Topic 04 -- Abstracts with Biological Entities (English) - 75 Topics / Sub-Topic Model 19 - 15 Topics

cite ad title authors publish year publish time dataset abstract mentions covid pmcid pubmed id doi cord uid topic weight Similarity scispacy Similarity specter
1 Banerjee_2001 Enhanced Accumulation of Coronavirus Defective Interfering RNA from Expressed Negative-Strand Transcripts by Coexpressed Positive-Strand RNA Transcripts Banerjee, Sangeeta; Repass, John F.; Makino, Shinji 2001 2001-09-01 PMC N PMC7133719 11531407.0 10.1006/viro.2001.1047 0yp4c4ks 0.985243 Stork_2011, Rice_1992, Mizutani_2000, Chen_2013 Bhullar_2014
2 Mizutani_2000 Nascent Synthesis of Leader Sequence-Containing Subgenomic mRNAs in Coronavirus Genome-Length Replicative Intermediate RNA Mizutani, Tetsuya; Repass, John F.; Makino, Shinji 2000 2000-09-30 PMC N PMC7130702 10998322.0 10.1006/viro.2000.0489 w8vy5rl8 0.943728 Banerjee_2001, Stork_2011, Rice_1992, Chen_2013 Baric_1985, Bhullar_2014
3 An_S_1998 Characterizations of Coronaviruscis-Acting RNA Elements and the Transcription Step Affecting Its Transcription Efficiency An, Sungwhan; Makino, Shinji 1998 1998-03-30 PMC N PMC7133654 9527929.0 10.1006/viro.1998.9059 85zntq7i 0.903703 Banerjee_2001, Rice_1992, Lamb_1991, Stork_2011 JEONG_1996
4 Maeda_1998 Importance of coronavirus negative-strand genomic RNA synthesis prior to subgenomic RNA transcription Maeda, Akihiko; An, Sungwhan; Makino, Shinji 1998 1998-09-30 PMC N PMC7127783 9833884.0 10.1016/s0168-1702(98)00090-2 d7yxkpf2 0.899415 Rice_1992, Banerjee_2001, Stork_2011, Mizutani_2000, Payne_2017 Mizutani_2000
5 Leibowitz_1981 The virus-specific intracellular RNA species of two murine coronaviruses: MHV-A59 and MHV-JHM Leibowitz, Julian L.; Wilhelmsen, Kirk C.; Bond, Clifford W. 1981 1981-10-15 PMC N PMC7131044 7281517.0 10.1016/0042-6822(81)90250-6 999kewdw 0.882391 Rice_1992, Stork_2011, Banerjee_2001, Mizutani_2000, Payne_2017 Nowak_1984, Baric_1985
6 LUYTJES_1996 Replication of Synthetic Defective Interfering RNAs Derived from Coronavirus Mouse Hepatitis Virus-A59 LUYTJES, WILLEM; GERRITSMA, HELEEN; SPAAN, WILLY J.M. 1996 1996-02-01 PMC N PMC7130680 8614984.0 10.1006/viro.1996.0044 ejgkrxoe 0.880756 Banerjee_2001, Rice_1992, Auewarakul_2005, An_S_1998
7 Makino_1988 Defective-interfering particles of murine coronavirus: Mechanism of synthesis of defective viral RNAs Makino, Shinji; Shieh, Chien-Kou; Keck, James G.; Lai, Michael M.C. 1988 1988-03-31 PMC N PMC7131348 2831651.0 10.1016/0042-6822(88)90237-1 pbn9n37n 0.880215 Stork_2011, Rice_1992, Banerjee_2001
8 Baric_1985 Characterization of leader-related small RNAs in coronavirus-infected cells: Further evidence for leader-primed mechanism of transcription Baric, Ralph S.; Stohlman, Stephen A.; Razavi, Mahmood K.; Lai, Michael M.C. 1985 1985-07-31 PMC N PMC7133907 2992183.0 10.1016/0168-1702(85)90038-3 ztmrrii3 0.835987 Banerjee_2001, Stork_2011, An_S_1998, Krause_1987, Rice_1992 Baker_1990
9 Baker_1990 An in vitro system for the leader-primed transcription of coronavirus mRNAs. Baker, S C; Lai, M M 1990 1990-12-23 PMC N PMC552193 2174358.0 fma25t1n 0.830318 Stork_2011, Banerjee_2001, Lin_X_2015, Chen_2013, Rice_1992 Baric_1985
10 Makino_1989 Evolution of the 5′-end of genomic rna of murine coronaviruses during passages in vitro Makino, Shinji; Lai, Michael M.C. 1989 1989-03-31 PMC N PMC7131712 2538033.0 10.1016/0042-6822(89)90060-3 1esr4qcz 0.819755 Rice_1992, Auewarakul_2005, Morikawa_1992, Lamb_1991 Makino_1988
11 Makino_1984 Analysis of genomic and intracellular viral RNAs of small plaque mutants of mouse hepatitis virus, JHM strain Makino, Shinji; Taguchi, Fumihiro; Hirano, Norio; Fujiwara, Kosaku 1984 1984-11-30 PMC N PMC7119021 6093379.0 10.1016/0042-6822(84)90335-0 ahxwa34k 0.812754 Rice_1992, Banerjee_2001, Auewarakul_2005, Stork_2011
12 Zongyu_1994 Detection of negative-stranded subgenomic RNAs but not of free leader in LDV-infected macrophages Zongyu, Chen; Faaberg, Kay S.; Plagemann, Peter G.W. 1994 1994-11-30 PMC N PMC7133802 7856308.0 10.1016/0168-1702(94)90098-1 sw95s6xe 0.800404 Banerjee_2001, Stork_2011, Rice_1992, Mizutani_2000, Chen_2013 Baric_1985, Mizutani_2000
13 Pasternak_2001 Sequence requirements for RNA strand transfer during nidovirus discontinuous subgenomic RNA synthesis Pasternak, Alexander O.; van den Born, Erwin; Spaan, Willy J.M.; Snijder, Eric J. 2001 2001-12-17 PMC N PMC125340 11742998.0 10.1093/emboj/20.24.7220 zjufx4fo 0.791858 Stork_2011, Morikawa_1992, Krause_1987, Banerjee_2001, Lai_M_2005 Adams_2003
14 Hiscox_1995 Quantification of individual subgenomic mRNA species during replication of the coronavirus transmissible gastroenteritis virus Hiscox, Julian A.; Cavanagh, David; Britton, Paul 1995 1995-05-31 PMC N PMC7134076 7653093.0 10.1016/0168-1702(94)00108-o wi2hhsmh 0.790053 Auewarakul_2005, Banerjee_2001, Krause_1987, An_S_1998 DEN_BOON_1995, Tzeng_2006
15 Zhang_1997 Recombinant Genomic RNA of Coronavirus MHV-A59 after Coreplication with a DI RNA Containing the MHV-RI Spike Gene Zhang, Linong; Homberger, Felix; Spaan, Willy; Luytjes, Willem 1997 1997-03-31 PMC N PMC7130785 9126265.0 10.1006/viro.1997.8460 s3hval1a 0.784932 Rice_1992, Banerjee_2001, Stork_2011, Brown_1984 Nowak_1984
16 Pattnaik_1995 The termini of VSV DI particle RNAs are sufficient to signal RNA encapsidation, replication, and budding to generate infectious particles Pattnaik, Asit K.; Ball, L. Andrew; Legrone, Alison; Wertz, Gail W. 1995 1995-01-10 PMC N 7831839.0 10.1016/s0042-6822(95)80005-0 rbwag5qi 0.783285 Rice_1992, Banerjee_2001, Stork_2011, Payne_2017 Tzeng_2006, Bhullar_2014
17 Keck_1987 Multiple recombination sites at the 5′-end of murine coronavirus RNA Keck, James G.; Stohlman, Stephen A.; Side, Lisa H.; Makino, Shinji; Lai, Michael M.C. 1987 1987-02-28 PMC N PMC7130635 3027982.0 10.1016/0042-6822(87)90413-2 qvcgebjg 0.779993 Rice_1992, Auewarakul_2005, Morikawa_1992, Bertholet_1987 Tzeng_2006
18 Pasternak_2004 Regulation of Relative Abundance of Arterivirus Subgenomic mRNAs Pasternak, Alexander O.; Spaan, Willy J. M.; Snijder, Eric J. 2004 2004-07-14 None N PMC446141 15254182.0 10.1128/jvi.78.15.8102-8113.2004 m76ls89z 0.770639 Banerjee_2001, Stork_2011, Lamb_1991, Rice_1992, Payne_2017
19 Perlman_1986 MHV nucleocapsid synthesis in the presence of cycloheximide and accumulation of negative strand MHV RNA Perlman, Stanley; Ries, Dana; Bolger, Eric; Lung-Ji, Chang; Stoltzfus, C.Martin 1986 1986-12-31 PMC N PMC7133998 3033933.0 10.1016/0168-1702(86)90074-2 fhvstenq 0.769822 Stork_2011, Banerjee_2001, Masante_2015, Masaki_2015
20 Yeh_P_2014 Identification of Cis-Acting Elements on Positive-Strand Subgenomic mRNA Required for the Synthesis of Negative-Strand Counterpart in Bovine Coronavirus Yeh, Po-Yuan; Wu, Hung-Yi 2014 2014-07-30 COMM-USE N PMC4147681 25080125.0 10.3390/v6082938 57jwhbcv 0.736293 Morikawa_1992, Krause_1987, Stork_2011, Lamb_1991, Chen_2017 Liao_2014
21 Derdeyn_1995 Characterization of defective-interfering RNAs of rubella virusgenerated during serial undiluted passage Derdeyn, Cynthia A.; Frey, Teryl K. 1995 1995-01-10 PMC N PMC7130850 7831776.0 10.1016/s0042-6822(95)80036-0 jbp8bxjz 0.729290 Banerjee_2001, An_S_1998, Bertholet_1987, Auewarakul_2005, Rice_1992 Tzeng_2006, Adams_2003
22 Neill_1988 Further characterization of the virus-specific RNAs in feline calicivirus infected cells Neill, John D.; Mengeling, William L. 1988 1988-08-31 PMC N 3176687.0 10.1016/0168-1702(88)90067-6 s8hdoq4a 0.728770 Banerjee_2001, Mizutani_2000, Brown_1984, An_S_1998
23 La_Monica_1992 Coronavirus mRNA synthesis: Identification of novel transcription initiation signals which are differentially regulated by different leader sequences La Monica, Nicola; Yokomori, Kyoko; Lai, Michael M.C. 1992 1992-05-31 PMC N PMC7131442 1566582.0 10.1016/0042-6822(92)90774-j 7e477y1x 0.718224 Krause_1987, Morikawa_1992, Rice_1992, Lamb_1991, An_S_1998 Baker_1990
24 Keck_1988 Temporal regulation of bovine coronavirus RNA synthesis Keck, James G.; Hogue, Brenda G.; Brian, David A.; Lai, Michael M.C. 1988 1988-03-31 PMC N PMC7134124 3376552.0 10.1016/0168-1702(88)90093-7 fl6h1lrn 0.718113 Banerjee_2001, Stork_2011, Rice_1992, Masaki_2015, Payne_2017 Baric_1987
25 JEONG_1996 Coronavirus Transcription Mediated by Sequences Flanking the Transcription Consensus Sequence JEONG, YONG SEOK; REPASS, JOHN F.; KIM, YOUNG-NAM; HWANG, SUN-MIN; MAKINO, SHINJI 1996 1996-03-01 PMC N PMC7131137 8599216.0 10.1006/viro.1996.0118 gkg1059v 0.710000 An_S_1998, Rice_1992, Banerjee_2001, Morikawa_1992 An_S_1998
26 Liao_2014 The 3′-Terminal 55 Nucleotides of Bovine Coronavirus Defective Interfering RNA Harbor Cis-Acting Elements Required for Both Negative- and Positive-Strand RNA Synthesis Liao, Wei-Yu; Ke, Ting-Yung; Wu, Hung-Yi 2014 2014-05-22 COMM-USE N PMC4031142 24852421.0 10.1371/journal.pone.0098422 q4cs2h29 0.705876 Stork_2011, Banerjee_2001, Rice_1992, Chen_2017, Lin_X_2015
27 KRISHNAN_1996 Tandem Placement of a Coronavirus Promoter Results in Enhanced mRNA Synthesis from the Downstream-Most Initiation Site KRISHNAN, RAJESH; CHANG, RUEY-YI; BRIAN, DAVID A. 1996 1996-04-15 PMC N PMC7130602 8610468.0 10.1006/viro.1996.0210 xq1dxmb9 0.691880 Morikawa_1992, Krause_1987, Lamb_1991, Gendron_2010
28 Banner_1990 A clustering of rna recombination sites adjacent to a hypervariable region of the peplomer gene of murine coronavirus Banner, Lisa R.; Keck, James G.; Lai, Michael M.C. 1990 1990-04-30 PMC N PMC7130556 2158184.0 10.1016/0042-6822(90)90439-x tqeo15ar 0.679270 Morikawa_1992, Auewarakul_2005, Rice_1992 Nowak_1984
29 Baric_1987 Analysis of intracellular small RNAs of mouse hepatitis virus: evidence for discontinuous transcription Baric, Ralph S.; Shieh, Chien-Kou; Stohlman, Stephen A.; Lai, Michael M.C. 1987 1987-02-28 PMC N PMC7130593 3027983.0 10.1016/0042-6822(87)90414-4 ck7eto16 0.672729 Stork_2011, Rice_1992, Payne_2017, Banerjee_2001 Baric_1985, Nowak_1984
30 Spaan_1983 Coronavirus mRNA synthesis involves fusion of non-contiguous sequences. Spaan, W; Delius, H; Skinner, M; Armstrong, J; Rottier, P; Smeekens, S; van der Zeijst, B A; Siddell, S G 1983 1983-01-01 PMC N PMC555368 6196191.0 jzngtd06 0.663135 Lamb_1991, Rice_1992, Payne_2017, Stork_2011 Gopinath_2015, Tzeng_2006
31 DEN_BOON_1995 Equine Arteritis Virus Subgenomic RNA Transcription: UV Inactivation and Translation Inhibition Studies DEN BOON, JOHAN A.; SPAAN, WILLY J.M.; SNIJDER, ERIC J. 1995 1995-11-30 PMC N PMC7131190 7491761.0 10.1006/viro.1995.0009 il9vbbgk 0.649578 Rice_1992, Stork_2011, Banerjee_2001
32 Carter_1990 Transcription of feline calicivirus RNA Carter, M. J. 1990 1990-01-01 PMC N PMC7087285 2241572.0 10.1007/bf01310744 2cfphi88 0.647469 Rice_1992, Stork_2011, Banerjee_2001, Lin_X_2015 Carter_1992, Adams_2003, Tzeng_2006
33 Lai_M_2005 Coronavirus leader‐RNA‐primed transcription: An alternative mechanism to RNA splicing Lai, Michael M. C. 2005 2005-02-05 PMC N PMC7161880 3551939.0 10.1002/bies.950050606 7xkj27ph 0.643421 Stork_2011, Rice_1992, Lin_X_2015
34 Banner_1991 Random nature of coronavirus RNA recombination in the absence of selection pressure Banner, Lisa R.; Mc Lai, Michael 1991 1991-11-30 PMC N PMC7131166 1656597.0 10.1016/0042-6822(91)90795-d ao29zx1u 0.642610 Rice_1992, Auewarakul_2005 Banner_1990
35 Sawicki_1986 The effect of loss of regulation of minus-strand RNA synthesis on sindbis virus replication Sawicki, Stanley G.; Sawicki, Dorothea L. 1986 1986-06-30 PMC N PMC7131060 3705466.0 10.1016/0042-6822(86)90054-1 u8otoxn4 0.634326 Stork_2011, Banerjee_2001, Rice_1992 Sasvari_2011
36 van_Vliet_2002 Discontinuous and non-discontinuous subgenomic RNA transcription in a nidovirus van Vliet, A.L.W.; Smits, S.L.; Rottier, P.J.M.; de Groot, R.J. 2002 2002-12-01 PMC N PMC136939 12456663.0 10.1093/emboj/cdf635 i0zym7iq 0.627312 Stork_2011, Rice_1992, Lamb_1991, Banerjee_2001, Payne_2017 Enjuanes_2008, Tzeng_2006
37 Brian_1997 Recombination and Coronavirus Defective Interfering RNAs Brian, David A.; Spaan, Willy J.M. 1997 1997-12-31 PMC N PMC7129747 10.1006/smvy.1997.0109 8sein6kc 0.625264 Rice_1992, Stork_2011, Payne_2017, Banerjee_2001 Tzeng_2006
38 Sawicki_2005 Coronavirus Transcription: A Perspective Sawicki, S. G.; Sawicki, D. L. 2005 2005-01-01 PMC N PMC7121018 15609508.0 10.1007/3-540-26765-4_2 cbsadvbu 0.624214 Stork_2011, Banerjee_2001, Rice_1992, Lin_X_2015 Baker_1990, Mizutani_2000
39 Makino_1988 Primary structure and translation of a defective interfering rna of murine coronavirus Makino, Shinji; Shieh, Chien-Kou; Soe, Lisa H.; Baker, Susan C.; Lai, Michael M.C. 1988 1988-10-31 PMC N PMC7131284 2845661.0 10.1016/0042-6822(88)90526-0 vtrfqozl 0.599332 Morikawa_1992, Hatfield_1990, Lamb_1991, Krause_1987, Firth_2009 Tzeng_2006
40 Ke_T_2013 A Leaderless Genome Identified during Persistent Bovine Coronavirus Infection Is Associated with Attenuation of Gene Expression Ke, Ting-Yung; Liao, Wei-Yu; Wu, Hung-Yi 2013 2013-12-12 COMM-USE N PMC3861326 24349214.0 10.1371/journal.pone.0082176 5gn2qy8g 0.597444 Rice_1992, Stork_2011, Banerjee_2001, Lamb_1991, Auewarakul_2005 Tzeng_2006
41 Cheley_1981 Intracellular murine hepatitis virus-specific RNAs contain common sequences Cheley, Steve; Anderson, Robert; Cupples, Margaret J.; Lee Chan, Edwin C.M.; Morris, Vincent L. 1981 1981-07-30 PMC N PMC7131256 6114592.0 10.1016/0042-6822(81)90305-6 lfx2a3qi 0.587962 Stork_2011, Rice_1992, Banerjee_2001, Mizutani_2000, Chen_2013 Nowak_1984
42 Tzeng_2006 C-E1 fusion protein synthesized by rubella virus DI RNAs maintained during serial passage Tzeng, Wen-Pin; Frey, Teryl K. 2006 2006-12-20 None N PMC2694048 16938325.0 10.1016/j.virol.2006.07.041 sik7m86l 0.564439 Rice_1992, Banerjee_2001, Stork_2011, Payne_2017 Adams_2003
43 Adams_2003 Analysis of intermolecular RNA–RNA recombination by rubella virus Adams, Sandra D.; Tzeng, Wen-Pin; Chen, Min-Hsin; Frey, Teryl K. 2003 2003-05-10 PMC N PMC7126107 12758173.0 10.1016/s0042-6822(03)00064-3 5ld0o9gv 0.553370 Morikawa_1992, Rice_1992, Banerjee_2001, Lamb_1991, Auewarakul_2005 Tzeng_2006
44 Parsons_1984 Trypanosome mRNAs share a common 5′ spliced leader sequence Parsons, Marilyn; Nelson, Richard G.; Watkins, Kenneth P.; Agabian, Nina 1984 1984-08-31 PMC N PMC7133311 6088073.0 10.1016/0092-8674(84)90552-x 5r0oc9kz 0.536299 Krause_1987, Lamb_1991, Bertholet_1987 Milhausen_1984, Samal_2013, Baric_1985
45 Kirkegaard_1986 The mechanism of RNA recombination in poliovirus Kirkegaard, Karla; Baltimore, David 1986 1986-11-07 PMC N PMC7133339 3021340.0 10.1016/0092-8674(86)90600-8 p0nwbgun 0.531603 Rice_1992, Auewarakul_2005, Stork_2011 Adams_2003
46 Cologna_2000 Identification of Nucleocapsid Binding Sites within Coronavirus-Defective Genomes Cologna, Raymond; Spagnolo, Jeannie F.; Hogue, Brenda G. 2000 2000-11-25 PMC N PMC7131401 11080472.0 10.1006/viro.2000.0611 zo2ff0jk 0.517997 Rice_1992, Stork_2011, Banerjee_2001, Lin_X_2015 Bhullar_2014
47 Yokomori_1991 Heterogeneity of gene expression of the hemagglutinin-esterase (HE) protein of murine coronaviruses Yokomori, Kyoko; Banner, Lisa R.; Lai, Michael M.C. 1991 1991-08-31 PMC N PMC7130567 1649505.0 10.1016/0042-6822(91)90994-m wbwb90h8 0.517629 Rice_1992, Auewarakul_2005, Morikawa_1992
48 Nagy_1998 Dissecting RNA recombination in vitro: role of RNA sequences and the viral replicase. Nagy, P D; Zhang, C; Simon, A E 1998 1998-04-15 PMC N PMC1170582 9545250.0 10.1093/emboj/17.8.2392 sfue9fdb 0.503273 Stork_2011, Lin_X_2015, Morikawa_1992, Chen_2013, Pong_2011 Adams_2003, Bhullar_2014
49 MÉNDEZ_1996 Molecular Characterization of Transmissible Gastroenteritis Coronavirus Defective Interfering Genomes: Packaging and Heterogeneity MÉNDEZ, ANA; SMERDOU, CRISTIAN; IZETA, ANDER; GEBAUER, FÁTIMA; ENJUANES, LUIS 1996 1996-03-15 PMC N PMC7131039 8610441.0 10.1006/viro.1996.0144 i9q5il41 0.502816 Banerjee_2001, Rice_1992, Auewarakul_2005, Brown_1984, Payne_2017 Tzeng_2006, Derdeyn_1995
50 Knorr_1991 De novo generation of defective interfering RNAs of tomato bushy stunt virus by high multiplicity passage Knorr, D.A.; Mullin, R.H.; Hearne, P.Q.; Morris, T.J. 1991 1991-03-31 PMC N PMC7131041 1994574.0 10.1016/0042-6822(91)90484-s xo4mbxei 0.477237 Rice_1992, Banerjee_2001, Auewarakul_2005, Payne_2017, Stork_2011 Tzeng_2006, Derdeyn_1995
51 Gordon_1985 Subgenomic RNAs with nucleotide sequences derived from RNAs 1 and 2 of cucumber mosaic virus can act as messenger RNAsin Vitro Gordon, Karl H.J.; Symons, Robert H. 1985 1985-04-15 PMC N 10.1016/0042-6822(85)90429-5 2w2hfpv3 0.476425 Banerjee_2001, Stork_2011, Chen_2013
52 Zhang_2000 Identification of a Noncanonical Signal for Transcription of a Novel Subgenomic mRNA of Mouse Hepatitis Virus: Implication for the Mechanism of Coronavirus RNA Transcription Zhang, Xuming; Liu, Runzhong 2000 2000-12-05 PMC N PMC7130745 11112483.0 10.1006/viro.2000.0637 z5uhrta5 0.464049 Morikawa_1992, Gendron_2010, Krause_1987, Jendrach_2014, Wurch_1991
53 YU_W_1995 A Conserved Motif at the 3′ End of Mouse Hepatitis Virus Genomic RNA Required for Host Protein Binding and Viral RNA Replication YU, WEI; LEIBOWITZ, JULIAN L. 1995 1995-12-01 PMC N PMC7130855 8525608.0 10.1006/viro.1995.9947 p9dl7whd 0.457047 Stork_2011, Rice_1992, Banerjee_2001, Pong_2011 Bhullar_2014, Nowak_1984
54 Page_1990 Sequence analysis of the leader RNA of two porcine coronaviruses: Transmissible gastroenteritis virus and porcine respiratory coronavirus Page, Kevin W.; Britton, Paul; Boursnell, Michael E. G. 1990 1990-01-01 PMC N PMC7088910 1962975.0 10.1007/bf00570024 o81j3d1j 0.456044 Rice_1992, Banerjee_2001, Stork_2011 Baric_1985
55 Schwer_1987 Discontinuous transcription or RNA processing of vaccinia virus late messengers results in a 5′ poly(A) leader Schwer, Beate; Visca, Paolo; Vos, Jan C.; Stunnenberg, Hendrik G. 1987 1987-07-17 PMC N 3594569.0 10.1016/0092-8674(87)90212-1 63160t7f 0.430053 Krause_1987, Morikawa_1992, Bertholet_1987, An_S_1998, Banerjee_2001 Nowak_1984
56 Lai_M_1996 Recombination in large RNA viruses: Coronaviruses Lai, Michael M.C. 1996 1996-12-31 PMC N 10.1006/smvy.1996.0046 2s14knw6 0.421350 Rice_1992, Stork_2011, Payne_2017, Auewarakul_2005
57 Roux_1991 Effects of Defective Interfering Viruses on Virus Replication and Pathogenesis In Vitro and In Vivo Roux, Laurent; Simon, Anne E.; Holland, John J. 1991 1991-12-31 PMC N 1957718.0 10.1016/s0065-3527(08)60279-1 e4e0jt5s 0.410751 Rice_1992, Auewarakul_2005, Ryu_W_2017, Payne_2017 Makino_1988, Tzeng_2006
58 Lenstra_1988 Synthesis of long cDNA from viral RNA template Lenstra, J.A.; De Groot, R.J.; Jacobs, L.; Kusters, J.G.; Niesters, H.G.M.; Van Der Zeijst, B.A.M. 1988 1988-06-30 PMC N 3192156.0 10.1016/0735-0651(88)90017-9 rd61t7ln 0.399584 Stork_2011, Majerciak_2018, An_S_1998 Nowak_1984
59 Raffo_1991 Construction of tobacco mosaic virus subgenomic replicons that are replicated and spread systemically in tobacco plants Raffo, Anthony J.; Dawson, William O. 1991 1991-09-30 PMC N 1871972.0 10.1016/0042-6822(91)90844-2 7i14nsmg 0.393502 Rice_1992, Banerjee_2001 Tzeng_2006, Adams_2003
60 Krause_1987 A trans-spliced leader sequence on actin mRNA in C. elegans Krause, Michael; Hirsh, David 1987 1987-06-19 PMC N 10.1016/0092-8674(87)90613-1 hpv6916w 0.385564 Lamb_1991, Morikawa_1992, Hatfield_1990 Samal_2013, Parsons_1984, Schwer_1987
61 Marr_2003 Mismatch Extension During Strong Stop Strand Transfer and Minimal Homology Requirements for Replicative Template Switching During Moloney Murine Leukemia Virus Replication Marr, Sharon Fodor; Telesnitsky, Alice 2003 2003-07-18 PMC N 12850138.0 10.1016/s0022-2836(03)00597-7 47okncdw 0.355955 Morikawa_1992, Stork_2011, Masante_2015, Rice_1992
62 Mindich_1995 Heterologous recombination in the segmented dsRNA genome of bacteriophage Φ6 Mindich, Leonard 1995 1995-02-28 PMC N PMC7129777 10.1016/s1044-5773(05)80011-3 6f3e87yk 0.349253 Rice_1992, Stork_2011, Payne_2017, Auewarakul_2005 Tzeng_2006, Adams_2003
63 King_1985 Multiple sites of recombination within the RNA genome of foot-and-mouth disease virus King, Andrew M.Q.; McCahon, David; Saunders, Keith; Newman, John W.I.; Slade, William R. 1985 1985-11-30 PMC N 3000107.0 10.1016/0168-1702(85)90437-x 6y452g44 0.344705 Rice_1992, Auewarakul_2005
64 Di_H_2018 New insights about the regulation of Nidovirus subgenomic mRNA synthesis Di, Han; McIntyre, Ayisha A.; Brinton, Margo A. 2018 2018-04-30 PMC N PMC5987246 29475599.0 10.1016/j.virol.2018.01.026 lnp5ye11 0.340556 Lamb_1991, Rice_1992, Banerjee_2001, Krause_1987, Payne_2017 Goldberg_1991
65 Wu_C_2014 Nucleocapsid Phosphorylation and RNA Helicase DDX1 Recruitment Enables Coronavirus Transition from Discontinuous to Continuous Transcription Wu, Chia-Hsin; Chen, Pei-Jer; Yeh, Shiou-Hwei 2014 2014-10-08 None N PMC7104987 25299332.0 10.1016/j.chom.2014.09.009 9b64z84d 0.333265 Stork_2011, Pong_2011 Sasvari_2011, Bhullar_2014
66 Lili_1992 Lactate dehydrogenase-elevating virus (LDV): subgenomic mRNAs, mRNA leader and comparison of 3'-terminal sequences of two LDV isolates Lili, Kuo; Zongyu, Chen; Rowland, Raymond R.R.; Faaberg, Kay S.; Plagemann, Peter G.W. 1992 1992-04-30 PMC N PMC7133880 1604932.0 10.1016/0168-1702(92)90067-j kfmbo6gz 0.324976 Luytjes_1988, Firth_2009, Krause_1987, Jendrach_2014, Rott_1991 Godeny_1990, Goldberg_1991
67 Nagy_1999 RNA elements required for RNA recombination function as replication enhancers in vitro and in vivo in a plus‐strand RNA virus Nagy, Peter D.; Pogany, Judit; Simon, Anne E. 1999 1999-10-15 PMC N PMC1171632 10523308.0 10.1093/emboj/18.20.5653 o360an6f 0.323487 Stork_2011, Rice_1992, Banerjee_2001, Chen_2013, Lin_X_2015
68 Molenkamp_1997 Identification of a Specific Interaction between the Coronavirus Mouse Hepatitis Virus A59 Nucleocapsid Protein and Packaging Signal Molenkamp, Richard; Spaan, Willy J.M. 1997 1997-12-08 PMC N PMC7130520 9426448.0 10.1006/viro.1997.8867 14nfqusv 0.323277 Stork_2011, Rice_1992, Pong_2011 Nowak_1984
69 Binns_1985 The use of a random priming procedure to generate cDNA libraries of infectious bronchitis virus, a large RNA virus Binns, M.M.; Boursnell, M.E.G.; Foulds, I.J.; Brown, T.D.K. 1985 1985-07-31 PMC N PMC7119584 2993338.0 10.1016/0166-0934(85)90116-8 48rw5arp 0.321299 Rice_1992 Nowak_1984
70 Wu_H_2003 Common RNA replication signals exist among group 2 coronaviruses: evidence for in vivo recombination between animal and human coronavius molecules Wu, Hung-Yi; Guy, James S; Yoo, Dongwan; Vlasak, Reinhard; Urbach, Ena; Brian, David A 2003 2003-10-10 PMC N PMC7126556 14592769.0 10.1016/s0042-6822(03)00511-7 2l4xxu3v 0.317632 Ryu_W_2017, Rice_1992 Kazakov_2015
71 Bertholet_1987 Vaccinia virus produces late mRNAs by discontinuous synthesis Bertholet, Christine; Van Meir, Erwin; ten Heggeler-Bordier, Béatrice; Wittek, Riccardo 1987 1987-07-17 PMC N PMC7133321 3036368.0 10.1016/0092-8674(87)90211-x so5jooj0 0.309856 Lamb_1991, Morikawa_1992, Krause_1987, Hatfield_1990 Schwer_1987, Tzeng_2006
72 Zheng_2010 Recombinant PRRSV expressing porcine circovirus sequence reveals novel aspect of transcriptional control of porcine arterivirus Zheng, Haihong; Sun, Zhi; Zhu, Xing-Quan; Long, Jinxue; Lu, Jiaqi; Lv, Jian; Yuan, Shishan 2010 2010-03-31 PMC N PMC7114387 19951727.0 10.1016/j.virusres.2009.11.014 vvcpfsj2 0.305562 Rice_1992
73 Samal_2013 Leader Sequence Samal, S.K. 2013 2013-12-31 PMC N PMC7152451 10.1016/b978-0-12-374984-0.00850-0 dg94h2ko 0.303937 Krause_1987, Morikawa_1992, Lamb_1991, Hatfield_1990 Baric_1985