Topic 09 -- Abstracts with Biological Entities (English) - 75 Topics / Sub-Topic Model 19 - 15 Topics

cite ad title authors publish year publish time dataset abstract mentions covid pmcid pubmed id doi cord uid topic weight Similarity scispacy Similarity specter
1 Stewart_2018 Transcriptional and Translational Landscape of Equine Torovirus Stewart, Hazel; Brown, Katherine; Dinan, Adam M.; Irigoyen, Nerea; Snijder, Eric J.; Firth, Andrew E. 2018 2018-08-16 COMM-USE N PMC6096809 29950409.0 10.1128/jvi.00589-18 jlnv90vn 0.994186 Rice_1992, Lamb_1991, Auewarakul_2005, Payne_2017 Stewart_2018
2 Stewart_2018 The transcriptional and translational landscape of equine torovirus Hazel Stewart; Katherine Brown; Adam M. Dinan; Nerea Irigoyen; Eric J. Snijder; Andrew E. Firth 2018 2018-04-07 BioRxiv N 10.1101/296996 mozfm5ds 0.984472 Rice_1992, Lamb_1991, Auewarakul_2005 Stewart_2018
3 Cho_K_2014 Toroviruses (Coronaviridae) Cho, K.-O.; Hoet, A.E. 2014 2014-12-31 PMC N PMC7157456 10.1016/b978-0-12-801238-3.02674-x wuzucvvb 0.982687 Ryu_W_2017, Hewson_2007 Stewart_2018, Stewart_2018
4 Hoet_2008 Torovirus Hoet, A.E.; Horzinek, M.C. 2008 2008-12-31 PMC N PMC7148633 10.1016/b978-012374410-4.00516-1 moljceje 0.916348 Ryu_W_2017 Stewart_2018, Draker_2006, Stewart_2018
5 Dinan_2019 Comparative analysis of gene expression in virulent and attenuated strains of infectious bronchitis virus at sub-codon resolution Adam M. Dinan; Sarah Keep; Erica Bickerton; Paul Britton; Andrew E. Firth; Ian Brierley 2019 2019-04-18 BioRxiv N 10.1101/612614 yv9or7cu 0.742461 Rice_1992, Lamb_1991, Auewarakul_2005 Dinan_2019
6 Walker_2008 Yellow Head Virus Walker, P.J.; Sittidilokratna, N. 2008 2008-12-31 PMC N 10.1016/b978-012374410-4.00779-2 hs37lb9t 0.739265 Ryu_W_2017, Rice_1992, Lamb_1991
7 Ryu_W_2017 Chapter 13 Other Positive-Strand RNA Viruses Ryu, Wang-Shick 2017 2017-12-31 PMC N PMC7149767 10.1016/b978-0-12-800838-6.00013-8 8m3vrjyr 0.668536 Ryu_W_2017 Bhullar_2014
8 Dinan_2019 Comparative Analysis of Gene Expression in Virulent and Attenuated Strains of Infectious Bronchitis Virus at Subcodon Resolution Dinan, Adam M.; Keep, Sarah; Bickerton, Erica; Britton, Paul; Firth, Andrew E.; Brierley, Ian 2019 2019-08-28 None N PMC6714804 31243124.0 10.1128/jvi.00714-19 xsuq2np8 0.665021 Rice_1992, Lamb_1991, Auewarakul_2005 Tzeng_2006, Dinan_2019
9 Mousavizadeh_2020 Genotype and phenotype of COVID-19: Their roles in pathogenesis Mousavizadeh, Leila; Ghasemi, Sorayya 2020 2020-03-31 PMC Y 10.1016/j.jmii.2020.03.022 p3gswh23 0.664948 Rice_1992, Ryu_W_2017, Payne_2017, Auewarakul_2005
10 Irigoyen_2016 High-Resolution Analysis of Coronavirus Gene Expression by RNA Sequencing and Ribosome Profiling Irigoyen, Nerea; Firth, Andrew E.; Jones, Joshua D.; Chung, Betty Y.-W.; Siddell, Stuart G.; Brierley, Ian 2016 2016-02-26 COMM-USE N PMC4769073 26919232.0 10.1371/journal.ppat.1005473 c1lykari 0.643280 Rice_1992, Ryu_W_2017, Lamb_1991
11 FENNER_1987 CHAPTER 28 Coronaviridae FENNER, FRANK; BACHMANN, PETER A.; GIBBS, E. PAUL J.; MURPHY, FREDERICK A.; STUDDERT, MICHAEL J.; WHITE, DAVID O. 1987 1987-12-31 PMC N PMC7149976 10.1016/b978-0-12-253055-5.50032-3 smmrl5i6 0.629292 Ryu_W_2017, Rice_1992, Auewarakul_2005
12 Payne_2017 Chapter 17 Family Coronaviridae Payne, Susan 2017 2017-12-31 PMC N PMC7149805 10.1016/b978-0-12-803109-4.00017-9 b8gi4m3k 0.618095 Ryu_W_2017, Modrow_2013, Payne_2017 Gorbalenya_2006, Enjuanes_2008
13 Cowley_2016 Chapter 32 Nidoviruses of Fish and Crustaceans Cowley, J.A. 2016 2016-12-31 PMC N PMC7150020 10.1016/b978-0-12-801573-5.00032-2 ag5y781z 0.601826 Ryu_W_2017, Rice_1992 Gorbalenya_2006, Wijegoonawardane_2008, Enjuanes_2008
14 Cavanagh_2008 Coronaviruses: General Features Cavanagh, D.; Britton, P. 2008 2008-12-31 PMC N PMC7149783 10.1016/b978-012374410-4.00370-8 sneqefec 0.597708 Rice_1992, Ryu_W_2017, Auewarakul_2005, Payne_2017 Enjuanes_2008
15 Sittidilokratna_2008 RNA transcription analysis and completion of the genome sequence of yellow head nidovirus Sittidilokratna, Nusra; Dangtip, Sirintip; Cowley, Jeff A.; Walker, Peter J. 2008 2008-09-30 PMC N PMC7114370 18582978.0 10.1016/j.virusres.2008.05.008 bfpnzwyl 0.597708 Luytjes_1988, Lamb_1991, Firth_2009, Morikawa_1992 Goldberg_1991
16 Snijder_2003 Unique and Conserved Features of Genome and Proteome of SARS-coronavirus, an Early Split-off From the Coronavirus Group 2 Lineage Snijder, Eric J.; Bredenbeek, Peter J.; Dobbe, Jessika C.; Thiel, Volker; Ziebuhr, John; Poon, Leo L.M.; Guan, Yi; Rozanov, Mikhail; Spaan, Willy J.M.; Gorbalenya, Alexander E. 2003 2003-08-29 PMC N PMC7159028 12927536.0 10.1016/s0022-2836(03)00865-9 kstt07y1 0.581817 Rice_1992, Payne_2017, Lamb_1991, Auewarakul_2005
17 Gibbs_2004 The phylogeny of SARS coronavirus Gibbs, A. J.; Gibbs, M. J.; Armstrong, J. S. 2004 2004-01-05 PMC N PMC7086792 14991447.0 10.1007/s00705-003-0244-0 wr7vrild 0.482440 Rice_1992
18 Brian_2005 Coronavirus Genome Structure and Replication Brian, D. A.; Baric, R. S. 2005 2005-01-01 PMC N PMC7120446 15609507.0 10.1007/3-540-26765-4_1 pl3tmky8 0.480228 Ryu_W_2017, Rice_1992, Payne_2017
19 Tsai_2018 Gene Variations in Cis-Acting Elements between the Taiwan and Prototype Strains of Porcine Epidemic Diarrhea Virus Alter Viral Gene Expression Tsai, Tsung-Lin; Su, Chen-Chang; Hsieh, Ching-Chi; Lin, Chao-Nan; Chang, Hui-Wen; Lo, Chen-Yu; Lin, Ching-Houng; Wu, Hung-Yi 2018 2018-11-29 COMM-USE N PMC6316102 30501108.0 10.3390/genes9120591 xge6mah1 0.476326 Auewarakul_2005, Morikawa_1992, Luytjes_1988, Firth_2009 Gao_F_2012
20 Draker_2006 The complete sequence of the bovine torovirus genome Draker, Ryan; Roper, Rachel L.; Petric, Martin; Tellier, Raymond 2006 2006-01-31 PMC N PMC7114287 16137782.0 10.1016/j.virusres.2005.07.005 bvvjdnp7 0.476307 Gorbalenya_1988, Luytjes_1988, Firth_2009, Morikawa_1992, Lee_H_1991
21 Wijegoonawardane_2008 Genetic diversity in the yellow head nidovirus complex Wijegoonawardane, Priyanjalie K.M.; Cowley, Jeff A.; Phan, Thuy; Hodgson, Richard A.J.; Nielsen, Linda; Kiatpathomchai, Wansika; Walker, Peter J. 2008 2008-10-25 PMC N PMC7103379 18768192.0 10.1016/j.virol.2008.07.005 g64fmvxs 0.452227 Firth_2009, Luytjes_1988, Morikawa_1992, Lamb_1991, Hatfield_1990 Goldberg_1991
22 UNKNOWN_2012 Family Coronaviridae None 2012 2012-12-31 None N PMC7149967 10.1016/b978-0-12-384684-6.00068-9 yilv9z2m 0.448274 Ryu_W_2017, Modrow_2013, Payne_2017, Gorbalenya_1988
23 Pyrc_2004 Genome structure and transcriptional regulation of human coronavirus NL63 Pyrc, Krzysztof; Jebbink, Maarten F; Berkhout, Ben; van der Hoek, Lia 2004 2004-11-17 COMM-USE N PMC538260 15548333.0 10.1186/1743-422x-1-7 qg0fsliy 0.439832 Auewarakul_2005, Rice_1992, Payne_2017, Banerjee_2001 Toshio_1989, Salim_2008
24 Sevajol_2014 Insights into RNA synthesis, capping, and proofreading mechanisms of SARS-coronavirus Sevajol, Marion; Subissi, Lorenzo; Decroly, Etienne; Canard, Bruno; Imbert, Isabelle 2014 2014-12-19 PMC N PMC7114481 25451065.0 10.1016/j.virusres.2014.10.008 i2f5ksux 0.422048 Stork_2011, Rice_1992, Ryu_W_2017 Chen_2016
25 Lulla_2019 A hidden gene in astroviruses encodes a cell-permeabilizing protein involved in virus release Valeria Lulla; Andrew E. Firth 2019 2019-06-06 BioRxiv N 10.1101/661579 avq3zwmc 0.417397 Rice_1992, Ryu_W_2017 Tzeng_2006
26 Fang_2016 Identification and subcellular localization of porcine deltacoronavirus accessory protein NS6 Fang, Puxian; Fang, Liurong; Liu, Xiaorong; Hong, Yingying; Wang, Yongle; Dong, Nan; Ma, Panpan; Bi, Jing; Wang, Dang; Xiao, Shaobo 2016 2016-12-31 PMC N PMC7111631 27661736.0 10.1016/j.virol.2016.09.015 6sjhbrb1 0.416046 Pong_2011, Stork_2011
27 Hsin_2018 Nucleocapsid protein-dependent assembly of the RNA packaging signal of Middle East respiratory syndrome coronavirus Hsin, Wei-Chen; Chang, Chan-Hua; Chang, Chi-You; Peng, Wei-Hao; Chien, Chung-Liang; Chang, Ming-Fu; Chang, Shin C. 2018 2018-05-24 COMM-USE N PMC5966903 29793506.0 10.1186/s12929-018-0449-x lcu1mgno 0.368467 Rice_1992, Pong_2011, Stork_2011 Bhullar_2014
28 Wu_H_2003 Common RNA replication signals exist among group 2 coronaviruses: evidence for in vivo recombination between animal and human coronavius molecules Wu, Hung-Yi; Guy, James S; Yoo, Dongwan; Vlasak, Reinhard; Urbach, Ena; Brian, David A 2003 2003-10-10 PMC N PMC7126556 14592769.0 10.1016/s0042-6822(03)00511-7 2l4xxu3v 0.364446 Ryu_W_2017, Rice_1992 Kazakov_2015
29 Mondal_2004 Comparison of four regions in the replicase gene of heterologous infectious bronchitis virus strains Mondal, Shankar P; Cardona, Carol J 2004 2004-06-20 PMC N PMC7125564 15183070.0 10.1016/j.virol.2004.03.032 78m8ylz5 0.361172 Rice_1992, Luytjes_1988, Gorbalenya_1988, Zhou_2011 Tzeng_2006
30 Lee_C_2011 The solution structure of coronaviral stem-loop 2 (SL2) reveals a canonical CUYG tetraloop fold Lee, Chul Won; Li, Lichun; Giedroc, David P. 2011 2011-04-06 PMC N PMC3086565 21382373.0 10.1016/j.febslet.2011.03.002 ehwdg722 0.360514 Pong_2011, Morikawa_1992, Gorbalenya_1988, Lin_X_2015 Li_L_2008
31 Firth_2009 A case for a CUG-initiated coding sequence overlapping torovirus ORF1a and encoding a novel 30 kDa product Firth, Andrew E; Atkins, John F 2009 2009-09-08 COMM-USE N PMC2749830 19737402.0 10.1186/1743-422x-6-136 giea69b5 0.354396 Lamb_1991, Morikawa_1992, Luytjes_1988, Hatfield_1990
32 Adedeji_2016 Biochemical Characterization of Middle East Respiratory Syndrome Coronavirus Helicase Adedeji, Adeyemi O.; Lazarus, Hilary 2016 2016-09-07 COMM-USE Y PMC5014916 27631026.0 10.1128/msphere.00235-16 mr1orklo 0.351730 Stork_2011, Pong_2011
33 Xu_J_2016 Genome Organization of the SARS-CoV Xu, Jing; Hu, Jianfei; Wang, Jing; Han, Yujun; Hu, Yongwu; Wen, Jie; Li, Yan; Ji, Jia; Ye, Jia; Zhang, Zizhang; Wei, Wei; Li, Songgang; Wang, Jun; Wang, Jian; Yu, Jun; Yang, Huanming 2016 2016-11-28 None N PMC5172239 15629035.0 10.1016/s1672-0229(03)01028-3 i738t9lf 0.346543 Morikawa_1992, Lamb_1991, Luytjes_1988, Firth_2009
34 Snijder_1991 Comparison of the genome organization of toro- and coronaviruses: Evidence for two nonhomologous RNA recombination events during berne virus evolution Snijder, Eric J.; Den Boon, Johan A.; Horzinek, Marian C.; Spaan, Willy J.M. 1991 1991-01-31 PMC N PMC7126633 1984666.0 10.1016/0042-6822(91)90056-h x1dv7ag8 0.339277 Luytjes_1988, Firth_2009, Rice_1992, Gorbalenya_1988, Lamb_1991
35 Firth_2010 Evidence for ribosomal frameshifting and a novel overlapping gene in the genomes of insect-specific flaviviruses Firth, Andrew E.; Blitvich, Bradley J.; Wills, Norma M.; Miller, Cathy L.; Atkins, John F. 2010 2010-03-30 None N PMC2830293 20097399.0 10.1016/j.virol.2009.12.033 x1nmbr4g 0.339277 Rice_1992, Lamb_1991, Morikawa_1992, Stork_2011, Ryu_W_2017 Firth_2009, Nowak_1984
36 Yang_2009 Translational control of the subgenomic RNAs of severe acute respiratory syndrome coronavirus Yang, Yaling; Hussain, Snawar; Wang, Hao; Ke, Min; Guo, Deyin 2009 2009-04-12 PMC N PMC7089290 19363699.0 10.1007/s11262-009-0357-y pz7mi86u 0.335900 Lamb_1991, Morikawa_1992, Firth_2009, Hatfield_1990
37 Madhugiri_2014 RNA structure analysis of alphacoronavirus terminal genome regions Madhugiri, Ramakanth; Fricke, Markus; Marz, Manja; Ziebuhr, John 2014 2014-12-19 PMC N PMC7114417 25307890.0 10.1016/j.virusres.2014.10.001 7de21oaq 0.333036 Rice_1992, Payne_2017, Stork_2011 Adams_2003
38 Taiaroa_2020 Direct RNA sequencing and early evolution of SARS-CoV-2 George Taiaroa; Daniel Rawlinson; Leo Featherstone; Miranda Pitt; Leon Caly; Julian Druce; Damian Purcell; Leigh Harty; Thomas Tran; Jason Roberts; Mike Catton; Deborah Williamson; Lachlan Coin; Sebastian Duchene 2020 2020-03-07 BioRxiv Y 10.1101/2020.03.05.976167 x3hr1y6o 0.332287
39 Plagemann_1991 Hepatitis C virus Plagemann, P. G. W. 1991 1991-01-01 PMC N PMC7087296 1659796.0 10.1007/bf01310473 h9ppa064 0.326554 Rice_1992, Auewarakul_2005, Luytjes_1988, Morikawa_1992 Tzeng_2006
40 Nakagawa_2016 Chapter Five Viral and Cellular mRNA Translation in Coronavirus-Infected Cells Nakagawa, K.; Lokugamage, K.G.; Makino, S. 2016 2016-12-31 None N PMC5388242 27712623.0 10.1016/bs.aivir.2016.08.001 ncufofro 0.321467 Lamb_1991, Rice_1992, Stork_2011 Tzeng_2006, Galán_2009, Bhullar_2014
41 Chen_2010 Group-specific structural features of the 5′-proximal sequences of coronavirus genomic RNAs Chen, Shih-Cheng; Olsthoorn, René C.L. 2010 2010-05-25 PMC N PMC7111916 20202661.0 10.1016/j.virol.2010.02.007 obes9kjl 0.312841 Gorbalenya_1988, Morikawa_1992, Luytjes_1988, Firth_2009, Hyde_2015
42 Zeng_2020 Leveraging mRNAs sequences to express SARS-CoV-2 antigens in vivo Chunxi Zeng; Xucheng Hou; Jingyue Yan; Chengxiang Zhang; Wenqing Li; Weiyu Zhao; Shi Du; Yizhou Dong 2020 2020-04-05 BioRxiv Y 10.1101/2020.04.01.019877 aju2nr9x 0.311321 Lamb_1991
43 Zhang_2007 Genomic characterization of equine coronavirus Zhang, Jianqiang; Guy, James S.; Snijder, Eric J.; Denniston, Doug A.; Timoney, Peter J.; Balasuriya, Udeni B.R. 2007 2007-12-05 PMC N PMC7103287 17706262.0 10.1016/j.virol.2007.06.035 rqfxe0x1 0.310104 Rice_1992, Ryu_W_2017, Lamb_1991
44 Payne_2017 Chapter 18 Family Arteriviridae Payne, Susan 2017 2017-12-31 PMC N PMC7149662 10.1016/b978-0-12-803109-4.00018-0 ww70klka 0.308592 Ryu_W_2017, Rice_1992 Brinton_2008
45 Wu_C_2014 Nucleocapsid Phosphorylation and RNA Helicase DDX1 Recruitment Enables Coronavirus Transition from Discontinuous to Continuous Transcription Wu, Chia-Hsin; Chen, Pei-Jer; Yeh, Shiou-Hwei 2014 2014-10-08 None N PMC7104987 25299332.0 10.1016/j.chom.2014.09.009 9b64z84d 0.304512 Stork_2011, Pong_2011 Sasvari_2011, Bhullar_2014