| 1 |
Zhang_2011 |
Spliced Leader RNAs, Mitochondrial Gene Frameshifts and Multi-Protein Phylogeny Expand Support for the Genus Perkinsus as a Unique Group of Alveolates |
Zhang, Huan; Campbell, David A.; Sturm, Nancy R.; Dungan, Christopher F.; Lin, Senjie |
2011 |
2011-05-24 |
COMM-USE |
N |
PMC3101222 |
21629701.0 |
10.1371/journal.pone.0019933 |
ee7lhyzr |
0.755174 |
Krause_1987, Li_D_2019, Firth_2009 |
Milhausen_1984, Firth_2009, Goldberg_1991 |
| 2 |
Krause_2019 |
tailfindr: Alignment-free poly(A) length measurement for Oxford Nanopore RNA and DNA sequencing |
Maximilian Krause; Adnan M. Niazi; Kornel Labun; Yamila N. Torres Cleuren; Florian S. Müller; Eivind Valen |
2019 |
2019-03-25 |
BioRxiv |
N |
|
|
10.1101/588343 |
cq7g8azh |
0.703073 |
Price_2019, Krause_1987 |
van_Ooij_2006 |
| 3 |
Gibson_2011 |
Chapter fifteen Enzymatic Assembly of Overlapping DNA Fragments |
Gibson, Daniel G. |
2011 |
2011-12-31 |
PMC |
N |
PMC7149801 |
21601685.0 |
10.1016/b978-0-12-385120-8.00015-2 |
1w54xw02 |
0.618962 |
Stork_2011, Otsuka_1999 |
|
| 4 |
Cooper_2014 |
Ribonuclease L and metal-ion–independent endoribonuclease cleavage sites in host and viral RNAs |
Cooper, Daphne A.; Jha, Babal K.; Silverman, Robert H.; Hesselberth, Jay R.; Barton, David J. |
2014 |
2014-02-05 |
None |
N |
PMC4005677 |
24500209.0 |
10.1093/nar/gku118 |
btbv4rq0 |
0.607618 |
Stork_2011, Pong_2011, Rice_1992, Lin_X_2015, Chen_2013 |
YU_W_1995, Bhullar_2014 |
| 5 |
Lenstra_1988 |
Synthesis of long cDNA from viral RNA template |
Lenstra, J.A.; De Groot, R.J.; Jacobs, L.; Kusters, J.G.; Niesters, H.G.M.; Van Der Zeijst, B.A.M. |
1988 |
1988-06-30 |
PMC |
N |
|
3192156.0 |
10.1016/0735-0651(88)90017-9 |
rd61t7ln |
0.536500 |
Stork_2011, Majerciak_2018, An_S_1998 |
Nowak_1984 |
| 6 |
Price_2019 |
Novel splicing and open reading frames revealed by long-read direct RNA sequencing of adenovirus transcripts |
Alexander M. Price; Katharina E. Hayer; Daniel P. Depledge; Angus C. Wilson; Matthew D. Weitzman |
2019 |
2019-12-13 |
BioRxiv |
N |
|
|
10.1101/2019.12.13.876037 |
2fcl6f4i |
0.534434 |
Lamb_1991, Rice_1992, Stork_2011 |
Tzeng_2006, Bhullar_2014 |
| 7 |
Sutton_1986 |
Evidence for Trans splicing in trypanosomes |
Sutton, Richard E.; Boothroyd, John C. |
1986 |
1986-11-21 |
PMC |
N |
|
3022935.0 |
10.1016/0092-8674(86)90617-3 |
0fu5h64z |
0.530834 |
Krause_1987, Lamb_1991, Morikawa_1992 |
Gopinath_2015 |
| 8 |
Oberbeckmann_2020 |
Ruler elements in chromatin remodelers set nucleosome array spacing and phasing |
Elisa Oberbeckmann; Vanessa Niebauer; Shinya Watanabe; Lucas Farnung; Manuela Moldt; Andrea Schmid; Patrick Cramer; Craig L. Peterson; Sebastian Eustermann; Karl-Peter Hopfner; Philipp Korber |
2020 |
2020-02-29 |
BioRxiv |
N |
|
|
10.1101/2020.02.28.969618 |
5hkd80eh |
0.523529 |
|
Sarnowska_2007 |
| 9 |
Wu_H_2013 |
Regulation of Coronaviral Poly(A) Tail Length during Infection |
Wu, Hung-Yi; Ke, Ting-Yung; Liao, Wei-Yu; Chang, Nai-Yun |
2013 |
2013-07-29 |
COMM-USE |
N |
PMC3726627 |
23923003.0 |
10.1371/journal.pone.0070548 |
4qu7fiwm |
0.509025 |
Banerjee_2001, Chen_2017, Jendrach_2014, Krause_1987, Morikawa_1992 |
|
| 10 |
Nallagatla_2013 |
Native Tertiary Structure and Nucleoside Modifications Suppress tRNA’s Intrinsic Ability to Activate the Innate Immune Sensor PKR |
Nallagatla, Subba Rao; Jones, Christie N.; Ghosh, Saikat Kumar B.; Sharma, Suresh D.; Cameron, Craig E.; Spremulli, Linda L.; Bevilacqua, Philip C. |
2013 |
2013-03-04 |
COMM-USE |
N |
PMC3587421 |
23483938.0 |
10.1371/journal.pone.0057905 |
d0a8oib4 |
0.504846 |
Stork_2011 |
|
| 11 |
Olia_2008 |
A shifty stop for a hairy tail |
Olia, Adam S.; Cingolani, Gino |
2008 |
2008-11-01 |
PMC |
N |
PMC2779026 |
18826406.0 |
10.1111/j.1365-2958.2008.06434.x |
o2zjszj1 |
0.484696 |
Morikawa_1992, Hatfield_1990, Firth_2009 |
|
| 12 |
Kruse_2011 |
A novel synthesis and detection method for cap-associated adenosine modifications in mouse mRNA |
Kruse, Susanne; Zhong, Silin; Bodi, Zsuzsanna; Button, James; Alcocer, Marcos J. C.; Hayes, Christopher J.; Fray, Rupert |
2011 |
2011-10-24 |
NONCOMM |
N |
PMC3216607 |
22355643.0 |
10.1038/srep00126 |
69vuc6l9 |
0.470767 |
Krause_1987, An_S_1998, Lai_M_2005, Hatfield_1990 |
Gopinath_2015, Byszewska_2015 |
| 13 |
Peng_2016 |
Characterization of the Role of Hexamer AGUAAA and Poly(A) Tail in Coronavirus Polyadenylation |
Peng, Yu-Hui; Lin, Ching-Houng; Lin, Chao-Nan; Lo, Chen-Yu; Tsai, Tsung-Lin; Wu, Hung-Yi |
2016 |
2016-10-19 |
COMM-USE |
N |
PMC5070815 |
27760233.0 |
10.1371/journal.pone.0165077 |
kreuzo0j |
0.459501 |
Morikawa_1992, Krause_1987, Stork_2011 |
van_Ooij_2006 |
| 14 |
Schwer_1987 |
Discontinuous transcription or RNA processing of vaccinia virus late messengers results in a 5′ poly(A) leader |
Schwer, Beate; Visca, Paolo; Vos, Jan C.; Stunnenberg, Hendrik G. |
1987 |
1987-07-17 |
PMC |
N |
|
3594569.0 |
10.1016/0092-8674(87)90212-1 |
63160t7f |
0.456894 |
Krause_1987, Morikawa_1992, Bertholet_1987, An_S_1998, Banerjee_2001 |
Nowak_1984 |
| 15 |
Milhausen_1984 |
Identification of a small rna containing the trypanosome spliced leader: A donor of shared 5′ sequences of trypanosomatid mRNAs? |
Milhausen, Michael; Nelson, Richard G.; Sather, Susan; Selkirk, Murray; Agabian, Nina |
1984 |
1984-10-31 |
PMC |
N |
PMC7133438 |
6091897.0 |
10.1016/0092-8674(84)90267-8 |
5q8tvowp |
0.417430 |
Krause_1987, Lamb_1991, Bertholet_1987, Morikawa_1992, Firth_2009 |
Baric_1985, Parsons_1984 |
| 16 |
Majerciak_2018 |
Detection of Viral RNA Splicing in Diagnostic Virology |
Majerciak, Vladimir; Zheng, Zhi-Ming |
2018 |
2018-11-10 |
PMC |
N |
PMC7121103 |
|
10.1007/978-3-319-95111-9_15 |
86ptuyn8 |
0.410181 |
Rice_1992, Banerjee_2001, Lamb_1991, Stork_2011 |
Masante_2015 |
| 17 |
Longhini_2016 |
Chemo-enzymatic synthesis of site-specific isotopically labeled nucleotides for use in NMR resonance assignment, dynamics and structural characterizations |
Longhini, Andrew P.; LeBlanc, Regan M.; Becette, Owen; Salguero, Carolina; Wunderlich, Christoph H.; Johnson, Bruce A.; D'Souza, Victoria M.; Kreutz, Christoph; Dayie, T. Kwaku |
2016 |
2016-04-07 |
NONCOMM |
N |
PMC4824079 |
26657632.0 |
10.1093/nar/gkv1333 |
uhhtvdif |
0.395071 |
Lamb_1991, Morikawa_1992, Krause_1987 |
|
| 18 |
Kim_D_2020 |
The architecture of SARS-CoV-2 transcriptome |
Dongwan Kim; Joo-Yeon Lee; Jeong-Sun Yang; Jun Won Kim; V. Narry Kim; Hyeshik Chang |
2020 |
2020-03-14 |
BioRxiv |
Y |
|
|
10.1101/2020.03.12.988865 |
wt4pxu08 |
0.385639 |
Rice_1992, Price_2019, Lamb_1991, Krause_1987 |
|
| 19 |
Kempf_2015 |
Picornavirus RNA polyadenylation by 3Dpol, the viral RNA-dependent RNA polymerase |
Kempf, Brian J.; Barton, David J. |
2015 |
2015-08-03 |
None |
N |
PMC4801031 |
25559071.0 |
10.1016/j.virusres.2014.12.030 |
16qy4j1s |
0.363745 |
Rice_1992, Stork_2011, Ryu_W_2017 |
Bhullar_2014, Xia_H_2015 |
| 20 |
Eun_A_2000 |
Simultaneous quantitation of two orchid viruses by the TaqMan® real-time RT-PCR |
Eun, Alvin Jin-Cherng; Seoh, Mui-Leng; Wong, Sek-Man |
2000 |
2000-06-30 |
PMC |
N |
|
10856762.0 |
10.1016/s0166-0934(00)00161-0 |
sdgiyrzm |
0.363012 |
Majerciak_2018, Chen_2013 |
|
| 21 |
van_Ooij_2006 |
Polyadenylation of genomic RNA and initiation of antigenomic RNA in a positive-strand RNA virus are controlled by the same cis-element |
van Ooij, Mark J. M.; Polacek, Charlotta; Glaudemans, Dirk H. R. F.; Kuijpers, Judith; van Kuppeveld, Frank J. M.; Andino, Raul; Agol, Vadim I.; Melchers, Willem J. G. |
2006 |
2006-05-31 |
PMC |
N |
PMC1474053 |
16738134.0 |
10.1093/nar/gkl349 |
4s71mh8j |
0.343337 |
Stork_2011, Rice_1992, Payne_2017 |
Bhullar_2014 |
| 22 |
Jani_2012 |
In vitro Transcription and Capping of Gaussia Luciferase mRNA Followed by HeLa Cell Transfection |
Jani, Bhairavi; Fuchs, Ryan |
2012 |
2012-03-26 |
PMC |
N |
PMC3460589 |
22473375.0 |
10.3791/3702 |
1m8uazo3 |
0.325934 |
Stork_2011, Chen_2013, Banerjee_2001, Lin_X_2015, Mizutani_2000 |
Baker_1990, Adams_2003 |
| 23 |
Lo_C_2019 |
Interaction of coronavirus nucleocapsid protein with the 5′‐ and 3′‐ends of the coronavirus genome is involved in genome circularization and negative‐strand RNA synthesis |
Lo, Chen‐Yu; Tsai, Tsung‐Lin; Lin, Chao‐Nan; Lin, Ching‐Hung; Wu, Hung‐Yi |
2019 |
2019-05-08 |
PMC |
N |
PMC7164124 |
31034708.0 |
10.1111/febs.14863 |
ap0w40vn |
0.316467 |
Stork_2011 |
|
| 24 |
Li_C_2007 |
A Sabin 1 poliovirus-based vaccine vector transfects Vero cells with high efficiency |
Li, Changgui; Han, Wei; Zhang, Yingqi; Wang, Junzhi |
2007 |
2007-07-01 |
PMC |
N |
PMC2267503 |
19003009.0 |
10.1007/s10616-007-9085-0 |
aw1g82bc |
0.313851 |
Rice_1992 |
|
| 25 |
Diwan_2018 |
Wobbling Forth and Drifting Back: The Evolutionary History and Impact of Bacterial tRNA Modifications |
Diwan, Gaurav D; Agashe, Deepa |
2018 |
2018-05-28 |
NONCOMM |
N |
PMC6063277 |
29846694.0 |
10.1093/molbev/msy110 |
igpd93oh |
0.303720 |
Lamb_1991, Morikawa_1992, Krause_1987 |
Belcourt_1990, Popow_2012 |
| 26 |
Limanskaya_2013 |
Potential thermosensitive riboswitches in the genome of Salmonella |
Limanskaya, O. Yu.; Murtazaeva, L. A.; Limanskii, A. P. |
2013 |
2013-10-11 |
PMC |
N |
PMC7089174 |
|
10.3103/s009545271305006x |
7fbzbxa2 |
0.301135 |
Rice_1992, Staple_2005, Stork_2011, Liu_Y_2009, Gorbalenya_1988 |
Limanskaya_2013 |
| 27 |
Giegé_1993 |
The TYMV tRNA-like structure |
Giegé, R; Florentz, C; Dreher, TW |
1993 |
1993-12-31 |
PMC |
N |
PMC7130797 |
8268257.0 |
10.1016/0300-9084(93)90063-x |
8z0xypmf |
0.300813 |
Martínez-Salas_2008, Gorbalenya_1988, Stork_2011 |
Gopinath_2015 |