Topic 11 -- Abstracts with Biological Entities (English) - 75 Topics / Sub-Topic Model 19 - 15 Topics

cite ad title authors publish year publish time dataset abstract mentions covid pmcid pubmed id doi cord uid topic weight Similarity scispacy Similarity specter
1 Saberi_2018 A planarian nidovirus expands the limits of RNA genome size Amir Saberi; Anastasia A. Gulyaeva; John L. Brubacher; Phillip A. Newmark; Alexander E. Gorbalenya 2018 2018-04-11 BioRxiv N 10.1101/299776 gwgflckq 0.901096 Rice_1992, Payne_2017, Auewarakul_2005 Saberi_2018, Enjuanes_2008
2 Saberi_2018 A planarian nidovirus expands the limits of RNA genome size Saberi, Amir; Gulyaeva, Anastasia A.; Brubacher, John L.; Newmark, Phillip A.; Gorbalenya, Alexander E. 2018 2018-11-01 None N PMC6211748 30383829.0 10.1371/journal.ppat.1007314 pxf8piqm 0.894198 Rice_1992, Lamb_1991, Payne_2017, Auewarakul_2005 Saberi_2018, Enjuanes_2008
3 Ryu_W_2017 Chapter 16 Other Negative-Strand RNA Viruses Ryu, Wang-Shick 2017 2017-12-31 PMC N PMC7150163 10.1016/b978-0-12-800838-6.00016-3 59emvigh 0.869092
4 Dinan_2020 A case for a negative-strand coding sequence in a group of positive-sense RNA viruses Dinan, Adam M; Lukhovitskaya, Nina I; Olendraite, Ingrida; Firth, Andrew E 2020 2020-02-10 COMM-USE N PMC7010960 32064120.0 10.1093/ve/veaa007 x0t9fu4d 0.825655 Lamb_1991, Auewarakul_2005, Rice_1992, Firth_2009, Payne_2017 Dinan_2019, Bhullar_2014
5 Nga_P_2011 Discovery of the First Insect Nidovirus, a Missing Evolutionary Link in the Emergence of the Largest RNA Virus Genomes Nga, Phan Thi; Parquet, Maria del Carmen; Lauber, Chris; Parida, Manmohan; Nabeshima, Takeshi; Yu, Fuxun; Thuy, Nguyen Thanh; Inoue, Shingo; Ito, Takashi; Okamoto, Kenta; Ichinose, Akitoyo; Snijder, Eric J.; Morita, Kouichi; Gorbalenya, Alexander E. 2011 2011-09-08 COMM-USE N PMC3169540 21931546.0 10.1371/journal.ppat.1002215 ah9cnwzw 0.792656 Ryu_W_2017, Lamb_1991, Rice_1992, Payne_2017, Firth_2009 Gorbalenya_2006, Enjuanes_2008
6 Dinan_2019 A case for a reverse-frame coding sequence in a group of positive-sense RNA viruses Adam M. Dinan; Nina I. Lukhovitskaya; Ingrida Olendraite; Andrew E. Firth 2019 2019-06-10 BioRxiv N 10.1101/664342 t16n853r 0.761675 Lamb_1991, Auewarakul_2005, Rice_1992, Firth_2009, Payne_2017 Dinan_2020, Bhullar_2014, Firth_2009
7 Ferron_2019 Identification of a Nidovirales Orf1a N7-guanine cap Methyltransferase signature-sequence as a genetic marker of large genome Tobaniviridae François Ferron; Humberto Julio Debat; Etienne Decroly; Bruno Canard 2019 2019-05-17 BioRxiv N 10.1101/639369 lnf2mj29 0.691730 Gorbalenya_1988, Stork_2011, Pong_2011, Payne_2017
8 Zirkel_2011 An Insect Nidovirus Emerging from a Primary Tropical Rainforest Zirkel, Florian; Kurth, Andreas; Quan, Phenix-Lan; Briese, Thomas; Ellerbrok, Heinz; Pauli, Georg; Leendertz, Fabian H.; Lipkin, W. Ian; Ziebuhr, John; Drosten, Christian; Junglen, Sandra 2011 2011-06-14 NONCOMM N PMC3111606 21673192.0 10.1128/mbio.00077-11 ulwo6i38 0.688880 Li_D_2019, Auewarakul_2005, Ryu_W_2017, Firth_2009
9 UNKNOWN_2012 Order Nidovirales None 2012 2012-12-31 PMC N PMC7150239 10.1016/b978-0-12-384684-6.00066-5 js9ek5me 0.658350 Auewarakul_2005, Li_D_2019, Payne_2017 Gorbalenya_2006, Enjuanes_2008
10 Payne_2017 Chapter 18 Family Arteriviridae Payne, Susan 2017 2017-12-31 PMC N PMC7149662 10.1016/b978-0-12-803109-4.00018-0 ww70klka 0.651894 Ryu_W_2017, Rice_1992 Brinton_2008
11 de_Vries_1997 The Genome Organization of the Nidovirales: Similarities and Differences between Arteri-, Toro-, and Coronaviruses de Vries, Antoine A.F.; Horzinek, Marian C.; Rottier, Peter J.M.; de Groot, Raoul J. 1997 1997-02-28 PMC N 10.1006/smvy.1997.0104 4kgy20o9 0.644244 Ryu_W_2017, Rice_1992 Gorbalenya_2006
12 Lauber_2013 The Footprint of Genome Architecture in the Largest Genome Expansion in RNA Viruses Lauber, Chris; Goeman, Jelle J.; Parquet, Maria del Carmen; Thi Nga, Phan; Snijder, Eric J.; Morita, Kouichi; Gorbalenya, Alexander E. 2013 2013-07-18 COMM-USE N PMC3715407 23874204.0 10.1371/journal.ppat.1003500 3g3apbon 0.627445 Auewarakul_2005, Lamb_1991, Firth_2009, Rice_1992, Morikawa_1992
13 Brinton_2008 Arteriviruses Brinton, M.A.; Snijder, E.J. 2008 2008-12-31 PMC N PMC7149349 10.1016/b978-012374410-4.00537-9 4spjox0r 0.620699 Ryu_W_2017, Rice_1992
14 Sawicki_2008 Coronavirus Genome Replication Sawicki, Stanley G. 2008 2008-11-01 PMC N PMC7122471 10.1007/b135974_2 3tfwy8km 0.593021 Ryu_W_2017 Gorbalenya_2006, Enjuanes_2008
15 Plagemann_1992 Lactate Dehydrogenase-Elevating Virus, Equine Arteritis Virus, and Simian Hemorrhagic Fever Virus: A New Group of Positive-Strand RNA Viruses Plagemann, Peter G.W.; Moennig, Volker 1992 1992-12-31 PMC N 1315480.0 10.1016/s0065-3527(08)60036-6 t6f3jiri 0.592221 Ryu_W_2017, Rice_1992
16 Lehmann_2015 Arterivirus nsp12 versus the coronavirus nsp16 2′-O-methyltransferase: comparison of the C-terminal cleavage products of two nidovirus pp1ab polyproteins Lehmann, Kathleen C.; Hooghiemstra, Lisa; Gulyaeva, Anastasia; Samborskiy, Dmitry V.; Zevenhoven-Dobbe, Jessika C.; Snijder, Eric J.; Gorbalenya, Alexander E.; Posthuma, Clara C. 2015 2015-09-01 COMM-USE N PMC7081073 26041874.0 10.1099/vir.0.000209 qcezqpze 0.588930 Gorbalenya_1988, Pong_2011, Stork_2011
17 Walker_2015 Evolution of Genome Size and Complexity in the Rhabdoviridae Walker, Peter J.; Firth, Cadhla; Widen, Steven G.; Blasdell, Kim R.; Guzman, Hilda; Wood, Thomas G.; Paradkar, Prasad N.; Holmes, Edward C.; Tesh, Robert B.; Vasilakis, Nikos 2015 2015-02-13 COMM-USE N PMC4334499 25679389.0 10.1371/journal.ppat.1004664 5d64esp4 0.576873 Auewarakul_2005, Li_D_2019, Rice_1992, Lamb_1991 Goldberg_1991
18 Firth_2011 Discovery of a small arterivirus gene that overlaps the GP5 coding sequence and is important for virus production Firth, Andrew E.; Zevenhoven-Dobbe, Jessika C.; Wills, Norma M.; Go, Yun Young; Balasuriya, Udeni B. R.; Atkins, John F.; Snijder, Eric J.; Posthuma, Clara C. 2011 2011-05-23 COMM-USE N PMC3139419 21307223.0 10.1099/vir.0.029264-0 vjre36nt 0.575345 Lamb_1991, Rice_1992, Morikawa_1992, Luytjes_1988, Firth_2009 Firth_2009, Goldberg_1991
19 Flores_2000 Avsunviroidae family: Viroids containing hammerhead ribozymes Flores, Ricardo; Daròs, Jose-Antonio; Hernández, Carmen 2000 2000-12-31 PMC N 11050945.0 10.1016/s0065-3527(00)55006-4 crmggkkx 0.560648 Stork_2011, Liu_Y_2009, Staple_2005, Modrow_2013
20 Gorbalenya_2006 Nidovirales: Evolving the largest RNA virus genome Gorbalenya, Alexander E.; Enjuanes, Luis; Ziebuhr, John; Snijder, Eric J. 2006 2006-04-30 PMC N PMC7114179 16503362.0 10.1016/j.virusres.2006.01.017 r68l7g2e 0.558274 Rice_1992, Payne_2017, Lamb_1991, Stork_2011 Enjuanes_2008, Posthuma_2017
21 Chen_1995 Detection of related positive-strand RNA virus genomes by reverse transcription/polymerase chain reaction using degenerate primers for common replicase sequences Chen, Zongyu; Plagemann, Peter G.W. 1995 1995-12-31 PMC N PMC7134001 8837898.0 10.1016/0168-1702(95)00093-3 4t8ra5oa 0.537162 Rice_1992 Nowak_1984
22 Hewson_2007 Molecular Epidemiology, Genomics, and Phylogeny of Crimean-Congo Hemorrhagic Fever Virus Hewson, Roger 2007 2007-01-01 PMC N PMC7121233 10.1007/978-1-4020-6106-6_5 y3d9ghel 0.521268 Ryu_W_2017
23 Li_Y_2019 Programmed −2/−1 Ribosomal Frameshifting in Simarteriviruses: an Evolutionarily Conserved Mechanism Li, Yanhua; Firth, Andrew E.; Brierley, Ian; Cai, Yingyun; Napthine, Sawsan; Wang, Tao; Yan, Xingyu; Kuhn, Jens H.; Fang, Ying 2019 2019-07-30 COMM-USE N PMC6675879 31167906.0 10.1128/jvi.00370-19 or5nbobd 0.501553 Rice_1992, Ryu_W_2017
24 Meulenberg_1997 Molecular characterization of Lelystad virus Meulenberg, J.J.M.; Petersen den Besten, A.; de Kluyver, E.; van Nieuwstadt, A.; Wensvoort, G.; Moormann, R.J.M. 1997 1997-04-30 PMC N PMC7117323 9220614.0 10.1016/s0378-1135(96)01335-1 jcb9w8y9 0.477752 Luytjes_1988, Tohya_1991, Lamb_1991, Ryu_W_2017 Meulenberg_1995
25 González_2003 A comparative sequence analysis to revise the current taxonomy of the family Coronaviridae González, J. M.; Gomez-Puertas, P.; Cavanagh, D.; Gorbalenya, A. E.; Enjuanes, Luis 2003 2003-01-01 PMC N PMC7087110 14579179.0 10.1007/s00705-003-0162-1 3ain627u 0.469343 Auewarakul_2005, Gorbalenya_1988
26 Agranovsky_1996 Principles of Molecular Organization, Expression, and Evolution of Closteroviruses: Over The Barriers Agranovsky, A.A. 1996 1996-12-31 PMC N 8895832.0 10.1016/s0065-3527(08)60735-6 0kcujnfa 0.463742 Rice_1992, Ryu_W_2017, Payne_2017 Gorbalenya_2006
27 Guo_Z_2018 Identification and genomic characterization of a novel CRESS DNA virus from a calf with severe hemorrhagic enteritis in China Guo, Zijing; He, Qifu; Tang, Cheng; Zhang, Bin; Yue, Hua 2018 2018-08-15 PMC N PMC7114660 30040978.0 10.1016/j.virusres.2018.07.015 yr0uxok2 0.452719 Ryu_W_2017
28 Agol_1991 The 5′-Untranslated Region of Picornaviral Genomes Agol, Vadim I. 1991 1991-12-31 PMC N PMC7130636 1957717.0 10.1016/s0065-3527(08)60278-x 8xbl2qtp 0.426145 Ryu_W_2017, Rice_1992, Payne_2017, Auewarakul_2005
29 Lehmann_2015 Discovery of an essential nucleotidylating activity associated with a newly delineated conserved domain in the RNA polymerase-containing protein of all nidoviruses Lehmann, Kathleen C.; Gulyaeva, Anastasia; Zevenhoven-Dobbe, Jessika C.; Janssen, George M. C.; Ruben, Mark; Overkleeft, Hermen S.; van Veelen, Peter A.; Samborskiy, Dmitry V.; Kravchenko, Alexander A.; Leontovich, Andrey M.; Sidorov, Igor A.; Snijder, Eric J.; Posthuma, Clara C.; Gorbalenya, Alexander E. 2015 2015-09-30 NONCOMM N PMC4787807 26304538.0 10.1093/nar/gkv838 pda9knvv 0.420477 Stork_2011, Pong_2011, Rice_1992 Xia_H_2015
30 Gorbalenya_1989 An NTP-binding motif is the most conserved sequence in a highly diverged monophyletic group of proteins involved in positive strand RNA viral replication Gorbalenya, Alexander E.; Blinov, Vladimir M.; Donchenko, Alexei P.; Koonin, Eugene V. 1989 1989-01-01 PMC N PMC7087505 2522556.0 10.1007/bf02102483 vqjhiv7p 0.405091 Gorbalenya_1988, Auewarakul_2005, Li_D_2019
31 Rappe_2018 Antiviral activity of K22 against members of the order Nidovirales Rappe, Julie Christiane Françoise; de Wilde, Adriaan; Di, Han; Müller, Christin; Stalder, Hanspeter; V’kovski, Philip; Snijder, Eric; Brinton, Margo A.; Ziebuhr, John; Ruggli, Nicolas; Thiel, Volker 2018 2018-02-15 PMC N PMC7114538 29337162.0 10.1016/j.virusres.2018.01.002 yxc31cbj 0.383476 Ryu_W_2017
32 Wolf_2018 Origins and Evolution of the Global RNA Virome Wolf, Yuri I.; Kazlauskas, Darius; Iranzo, Jaime; Lucía-Sanz, Adriana; Kuhn, Jens H.; Krupovic, Mart; Dolja, Valerian V.; Koonin, Eugene V. 2018 2018-11-27 PMC N PMC6282212 30482837.0 10.1128/mbio.02329-18 p1b07b4t 0.363318 Rice_1992, Payne_2017, Ryu_W_2017
33 Deng_2013 Structural basis for the regulatory function of a complex zinc-binding domain in a replicative arterivirus helicase resembling a nonsense-mediated mRNA decay helicase Deng, Zengqin; Lehmann, Kathleen C.; Li, Xiaorong; Feng, Chong; Wang, Guoqiang; Zhang, Qi; Qi, Xiaoxuan; Yu, Lin; Zhang, Xingliang; Feng, Wenhai; Wu, Wei; Gong, Peng; Tao, Ye; Posthuma, Clara C.; Snijder, Eric J.; Gorbalenya, Alexander E.; Chen, Zhongzhou 2013 2013-12-24 NONCOMM N PMC3950703 24369429.0 10.1093/nar/gkt1310 471zei5o 0.350390 Gorbalenya_1988, Pong_2011, Stork_2011 Xia_H_2015
34 Cheung_2013 A divergent clade of circular single-stranded DNA viruses from pig feces Cheung, Andrew K.; Ng, Terry F.; Lager, Kelly M.; Bayles, Darrell O.; Alt, David P.; Delwart, Eric L.; Pogranichniy, Roman M.; Kehrli, Marcus E. 2013 2013-04-24 PMC N PMC4175981 23612924.0 10.1007/s00705-013-1701-z tu6g977q 0.325023 Rice_1992, Payne_2017, Ryu_W_2017, Auewarakul_2005