Topic 13 -- Abstracts with Biological Entities (English) - 75 Topics / Sub-Topic Model 19 - 15 Topics

cite ad title authors publish year publish time dataset abstract mentions covid pmcid pubmed id doi cord uid topic weight Similarity scispacy Similarity specter
1 Lee_N_2010 Cooperative translocation enhances the unwinding of duplex DNA by SARS coronavirus helicase nsP13 Lee, Na-Ra; Kwon, Hyun-Mi; Park, Kkothanahreum; Oh, Sangtaek; Jeong, Yong-Joo; Kim, Dong-Eun 2010 2010-07-29 NONCOMM N PMC2995068 20671029.0 10.1093/nar/gkq647 1k99yv4i 0.882391 Stork_2011, Pong_2011, Gorbalenya_1988, Herold_2001 Adedeji_2012, Reynolds_2015
2 Wang_2012 Identification and characterization of RNA duplex unwinding and ATPase activities of an alphatetravirus superfamily 1 helicase Wang, Qinrong; Han, Yajuan; Qiu, Yang; Zhang, Shaoqiong; Tang, Fenfen; Wang, Yan; Zhang, Jiamin; Hu, Yuanyang; Zhou, Xi 2012 2012-11-25 PMC N PMC7111927 22995190.0 10.1016/j.virol.2012.08.045 gk0r65b3 0.787344 Stork_2011, Pong_2011, Gorbalenya_1988 Xia_H_2015
3 Tuteja_2006 Unraveling the ‘DEAD-box’ helicases of Plasmodium falciparum Tuteja, Renu; Pradhan, Arun 2006 2006-07-05 PMC N PMC7127577 16713133.0 10.1016/j.gene.2006.03.007 rzev5kko 0.779592 Gorbalenya_1988, Stork_2011
4 Tuteja_2004 Prokaryotic and eukaryotic DNA helicases: Essential molecular motor proteins for cellular machinery Tuteja, Narendra; Tuteja, Renu 2004 2004-04-19 PMC N PMC7164108 15128294.0 10.1111/j.1432-1033.2004.04093.x 0i2dvdey 0.771273 Gorbalenya_1988, Stork_2011
5 Reynolds_2015 Melting of duplex DNA in the absence of ATP by NS3 helicase domain through specific interaction with a single-strand/double-strand junction Reynolds, Kimberly A.; Cameron, Craig E.; Raney, Kevin D. 2015 2015-07-02 PMC N PMC5111830 26091150.0 10.1021/acs.biochem.5b00214 kv3otavl 0.757509 Stork_2011, Pong_2011, Lee_N_2010, Gorbalenya_1988 Vasquez-Del_Carpio_2006
6 Nicolas_2016 POLD1: Central mediator of DNA replication and repair, and implication in cancer and other pathologies Nicolas, Emmanuelle; Golemis, Erica A.; Arora, Sanjeevani 2016 2016-09-15 None N PMC4969162 27320729.0 10.1016/j.gene.2016.06.031 ldblzjzn 0.665729 Tonzi_2018, Stork_2011 Sasvari_2011, Masante_2015
7 Nair_2010 Natively unfolded nucleic acid binding P8 domain of SeMV polyprotein 2a affects the novel ATPase activity of the preceding P10 domain Nair, Smita; Savithri, H.S. 2010 2010-02-05 PMC N PMC7125719 19995563.0 10.1016/j.febslet.2009.12.003 baqph4le 0.626230 Pong_2011
8 Tuteja_2006 Helicases as molecular motors: An insight Tuteja, Narendra; Tuteja, Renu 2006 2006-12-01 PMC N PMC7127012 10.1016/j.physa.2006.05.014 vcfvpxhq 0.619641 Gorbalenya_1988, Stork_2011 Xia_H_2015, Lehmann_2015
9 Yang_2013 A cypovirus VP5 displays the RNA chaperone-like activity that destabilizes RNA helices and accelerates strand annealing Yang, Jie; Cheng, Zhenyun; Zhang, Songliu; Xiong, Wei; Xia, Hongjie; Qiu, Yang; Wang, Zhaowei; Wu, Feige; Qin, Cheng-Feng; Yin, Lei; Hu, Yuanyang; Zhou, Xi 2013 2013-12-05 COMM-USE N PMC3936753 24319147.0 10.1093/nar/gkt1256 d6dqr03e 0.560505 Stork_2011, Pong_2011, Rice_1992 Xia_H_2015
10 Rajagopal_2008 Viral Helicases Rajagopal, Vaishnavi; Patel, Smita S. 2008 2008-11-01 PMC N PMC7121818 10.1007/b135974_20 q3qtgrfc 0.540686 Xia_H_2015, Gopinath_2015, Okamoto_2008
11 Zhu_B_2014 Identification of the Active Sites in the Methyltransferases of a Transcribing dsRNA Virus Zhu, Bin; Yang, Chongwen; Liu, Hongrong; Cheng, Lingpeng; Song, Feng; Zeng, Songjun; Huang, Xiaojun; Ji, Gang; Zhu, Ping 2014 2014-05-29 None N PMC7094362 24690366.0 10.1016/j.jmb.2014.03.013 um9zw5bv 0.521039 Stork_2011, Pong_2011, Gorbalenya_1988, Lin_X_2015 Gopinath_2015
12 Adedeji_2016 Biochemical Characterization of Middle East Respiratory Syndrome Coronavirus Helicase Adedeji, Adeyemi O.; Lazarus, Hilary 2016 2016-09-07 COMM-USE Y PMC5014916 27631026.0 10.1128/msphere.00235-16 mr1orklo 0.513295 Stork_2011, Pong_2011
13 Adedeji_2012 Mechanism of Nucleic Acid Unwinding by SARS-CoV Helicase Adedeji, Adeyemi O.; Marchand, Bruno; te Velthuis, Aartjan J. W.; Snijder, Eric J.; Weiss, Susan; Eoff, Robert L.; Singh, Kamalendra; Sarafianos, Stefan G. 2012 2012-05-15 COMM-USE N PMC3352918 22615777.0 10.1371/journal.pone.0036521 1ssh296a 0.465881 Stork_2011, Pong_2011 Adedeji_2016
14 Jia_Z_2019 Delicate structural coordination of the Severe Acute Respiratory Syndrome coronavirus Nsp13 upon ATP hydrolysis Jia, Zhihui; Yan, Liming; Ren, Zhilin; Wu, Lijie; Wang, Jin; Guo, Jing; Zheng, Litao; Ming, Zhenhua; Zhang, Lianqi; Lou, Zhiyong; Rao, Zihe 2019 2019-07-09 NONCOMM N PMC6614802 31131400.0 10.1093/nar/gkz409 m2tqzc4u 0.458125 Stork_2011, Gorbalenya_1988
15 Xia_H_2015 Human Enterovirus Nonstructural Protein 2C(ATPase) Functions as Both an RNA Helicase and ATP-Independent RNA Chaperone Xia, Hongjie; Wang, Peipei; Wang, Guang-Chuan; Yang, Jie; Sun, Xianlin; Wu, Wenzhe; Qiu, Yang; Shu, Ting; Zhao, Xiaolu; Yin, Lei; Qin, Cheng-Feng; Hu, Yuanyang; Zhou, Xi 2015 2015-07-28 COMM-USE N PMC4517893 26218680.0 10.1371/journal.ppat.1005067 wo462anq 0.441124 Stork_2011, Pong_2011
16 Hastie_2012 Structural Basis for the dsRNA Specificity of the Lassa Virus NP Exonuclease Hastie, Kathryn M.; King, Liam B.; Zandonatti, Michelle A.; Saphire, Erica Ollmann 2012 2012-08-28 COMM-USE N PMC3429428 22937163.0 10.1371/journal.pone.0044211 x5tlnv6i 0.440142 Stork_2011, Pong_2011
17 Shu_T_2019 Ebola virus VP35 has novel NTPase and helicase-like activities Shu, Ting; Gan, Tianyu; Bai, Peng; Wang, Xiaotong; Qian, Qi; Zhou, Hui; Cheng, Qi; Qiu, Yang; Yin, Lei; Zhong, Jin; Zhou, Xi 2019 2019-06-20 NONCOMM N PMC6582406 31066445.0 10.1093/nar/gkz340 u3pxycqh 0.423951 Stork_2011, Pong_2011 Xia_H_2015
18 Vasquez-Del_Carpio_2006 Histidine Triad-like Motif of the Rotavirus NSP2 Octamer Mediates both RTPase and NTPase Activities Vasquez-Del Carpio, Rodrigo; Gonzalez-Nilo, Fernando D.; Riadi, Gonzalo; Taraporewala, Zenobia F.; Patton, John T. 2006 2006-09-22 None N PMC1924841 16934294.0 10.1016/j.jmb.2006.07.050 3mtfvvfb 0.416082 Stork_2011, Pong_2011, Gorbalenya_1988, Hou_L_2014, Lin_X_2015
19 Kovalev_2014 The Expanding Functions of Cellular Helicases: The Tombusvirus RNA Replication Enhancer Co-opts the Plant eIF4AIII-Like AtRH2 and the DDX5-Like AtRH5 DEAD-Box RNA Helicases to Promote Viral Asymmetric RNA Replication Kovalev, Nikolay; Nagy, Peter D. 2014 2014-04-17 COMM-USE N PMC3990711 24743583.0 10.1371/journal.ppat.1004051 t21l6i3f 0.382547 Stork_2011, Rice_1992, Pong_2011 Li_Z_2009
20 Poole_2000 Methyl-RNA: an evolutionary bridge between RNA and DNA? Poole, Anthony; Penny, David; Sjöberg, Britt-Marie 2000 2000-12-31 PMC N 11137821.0 10.1016/s1074-5521(00)00042-9 pvt0amth 0.381166 Stork_2011, Payne_2017, Rice_1992, Lin_X_2015
21 Bratlie_2005 Bioinformatic mapping of AlkB homology domains in viruses Bratlie, Marit S; Drabløs, Finn 2005 2005-01-03 COMM-USE N PMC544882 15627404.0 10.1186/1471-2164-6-1 4k8f7ou1 0.361913 Rice_1992, Gorbalenya_1988
22 Graham_2008 Sequence analysis of a reovirus isolated from the winter moth Operophtera brumata (Lepidoptera: Geometridae) and its parasitoid wasp Phobocampe tempestiva (Hymenoptera: Ichneumonidae) Graham, Robert I.; Rao, Shujing; Sait, Steven M.; Attoui, Houssam; Mertens, Peter P.C.; Hails, Rosemary S.; Possee, Robert D. 2008 2008-07-31 PMC N PMC7114361 18405997.0 10.1016/j.virusres.2008.02.005 s0zrvn9o 0.361615 Wurch_1991, Firth_2009, Krause_1987, Luytjes_1988, Vennema_1991 Goldberg_1991
23 Gorbalenya_1988 A novel superfamily of nucleoside triphosphate-binding motif containing proteins which are probably involved in duplex unwinding in DNA and RNA replication and recombination Gorbalenya, Alexander E.; Koonin, Eugene V.; Donchenko, Alexei P.; Blinov, Vladimir M. 1988 1988-08-01 PMC N 2841153.0 10.1016/0014-5793(88)81226-2 c5k5rpq5 0.359439 Stork_2011, Pong_2011, Rice_1992 Xia_H_2015, Gopinath_2015
24 Kazakov_2015 Hepatitis C Virus RNA Replication Depends on Specific Cis- and Trans-Acting Activities of Viral Nonstructural Proteins Kazakov, Teymur; Yang, Feng; Ramanathan, Harish N.; Kohlway, Andrew; Diamond, Michael S.; Lindenbach, Brett D. 2015 2015-04-13 COMM-USE N PMC4395149 25875808.0 10.1371/journal.ppat.1004817 gqrsogqf 0.350964 Stork_2011, Pong_2011, Rice_1992
25 Luque_2009 Infectious Bursal Disease Virus: Ribonucleoprotein Complexes of a Double-Stranded RNA Virus Luque, Daniel; Saugar, Irene; Rejas, María Teresa; Carrascosa, José L.; Rodríguez, José F.; Castón, José R. 2009 2009-02-27 PMC N 19063900.0 10.1016/j.jmb.2008.11.029 ax8ybkcr 0.324601 Stork_2011, Rice_1992, Pong_2011
26 Deng_2013 Structural basis for the regulatory function of a complex zinc-binding domain in a replicative arterivirus helicase resembling a nonsense-mediated mRNA decay helicase Deng, Zengqin; Lehmann, Kathleen C.; Li, Xiaorong; Feng, Chong; Wang, Guoqiang; Zhang, Qi; Qi, Xiaoxuan; Yu, Lin; Zhang, Xingliang; Feng, Wenhai; Wu, Wei; Gong, Peng; Tao, Ye; Posthuma, Clara C.; Snijder, Eric J.; Gorbalenya, Alexander E.; Chen, Zhongzhou 2013 2013-12-24 NONCOMM N PMC3950703 24369429.0 10.1093/nar/gkt1310 471zei5o 0.324003 Gorbalenya_1988, Pong_2011, Stork_2011 Xia_H_2015