Topic 07 -- Abstracts with Biological Entities (English) - 75 Topics / Sub-Topic Model 19 - 15 Topics

cite ad title authors publish year publish time dataset abstract mentions covid pmcid pubmed id doi cord uid topic weight Similarity scispacy Similarity specter
1 Crescenzo-Chaigne_2013 The Panhandle Formed by Influenza A and C Virus NS Non-Coding Regions Determines NS Segment Expression Crescenzo-Chaigne, Bernadette; Barbezange, Cyril; van der Werf, Sylvie 2013 2013-11-21 COMM-USE N PMC3858493 24348921.0 10.1371/journal.pone.0081550 puj74k7y 0.938431 Rice_1992, Morikawa_1992 Crescenzo-Chaigne_2014
2 Sun_Z_2010 Identification of dispensable nucleotide sequence in 3′ untranslated region of porcine reproductive and respiratory syndrome virus Sun, Zhi; Liu, Changlong; Tan, Feifei; Gao, Fei; Liu, Ping; Qin, Aijian; Yuan, Shishan 2010 2010-12-31 PMC N PMC7114379 20833212.0 10.1016/j.virusres.2010.08.027 wifkhnkz 0.871878 Rice_1992, Morikawa_1992 Gao_F_2012
3 Gao_F_2013 Replacement of the heterologous 5′ untranslated region allows preservation of the fully functional activities of type 2 porcine reproductive and respiratory syndrome virus Gao, Fei; Yao, Huochun; Lu, Jiaqi; Wei, Zuzhang; Zheng, Haihong; Zhuang, Jinshan; Tong, Guangzhi; Yuan, Shishan 2013 2013-04-25 PMC N PMC7111940 23453581.0 10.1016/j.virol.2012.12.013 s63clavw 0.849045 Rice_1992, Auewarakul_2005 Gao_F_2012, Tzeng_2006
4 Widjaja_2012 Competition between Influenza A Virus Genome Segments Widjaja, Ivy; de Vries, Erik; Rottier, Peter J. M.; de Haan, Cornelis A. M. 2012 2012-10-11 COMM-USE N PMC3469491 23071819.0 10.1371/journal.pone.0047529 pzbhq26m 0.822460 Gendron_2010, Rice_1992, Vennema_1991 Tzeng_2006, Masante_2015
5 Hao_S_2017 Alternative Polyadenylation of Human Bocavirus at Its 3′ End Is Regulated by Multiple Elements and Affects Capsid Expression Hao, Sujuan; Zhang, Junmei; Chen, Zhen; Xu, Huanzhou; Wang, Hanzhong; Guan, Wuxiang 2017 2017-01-18 COMM-USE N PMC5244319 27881651.0 10.1128/jvi.02026-16 nulqcpz5 0.821902 Morikawa_1992, Lamb_1991, Chen_2013, Vennema_1991, Krause_1987 Gutiérrez-Escolano_2003
6 Hanley_2010 Roles of the respiratory syncytial virus trailer region: Effects of mutations on genome production and stress granule formation Hanley, Laura L.; McGivern, David R.; Teng, Michael N.; Djang, Robin; Collins, Peter L.; Fearns, Rachel 2010 2010-10-01 PMC N PMC2971657 20701943.0 10.1016/j.virol.2010.07.006 gppyv588 0.798163 Rice_1992, Stork_2011 Masante_2015
7 Chen_2013 Maintaining the structural integrity of the bamboo mosaic virus 3′ untranslated region is necessary for retaining the catalytic constant for minus-strand RNA synthesis Chen, I-Hsuan; Chu, Chiu-Heiu; Lin, Jen-Wen; Hsu, Yau-Heiu; Tsai, Ching-Hsiu 2013 2013-06-24 COMM-USE N PMC3720222 23800142.0 10.1186/1743-422x-10-208 jtn417z6 0.785558 Chen_2013, Stork_2011, Banerjee_2001, Rice_1992 Tzeng_2006, Adams_2003
8 Crescenzo-Chaigne_2014 Chimeric NP Non Coding Regions between Type A and C Influenza Viruses Reveal Their Role in Translation Regulation Crescenzo-Chaigne, Bernadette; Barbezange, Cyril; Frigard, Vianney; Poulain, Damien; van der Werf, Sylvie 2014 2014-09-30 COMM-USE N PMC4182659 25268971.0 10.1371/journal.pone.0109046 b4zcvd04 0.747345 Rice_1992, Auewarakul_2005 Tzeng_2006
9 Okamoto_2008 cis-Preferential requirement of a −1 frameshift product p88 for the replication of Red clover necrotic mosaic virus RNA1 Okamoto, Kimiyuki; Nagano, Hideaki; Iwakawa, Hirooki; Mizumoto, Hiroyuki; Takeda, Atsushi; Kaido, Masanori; Mise, Kazuyuki; Okuno, Tetsuro 2008 2008-05-25 PMC N PMC7103404 18308359.0 10.1016/j.virol.2008.02.004 0u62j7nj 0.725290 Stork_2011, Chen_2013, Rice_1992 Bhullar_2014, Tzeng_2006
10 Zhang_2019 A Reverse Genetics System for Cypovirus Based on a Bacmid Expressing T7 RNA Polymerase Zhang, Gaobo; Yang, Jian; Qin, Fujun; Xu, Congrui; Wang, Jia; Lei, Chengfeng; Hu, Jia; Sun, Xiulian 2019 2019-04-01 COMM-USE N PMC6521135 30939777.0 10.3390/v11040314 ski6wx48 0.714244 Rice_1992 Tzeng_2006
11 Wang_2001 Specific Inhibition of Coxsackievirus B3 Translation and Replication by Phosphorothioate Antisense Oligodeoxynucleotides Wang, Aikun; Cheung, Paul K. M.; Zhang, Huifang; Carthy, Christopher M.; Bohunek, Lubos; Wilson, Janet E.; McManus, Bruce M.; Yang, Decheng 2001 2001-04-01 None N PMC90423 11257014.0 10.1128/aac.45.4.1043-1052.2001 t78fyys0 0.713496 Stork_2011, Masaki_2015, Rice_1992 Masante_2015, DEN_BOON_1995, Tzeng_2006
12 Satyanarayana_2003 Frameshift mutations in infectious cDNA clones of Citrus tristeza virus: a strategy to minimize the toxicity of viral sequences to Escherichia coli Satyanarayana, Tatineni; Gowda, Siddarame; Ayllón, María A; Dawson, William O 2003 2003-09-01 PMC N PMC7125997 12954215.0 10.1016/s0042-6822(03)00387-8 ndjbrtrv 0.698539 Rice_1992, Lamb_1991 Tzeng_2006, Nowak_1984
13 Chen_2013 Characterization of the polyadenylation activity in a replicase complex from Bamboo mosaic virus-infected Nicotiana benthamiana plants Chen, I-Hsuan; Cheng, Jai-Hong; Huang, Ying-Wen; Lin, Na-Sheng; Hsu, Yau-Heiu; Tsai, Ching-Hsiu 2013 2013-09-30 PMC N PMC7111917 23768785.0 10.1016/j.virol.2013.05.032 vyo8l14p 0.671763 Stork_2011, Banerjee_2001, Rice_1992, Okamoto_2008 Nowak_1984, Chen_2013, Adams_2003
14 Geng_2019 Variable 3’polyadenylation of Wheat yellow mosaic virus and its novel effects on translation and replication Geng, Guowei; Yu, Chengming; Li, Xiangdong; Yuan, Xuefeng 2019 2019-02-20 COMM-USE N PMC6383263 30786887.0 10.1186/s12985-019-1130-z l2qrlpwh 0.653407 Chen_2013, Lamb_1991, Stork_2011, Chen_2017, Banerjee_2001 Bhullar_2014, Gutiérrez-Escolano_2003
15 Yu_D_2009 Reverse genetic manipulation of the overlapping coding regions for structural proteins of the type II porcine reproductive and respiratory syndrome virus Yu, Dandan; Lv, Jian; Sun, Zhi; Zheng, Haihong; Lu, Jiaqi; Yuan, Shishan 2009 2009-01-05 PMC N 18977502.0 10.1016/j.virol.2008.09.013 t6v85tcm 0.647483 Rice_1992
16 Gao_F_2012 Cis-acting structural element in 5′ UTR is essential for infectivity of porcine reproductive and respiratory syndrome virus Gao, Fei; Lu, Jiaqi; Yao, Huochun; Wei, Zuzhang; Yang, Qian; Yuan, Shishan 2012 2012-01-31 PMC N PMC7114472 21924304.0 10.1016/j.virusres.2011.08.018 7ad7ievj 0.625015 Rice_1992, Stork_2011, Morikawa_1992, Banerjee_2001 Tzeng_2006, Masante_2015
17 Zhang_2007 Helper virus-independent trans-replication of hepatitis C virus-derived minigenome Zhang, Jing; Yamada, Osamu; Yoshida, Hiroshi; Sakamoto, Takashi; Araki, Hiromasa; Shimotohno, Kunitada 2007 2007-01-05 PMC N PMC7117360 17112469.0 10.1016/j.bbrc.2006.10.188 xnillpzd 0.597524 Rice_1992, Stork_2011 Tzeng_2006
18 Wang_2011 Poly(C)-Binding Protein 2 Interacts with Sequences Required for Viral Replication in the Hepatitis C Virus (HCV) 5′ Untranslated Region and Directs HCV RNA Replication through Circularizing the Viral Genome Wang, Linya; Jeng, King-Song; Lai, Michael M. C. 2011 2011-06-01 PMC N PMC3147998 21632751.0 10.1128/jvi.00339-11 r2j3yssb 0.591549 Stork_2011, Masaki_2015 Bhullar_2014
19 Masante_2015 Mutations of the SL2 dimerization sequence of the hepatitis C genome abrogate viral replication Masante, Cyril; Jaubert, Chloé; Palau, William; Plissonneau, Jacqueline; Besnard, Lucie; Ventura, Michel; Di Primo, Carmelo 2015 2015-03-28 PMC N PMC7079775 25822205.0 10.1007/s00018-015-1893-3 d9urjb9e 0.580984 Stork_2011, Rice_1992
20 Lu_J_2011 A 5'-proximal Stem-loop Structure of 5' Untranslated Region of Porcine Reproductive and Respiratory Syndrome Virus Genome Is Key for Virus Replication Lu, Jiaqi; Gao, Fei; Wei, Zuzhang; Liu, Ping; Liu, Changlong; Zheng, Haihong; Li, Yanhua; Lin, Tao; Yuan, Shishan 2011 2011-04-15 COMM-USE N PMC3096946 21496223.0 10.1186/1743-422x-8-172 k4q6nx73 0.568246 Rice_1992, Banerjee_2001, Hyde_2015, Stork_2011 Gao_F_2012
21 Pietilä_2017 Polyprotein Processing as a Determinant for In Vitro Activity of Semliki Forest Virus Replicase Pietilä, Maija K.; Albulescu, Irina C.; van Hemert, Martijn J.; Ahola, Tero 2017 2017-10-07 COMM-USE N PMC5691643 28991178.0 10.3390/v9100292 edpsib9s 0.562666 Stork_2011, Rice_1992, Pong_2011, Banerjee_2001 Tzeng_2006
22 Bhullar_2014 Cytoplasmic Translocation of Polypyrimidine Tract-Binding Protein and Its Binding to Viral RNA during Japanese Encephalitis Virus Infection Inhibits Virus Replication Bhullar, Deepika; Jalodia, Richa; Kalia, Manjula; Vrati, Sudhanshu 2014 2014-12-29 COMM-USE N PMC4278868 25545659.0 10.1371/journal.pone.0114931 35xqgbut 0.525184 Stork_2011, Rice_1992, Pong_2011 YU_W_1995
23 Pillai-Nair_2003 Cis-acting Regulatory Elements in the Potato Virus X 3′ Non-translated Region Differentially Affect Minus-strand and Plus-strand RNA Accumulation Pillai-Nair, Neeta; Kim, Kook-Hyung; Hemenway, Cynthia 2003 2003-02-21 PMC N PMC7126608 12581634.0 10.1016/s0022-2836(02)01369-4 ppjohov8 0.514970 Chen_2013, Banerjee_2001, Stork_2011, Chen_2017
24 Yun_S_2015 Bacterial Artificial Chromosomes: A Functional Genomics Tool for the Study of Positive-strand RNA Viruses Yun, Sang-Im; Song, Byung-Hak; Kim, Jin-Kyoung; Lee, Young-Min 2015 2015-12-29 NONCOMM N PMC4780872 26780115.0 10.3791/53164 2se4d1yp 0.509110 Rice_1992 Nowak_1984, Satyanarayana_2003
25 Han_M_2014 Engineering the PRRS virus genome: Updates and perspectives Han, Mingyuan; Yoo, Dongwan 2014 2014-12-05 PMC N 25458419.0 10.1016/j.vetmic.2014.10.007 wkisfz1m 0.494545 Rice_1992
26 Zheng_2010 Recombinant PRRSV expressing porcine circovirus sequence reveals novel aspect of transcriptional control of porcine arterivirus Zheng, Haihong; Sun, Zhi; Zhu, Xing-Quan; Long, Jinxue; Lu, Jiaqi; Lv, Jian; Yuan, Shishan 2010 2010-03-31 PMC N PMC7114387 19951727.0 10.1016/j.virusres.2009.11.014 vvcpfsj2 0.477342 Rice_1992
27 Meyer_2007 Identification of a novel protein encoded by the latency-related gene of bovine herpesvirus 1 Meyer, Florencia; Perez, Sandra; Jiang, Yunquan; Zhou, You; Henderson, Gail; Jones, Clinton 2007 2007-01-01 PMC N PMC7095411 18097888.0 10.1080/13550280701620754 gjm9dml1 0.461024 Wurch_1991 Tzeng_2006, Goldberg_1991
28 Masaki_2015 miR-122 Stimulates Hepatitis C Virus RNA Synthesis by Altering the Balance of Viral RNAs Engaged in Replication versus Translation Masaki, Takahiro; Arend, Kyle C.; Li, You; Yamane, Daisuke; McGivern, David R.; Kato, Takanobu; Wakita, Takaji; Moorman, Nathaniel J.; Lemon, Stanley M. 2015 2015-02-11 None N PMC4326553 25662750.0 10.1016/j.chom.2014.12.014 pmdera3v 0.459736 Stork_2011 Masante_2015, Bhullar_2014
29 Gendron_2010 The activity of the HIV-1 IRES is stimulated by oxidative stress and controlled by a negative regulatory element Gendron, Karine; Ferbeyre, Gerardo; Heveker, Nikolaus; Brakier-Gingras, Léa 2010 2010-10-08 None N PMC3035469 20935056.0 10.1093/nar/gkq885 qtn3ukf4 0.436418 Chen_2013, Landry_2009, Morikawa_1992 Fajardo_2012
30 Chen_2018 The conserved stem-loop II structure at the 3' untranslated region of Japanese encephalitis virus genome is required for the formation of subgenomic flaviviral RNA Chen, Yi-Shiuan; Fan, Yi-Hsin; Tien, Chih-Feng; Yueh, Andrew; Chang, Ruey-Yi 2018 2018-07-26 COMM-USE N PMC6062100 30048535.0 10.1371/journal.pone.0201250 3se1wp8o 0.427921 Stork_2011, Chen_2013, Banerjee_2001
31 Ortego_2003 Transmissible gastroenteritis coronavirus gene 7 is not essential but influences in vivo virus replication and virulence Ortego, Javier; Sola, Isabel; Almazán, Fernando; Ceriani, Juan E; Riquelme, Cristina; Balasch, Monica; Plana, Juan; Enjuanes, Luis 2003 2003-03-30 PMC N PMC7126239 12706086.0 10.1016/s0042-6822(02)00096-x oxyzndsj 0.421452 Rice_1992 Tzeng_2006
32 Tajima_2011 A long-distance RNA–RNA interaction plays an important role in programmed −1 ribosomal frameshifting in the translation of p88 replicase protein of Red clover necrotic mosaic virus Tajima, Yuri; Iwakawa, Hiro-oki; Kaido, Masanori; Mise, Kazuyuki; Okuno, Tetsuro 2011 2011-08-15 PMC N PMC7111920 21703656.0 10.1016/j.virol.2011.05.012 ywjk962a 0.403304 Stork_2011, Chen_2013, Lamb_1991 Bhullar_2014, Sasvari_2011, Okamoto_2008
33 Shabman_2013 An Upstream Open Reading Frame Modulates Ebola Virus Polymerase Translation and Virus Replication Shabman, Reed S.; Hoenen, Thomas; Groseth, Allison; Jabado, Omar; Binning, Jennifer M.; Amarasinghe, Gaya K.; Feldmann, Heinz; Basler, Christopher F. 2013 2013-01-31 COMM-USE N PMC3561295 23382680.0 10.1371/journal.ppat.1003147 wncab2qc 0.396538 Lamb_1991, Gendron_2010, Rice_1992, Morikawa_1992 Gao_F_2012, Tzeng_2006
34 Sztuba-Solinska_2016 A small stem-loop structure of the Ebola virus trailer is essential for replication and interacts with heat-shock protein A8 Sztuba-Solinska, Joanna; Diaz, Larissa; Kumar, Mia R.; Kolb, Gaëlle; Wiley, Michael R.; Jozwick, Lucas; Kuhn, Jens H.; Palacios, Gustavo; Radoshitzky, Sheli R.; J. Le Grice, Stuart F.; Johnson, Reed F. 2016 2016-11-16 PMC N PMC5175359 27651462.0 10.1093/nar/gkw825 08tknscm 0.381708 Stork_2011, Pong_2011, Rice_1992 Bhullar_2014
35 Li_C_2007 A Sabin 1 poliovirus-based vaccine vector transfects Vero cells with high efficiency Li, Changgui; Han, Wei; Zhang, Yingqi; Wang, Junzhi 2007 2007-07-01 PMC N PMC2267503 19003009.0 10.1007/s10616-007-9085-0 aw1g82bc 0.349712 Rice_1992
36 Zeng_2020 Leveraging mRNAs sequences to express SARS-CoV-2 antigens in vivo Chunxi Zeng; Xucheng Hou; Jingyue Yan; Chengxiang Zhang; Wenqing Li; Weiyu Zhao; Shi Du; Yizhou Dong 2020 2020-04-05 BioRxiv Y 10.1101/2020.04.01.019877 aju2nr9x 0.337188 Lamb_1991
37 Chen_2017 The Functional Roles of the Cis-acting Elements in Bamboo mosaic virus RNA Genome Chen, I-Hsuan; Huang, Ying-Wen; Tsai, Ching-Hsiu 2017 2017-04-13 COMM-USE N PMC5390519 28450857.0 10.3389/fmicb.2017.00645 tu50ab1b 0.330896 Stork_2011, Rice_1992, Chen_2013 Bhullar_2014, Tzeng_2006
38 Fan_Z_2012 An alternative −1/+2 open reading frame exists within viral Npro(1–19) region of bovine viral diarrhea virus SD-1 Fan, Zhen-Chuan; Bird, R. Curtis 2012 2012-01-31 PMC N 22079882.0 10.1016/j.virusres.2011.10.022 xlw4b8fy 0.315473 Rice_1992
39 Sipley_1991 Bacteriophage T7 morphogenesis and gene 10 frameshifting in Escherichia coli showing different degrees of ribosomal fidelity Sipley, John; Dunn, John; Goldman, Emanuel 1991 1991-01-01 PMC N PMC7088377 1766436.0 10.1007/bf00280294 7flxo83l 0.313310 Plant_2013, Stork_2011, Auewarakul_2005 Nowak_1984, Satyanarayana_2003, Tzeng_2006
40 Gutiérrez-Escolano_2003 La, PTB, and PAB proteins bind to the 3′ untranslated region of Norwalk virus genomic RNA Gutiérrez-Escolano, Ana Lorena; Vázquez-Ochoa, Melina; Escobar-Herrera, Jaime; Hernández-Acosta, Javier 2003 2003-11-21 PMC N PMC7111188 14623338.0 10.1016/j.bbrc.2003.10.066 hm8d42fq 0.307389 Stork_2011
41 Brierley_1987 An efficient ribosomal frame-shifting signal in the polymerase-encoding region of the coronavirus IBV. Brierley, I; Boursnell, M E; Binns, M M; Bilimoria, B; Blok, V C; Brown, T D; Inglis, S C 1987 1987-12-01 PMC N PMC553849 3428275.0 zyaqh139 0.303075 Morikawa_1992, Lamb_1991, Wurch_1991, Vennema_1991, Krause_1987 Nowak_1984, Tzeng_2006
42 Yu_F_2007 Identification and characterization of RNA-dependent RNA polymerase activity in recombinant Japanese encephalitis virus NS5 protein Yu, F.; Hasebe, F.; Inoue, S.; Mathenge, E. G. M.; Morita, K. 2007 2007-06-18 PMC N PMC7086876 17577613.0 10.1007/s00705-007-1007-0 s0lcyjgh 0.302460 Stork_2011, Pong_2011, Rice_1992 Tzeng_2006, Nowak_1984
43 Khromykh_1996 RNA binding properties of core protein of the flavivirus Kunjin Khromykh, A. A.; Westaway, E. G. 1996 1996-01-01 PMC N PMC7086803 8645104.0 10.1007/bf01718326 66t5fjld 0.300520 Pong_2011, Stork_2011, Luytjes_1988, Banerjee_2001, Vennema_1991 Goldberg_1991