.0 10.3201/eid2207.160040 s3m54teu 0.420561 Lim_T_2012, Kim_D_2016, Georgiev_2009, Wang_2014, Abroug_2014 Aleanizy_2017, Hunter_2016, Al-Abdely_2019, Balkhy_2016
78 Wikramaratna_2020 Estimating false-negative detection rate of SARS-CoV-2 by RT-PCR Paul Wikramaratna; Robert S Paton; Mahan Ghafari; Jose Lourenco 2020 2020-04-07 BioRxiv Y 10.1101/2020.04.05.20053355 qolbq8ul 0.419530 Polverino_2017, Schlub_2018, Cheng_2012, Goradia_1988 Sails_2009, OKBA_2020
79 Shimizu_2005 Human Coronavirus NL63 Is Not Detected in the Respiratory Tracts of Children with Acute Kawasaki Disease Shimizu, Chisato; Shike, Hiroko; Baker, Susan C.; Garcia, Francesca; van der Hoek, Lia; Kuijpers, Taco W.; Reed, Sharon L.; Rowley, Anne H.; Shulman, Stanford T.; Talbot, Helen K. B.; Williams, John V.; Burns, Jane C. 2005 2005-11-15 PMC N PMC2888540 16235175.0 10.1086/497170 jnbq29c8 0.418746 Dinh_2011, Jiang_2004, Falcone_1997, Lau_L_2003 Gamiño‐Arroyo_2016, Ouattara_2011, Wu_P_2007
80 Ogawa_2019 The microbiological characteristics of lower respiratory tract infection in patients with neuromuscular disorders: An investigation based on a multiplex polymerase chain reaction to detect viruses and a clone library analysis of the bacterial 16S rRNA gene sequence in sputum samples Ogawa, Masato; Hoshina, Takayuki; Haro, Kaoru; Kumadaki, Tokiko; Ishii, Masahiro; Fujino, Yoshihisa; Fukuda, Kazumasa; Kusuhara, Koichi 2019 2019-10-31 PMC N PMC7105058 30898603.0 10.1016/j.jmii.2019.01.002 6aki8jmf 0.418220 Koff_2020, van_Kruijssen_2006, Coverstone_2019, Karlsson_2012 Karhu_2014, Banjar_2019, Ruohola_2006, Klein_2010
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83 Kujawski_2020 First 12 patients with coronavirus disease 2019 (COVID-19) in the United States Stephanie A. Kujawski; Karen K Wong; Jennifer P. Collins; Lauren Epstein; Marie E. Killerby; Claire M. Midgley; Glen R. Abedi; N. Seema Ahmed; Olivia Almendares; Francisco N. Alvarez; Kayla N. Anderson; Sharon Balter; Vaughn Barry; Karri Bartlett; Karlyn Beer; Michael A. Ben-Aderet; Isaac Benowitz; Holly Biggs; Alison M. Binder; Stephanie R. Black; Brandon Bonin; Catherine M. Brown; Hollianne Bruce; Jonathan Bryant-Genevier; Alicia Budd; Diane Buell; Rachel Bystritsky; Jordan Cates; E. Matt Charles; Kevin Chatham-Stephens; Nora Chea; Howard Chiou; Demian Christiansen; Victoria Chu; Sara Cody; Max Cohen; Erin Conners; Aaron Curns; Vishal Dasari; Patrick Dawson; Traci DeSalvo; George Diaz; Matthew Donahue; Suzanne Donovan; Lindsey M. Duca; Keith Erickson; Mathew D. Esona; Suzanne Evans; Jeremy Falk; Leora R. Feldstein; Martin Fenstersheib; Marc Fischer; Rebecca Fisher; Chelsea Foo; Marielle J. Fricchione; Oren Friedman; Alicia M. Fry; Romeo R. Galang; Melissa M. Garcia; Susa I. Gerber; Graham Gerrard; Isaac Ghinai; Prabhu Gounder; Jonathan Grein; Cheri Grigg; Jeffrey D. Gunzenhauser; Gary I. Gutkin; Meredith Haddix; Aron J. Hall; George Han; Jennifer Harcourt; Kathleen Harriman; Thomas Haupt; Amber Haynes; Michelle Holshue; Cora Hoover; Jennifer C. Hunter; Max W. Jacobs; Claire Jarashow; Michael A. Jhung; Kiran Joshi; Talar Kamali; Shifaq Kamili; Lindsay Kim; Moon Kim; Jan King; Hannah L. Kirking; Amanda Kita-Yarbro; Rachel Klos; Miwako Kobayashi; Anna Kocharian; Kenneth K. Komatsu; Ram Koppaka; Jennifer E. Layden; Yan Li; Scott Lindquist; Stephen Lindstrom; Ruth Link-Gelles; Joana Lively; Michelle Livingston; Kelly Lo; Jennifer Lo; Xiaoyan Lu; Brian Lynch; Larry Madoff; Lakshmi Malapati; Gregory Marks; Mariel Marlow; Glenn E. Mathisen; Nancy McClung; Olivia McGovern; Tristan D. McPherson; Mitali Mehta; Audrey Meier; Lynn Mello; Sung-sil Moon; Margie Morgan; Ruth N. Moro; Janna' Murray; Rekha Murthy; Shannon Novosad; Sara E. Oliver; Jennifer O'Shea; Massimo Pacilli; Clinton R. Paden; Mark A. Pallansch; Manisha Patel; Sajan Patel; Isabel Pedraza; Satish K. Pillai; Talia Pindyck; Ian Pray; Krista Queen; Nichole Quick; Heather Reese; Brian Rha; Heather Rhodes; Susan Robinson; Philip Robinson; Melissa Rolfes; Janell Routh; Rachel Rubin; Sarah L. Rudman; Senthilkumar K. Sakthivel; Sarah Scott; Christopher Shepherd; Varun Shetty; Ethan A. Smith; Shanon Smith; Bryan Stierman; William Stoecker; Rebecca Sunenshine; Regina Sy-Santos; Azaibi Tamin; Ying Tao; Dawn Terashita; Natalie J. Thornburg; Suxiang Tong; Elizabeth Traub; Ahmet Tural; Anna Uehara; Timothy M. Uyeki; Grace Vahey; Jennifer R. Verani; Elsa Villarino; Megan Wallace; Lijuan Wang; John T. Watson; Matthew Westercamp; Brett Whitaker; Sarah Wilkerson; Rebecca C. Woodruff; Jonathan M. Wortham; Tiffany Wu; Amy Xie; Anna Yousaf; Matthew Zahn; Jing Zhang 2020 2020-03-12 BioRxiv Y 10.1101/2020.03.09.20032896 a66sszp2 0.413114 Navascués_2018, Li_W_2012, Chang_2005, Elmore_2019, Chan_2004 Wu_J_2020, Gamiño‐Arroyo_2016, Wu_Q_2020, Lescure_2020
84 GAUTRET_2020 Hydroxychloroquine and Azithromycin as a treatment of COVID-19: preliminary results of an open-label non-randomized clinical trial Philippe GAUTRET; Jean Christophe LAGIER; Philippe PAROLA; Van Thuan HOANG; Line MEDDED; Morgan MAILHE; Barbara DOUDIER; Johan COURJON; Valerie GIORDANENGO; Vera ESTEVES VIEIRA; Herve TISSOT DUPONT; Stephane HONORE; Philippe COLSON; Eric CHABRIERE; Bernard LA SCOLA; Jean Marc ROLAIN; Philippe BROUQUI; Didier RAOULT 2020 2020-03-20 BioRxiv Y 10.1101/2020.03.16.20037135 tdlcb9bf 0.411733 Heymann_2005, Brake_2008, Gonçalves_2020, Lauro_2020, Polverino_2017 Gautret_2020, Lee_F_2011, Basso_2016, Chen_2020
85 Minodier_2019 Risk factors for seasonal influenza virus detection in stools of patients consulting in general practice for acute respiratory infections in France, 2014‐2016 Minodier, Laëtitia; Masse, Shirley; Capai, Lisandru; Blanchon, Thierry; Ceccaldi, Pierre‐Emmanuel; van der Werf, Sylvie; Hanslik, Thomas; Charrel, Remi; Falchi, Alessandra 2019 2019-05-10 COMM-USE N PMC6586184 29144593.0 10.1111/irv.12523 blubu1pw 0.406213 Sun_H_2018, Choi_2017, Largo_2016, Abou-Hamdan_2018, Choudhury_2011
86 Lagier_2020 Testing the repatriated for SARS-Cov2: Should laboratory-based quarantine replace traditional quarantine? Lagier, Jean Christophe; Colson, Philippe; Tissot Dupont, Hervé; Salomon, Jérôme; Doudier, Barbara; Aubry, Camille; Gouriet, Frédérique; Baron, Sophie; Dudouet, Pierre; Flores, Rémi; Ailhaud, Lucie; Gautret, Philippe; Parola, Philippe; La Scola, Bernard; Raoult, Didier; Brouqui, Philippe 2020 2020-03-14 PMC Y 10.1016/j.tmaid.2020.101624 fy65vg05 0.402178 Polverino_2017, Mondor_2012, Griffiths_2010, Tomie_2020, Stenseth_2008 Xu_D_2005, Xing_2020, OKBA_2020
87 Xie_C_2020 Comparison of different samples for 2019 novel coronavirus detection by nucleic acid amplification tests Xie, Chunbao; Jiang, Lingxi; Huang, Guo; Pu, Hong; Gong, Bo; Lin, He; Ma, Shi; Chen, Xuemei; Long, Bo; Si, Guo; Yu, Hua; Jiang, Li; Yang, Xingxiang; Shi, Yi; Yang, Zhenglin 2020 2020-01-01 None Y 10.1016/j.ijid.2020.02.050 ybbnq323 0.400547 Dinh_2011, Vemulapalli_2009, Oba_M_2018, van_Kruijssen_2006, Benson_2008 Alsultan_2019
88 To_K_2020 Temporal profiles of viral load in posterior oropharyngeal saliva samples and serum antibody responses during infection by SARS-CoV-2: an observational cohort study To, Kelvin Kai-Wang; Tsang, Owen Tak-Yin; Leung, Wai-Shing; Tam, Anthony Raymond; Wu, Tak-Chiu; Lung, David Christopher; Yip, Cyril Chik-Yan; Cai, Jian-Piao; Chan, Jacky Man-Chun; Chik, Thomas Shiu-Hong; Lau, Daphne Pui-Ling; Choi, Chris Yau-Chung; Chen, Lin-Lei; Chan, Wan-Mui; Chan, Kwok-Hung; Ip, Jonathan Daniel; Ng, Anthony Chin-Ki; Poon, Rosana Wing-Shan; Luo, Cui-Ting; Cheng, Vincent Chi-Chung; Chan, Jasper Fuk-Woo; Hung, Ivan Fan-Ngai; Chen, Zhiwei; Chen, Honglin; Yuen, Kwok-Yung 2020 2020-03-23 PMC Y 10.1016/s1473-3099(20)30196-1 scc9wee0 0.400166 Choi_2017, Li_W_2012, Navascués_2018, da_Silva_Filho_2012, Falsey_2010 Leong_2004, Memish_2014, Xu_D_2005, Al-Abdely_2019
89 Akmatov_2012 Equivalence of Self- and Staff-Collected Nasal Swabs for the Detection of Viral Respiratory Pathogens Akmatov, Manas K.; Gatzemeier, Anja; Schughart, Klaus; Pessler, Frank 2012 2012-11-14 COMM-USE N PMC3498275 23155387.0 10.1371/journal.pone.0048508 v2wovcqd 0.399284 DeByle_2012, Navascués_2018, Kamau_2019, Chieochansin_2010, da_Silva_Filho_2012 Emerson_2013, Patrucco_2019, Larios_2011
90 Hase_2020 A case of imported COVID-19 diagnosed by PCR-positive lower respiratory specimen but with PCR-negative throat swabs Hase, Ryota; Kurita, Takashi; Muranaka, Emiri; Sasazawa, Hiroki; Mito, Haruki; Yano, Yudai 2020 2020-04-02 PMC N PMC7157961 32238024.0 10.1080/23744235.2020.1744711 ydlix2o7 0.398347 Shah_2017, Lee_N_2020, Petty_2017, Blatt_2017
91 DeByle_2012 Comparison of nasopharyngeal flocked swabs and nasopharyngeal wash collection methods for respiratory virus detection in hospitalized children using real-time polymerase chain reaction DeByle, Carolynn; Bulkow, Lisa; Miernyk, Karen; Chikoyak, Lori; Hummel, Kimberlee Boyd; Hennessy, Thomas; Singleton, Rosalyn 2012 2012-10-31 None N PMC4655598 22728277.0 10.1016/j.jviromet.2012.06.009 9kpr2muk 0.397785 Albuquerque_2009, Crowe_2014, Bellau-Pujol_2005, Myint_2005 Gueudin_2003, Peters_2017, Kalu_2010, Cho_K_2001
92 Cordey_2019 Detection of dicistroviruses RNA in blood of febrile Tanzanian children Cordey, Samuel; Laubscher, Florian; Hartley, Mary-Anne; Junier, Thomas; Pérez-Rodriguez, Francisco J.; Keitel, Kristina; Vieille, Gael; Samaka, Josephine; Mlaganile, Tarsis; Kagoro, Frank; Boillat-Blanco, Noémie; Mbarack, Zainab; Docquier, Mylène; Brito, Francisco; Eibach, Daniel; May, Jürgen; Sothmann, Peter; Aldrich, Cassandra; Lusingu, John; Tapparel, Caroline; D’Acremont, Valérie; Kaiser, Laurent 2019 2019-04-19 COMM-USE N PMC6493270 30999808.0 10.1080/22221751.2019.1603791 k032ikww 0.397144 Auewarakul_2005, Volmer_2010, Chieochansin_2010, Naito_2007, Gardner_2004 Agoti_2019, Galmès_2012, Haidopoulou_2010
93 Mao_Z_2020 The enlightenment from two cases of asymptomatic infection with SARS-CoV-2: is it safe after 14 days of isolation? Mao, Zhi-Qun; Wan, Ren; He, Li-Yi; Hu, Yue-Chun; Chen, Wei 2020 2020-04-03 PMC N 10.1016/j.ijid.2020.03.041 h3imi4tk 0.396968 Atkinson_2020, Shah_2017, Hu_F_2020, Navascués_2018 Timoney_1984, Ouattara_2011, Marlier_2006, Xu_D_2005
94 Lescure_2020 Clinical and virological data of the first cases of COVID-19 in Europe: a case series Lescure, Francois-Xavier; Bouadma, Lila; Nguyen, Duc; Parisey, Marion; Wicky, Paul-Henri; Behillil, Sylvie; Gaymard, Alexandre; Bouscambert-Duchamp, Maude; Donati, Flora; Le Hingrat, Quentin; Enouf, Vincent; Houhou-Fidouh, Nadhira; Valette, Martine; Mailles, Alexandra; Lucet, Jean-Christophe; Mentre, France; Duval, Xavier; Descamps, Diane; Malvy, Denis; Timsit, Jean-François; Lina, Bruno; van-der-Werf, Sylvie; Yazdanpanah, Yazdan 2020 2020-03-27 PMC Y 10.1016/s1473-3099(20)30200-0 6wbrv9o1 0.393698 Lim_T_2012, Kim_D_2016, Ma_X_2020, Georgiev_2009, Zhang_2020 Wu_J_2020, Cao_M_2020, Baier_2018
95 Bergallo_2016 Molecular detection of human parechovirus in under-Five-Year-Old Children with gastroenteritis Bergallo, Massimiliano; Galliano, Ilaria; Montanari, Paola; Rosa Brusin, Martina; Gabiano, Clara 2016 2016-12-31 PMC N PMC7106367 27816019.0 10.1016/j.jcv.2016.10.001 bmc8w3cn 0.393341 Dinh_2011, Lau_L_2003, Jiang_2004, Vemulapalli_2009, van_Kruijssen_2006 Zaher_2020
96 Chen_2012 Real-Time Quantitative Fluorescent Reverse Transcriptase-PCR for Detection of Severe Acute Respiratory Syndrome-Associated Coronavirus RNA Chen, Weijun; Xu, Zuyuan; Mu, Jingsong; He, Bo; Yang, Ling; Lin, Lin; Meng, Shufang; Mu, Feng; Gan, Haixue; Huang, Shengyong; Wen, Jie; Fang, Jianqiu; Wang, Jian 2012 2012-12-01 PMC N PMC7100218 15887978.0 10.1007/bf03260067 8ym56mpv 0.392258 Dinh_2011, Falcone_1997, Vemulapalli_2009, Chen_2016, Lau_L_2003 Poon_2003, Keyaerts_2006, Wu_Q_2004
97 Zlateva_2012 No novel coronaviruses identified in a large collection of human nasopharyngeal specimens using family-wide CODEHOP-based primers Zlateva, Kalina T.; Coenjaerts, Frank E. J.; Crusio, Kelly M.; Lammens, Christine; Leus, Frank; Viveen, Marco; Ieven, Margareta; Spaan, Willy J. M.; Claas, Eric C. J.; Gorbalenya, Alexander E. 2012 2012-09-28 PMC N PMC7087030 23053517.0 10.1007/s00705-012-1487-4 2dsesgof 0.392089 Kamau_2019, Chieochansin_2010, Escutenaire_2006, Pillaiyar_2020, Albuquerque_2009 Vallet_2004, Sipulwa_2016, Zaher_2020
98 Schjelderup_Nilsen_2019 Human adenovirus in nasopharyngeal and blood samples from children with and without respiratory tract infections Schjelderup Nilsen, Hans-Johnny; Nordbø, Svein Arne; Krokstad, Sidsel; Døllner, Henrik; Christensen, Andreas 2019 2019-02-28 PMC N PMC7106418 30594701.0 10.1016/j.jcv.2018.12.005 ky4g47c1 0.390906 Choi_2017, Chieochansin_2010, Kamau_2019, Falcone_1997, Ligozzi_2018 Kalu_2010, Yao_L_2019, Luchsinger_2012, Lee_H_2017
99 van_Elden_2002 Polymerase Chain Reaction Is More Sensitive than Viral Culture and Antigen Testing for the Detection of Respiratory Viruses in Adults with Hematological Cancer and Pneumonia van Elden, Leontine J. R.; van Kraaij, Marian G. J.; Nijhuis, Monique; Hendriksen, Karin A. W.; Dekker, Ad W.; Rozenberg-Arska, Maja; van Loon, Anton M. 2002 2002-01-15 PMC N PMC7109912 11740705.0 10.1086/338238 yottboqs 0.389858 Dinh_2011, Crowe_2014, van_Riel_2007, Bellau-Pujol_2005 Lee_H_2017, Gueudin_2003, Kalu_2010
100 Lau_S_2005 SARS Coronavirus Detection Methods Lau, Susanna K.P.; Che, Xiao-Yan; Woo, Patrick C.Y.; Wong, Beatrice H.L.; Cheng, Vincent C.C.; Woo, Gibson K.S.; Hung, Ivan F.N.; Poon, Rosana W.S.; Chan, Kwok-Hung; Peiris, J.S. Malik; Yuen, Kwok-Yung 2005 2005-07-23 PMC N PMC3371792 16022791.0 10.3201/eid1107.041045 qm3qfvry 0.388855 Lau_L_2003, Elia_2003, Hanaki_2014, Jiang_2004 Blanchard_2011, Luchsinger_2012, Xu_D_2005
101 Jula_2013 Primary and Secondary Human Bocavirus 1 Infections in a Family, Finland Jula, Alma; Waris, Matti; Kantola, Kalle; Peltola, Ville; Söderlund-Venermo, Maria; Hedman, Klaus; Ruuskanen, Olli 2013 2013-08-23 PMC N PMC3739498 23876382.0 10.3201/eid.1908.130074 hhs3owvr 0.385993 Crowe_2014, Garcia–Moliner_2013, Chieochansin_2010, Foulongne_2006 Foulongne_2006, Souza_2009, Haidopoulou_2010, Catry_2004
102 Bin_S_2016 Environmental Contamination and Viral Shedding in MERS Patients During MERS-CoV Outbreak in South Korea Bin, Seo Yu; Heo, Jung Yeon; Song, Min-Suk; Lee, Jacob; Kim, Eun-Ha; Park, Su-Jin; Kwon, Hyeok-il; Kim, Se mi; Kim, Young-il; Si, Young-Jae; Lee, In-Won; Baek, Yun Hee; Choi, Won-Suk; Min, Jinsoo; Jeong, Hye Won; Choi, Young Ki 2016 2016-03-15 PMC N PMC7108026 26679623.0 10.1093/cid/civ1020 wuv10bo9 0.385775 Deng_2015, Karlsson_2012, Lu_P_2016, Kuiken_2011, Navarro-Marí_2012 Adney_2014, Al-Abdely_2019, Vergara-Alert_2017
103 Öhrmalm_2010 Flocked nasal swab versus nasopharyngeal aspirate for detection of respiratory tract viruses in immunocompromised adults: a matched comparative study Öhrmalm, Lars; Wong, Michelle; Rotzén-Östlund, Maria; Norbeck, Oscar; Broliden, Kristina; Tolfvenstam, Thomas 2010 2010-11-26 COMM-USE N PMC3001728 21110854.0 10.1186/1471-2334-10-340 ly8b07no 0.385427 Polverino_2017, Wikramaratna_2020, Vemulapalli_2009, Chieochansin_2010, Callison_1999 Rihkanen_2008, Pedrosa-Corral_2011, Ruohola_2006, Jayaweera_2018
104 Kang_2008 Prevalence of feline herpesvirus 1, feline calicivirus and Chlamydophila felis in clinically normal cats at a Korean animal shelter Kang, Byeong-Teck; Park, Hee-Myung 2008 2008-06-30 PMC N PMC2839100 18487944.0 10.4142/jvs.2008.9.2.207 hjj12rre 0.384296 Ramsauer_2007, Crowe_2014, Li_W_2012, Kamau_2019 Henzel_2012, Sharif_2009, Holst_2006, Pennisi_2015
105 Waghmare_2020 Reliability of self-sampling for accurate assessment of respiratory virus viral and immunologic kinetics Alpana Waghmare; Elizabeth M Krantz; Subhasish Baral; Emma Vasquez; Tillie Loeffelholz; E. Lisa Chung; Urvashi Pandey; Jane Kuypers; Elizabeth R Duke; Keith R Jerome; Alexander L Greninger; Daniel B Reeves; Florian Hladik; E Fabian Cardozo-Ojeda; Michael Boeckh; Joshua T Schiffer 2020 2020-04-06 BioRxiv Y 10.1101/2020.04.03.20051706 89s17ytr 0.383140 Montefiori_2007, Mao_J_2019, Karlsson_2012, Potgieter_1986 Lee_F_2011, Agoti_2019, Espinosa_2017
106 Lieberman_2010 Pooled nasopharyngeal and oropharyngeal samples for the identification of respiratory viruses in adults Lieberman, D.; Lieberman, D.; Shimoni, A.; Keren-Naus, A.; Steinberg, R.; Shemer-Avni, Y. 2010 2010-03-12 PMC N PMC7088032 20221890.0 10.1007/s10096-010-0903-5 nvy0lwt5 0.382282 Dinh_2011, Vemulapalli_2009, Falcone_1997, Pratelli_2003 Souza_2019, Pedrosa-Corral_2011, Lu_Y_2013
107 Long_2020 Diagnosis of the Coronavirus disease (COVID-19): rRT-PCR or CT? Long, Chunqin; Xu, Huaxiang; Shen, Qinglin; Zhang, Xianghai; Fan, Bing; Wang, Chuanhong; Zeng, Bingliang; Li, Zicong; Li, Xiaofen; Li, Honglu 2020 2020-05-31 PMC Y 10.1016/j.ejrad.2020.108961 chln5r8w 0.382087 Jiang_2004, Dinh_2011, Wikramaratna_2020, Lau_L_2003 Lee_H_2017, Sangil_2012
108 Lalueza_2019 Influence of viral load in the outcome of hospitalized patients with influenza virus infection Lalueza, Antonio; Folgueira, Dolores; Muñoz-Gallego, Irene; Trujillo, Hernando; Laureiro, Jaime; Hernández-Jiménez, Pilar; Moral-Jiménez, Noelia; Castillo, Cristina; Ayuso, Blanca; Díaz-Pedroche, Carmen; Torres, Marta; Arrieta, Estibaliz; Arévalo-Cañas, Coral; Madrid, Olaya; Lumbreras, Carlos 2019 2019-02-28 PMC N PMC7102091 30820840.0 10.1007/s10096-019-03514-1 eevouvfq 0.380725 Sun_H_2018, Choi_2017, Granados_2012, Cheng_2017, Yen_C_2019 Lee_F_2011, Loubet_2017, Espinosa_2017, Banjar_2019
109 Huijskens_2013 Evaluation of yield of currently available diagnostics by sample type to optimize detection of respiratory pathogens in patients with a community‐acquired pneumonia Huijskens, Elisabeth G. W.; Rossen, John W. A.; Kluytmans, Jan A. J. W.; van der Zanden, Adri G. M.; Koopmans, Marion 2013 2013-08-20 COMM-USE N PMC4186473 23957707.0 10.1111/irv.12153 jk4ccm03 0.380725 Ogawa_2019, Ligozzi_2018, van_Kruijssen_2006, Li_W_2012, Benson_2008
110 Medema_2020 Presence of SARS-Coronavirus-2 in sewage Gertjan Medema; Leo Heijnen; Goffe Elsinga; Ronald Italiaander; Anke Brouwer 2020 2020-03-30 BioRxiv Y 10.1101/2020.03.29.20045880 fb62dwga 0.379923 Volmer_2010, Callison_1999, Tomie_2020, Brown_1984, Callison_2005 Rockx_2020, Xu_D_2005, Xing_2020, OKBA_2020
111 Xiao_2020 Evidence for gastrointestinal infection of SARS-CoV-2 Fei Xiao; Meiwen Tang; Xiaobin Zheng; Chunna Li; Jianzhong He; Zhongsi Hong; Siwen Huang; Zhenyi Zhang; Xianqi Lin; Zhaoxiong Fang; Renxu Lai; Shoudeng Chen; Jing Liu; Jin Huang; Jinyu Xia; Zhonghe Li; Guanmin Jiang; Ye Liu; Xiaofeng Li; Hong Shan 2020 2020-02-20 BioRxiv Y 10.1101/2020.02.17.20023721 7odpslba 0.376763 Lu_P_2016, Potgieter_1986, Yasui_2016, van_Riel_2007, Tallmadge_2008 Park_2007, Rockx_2020, Xu_D_2005, OKBA_2020
112 Poissy_2014 Kinetics and pattern of viral excretion in biological specimens of two MERS-CoV cases Poissy, J.; Goffard, A.; Parmentier-Decrucq, E.; Favory, R.; Kauv, M.; Kipnis, E.; Mathieu, D.; Guery, B. 2014 2014-10-31 PMC N PMC7106432 25073585.0 10.1016/j.jcv.2014.07.002 nzpkxe4l 0.375942 Coverstone_2019, Koff_2020, Durigon_2010, Luyt_2011, Deng_2015 Al-Abdely_2019, Lee_F_2011, Leong_2004, Xu_D_2005
113 Xing_2020 Prolonged viral shedding in feces of pediatric patients with coronavirus disease 2019 Xing, Yu-Han; Ni, Wei; Wu, Qin; Li, Wen-Jie; Li, Guo-Ju; Wang, Wen-Di; Tong, Jian-Ning; Song, Xiu-Feng; Wing-Kin Wong, Gary; Xing, Quan-Sheng 2020 2020-03-28 PMC Y 10.1016/j.jmii.2020.03.021 3q2bj7cr 0.374481 Kim_D_2016, Deng_2015, Durigon_2010, Coverstone_2019, Li_W_2012 Xing_2020, Xu_D_2005, Park_2007, Leong_2004
114 Li_L_2013 Comparison among nasopharyngeal swab, nasal wash, and oropharyngeal swab for respiratory virus detection in adults with acute pharyngitis Li, Li; Chen, Qiao-Yan; Li, Yun-Ying; Wang, Yan-Fang; Yang, Zi-Feng; Zhong, Nan-Shan 2013 2013-06-20 COMM-USE N PMC3698019 23786598.0 10.1186/1471-2334-13-281 pnvjqeyu 0.374481 Kang_2010, Sun_H_2018, Dinh_2011, Elmore_2019, da_Silva_Filho_2012 Rihkanen_2008, Ruohola_2006, Pedrosa-Corral_2011, Lu_Y_2013
115 Abroug_2014 Family Cluster of Middle East Respiratory Syndrome Coronavirus Infections, Tunisia, 2013 Abroug, Fekri; Slim, Amine; Ouanes-Besbes, Lamia; Kacem, Mohamed-Ali Hadj; Dachraoui, Fahmi; Ouanes, Islem; Lu, Xiaoyan; Tao, Ying; Paden, Clinton; Caidi, Hayat; Miao, Congrong; Al-Hajri, Mohammed Mohammed; Zorraga, Mokhtar; Ghaouar, Wissem; BenSalah, Afif; Gerber, Susan I. 2014 2014-09-23 PMC N PMC4178422 25148113.0 10.3201/eid2009.140378 krclgmc4 0.373322 Lim_T_2012, Kim_D_2016, Wang_2014, Georgiev_2009 Lamers_2016, Aleanizy_2017, Yavarian_2015
116 Ortega_2017 Identification of co-infection by rotavirus and parvovirus in dogs with gastroenteritis in Mexico Ortega, Ariadna Flores; Martínez-Castañeda, José Simón; Bautista-Gómez, Linda G.; Muñoz, Raúl Fajardo; Hernández, Israel Quijano 2017 2017-06-24 None N PMC5628314 28716388.0 10.1016/j.bjm.2017.03.008 rhsne157 0.373322 Ramsauer_2007, Li_W_2012, Kamau_2019, Lu_P_2016 Schwers_1983, Gizzi_2014
117 Wang_2005 Concentration and detection of SARS coronavirus in sewage from Xiao Tang Shan Hospital and the 309th Hospital Wang, Xin-Wei; Li, Jin-Song; Guo, Ting-Kai; Zhen, Bei; Kong, Qing-Xin; Yi, Bin; Li, Zhong; Song, Nong; Jin, Min; Xiao, Wen-Jun; Zhu, Xiu-Mei; Gu, Chang-Qing; Yin, Jing; Wei, Wei; Yao, Wei; Liu, Chao; Li, Jian-Feng; Ou, Guo-Rong; Wang, Min-Nian; Fang, Tong-Yu; Wang, Gui-Jie; Qiu, Yao-Hui; Wu, Huai-Huan; Chao, Fu-Huan; Li, Jun-Wen 2005 2005-09-30 PMC N PMC7112879 15964082.0 10.1016/j.jviromet.2005.03.022 mtofedpw 0.372902 Rice_1992, Kamau_2019, Li_W_2012, Zhang_2020, Yasui_2016 Xu_D_2005, Xing_2020, Leong_2004
118 Fan_Q_2020 Anal swab findings in an infant with COVID‐19 Fan, Qihong; Pan, Yan; Wu, Qingcui; Liu, Shan; Song, Xu; Xie, Zhongguo; Liu, Yang; Zhao, Liang; Wang, Zhonghong; Zhang, Yifei; Wu, Zuchuang; Guan, Lei; Lv, Xiaolong 2020 2020-03-17 NONCOMM N PMC7167876 10.1002/ped4.12186 oxvfxmtr 0.371379 Walker_2010, Shah_2017, Wiwanitkit_2014, Atkinson_2020, Hase_2020
119 Alfaraj_2019 Middle East respiratory syndrome coronavirus intermittent positive cases: Implications for infection control Alfaraj, Sarah H.; Al-Tawfiq, Jaffar A.; Memish, Ziad A. 2019 2019-03-31 PMC N PMC7115256 30352694.0 10.1016/j.ajic.2018.08.020 5emihtwr 0.370649 Polverino_2017, Wikramaratna_2020, Dinh_2011, Klem_2013 Aleanizy_2017, Al-Abdely_2019, Khalid_2014, Al-Tawfiq_2019
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121 Qu_Y_2020 Positive result of Sars-Cov-2 in sputum from a cured patient with COVID-19 Qu, Ye-Min; Kang, En-Ming; Cong, Hai-Yan 2020 2020-03-08 PMC Y 32160971.0 10.1016/j.tmaid.2020.101619 z37athi5 0.366766 Hase_2020, Liu_Y_2020, Shah_2017, Bak_S_2018, Chang_2005 Xu_D_2005, Xing_2020, Rockx_2020, OKBA_2020
122 Feikin_2017 Is Higher Viral Load in the Upper Respiratory Tract Associated With Severe Pneumonia? Findings From the PERCH Study Feikin, Daniel R.; Fu, Wei; Park, Daniel E.; Shi, Qiyuan; Higdon, Melissa M.; Baggett, Henry C.; Brooks, W. Abdullah; Deloria Knoll, Maria; Hammitt, Laura L.; Howie, Stephen R. C.; Kotloff, Karen L.; Levine, Orin S.; Madhi, Shabir A.; Scott, J. Anthony G.; Thea, Donald M.; Adrian, Peter V.; Antonio, Martin; Awori, Juliet O.; Baillie, Vicky L.; DeLuca, Andrea N.; Driscoll, Amanda J.; Ebruke, Bernard E.; Goswami, Doli; Karron, Ruth A.; Li, Mengying; Morpeth, Susan C.; Mwaba, John; Mwansa, James; Prosperi, Christine; Sawatwong, Pongpun; Sow, Samba O.; Tapia, Milagritos D.; Whistler, Toni; Zaman, Khalequ; Zeger, Scott L.; O’ Brien, Katherine L.; Murdoch, David R. 2017 2017-06-15 COMM-USE N PMC5447843 28575373.0 10.1093/cid/cix148 qesjrs37 0.365583 Tallmadge_2008, Price_2019, Coverstone_2019, Pinky_2016 Espinosa_2017, Lee_F_2011, Martin_2008, Deng_2012
123 He_X_2020 Temporal dynamics in viral shedding and transmissibility of COVID-19 Xi He; Eric HY Lau; Peng Wu; Xilong Deng; Jian Wang; Xinxin Hao; Yiu Chung Lau; Jessica Y Wong; Yujuan Guan; Xinghua Tan; Xiaoneng Mo; Yanqing Chen; Baolin Liao; Weilie Chen; Fengyu Hu; Qing Zhang; Mingqiu Zhong; Yanrong Wu; Lingzhai Zhao; Fuchun Zhang; Benjamin J Cowling; Fang Li; Gabriel M Leung 2020 2020-03-18 BioRxiv Y 10.1101/2020.03.15.20036707 eflwztji 0.364586 Mondor_2012, Chen_2018, Li_C_2018, Kenah_2012 Adney_2014, Li_P_2020, Kim_J_2020
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125 Van_Driessche_2017 A Deep Nasopharyngeal Swab Versus Nonendoscopic Bronchoalveolar Lavage for Isolation of Bacterial Pathogens from Preweaned Calves With Respiratory Disease Van Driessche, L.; Valgaeren, B.R.; Gille, L.; Boyen, F.; Ducatelle, R.; Haesebrouck, F.; Deprez, P.; Pardon, B. 2017 2017-04-19 NONCOMM N PMC5435039 28425146.0 10.1111/jvim.14668 elzhww5a 0.363933 Ogawa_2019, Wikramaratna_2020, Varshney_2009, Chin_2015 Jung_2015, Ruohola_2006, Krenke_2016, De_Schutter_2011
126 Gao_Y_2020 Evaluation the auxiliary diagnosis value of antibodies assays for detection of novel coronavirus (SARS-Cov-2) causing an outbreak of pneumonia (COVID-19) Yong Gao; Yi Yuan; Tuan Tuan Li; Wu Xiao Wang; Yong Xiu Li; Ang Li; Feng Ming Han 2020 2020-03-30 BioRxiv Y 10.1101/2020.03.26.20042044 8mx5kowl 0.363089 Navascués_2018, Chang_2005, Li_W_2012, Klem_2013, Ligozzi_2018 OKBA_2020, Liu_L_2020, Xu_D_2005, Lin_D_2020
127 Lupo_2016 Fatal case of acute gastroenteritis with multiple viral coinfections Lupo, Julien; Morel-Baccard, Christine; Michard-Lenoir, Anne-Pascale; Germi, Raphaële; Pothier, Pierre; Ambert-Balay, Katia; Morand, Patrice 2016 2016-01-31 PMC N PMC7129220 26655270.0 10.1016/j.jcv.2015.11.026 y6z2jprq 0.362968 van_Kruijssen_2006, Carroll_2008, Li_Y_2018, Coverstone_2019 Kasupski_1983, Ouattara_2011, Newton_2018, Jung_2015
128 Phan_2013 Novel Human Gammapapillomavirus Species in a Nasal Swab Phan, Tung Gia; Vo, Nguyen P.; Aronen, Matti; Jartti, Laura; Jartti, Tuomas; Delwart, Eric 2013 2013-03-07 COMM-USE N PMC3593334 23516180.0 10.1128/genomea.00022-13 33jthco3 0.362558 Chieochansin_2010, Taboada_2016, Li_D_2019, Auewarakul_2005, Gardner_2004 Liais_2014, Galmès_2012, Fahsbender_2019, Park_2007
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130 Yao_K_2006 Detection of HHV-6B in post-mortem central nervous system tissue of a post-bone marrow transplant recipient: a multi-virus array analysis Yao, Karen; Akyani, Nahid; Donati, Donatella; Sengamalay, Naomi; Fotheringham, Julie; Ghedin, Elodie; Bishop, Michael; Barrett, John; Kashanchi, Fatah; Jacobson, Steven 2006 2006-12-31 PMC N 17276371.0 10.1016/s1386-6532(06)70013-0 pirblwuq 0.361593 Rice_1992, Potgieter_1986, Trobaugh_2017, Tallmadge_2008 Linenberger_1995, Desmons_2013, Lee_H_2017
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132 Piralla_2012 Human parechovirus infections in patients admitted to hospital in Northern Italy, 2008–2010 Piralla, Antonio; Furione, Milena; Rovida, Francesca; Marchi, Antonietta; Stronati, Mauro; Gerna, Giuseppe; Baldanti, Fausto 2012 2012-02-15 PMC N PMC7166678 22337310.0 10.1002/jmv.23197 aj2km7g3 0.357427 Durigon_2010, da_Silva_Filho_2012, Song_2010, Li_W_2012, Kamau_2019
133 Tam_C_2018 Association between semi-quantitative microbial load and respiratory symptoms among Thai military recruits: a prospective cohort study Tam, Clarence C.; Offeddu, Vittoria; Anderson, Kathryn B.; Weg, Alden L.; Macareo, Louis R.; Ellison, Damon W.; Rangsin, Ram; Fernandez, Stefan; Gibbons, Robert V.; Yoon, In-Kyu; Simasathien, Sriluck 2018 2018-09-14 COMM-USE N PMC6137728 30217168.0 10.1186/s12879-018-3358-4 3esrg1jw 0.356350 Koff_2020, Durigon_2010, Deng_2015, van_Kruijssen_2006, Coverstone_2019 Park_2015, Lee_F_2011, Munywoki_2015, Chu_H_2013
134 Lindner_2019 Frequent detection of Saffold cardiovirus in adenoids Lindner, Kira; Ludwig, Michael; Bootz, Friedrich; Reber, Ulrike; Safavieh, Zahrasadat; Eis-Hübinger, Anna Maria; Herberhold, Stephan 2019 2019-07-03 COMM-USE N PMC6608973 31269055.0 10.1371/journal.pone.0218873 d2tfg3af 0.356266 Chieochansin_2010, Karlsson_2012, Coverstone_2019, Kamau_2019, Liu_S_2013 Galmès_2012, Chu_H_2013
135 Hu_X_2020 Factors associated with negative conversion of viral RNA in patients hospitalized with COVID-19 Hu, Xiaowen; Xing, Yuhan; Jia, Jing; Ni, Wei; Liang, Jiwei; Zhao, Dan; Song, Xin; Gao, Ruqin; Jiang, Fachun 2020 2020-04-22 PMC Y 10.1016/j.scitotenv.2020.138812 qrztj94r 0.356224 Myles_2012, Goka_2014, Ho_M_2005, Rossi_2020, Dinh_2006
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137 Sanz_2019 Evaluation of equine coronavirus fecal shedding among hospitalized horses Sanz, Macarena G.; Kwon, SoYoung; Pusterla, Nicola; Gold, Jenifer R.; Bain, Fairfield; Evermann, Jim 2019 2019-02-20 NONCOMM N PMC6430884 30788861.0 10.1111/jvim.15449 6zomiz4g 0.353973 Li_W_2012, Zhang_2020, da_Silva_Filho_2012, Kamau_2019, Flynn_2018 Nemoto_2014, Pusterla_2013, Schaefer_2018, Manship_2019
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142 Lorusso_2019 Discrepancies between feline coronavirus antibody and nucleic acid detection in effusions of cats with suspected feline infectious peritonitis Lorusso, Eleonora; Mari, Viviana; Losurdo, Michele; Lanave, Gianvito; Trotta, Adriana; Dowgier, Giulia; Colaianni, Maria Loredana; Zatelli, Andrea; Elia, Gabriella; Buonavoglia, Domenico; Decaro, Nicola 2019 2019-08-31 PMC N PMC7111774 29113645.0 10.1016/j.rvsc.2017.10.004 io9fvy58 0.350866 Lee_H_2010, Vemulapalli_2009, Elia_2003, Dinh_2011, Fan_Q_2012 Barker_2017, Günther_2018
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144 Ku_D_2016 Ability of device to collect bacteria from cough aerosols generated by adults with cystic fibrosis Ku, David N.; Ku, Sarah K.; Helfman, Beth; McCarty, Nael A.; Wolff, Bernard J.; Winchell, Jonas M.; Anderson, Larry J. 2016 2016-08-05 COMM-USE N PMC5054809 27781088.0 10.12688/f1000research.9251.1 au5ezq7z 0.349666 Howie_2014, El-Seedy_2016, Koff_2020, Curran_2010 Wainwright_2009, Knibbs_2014, Patrucco_2019, Karhu_2014
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146 Chen_2020 The Roles of Bacteria and Viruses in Bronchiectasis Exacerbation: A Prospective Study Chen, Chun-Lan; Huang, Yan; Yuan, Jing-Jing; Li, Hui-Min; Han, Xiao-Rong; Martinez-Garcia, Miguel Angel; de la Rosa-Carrillo, David; Chen, Rong-chang; Guan, Wei-Jie; Zhong, Nan-Shan 2020 2020-04-08 PMC N 10.1016/j.arbres.2019.12.010 dt115y7c 0.348864 Choi_2017, Koff_2020, Coverstone_2019, Sun_H_2018, Fry_A_2007 Lee_F_2011, Jung_2015, Janahi_2017, Wilkinson_2006
147 Preiksaitis_2015 A patient self-collection method for longitudinal monitoring of respiratory virus infection in solid organ transplant recipients Preiksaitis, Carl M.; Kuypers, Jane M.; Fisher, Cynthia E.; Campbell, Angela P.; Jerome, Keith R.; Huang, Meei-Li; Boeckh, Michael; Limaye, Ajit P. 2015 2015-01-31 None N PMC4629250 25464966.0 10.1016/j.jcv.2014.10.021 f7lxlnwi 0.348743 Crowe_2014, Garcia–Moliner_2013, Choi_2017, Albuquerque_2009, da_Silva_Filho_2012 Lee_F_2011, Chu_H_2013, Baier_2018, Banjar_2019
148 Jeong_2014 Comparison of sputum and nasopharyngeal swabs for detection of respiratory viruses Jeong, Ji Hun; Kim, Kyung Hee; Jeong, Sung Hwan; Park, Jeong Woong; Lee, Sang Min; Seo, Yiel Hea 2014 2014-05-06 PMC N PMC7166652 24797344.0 10.1002/jmv.23937 12x5cc8i 0.346990 Durigon_2010, Kamau_2019, da_Silva_Filho_2012, Albuquerque_2009, Flynn_2018
149 Manning_2007 Comparison of Tissue Distribution, Persistence, and Molecular Epidemiology of Parvovirus B19 and Novel Human Parvoviruses PARV4 and Human Bocavirus Manning, Ashleigh; Willey, Samantha J.; Bell, Jeanne E.; Simmonds, Peter 2007 2007-05-01 PMC N PMC7109978 17397006.0 10.1086/513280 8y7218oj 0.346990 Tallmadge_2008, Chieochansin_2010, Kamau_2019, Crowe_2014 Kantola_2008, Ledesma-Feliciano_2019, Cavalcante_2018
150 Garcia_2020 Rapid diagnosis of SARS-CoV-2 infection by detecting IgG and IgM antibodies with an immunochromatographic device: a prospective single-center study Felipe Perez Garcia; Ramon Perez Tanoira; Juan Pedro Romanyk Cabrera; Teresa Arroyo Serrano; Peña Gomez Herruz; Juan Cuadros Gonzalez 2020 2020-04-15 BioRxiv Y 10.1101/2020.04.11.20062158 t6rs1i7b 0.346207 Wikramaratna_2020, Chang_2005, Varshney_2009, Polverino_2017 Lorusso_2019, OKBA_2020, Liu_L_2020, Saijo_2005
151 Vanspauwen_2013 Mimivirus is not a frequent cause of ventilator‐associated pneumonia in critically ill patients Vanspauwen, M.J.; Schnabel, R.M.; Bruggeman, C.A.; Drent, M.; van Mook, W.N.K.A; Bergmans, D.C.J.J.; Linssen, C.F.M. 2013 2013-07-16 PMC N PMC7166740 23861144.0 10.1002/jmv.23655 2fsk7zky 0.345763 Durigon_2010, Deng_2015, Nishida_2019, Song_2010
152 Lee_N_2009 Viral Loads and Duration of Viral Shedding in Adult Patients Hospitalized with Influenza Lee, Nelson; Chan, Paul K. S.; Hui, David S. C.; Rainer, Timothy H.; Wong, Eric; Choi, Kin-Wing; Lui, Grace C. Y.; Wong, Bonnie C. K.; Wong, Rita Y. K.; Lam, Wai-Yip; Chu, Ida M. T.; Lai, Raymond W. M.; Cockram, Clive S.; Sung, Joseph J. Y. 2009 2009-08-01 PMC N PMC7110250 19591575.0 10.1086/600383 2atq43ma 0.344890 Granados_2012, Choi_2017, Sun_H_2018, Verduyn_2019, Fry_A_2007 Lee_F_2011, Espinosa_2017, Loubet_2017, Falsey_2014
153 de_Graaf_2017 Norovirus Infection in Harbor Porpoises de Graaf, Miranda; Bodewes, Rogier; van Elk, Cornelis E.; van de Bildt, Marco; Getu, Sarah; Aron, Georgina I.; Verjans, Georges M.G.M.; Osterhaus, Albert D.M.E.; van den Brand, Judith M.A.; Kuiken, Thijs; Koopmans, Marion P.G. 2017 2017-01-23 None N PMC5176230 27983498.0 10.3201/eid2301.161081 gmoob2h6 0.344310 Chieochansin_2010, Sonntag_2009, Lu_P_2016, Salem_2017 Alfieri_2016, Crawford_2019, Charoenkul_2020
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155 Esposito_2013 Impact of rhinovirus nasopharyngeal viral load and viremia on severity of respiratory infections in children Esposito, S.; Daleno, C.; Scala, A.; Castellazzi, L.; Terranova, L.; Sferrazza Papa, S.; Longo, M. R.; Pelucchi, C.; Principi, N. 2013 2013-07-28 PMC N PMC7088146 23893065.0 10.1007/s10096-013-1926-5 wb1enp2b 0.340784 Sun_H_2018, Cheng_2017, Yen_C_2019, Granados_2012 Lee_F_2011, Espinosa_2017, Gamiño‐Arroyo_2016, Chu_H_2013
156 Edridge_2019 Viral Metagenomics on Cerebrospinal Fluid Edridge, Arthur W. D.; Deijs, Martin; van Zeggeren, Ingeborg E.; Kinsella, Cormac M.; Jebbink, Maarten F.; Bakker, Margreet; van de Beek, Diederik; Brouwer, Matthijs C.; van der Hoek, Lia 2019 2019-04-30 COMM-USE N PMC6562652 31052348.0 10.3390/genes10050332 8hzrv06m 0.340480 Rice_1992, Auewarakul_2005, Payne_2017, Majerciak_2018, Trobaugh_2017 Li_C_2020, Galmès_2012, Gu_J_2007
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158 Guery_2013 Clinical features and viral diagnosis of two cases of infection with Middle East Respiratory Syndrome coronavirus: a report of nosocomial transmission Guery, Benoit; Poissy, Julien; el Mansouf, Loubna; Séjourné, Caroline; Ettahar, Nicolas; Lemaire, Xavier; Vuotto, Fanny; Goffard, Anne; Behillil, Sylvie; Enouf, Vincent; Caro, Valérie; Mailles, Alexandra; Che, Didier; Manuguerra, Jean-Claude; Mathieu, Daniel; Fontanet, Arnaud; van der Werf, Sylvie 2013 2013-07-05 PMC Y PMC7159298 23727167.0 10.1016/s0140-6736(13)60982-4 4k8306w0 0.338421 Kim_D_2016, Deng_2015, Lim_T_2012, Esswein_2004, Ma_X_2020 Khalid_2014, Gamiño‐Arroyo_2016, Lescure_2020, Al-Abdely_2019
159 Azadeh_2018 Comparison of Respiratory Pathogen Detection in Upper versus Lower Respiratory Tract Samples Using the BioFire FilmArray Respiratory Panel in the Immunocompromised Host Azadeh, Natalya; Sakata, Kenneth K.; Saeed, Ali; Mullon, John J.; Grys, Thomas E.; Limper, Andrew H.; Binnicker, Matthew J. 2018 2018-04-05 COMM-USE N PMC5907482 29849830.0 10.1155/2018/2685723 k676puoq 0.338279 Bastien_2006, Sun_H_2018, DeByle_2012, Gueudin_2003, Ligozzi_2018 Schnee_2017, Luchsinger_2012, Kilic_2020, Lee_H_2017
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162 Jiang_2020 Application and optimization of RT-PCR in diagnosis of SARS-CoV-2 infection Guanmin Jiang; Xiaoshuai Ren; Yan Liu; Hongtao Chen; Wei Liu; Zhaowang Guo; Yaqin Zhang; Chaoqun Chen; Jianhui Zhou; Qiang Xiao; Hong Shan 2020 2020-02-27 BioRxiv Y 10.1101/2020.02.25.20027755 65plab8b 0.335513 Jiang_2004, Lau_L_2003, Dinh_2011, van_Kruijssen_2006, Vemulapalli_2009 OKBA_2020, Poon_2003, Xing_2020
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178 Kossyvakis_2015 Laboratory Investigation and Phylogenetic Analysis of an Imported Middle East Respiratory Syndrome Coronavirus Case in Greece Kossyvakis, Athanasios; Tao, Ying; Lu, Xiaoyan; Pogka, Vasiliki; Tsiodras, Sotirios; Emmanouil, Mary; Mentis, Andreas F.; Tong, Suxiang; Erdman, Dean D.; Antoniadis, Antonios 2015 2015-04-28 COMM-USE N PMC4412533 25919137.0 10.1371/journal.pone.0125809 z535gkg3 0.328384 Dinh_2011, Kamau_2019, Zhang_2020, Karlsson_2012, Rice_1992 Mat-Rahim_2015, Zaher_2020, Cotten_2013
179 Lo_I_2020 Evaluation of SARS-CoV-2 RNA shedding in clinical specimens and clinical characteristics of 10 patients with COVID-19 in Macau Lo, Iek Long; Lio, Chon Fu; Cheong, Hou Hon; Lei, Chin Ion; Cheong, Tak Hong; Zhong, Xu; Tian, Yakun; Sin, Nin Ngan 2020 2020-03-15 COMM-USE Y PMC7098032 10.7150/ijbs.45357 ouca1bol 0.327467 Li_W_2012, Navascués_2018, Gong_2020, Tomie_2020, Seong_2016 Xu_D_2005, Xing_2020, Lescure_2020, Wu_J_2020
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181 Yondon_2014 Equine Influenza A(H3N8) Virus Isolated from Bactrian Camel, Mongolia Yondon, Myagmarsukh; Zayat, Batsukh; Nelson, Martha I.; Heil, Gary L.; Anderson, Benjamin D.; Lin, Xudong; Halpin, Rebecca A.; McKenzie, Pamela P.; White, Sarah K.; Wentworth, David E.; Gray, Gregory C. 2014 2014-12-23 PMC N PMC4257804 25418532.0 10.3201/eid2012.140435 hc7efqsg 0.325664 Lu_P_2016, Yasui_2016, van_Riel_2007, Walker_2010, Hong-Wu_2015 Balasuriya_2013, Woo_P_2016, Park_2007, Blum_2010
182 Altan_2019 Viruses in Horses with Neurologic and Respiratory Diseases Altan, Eda; Li, Yanpeng; Sabino-Santos Jr, Gilberto; Sawaswong, Vorthon; Barnum, Samantha; Pusterla, Nicola; Deng, Xutao; Delwart, Eric 2019 2019-10-14 COMM-USE N PMC6832430 31614994.0 10.3390/v11100942 3f8xm8de 0.325606 Crowe_2014, Kamau_2019, Chieochansin_2010, Li_W_2012, van_Riel_2007 Woo_P_2016, Nemoto_2014, Pusterla_2013, Schaefer_2018
183 Jevšnik_2013 Detection of human coronaviruses in simultaneously collected stool samples and nasopharyngeal swabs from hospitalized children with acute gastroenteritis Jevšnik, Monika; Steyer, Andrej; Zrim, Tamara; Pokorn, Marko; Mrvič, Tatjana; Grosek, Štefan; Strle, Franc; Lusa, Lara; Petrovec, Miroslav 2013 2013-02-05 COMM-USE N PMC3610273 23379823.0 10.1186/1743-422x-10-46 yrqpq9cf 0.325483 Choi_2017, Sun_H_2018, Fry_A_2007, Ackerson_2019, Bastien_2006 Lau_S_2007, Haidopoulou_2010, Lu_Y_2013, Gamiño‐Arroyo_2016
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