Topic 03 -- Abstracts with Biological Entities (English) - 75 Topics / Sub-Topic Model 19 - 15 Topics

cite ad title authors publish year publish time dataset abstract mentions covid pmcid pubmed id doi cord uid topic weight Similarity scispacy Similarity specter
1 Farabaugh_1993 A novel programed frameshift expresses the POL3 gene of retrotransposon Ty3 of yeast: Frameshifting without tRNA slippage Farabaugh, Philip J.; Zhao, Hong; Vimaladithan, Arunachalam 1993 1993-07-16 PMC N 8267715.0 10.1016/0092-8674(93)90297-4 431pyuzu 0.974150 Morikawa_1992, Lamb_1991, Jacks_1988, Honigman_1991
2 Napthine_2003 Prokaryotic-style frameshifting in a plant translation system: conservation of an unusual single-tRNA slippage event Napthine, Sawsan; Vidakovic, Marijana; Girnary, Roseanne; Namy, Olivier; Brierley, Ian 2003 2003-08-01 PMC N PMC169038 12881428.0 10.1093/emboj/cdg365 0m32ecnu 0.933710 Morikawa_1992, Lamb_1991, Landry_2009 Belcourt_1990, Brierley_1997, Marczinke_2000
3 Hatfield_1990 The where, what and how of ribosomal frameshifting in retroviral protein synthesis Hatfield, Dolph; Oroszlan, Stephen 1990 1990-05-31 PMC N 2193436.0 10.1016/0968-0004(90)90159-9 wqy89i4v 0.921112 Morikawa_1992, Brierley_1989, Cattaneo_1989, Lamb_1991 Jacks_1988, Li_L_2001, Brierley_1989
4 Kim_H_2017 EF-G catalyzed translocation dynamics in the presence of ribosomal frameshifting stimulatory signals Kim, Hee-Kyung; Tinoco, Ignacio 2017 2017-03-17 NONCOMM N PMC5389563 27799473.0 10.1093/nar/gkw1020 isbmmrvl 0.891548 Morikawa_1992, Huang_2018, Hatfield_1990, Brierley_1989 Powell_2011
5 Belcourt_1990 Ribosomal frameshifting in the yeast retrotransposon Ty: tRNAs induce slippage on a 7 nucleotide minimal site Belcourt, Michael F.; Farabaugh, Philip J. 1990 1990-07-27 PMC N PMC7133245 2164889.0 10.1016/0092-8674(90)90371-k xk4yuibj 0.853057 Morikawa_1992, Farabaugh_1993, Hatfield_1990, Lamb_1991 Marczinke_2000
6 Mathew_2015 The Highly Conserved Codon following the Slippery Sequence Supports −1 Frameshift Efficiency at the HIV-1 Frameshift Site Mathew, Suneeth F.; Crowe-McAuliffe, Caillan; Graves, Ryan; Cardno, Tony S.; McKinney, Cushla; Poole, Elizabeth S.; Tate, Warren P. 2015 2015-03-25 COMM-USE N PMC4373837 25807539.0 10.1371/journal.pone.0122176 10p3mth2 0.851621 Morikawa_1992, Farabaugh_1993, Hatfield_1990, Jacks_1988, Brierley_1989 Marczinke_2000, Marcheschi_2007
7 Cobucci-Ponzano_2006 The gene of an archaeal α-l-fucosidase is expressed by translational frameshifting Cobucci-Ponzano, Beatrice; Conte, Fiorella; Benelli, Dario; Londei, Paola; Flagiello, Angela; Monti, Maria; Pucci, Piero; Rossi, Mosè; Moracci, Marco 2006 2006-08-18 NONCOMM N PMC1616953 16920738.0 10.1093/nar/gkl574 69gftii4 0.847286 Morikawa_1992, Hatfield_1990, Krause_1987, Lamb_1991 Wang_2006
8 Caliskan_2014 Programmed –1 Frameshifting by Kinetic Partitioning during Impeded Translocation Caliskan, Neva; Katunin, Vladimir I.; Belardinelli, Riccardo; Peske, Frank; Rodnina, Marina V. 2014 2014-06-19 None N PMC7112342 24949973.0 10.1016/j.cell.2014.04.041 kzshcrwx 0.844696 Morikawa_1992, Hatfield_1990, Lamb_1991 Powell_2011
9 Brakier-Gingras_2012 Targeting frameshifting in the human immunodeficiency virus Brakier-Gingras, Léa; Charbonneau, Johanie; Butcher, Samuel E. 2012 2012-03-01 PMC N PMC3328590 22404160.0 10.1517/14728222.2012.665879 r0mqxu90 0.829783 Morikawa_1992, Lamb_1991, Jacks_1988, Gendron_2010 Brunelle_1999, Jacks_1988
10 Lin_Z_2012 Spacer-length dependence of programmed −1 or −2 ribosomal frameshifting on a U(6)A heptamer supports a role for messenger RNA (mRNA) tension in frameshifting Lin, Zhaoru; Gilbert, Robert J. C.; Brierley, Ian 2012 2012-06-28 NONCOMM N PMC3458567 22743270.0 10.1093/nar/gks629 kjet3e50 0.828683 Morikawa_1992, Lamb_1991, Hatfield_1990, Brierley_1989, Krause_1987 Marcheschi_2007
11 Léger_2007 The three transfer RNAs occupying the A, P and E sites on the ribosome are involved in viral programmed -1 ribosomal frameshift Léger, Mélissa; Dulude, Dominic; Steinberg, Sergey V.; Brakier-Gingras, Léa 2007 2007-08-17 NONCOMM N PMC2018615 17704133.0 10.1093/nar/gkm578 icj261ls 0.819444 Morikawa_1992, Jacks_1988, Hatfield_1990, Huang_2018 Powell_2011
12 Henderson_2006 Antisense-induced ribosomal frameshifting Henderson, Clark M.; Anderson, Christine B.; Howard, Michael T. 2006 2006-08-18 NONCOMM N PMC1616946 16920740.0 10.1093/nar/gkl531 xgwbl8em 0.808910 Morikawa_1992, Lamb_1991, Hatfield_1990, Cattaneo_1989, Jacks_1988 Li_L_2001, Jacks_1988
13 Advani_2015 Reprogramming the genetic code: the emerging role of ribosomal frameshifting in regulating cellular gene expression Advani, Vivek M.; Dinman, Jonathan D. 2015 2015-12-12 None N PMC4749135 26661048.0 10.1002/bies.201500131 rdru7ifb 0.806140 Morikawa_1992, Krause_1987 Powell_2011
14 Korniy_2019 Modulation of HIV-1 Gag/Gag-Pol frameshifting by tRNA abundance Korniy, Natalia; Goyal, Akanksha; Hoffmann, Markus; Samatova, Ekaterina; Peske, Frank; Pöhlmann, Stefan; Rodnina, Marina V 2019 2019-06-04 NONCOMM N PMC6547452 30968122.0 10.1093/nar/gkz202 onybus5o 0.800884 Morikawa_1992, Lamb_1991, Stork_2011, Jacks_1988 Jacks_1988
15 Dinman_2012 Control of gene expression by translational recoding Dinman, Jonathan D. 2012 2012-12-31 PMC N PMC7149833 22243583.0 10.1016/b978-0-12-386497-0.00004-9 ay3ayh8b 0.798304 Lamb_1991, Cattaneo_1989, Hatfield_1990, Morikawa_1992 Cobucci-Ponzano_2006, Cassan_1990, Caliskan_2015
16 Honigman_1991 cis acting RNA sequences control the gag-pol translation readthrough in murine leukemia virus Honigman, Alik; Wolf, Dana; Yaish, Shoshanit; Falk, Haya; Panet, Amos 1991 1991-07-31 PMC N PMC7131665 2053284.0 10.1016/0042-6822(91)90144-z nshwzkir 0.793766 Morikawa_1992, Lamb_1991, Jacks_1988, Hatfield_1990
17 Horsburgh_1996 Translational Recoding Induced by G-Rich mRNA Sequences That Form Unusual Structures Horsburgh, Brian C; Kollmus, Heike; Hauser, Hansjörg; Coen, Donald M 1996 1996-09-20 PMC N PMC7126349 8808630.0 10.1016/s0092-8674(00)80170-1 ck0jpp7e 0.783364 Morikawa_1992, Lamb_1991, Hatfield_1990, Jacks_1988, Brierley_1989 Gopinath_2015, Tzeng_2006
18 Marczinke_2000 The Q-base of asparaginyl-tRNA is dispensable for efficient −1 ribosomal frameshifting in eukaryotes 1 1 Edited by J. Karn Marczinke, Beate; Hagervall, Tord; Brierley, Ian 2000 2000-01-14 PMC N PMC7126154 10623518.0 10.1006/jmbi.1999.3361 ubm4au41 0.778449 Morikawa_1992, Jacks_1988, Hatfield_1990, Huang_2018, Krause_1987 Powell_2011, Brierley_1997
19 Bock_2019 Thermodynamic control of −1 programmed ribosomal frameshifting Bock, Lars V.; Caliskan, Neva; Korniy, Natalia; Peske, Frank; Rodnina, Marina V.; Grubmüller, Helmut 2019 2019-10-10 None N PMC6787027 31601802.0 10.1038/s41467-019-12648-x igzdrbfr 0.776393 Morikawa_1992, Hatfield_1990, Brierley_1989, Krause_1987 Caliskan_2015, Caliskan_2014
20 Jacks_1988 Signals for ribosomal frameshifting in the rous sarcoma virus gag-pol region Jacks, Tyler; Madhani, Hiten D.; Masiarz, Frank R.; Varmus, Harold E. 1988 1988-11-04 PMC N PMC7133365 2846182.0 10.1016/0092-8674(88)90031-1 kkkjl0le 0.759301 Morikawa_1992, Lamb_1991, Hatfield_1990, Honigman_1991 Marczinke_1998, Li_L_2001, Morikawa_1992
21 Prère_2011 The Interplay of mRNA Stimulatory Signals Required for AUU-Mediated Initiation and Programmed −1 Ribosomal Frameshifting in Decoding of Transposable Element IS911 Prère, Marie-Françoise; Canal, Isabelle; Wills, Norma M.; Atkins, John F.; Fayet, Olivier 2011 2011-04-08 PMC N PMC3133126 21478364.0 10.1128/jb.00115-11 82mgv1w6 0.749000 Morikawa_1992, Hatfield_1990, Brierley_1989, Krause_1987, Lamb_1991 Powell_2011, Marczinke_1998, Su_M_2005, Sasvari_2011
22 Lin_Y_2016 Rational design of a synthetic mammalian riboswitch as a ligand-responsive -1 ribosomal frame-shifting stimulator Lin, Ya-Hui; Chang, Kung-Yao 2016 2016-10-14 NONCOMM N PMC5062990 27521370.0 10.1093/nar/gkw718 1pou702r 0.744315 Stork_2011, Rice_1992, Morikawa_1992 Su_M_2005, Sasvari_2011
23 Cho_C_2013 Regulation of Programmed Ribosomal Frameshifting by Co-Translational Refolding RNA Hairpins Cho, Che-Pei; Lin, Szu-Chieh; Chou, Ming-Yuan; Hsu, Hsiu-Ting; Chang, Kung-Yao 2013 2013-04-29 COMM-USE N PMC3639245 23638024.0 10.1371/journal.pone.0062283 987dhnf7 0.743954 Morikawa_1992, Huang_2018, Brierley_1989 Marcheschi_2007
24 Carlson_2008 RIBOSOMAL FRAMESHIFTING IN RESPONSE TO HYPOMODIFIED tRNAs IN XENOPUS OOCYTES Carlson, Bradley A.; Lee, Byeong Jae; Hatfield, Dolph L. 2008 2008-10-01 PMC N PMC2674873 18675785.0 10.1016/j.bbrc.2008.07.118 qn2frbwo 0.743592 Morikawa_1992, Farabaugh_1993, Huang_2018, Jacks_1988, Powell_2011 Marczinke_2000, Belcourt_1990
25 Korniy_2019 Mechanisms and biomedical implications of –1 programmed ribosome frameshifting on viral and bacterial mRNAs Korniy, Natalia; Samatova, Ekaterina; Anokhina, Maria M.; Peske, Frank; Rodnina, Marina V. 2019 2019-06-20 NONCOMM N PMC6771820 31222875.0 10.1002/1873-3468.13478 bxbmcntf 0.742282 Morikawa_1992, Lamb_1991, Martínez-Salas_2008, Hatfield_1990 Powell_2011, Gopinath_2015
26 Brierley_1997 Expression of a coronavirus ribosomal frameshift signal in Escherichia coli: influence of tRNA anticodon modification on frameshifting 1 1 Edited by J. Karn Brierley, Ian; Meredith, Michayla R; Bloys, Alison J; Hagervall, Tord G 1997 1997-07-18 PMC N PMC7126968 9237903.0 10.1006/jmbi.1997.1134 kcskp2ux 0.735909 Morikawa_1992, Hatfield_1990, Farabaugh_1993, Jacks_1988, Firth_2009 Marczinke_2000, Belcourt_1990
27 Huang_2018 mRNA-Mediated Duplexes Play Dual Roles in the Regulation of Bidirectional Ribosomal Frameshifting Huang, Wan-Ping; Cho, Che-Pei; Chang, Kung-Yao 2018 2018-12-04 COMM-USE N PMC6321510 30518074.0 10.3390/ijms19123867 nnoni7qb 0.734094 Morikawa_1992, Landry_2009, Jacks_1988 Cho_C_2013, Su_M_2005
28 Wang_2006 Identification of Hepta- and Octo-Uridine stretches as sole signals for programmed +1 and −1 ribosomal frameshifting during translation of SARS-CoV ORF 3a variants Wang, Xiaoxing; Wong, Sek-Man; Liu, D. X. 2006 2006-02-25 PMC N PMC1383626 16500894.0 10.1093/nar/gkl017 6z7rt5dd 0.728836 Morikawa_1992, Hatfield_1990, Firth_2009, Krause_1987, Lamb_1991 Powell_2011, Firth_2009
29 Matsufuji_1995 Autoregulatory frameshifting in decoding mammalian ornithine decarboxylase antizyme Matsufuji, Senya; Matsufuji, Tamiko; Miyazaki, Youichi; Murakami, Yasuko; Atkins, John F; Gesteland, Raymond F; Hayashi, Shin-ichi 1995 1995-01-13 PMC N PMC7133313 7813017.0 10.1016/0092-8674(95)90450-6 8lbhu56q 0.714844 Morikawa_1992, Hatfield_1990, Huang_2018, Jacks_1988, Powell_2011 Cobucci-Ponzano_2006
30 Dinman_2004 Ribosomal frameshifting in yeast viruses Dinman, Jonathan D. 2004 2004-01-29 PMC N PMC7169727 8619310.0 10.1002/yea.320111202 mqvm9zn4 0.713260 Lamb_1991, Rice_1992, Morikawa_1992
31 Stahl_2002 Ribosome structure: revisiting the connection between translational accuracy and unconventional decoding Stahl, Guillaume; McCarty, Gregory P; Farabaugh, Philip J 2002 2002-04-01 PMC N PMC7126812 11943544.0 10.1016/s0968-0004(02)02064-9 rw2byz31 0.712102 Morikawa_1992, Hatfield_1990, Cattaneo_1989, Brierley_1989 Namy_2006, Wan_J_2018
32 Brunelle_1999 Expression of the human immunodeficiency virus frameshift signal in a bacterial cell-free system: Influence of an interaction between the ribosome and a stem-loop structure downstream from the slippery site Brunelle, Marie-Noëlle; Payant, Catherine; Brakier-Gingras, Léa; Lemay, Guy 1999 1999-12-15 PMC N PMC148779 10572179.0 10.1093/nar/27.24.4783 6m4qrt3m 0.698167 Morikawa_1992, Gendron_2010, Jacks_1988, Krause_1987, Hatfield_1990 Nowak_1984
33 Theis_2008 KnotInFrame: prediction of −1 ribosomal frameshift events Theis, Corinna; Reeder, Jens; Giegerich, Robert 2008 2008-09-27 NONCOMM N PMC2566878 18820303.0 10.1093/nar/gkn578 4ov0j2u3 0.693435 Morikawa_1992, Hatfield_1990, Brierley_1989, Lamb_1991, Price_2019 Su_M_2005, Caliskan_2015, Giedroc_2009
34 Magliery_2001 Expanding the genetic code: selection of efficient suppressors of four-base codons and identification of “shifty” four-base codons with a library approach in Escherichia coli 1 1 Edited by M. Gottesman Magliery, Thomas J; Anderson, J.Christopher; Schultz, Peter G 2001 2001-03-30 PMC N PMC7125544 11273699.0 10.1006/jmbi.2001.4518 uctd2mnd 0.686738 Morikawa_1992, Lamb_1991, Firth_2009 Belcourt_1990
35 Morikawa_1992 Identification and analysis of the gag-pol ribosomal frameshift site of feline immunodeficiency virus Morikawa, Shigeru; Bishop, David H.L. 1992 1992-02-29 PMC N PMC7131530 1310175.0 10.1016/0042-6822(92)90004-9 7fx1ghd3 0.680220 Hatfield_1990, Lamb_1991, Brierley_1989, Jacks_1988 Li_L_2001, Jacks_1988, Marczinke_1998, Powell_2011
36 Moon_2007 FSDB: A frameshift signal database Moon, Sanghoon; Byun, Yanga; Han, Kyungsook 2007 2007-08-31 PMC N 17631420.0 10.1016/j.compbiolchem.2007.05.004 4cjqh2qv 0.679965 Morikawa_1992, Lamb_1991, Hatfield_1990, Moon_2006 Henderson_2006, Brierley_2009
37 Rakauskaitė_2011 A rapid, inexpensive yeast-based dual-fluorescence assay of programmed—1 ribosomal frameshifting for high-throughput screening Rakauskaitė, Rasa; Liao, Pei-Yu; Rhodin, Michael H. J.; Lee, Kelvin; Dinman, Jonathan D. 2011 2011-05-20 NONCOMM N PMC3152369 21602263.0 10.1093/nar/gkr382 mib0dy32 0.679646 Rice_1992 Sasvari_2011
38 Caliskan_2015 Changed in translation: mRNA recoding by −1 programmed ribosomal frameshifting Caliskan, Neva; Peske, Frank; Rodnina, Marina V. 2015 2015-05-31 PMC N PMC7126180 25850333.0 10.1016/j.tibs.2015.03.006 58cat4xj 0.678893 Lamb_1991 Giedroc_2009
39 Brierley_1992 Mutational analysis of the “slippery-sequence” component of a coronavirus ribosomal frameshifting signal Brierley, Ian; Jenner, Alison J.; Inglis, Stephen C. 1992 1992-09-20 PMC N PMC7125858 1404364.0 10.1016/0022-2836(92)90901-u oir3rlb7 0.678079 Morikawa_1992, Hatfield_1990, Brierley_1989, Krause_1987, Firth_2009 Brierley_1991, Li_L_2001, Powell_2011
40 Csibra_2014 Modulation of Stop Codon Read-Through Efficiency and Its Effect on the Replication of Murine Leukemia Virus Csibra, Eszter; Brierley, Ian; Irigoyen, Nerea 2014 2014-09-23 COMM-USE N PMC4178896 24991001.0 10.1128/jvi.00898-14 z04xb7uv 0.677901 Rice_1992, Lamb_1991, Stork_2011, Morikawa_1992 Masante_2015
41 Hu_H_2016 A general strategy to inhibiting viral −1 frameshifting based on upstream attenuation duplex formation Hu, Hao-Teng; Cho, Che-Pei; Lin, Ya-Hui; Chang, Kung-Yao 2016 2016-01-08 None N PMC4705660 26612863.0 10.1093/nar/gkv1307 1u10lpx2 0.677298 Morikawa_1992, Rice_1992, Stork_2011, Lamb_1991 Su_M_2005, Fajardo_2012
42 Tholstrup_2011 mRNA pseudoknot structures can act as ribosomal roadblocks Tholstrup, Jesper; Oddershede, Lene B.; Sørensen, Michael A. 2011 2011-09-08 NONCOMM N PMC3245918 21908395.0 10.1093/nar/gkr686 e18licyc 0.675168 Morikawa_1992, Lamb_1991, Hatfield_1990, Brierley_1989, Krause_1987 Brierley_2009
43 Brierley_2009 Pseudoknot-Dependent Programmed —1 Ribosomal Frameshifting: Structures, Mechanisms and Models Brierley, Ian; Gilbert, Robert J.C.; Pennell, Simon 2009 2009-07-21 PMC N PMC7119991 10.1007/978-0-387-89382-2_7 ly55753z 0.663292 Morikawa_1992, Lamb_1991, Hatfield_1990, Brierley_1989 Namy_2006
44 Liao_2010 The many paths to frameshifting: kinetic modelling and analysis of the effects of different elongation steps on programmed –1 ribosomal frameshifting Liao, Pei-Yu; Choi, Yong Seok; Dinman, Jonathan D.; Lee, Kelvin H. 2010 2010-09-07 NONCOMM N PMC3017607 20823091.0 10.1093/nar/gkq761 wwq0sd2r 0.659445 Lamb_1991, Morikawa_1992, Rice_1992, Hatfield_1990, Jacks_1988 Powell_2011, Wang_2006, Marczinke_1998, Sasvari_2011
45 Garcia_2018 Accounting for Programmed Ribosomal Frameshifting in the Computation of Codon Usage Bias Indices Garcia, Victor; Zoller, Stefan; Anisimova, Maria 2018 2018-08-23 COMM-USE N PMC6169388 30111621.0 10.1534/g3.118.200185 u99o8mde 0.657205 Morikawa_1992, Plant_2013 Cassan_1990
46 Türkel_2011 Glucose signalling pathway controls the programmed ribosomal frameshift efficiency in retroviral‐like element Ty3 in Saccharomyces cerevisiae Türkel, Sezai; Kaplan, Güliz; Farabaugh, Philip J. 2011 2011-10-12 PMC N PMC7169698 21989811.0 10.1002/yea.1906 il66v434 0.653267 Morikawa_1992
47 Moran_2008 The Mechanics of Translocation: A Molecular “Spring-and-Ratchet” System Moran, Stephen J.; Flanagan, John F.; Namy, Olivier; Stuart, David I.; Brierley, Ian; Gilbert, Robert J.C. 2008 2008-05-07 PMC N PMC7119126 18462671.0 10.1016/j.str.2008.04.001 5exkly0l 0.652882 Morikawa_1992 Olia_2008, Flanagan_2010, Caliskan_2014
48 Ivanov_2004 Identification of a New Antizyme mRNA +1 Frameshifting Stimulatory Pseudoknot in a Subset of Diverse Invertebrates and its Apparent Absence in Intermediate Species Ivanov, Ivaylo P; Anderson, Christine B; Gesteland, Raymond F; Atkins, John F 2004 2004-06-04 PMC N PMC7125782 15147837.0 10.1016/j.jmb.2004.03.082 gsqmkxjx 0.648767 Lamb_1991, Morikawa_1992, Gorbalenya_1988, Krause_1987 Gopinath_2015
49 Sung_2003 Prokaryotic and eukaryotic translational machineries respond differently to the frameshifting RNA signal from plant or animal virus Sung, Deukyong; Kang, Hunseung 2003 2003-04-30 PMC N PMC7127617 12686425.0 10.1016/s0168-1702(03)00042-x kuxvnq6d 0.644028 Stork_2011, Morikawa_1992, Rice_1992 Li_Z_2009, Marczinke_1998
50 Sharma_2014 Analysis of tetra- and hepta-nucleotides motifs promoting -1 ribosomal frameshifting in Escherichia coli Sharma, Virag; Prère, Marie-Françoise; Canal, Isabelle; Firth, Andrew E.; Atkins, John F.; Baranov, Pavel V.; Fayet, Olivier 2014 2014-07-01 COMM-USE N PMC4066793 24875478.0 10.1093/nar/gku386 a3y1rfas 0.637323 Morikawa_1992, Hatfield_1990, Brierley_1989, Firth_2009, Krause_1987 Li_L_2001, Wang_2006, Marczinke_1998
51 Tükenmez_2015 The role of wobble uridine modifications in +1 translational frameshifting in eukaryotes Tükenmez, Hasan; Xu, Hao; Esberg, Anders; Byström, Anders S. 2015 2015-10-30 COMM-USE N PMC4627075 26283182.0 10.1093/nar/gkv832 7c37elh6 0.631889 Morikawa_1992, Hatfield_1990, Jacks_1988, Krause_1987, Powell_2011 Marczinke_2000
52 Fu_C_1994 A ribosomal frameshifting error during translation of the argl mRNA of Escherichla coli Fu, Changwei; Parker, Jack 1994 1994-01-01 PMC N PMC7087753 7515462.0 10.1007/bf00280474 rr6chvsh 0.629719 Morikawa_1992, Hatfield_1990, Farabaugh_1993, Jacks_1988 Cobucci-Ponzano_2006
53 Weiss-Brummer_1995 Mutation of a highly conserved base in the yeast mitochondrial 21S rRNA restricts ribosomal frameshifting Weiss-Brummer, Brigitte; Zollner, Alfred; Haid, Albert; Thomnson, Shahla 1995 1995-01-01 PMC N PMC7087996 7544431.0 10.1007/bf02190802 r70iuoq0 0.623106 Morikawa_1992, Krause_1987, Hatfield_1990, Jacks_1988 Sakai_1991, Marczinke_2000, Powell_2011
54 Cassan_1990 Expression vectors for quatitating in vivo translational ambiguity: Their potential use to analyse frameshifting at the HIV gag-pol junction Cassan, M.; Berteaux, V.; Angrand, P.-O.; Rousset, J.-P. 1990 1990-12-31 PMC N PMC7135639 2087598.0 10.1016/0923-2516(90)90033-f 7elri6u3 0.620126 Morikawa_1992, Lamb_1991, Gendron_2010, Hatfield_1990 Satyanarayana_2003
55 Khan_2019 Contesting the evidence for -1 frameshifting in immune-functioning C-C chemokine receptor 5 (CCR5) - the HIV-1 co-receptor Yousuf A Khan; Gary Loughran; John F. Atkins 2019 2019-01-08 BioRxiv N 10.1101/513333 yvha7wzz 0.619348 Morikawa_1992, Lamb_1991, Hatfield_1990, Jacks_1988 Brunelle_1999, Powell_2011
56 Dinman_2012 Mechanisms and Implications of Programmed Translational Frameshifting Dinman, Jonathan D. 2012 2012-06-19 None N PMC3419312 22715123.0 10.1002/wrna.1126 pil78xd3 0.609642 Lamb_1991, Morikawa_1992 Henderson_2006
57 Hatfield_1989 Chromatographic analysis of the aminoacyl-trnas which are required for translation of codons at and around the ribosomal frameshift sites of HIV, HTLV-1, and BLV Hatfield, Dolph; Feng, Ya-Xiong; Lee, Byeong J.; Rein, Alan; Levin, Judith G.; Oroszlan, Stephen 1989 1989-12-31 PMC N 2556852.0 10.1016/0042-6822(89)90589-8 muf79zhi 0.605183 Morikawa_1992, Jacks_1988, Hatfield_1990, Farabaugh_1993, Firth_2009 Marczinke_2000
58 Mouzakis_2012 HIV-1 frameshift efficiency is primarily determined by the stability of base pairs positioned at the mRNA entrance channel of the ribosome Mouzakis, Kathryn D.; Lang, Andrew L.; Vander Meulen, Kirk A.; Easterday, Preston D.; Butcher, Samuel E. 2012 2012-12-15 NONCOMM N PMC3561942 23248007.0 10.1093/nar/gks1254 ix8du1er 0.601140 Morikawa_1992, Brierley_1989, Hatfield_1990, Jacks_1988, Krause_1987 Marczinke_1998, Marcheschi_2007, Powell_2011
59 Flanagan_2010 Direct Observation of Distinct A/P Hybrid-State tRNAs in Translocating Ribosomes Flanagan, John F.; Namy, Olivier; Brierley, Ian; Gilbert, Robert J.C. 2010 2010-02-10 None N PMC4340587 20159470.0 10.1016/j.str.2009.12.007 bddiy1ea 0.599304 Krause_1987, Gorbalenya_1988
60 Napthine_2017 Protein-directed ribosomal frameshifting temporally regulates gene expression Napthine, Sawsan; Ling, Roger; Finch, Leanne K.; Jones, Joshua D.; Bell, Susanne; Brierley, Ian; Firth, Andrew E. 2017 2017-06-08 COMM-USE N PMC5472766 28593994.0 10.1038/ncomms15582 50lhd5yc 0.596848 Lamb_1991, Morikawa_1992 Henderson_2006
61 Namy_2006 A mechanical explanation of RNA pseudoknot function in programmed ribosomal frameshifting Namy, Olivier; Moran, Stephen J.; Stuart, David I.; Gilbert, Robert J. C.; Brierley, Ian 2006 2006-01-01 None N PMC7094908 16688178.0 10.1038/nature04735 i3yiuai7 0.595912 Morikawa_1992, Hatfield_1990, Brierley_1989, Lamb_1991 Giedroc_2009, Brierley_2009
62 Huang_2013 A Genome-Wide Analysis of RNA Pseudoknots That Stimulate Efficient −1 Ribosomal Frameshifting or Readthrough in Animal Viruses Huang, Xiaolan; Cheng, Qiang; Du, Zhihua 2013 2013-11-04 COMM-USE N PMC3835772 24298557.0 10.1155/2013/984028 c57impca 0.584920 Morikawa_1992, Lamb_1991, Hatfield_1990, Brierley_1989, Martínez-Salas_2008
63 Kang_1998 Direct structural evidence for formation of a stem-loop structure involved in ribosomal frameshifting in human immunodeficiency virus type 1 1 Kumho Life and Environmental Science Laboratory Publication No. 8. 1 Kang, Hunseung 1998 1998-04-01 PMC N PMC7148724 9545540.0 10.1016/s0167-4781(98)00004-9 ppb9k3zu 0.575363 Morikawa_1992, Brierley_1989, Krause_1987, Firth_2009 Marczinke_1998, Marcheschi_2007
64 Jacobs_2006 Identification of functional, endogenous programmed −1 ribosomal frameshift signals in the genome of Saccharomyces cerevisiae Jacobs, Jonathan L.; Belew, Ashton T.; Rakauskaite, Rasa; Dinman, Jonathan D. 2006 2006-12-07 NONCOMM N PMC1802563 17158156.0 10.1093/nar/gkl1033 n3ouk7wa 0.574241 Morikawa_1992, Krause_1987, Lamb_1991, Price_2019
65 Kelly_2020 Structural and functional conservation of the programmed -1 ribosomal frameshift signal of SARS-CoV-2 Jamie A. Kelly; Jonathan D. Dinman 2020 2020-03-15 BioRxiv Y 10.1101/2020.03.13.991083 62izhj8d 0.565467 Morikawa_1992
66 Vimaladithan_1998 Identification and Analysis of Frameshift Sites Vimaladithan, Arunachalam; Farabaugh, Philip J. 1998 1998-01-01 PMC N PMC7120883 9770684.0 10.1385/0-89603-397-x:399 se5s5tvw 0.565162 Lamb_1991, Morikawa_1992, Krause_1987, Hatfield_1990, Rodnina_2020 Wang_2006, Powell_2011
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69 Dunkle_2015 Mechanisms of mRNA frame maintenance and its subversion during translation of the genetic code Dunkle, Jack A.; Dunham, Christine M. 2015 2015-07-01 PMC N PMC4458409 25708857.0 10.1016/j.biochi.2015.02.007 0v8yd5qj 0.562701 Lamb_1991, Morikawa_1992, Cattaneo_1989, Rodnina_2020 Powell_2011, Gopinath_2015
70 Finch_2015 Characterization of Ribosomal Frameshifting in Theiler's Murine Encephalomyelitis Virus Finch, Leanne K.; Ling, Roger; Napthine, Sawsan; Olspert, Allan; Michiels, Thomas; Lardinois, Cécile; Bell, Susanne; Loughran, Gary; Brierley, Ian; Firth, Andrew E. 2015 2015-06-10 COMM-USE N PMC4524249 26063423.0 10.1128/jvi.01043-15 azzgygzk 0.560140 Morikawa_1992, Lamb_1991, Rice_1992, Stork_2011, Jacks_1988 Li_L_2001, DEN_BOON_1995
71 Atkins_2016 Ribosomal frameshifting and transcriptional slippage: From genetic steganography and cryptography to adventitious use Atkins, John F.; Loughran, Gary; Bhatt, Pramod R.; Firth, Andrew E.; Baranov, Pavel V. 2016 2016-09-06 COMM-USE N PMC5009743 27436286.0 10.1093/nar/gkw530 0s8huajd 0.548034 Morikawa_1992, Lamb_1991, Hatfield_1990, Krause_1987, Brierley_1989 Giedroc_2009
72 Lewis_1995 An astrovirus frameshift signal induces ribosomal frameshifting in vitro Lewis, T. L.; Matsui, S. M. 1995 1995-01-01 PMC N PMC7087256 7611883.0 10.1007/bf01315421 ti3jy64e 0.546009 Morikawa_1992, Lamb_1991, Luytjes_1988, Vennema_1991 Li_L_2001, Leibowitz_1988, Tzeng_2006
73 Giedroc_2009 Frameshifting RNA pseudoknots: Structure and mechanism Giedroc, David P.; Cornish, Peter V. 2009 2009-02-28 None N PMC2670756 18621088.0 10.1016/j.virusres.2008.06.008 rlnb674e 0.545154 Morikawa_1992, Martínez-Salas_2008, Hatfield_1990, Stork_2011 Marcheschi_2007
74 Gao_F_2016 Multiple Cis-acting elements modulate programmed -1 ribosomal frameshifting in Pea enation mosaic virus Gao, Feng; Simon, Anne E. 2016 2016-01-29 COMM-USE N PMC4737148 26578603.0 10.1093/nar/gkv1241 mncz34kh 0.543660 Morikawa_1992, Hatfield_1990, Brierley_1989, Jacks_1988, Krause_1987 Powell_2011, Marczinke_1998
75 Ketteler_2012 On programmed ribosomal frameshifting: the alternative proteomes Ketteler, Robin 2012 2012-11-19 COMM-USE N PMC3500957 23181069.0 10.3389/fgene.2012.00242 4wfhuvww 0.537678 Lamb_1991, Morikawa_1992, Plant_2013, Price_2019 Caliskan_2015, Cobucci-Ponzano_2006, Brierley_2009
76 Moon_2006 Prediction of Ribosomal -1 Frameshifts in the Escherichia coli K12 Genome Moon, Sanghoon; Byun, Yanga; Han, Kyungsook 2006 2006-01-01 PMC N PMC7122894 10.1007/11816102_65 czjjnlkf 0.536855 Morikawa_1992, Lamb_1991, Hatfield_1990, Cattaneo_1989 Li_L_2001
77 Manktelow_2005 Characterization of the frameshift signal of Edr, a mammalian example of programmed −1 ribosomal frameshifting Manktelow, Emily; Shigemoto, Kazuhiro; Brierley, Ian 2005 2005-03-14 PMC N PMC1065257 15767280.0 10.1093/nar/gki299 mcfmxqp2 0.535679 Morikawa_1992, Krause_1987, Firth_2009 Marczinke_1998, Li_L_2001, Wang_2006, Powell_2011
78 Matsumoto_2018 Small synthetic molecule-stabilized RNA pseudoknot as an activator for –1 ribosomal frameshifting Matsumoto, Saki; Caliskan, Neva; Rodnina, Marina V; Murata, Asako; Nakatani, Kazuhiko 2018 2018-09-19 None N PMC6144811 30085309.0 10.1093/nar/gky689 id4rgjnk 0.531961 Morikawa_1992, Stork_2011, Krause_1987, Atkins_1999 Okamoto_2008
79 Gendron_2007 The presence of the TAR RNA structure alters the programmed -1 ribosomal frameshift efficiency of the human immunodeficiency virus type 1 (HIV-1) by modifying the rate of translation initiation Gendron, Karine; Charbonneau, Johanie; Dulude, Dominic; Heveker, Nikolaus; Ferbeyre, Gerardo; Brakier-Gingras, Léa 2007 2007-11-05 NONCOMM N PMC2248755 17984074.0 10.1093/nar/gkm906 ipwm9uob 0.530947 Gendron_2010, Morikawa_1992 Gendron_2010, Brunelle_1999
80 Giedroc_2000 Structure, stability and function of RNA pseudoknots involved in stimulating ribosomal frameshifting 1 1 Edited by D. E. Draper Giedroc, David P; Theimer, Carla A; Nixon, Paul L 2000 2000-04-28 PMC N PMC7126452 10764589.0 10.1006/jmbi.2000.3668 jbcnz0of 0.530100 Morikawa_1992, Lamb_1991, Martínez-Salas_2008, Brierley_1989, Hatfield_1990 Marczinke_1998
81 Marczinke_1998 Secondary structure and mutational analysis of the ribosomal frameshift signal of rous sarcoma virus 1 1 Edited by D. E. Draper Marczinke, Beate; Fisher, Rosamond; Vidakovic, Marijana; Bloys, Alison J; Brierley, Ian 1998 1998-11-27 PMC N PMC7126186 9813113.0 10.1006/jmbi.1998.2186 9rs5n1ik 0.528848 Morikawa_1992, Hatfield_1990, Brierley_1989, Jacks_1988, Stork_2011 Jacks_1988, Powell_2011, Marcheschi_2007
82 Xie_P_2016 Model of the pathway of −1 frameshifting: Long pausing Xie, Ping 2016 2016-01-29 None N PMC5600365 28955849.0 10.1016/j.bbrep.2016.01.017 ajfgwe3o 0.526452 Morikawa_1992, Krause_1987, Hatfield_1990, Huang_2018, Brierley_1989
83 Li_L_2001 Structural Analysis of the −1 Ribosomal Frameshift Elements in Giardiavirus mRNA Li, Lei; Wang, Alice L.; Wang, Ching C. 2001 2001-11-15 None N PMC114643 11602703.0 10.1128/jvi.75.22.10612-10622.2001 ixslsd5s 0.523876 Morikawa_1992, Hatfield_1990, Krause_1987, Brierley_1989, Jacks_1988 Goldberg_1991, Firth_2009
84 Tamm_2009 Stem-loop structure of Cocksfoot mottle virus RNA is indispensable for programmed −1 ribosomal frameshifting Tamm, Tiina; Suurväli, Jaanus; Lucchesi, Jimmy; Olspert, Allan; Truve, Erkki 2009 2009-12-31 PMC N PMC7114514 19748532.0 10.1016/j.virusres.2009.09.002 7t9e6xgu 0.523025 Morikawa_1992, Chen_2013, Stork_2011, Jacks_1988, Rice_1992 Marczinke_1998
85 Firth_2012 Ribosomal frameshifting used in influenza A virus expression occurs within the sequence UCC_UUU_CGU and is in the +1 direction Firth, A. E.; Jagger, B. W.; Wise, H. M.; Nelson, C. C.; Parsawar, K.; Wills, N. M.; Napthine, S.; Taubenberger, J. K.; Digard, P.; Atkins, J. F. 2012 2012-10-23 COMM-USE N PMC3498833 23155484.0 10.1098/rsob.120109 mq414yby 0.520046 Rice_1992, Lamb_1991, Auewarakul_2005 Li_L_2001, Tzeng_2006
86 Yu_C_2010 Stimulation of ribosomal frameshifting by antisense LNA Yu, Chien-Hung; Noteborn, Mathieu H. M.; Olsthoorn, René C. L. 2010 2010-08-06 NONCOMM N PMC3001050 20693527.0 10.1093/nar/gkq650 pc4x5e24 0.519262 Morikawa_1992, Stork_2011, Brierley_1989, Krause_1987 Marcheschi_2007
87 Su_M_2005 An atypical RNA pseudoknot stimulator and an upstream attenuation signal for −1 ribosomal frameshifting of SARS coronavirus Su, Mei-Chi; Chang, Chung-Te; Chu, Chiu-Hui; Tsai, Ching-Hsiu; Chang, Kung-Yao 2005 2005-07-29 PMC N PMC1182165 16055920.0 10.1093/nar/gki731 7ots8npg 0.518816 Morikawa_1992, Brierley_1989, Stork_2011, Jacks_1988, Pong_2011 Marczinke_1998, Li_L_2001
88 Wan_J_2018 A Coding Sequence-Embedded Principle Governs Translational Reading Frame Fidelity Wan, Ji; Gao, Xiangwei; Mao, Yuanhui; Zhang, Xingqian; Qian, Shu-Bing 2018 2018-09-20 COMM-USE N PMC6750092 31549036.0 10.1155/2018/7089174 6uv9nu65 0.518816 Morikawa_1992, Hatfield_1990, Lamb_1991, Cattaneo_1989 Namy_2006
89 Baril_2003 The Frameshift Stimulatory Signal of Human Immunodeficiency Virus Type 1 Group O is a Pseudoknot Baril, Martin; Dulude, Dominic; Steinberg, Sergey V; Brakier-Gingras, Léa 2003 2003-08-15 PMC N PMC7127721 12899829.0 10.1016/s0022-2836(03)00784-8 uftl1mx5 0.512123 Morikawa_1992, Jacks_1988, Hatfield_1990, Brierley_1989, Krause_1987 Marczinke_1998, Marcheschi_2007, Su_M_2005
90 Yu_C_2013 Stimulation of ribosomal frameshifting by RNA G-quadruplex structures Yu, Chien-Hung; Teulade-Fichou, Marie-Paule; Olsthoorn, René C. L. 2013 2013-10-30 COMM-USE N PMC3919603 24178029.0 10.1093/nar/gkt1022 v6lycc7k 0.505516 Morikawa_1992, Krause_1987, Stork_2011, Masante_2015 Marcheschi_2007, Gopinath_2015
91 Rodnina_2020 Translational recoding: canonical translation mechanisms reinterpreted Rodnina, Marina V; Korniy, Natalia; Klimova, Mariia; Karki, Prajwal; Peng, Bee-Zen; Senyushkina, Tamara; Belardinelli, Riccardo; Maracci, Cristina; Wohlgemuth, Ingo; Samatova, Ekaterina; Peske, Frank 2020 2020-02-20 NONCOMM N PMC7026636 31511883.0 10.1093/nar/gkz783 il9mz5na 0.499592 Morikawa_1992, Lamb_1991, Hatfield_1990, Kozak_1994 Caliskan_2015, Caliskan_2014
92 Bekaert_2005 An Extended Signal Involved in Eukaryotic −1 Frameshifting Operates through Modification of the E Site tRNA Bekaert, Michaël; Rousset, Jean-Pierre 2005 2005-01-07 PMC N PMC7129640 15629717.0 10.1016/j.molcel.2004.12.009 yf8fvx7k 0.493323 Morikawa_1992, Hatfield_1990, Krause_1987, Lamb_1991, Gorbalenya_1988 Li_L_2001, Gopinath_2015
93 Mikl_2018 High-throughput interrogation of programmed ribosomal frameshifting in human cells Martin Mikl; Yitzhak Pilpel; Eran Segal 2018 2018-11-14 BioRxiv N 10.1101/469692 5zjnzsik 0.488351 Lamb_1991, Rice_1992, Morikawa_1992
94 Bidou_2010 Translational errors: from yeast to new therapeutic targets Bidou, Laure; Rousset, Jean-Pierre; Namy, Olivier 2010 2010-12-01 PMC N PMC7110152 20955199.0 10.1111/j.1567-1364.2010.00684.x y6rye3bp 0.486961 Cassan_1990
95 Sekine_1992 DNA sequences required for translational frameshifting in production of the transposase encoded by IS 1 Sekine, Yasuhiko; Ohtsubo, Eiichi 1992 1992-01-01 PMC N PMC7088269 1334530.0 10.1007/bf00279377 f0smw5j0 0.486735 Morikawa_1992, Hatfield_1990, Jacks_1988, Brierley_1989 Sekine_1992, Li_L_2001
96 Plant_2005 A Three-Stemmed mRNA Pseudoknot in the SARS Coronavirus Frameshift Signal Plant, Ewan P; Pérez-Alvarado, Gabriela C; Jacobs, Jonathan L; Mukhopadhyay, Bani; Hennig, Mirko; Dinman, Jonathan D 2005 2005-05-17 COMM-USE N PMC1110908 15884978.0 10.1371/journal.pbio.0030172 a22s8xyz 0.478387 Morikawa_1992, Rice_1992, Stork_2011, Lamb_1991, Gorbalenya_1988
97 Miller_2009 Ribosomal Frameshifting in Decoding Plant Viral RNAs Miller, W. Allen; Giedroc, David P. 2009 2009-07-21 PMC N PMC7122378 10.1007/978-0-387-89382-2_9 1pwa6zsk 0.476750 Morikawa_1992, Lamb_1991, Hatfield_1990, Jacks_1988, Brierley_1989 Li_L_2001, Marcheschi_2007
98 Baranov_2005 Programmed ribosomal frameshifting in decoding the SARS-CoV genome Baranov, Pavel V.; Henderson, Clark M.; Anderson, Christine B.; Gesteland, Raymond F.; Atkins, John F.; Howard, Michael T. 2005 2005-02-20 PMC N PMC7111862 15680415.0 10.1016/j.virol.2004.11.038 65bkj1s4 0.470954 Morikawa_1992, Brierley_1989, Jacks_1988, Lamb_1991, Stork_2011 Li_L_2001, Marczinke_1998, Marcheschi_2007
99 Napthine_2016 A novel role for poly(C) binding proteins in programmed ribosomal frameshifting Napthine, Sawsan; Treffers, Emmely E.; Bell, Susanne; Goodfellow, Ian; Fang, Ying; Firth, Andrew E.; Snijder, Eric J.; Brierley, Ian 2016 2016-07-08 None N PMC4937337 27257056.0 10.1093/nar/gkw480 rdgm0q7m 0.459304 Stork_2011, Morikawa_1992, Pong_2011
100 Brierley_2006 Programmed ribosomal frameshifting in HIV-1 and the SARS–CoV Brierley, Ian; Dos Ramos, Francisco J. 2006 2006-07-31 PMC N PMC7114087 16310880.0 10.1016/j.virusres.2005.10.008 2wuc5yiu 0.457344 Rice_1992, Ryu_W_2017
101 Visscher_2016 Chapter Two −1 Programmed Ribosomal Frameshifting as a Force-Dependent Process Visscher, Koen 2016 2016-12-31 PMC N PMC7102820 26970190.0 10.1016/bs.pmbts.2015.11.003 cwuls6xs 0.450498 Morikawa_1992, Lamb_1991, Cao_S_2008, Huang_2018 Caliskan_2015, Bock_2019
102 Brierley_2003 V, 2.Ribosomal frameshifting in astroviruses Brierley, Ian; Vidakovic, Marijana 2003 2003-12-31 PMC N PMC7133818 10.1016/s0168-7069(03)09035-9 wjcp0asf 0.449069
103 Plant_2013 Altering SARS Coronavirus Frameshift Efficiency Affects Genomic and Subgenomic RNA Production Plant, Ewan P.; Sims, Amy C.; Baric, Ralph S.; Dinman, Jonathan D.; Taylor, Deborah R. 2013 2013-01-18 COMM-USE N PMC3564121 23334702.0 10.3390/v5010279 zwl0safn 0.448835 Morikawa_1992, Auewarakul_2005, Rice_1992, Lamb_1991 Tzeng_2006
104 Chen_2013 Dynamics of translation by single ribosomes through mRNA secondary structures Chen, Chunlai; Zhang, Haibo; Broitman, Steven L.; Reiche, Michael; Farrell, Ian; Cooperman, Barry S.; Goldman, Yale E. 2013 2013-03-31 None N PMC3648610 23542154.0 10.1038/nsmb.2544 l600aeuo 0.438662 Morikawa_1992, Huang_2018, Krause_1987 Balakin_1990
105 Cao_S_2008 Predicting ribosomal frameshifting efficiency Cao, Song; Chen, Shi-Jie 2008 2008-03-11 PMC N PMC2442619 18367782.0 10.1088/1478-3975/5/1/016002 5xqnpur7 0.408580 Morikawa_1992, Brierley_1989, Hatfield_1990, Huang_2018 Li_L_2001, Giedroc_2009
106 Harrington_2019 Cotranslational Folding Stimulates Programmed Ribosomal Frameshifting in the Alphavirus Structural Polyprotein Haley R. Harrington; Matthew H. Zimmer; Laura M. Chamness; Veronica Nash; Wesley D. Penn; Thomas F. Miller; Suchetana Mukhopadhyay; Jonathan P. Schlebach 2019 2019-10-02 BioRxiv N 10.1101/790444 4ju3x2bf 0.403222 Stork_2011, Morikawa_1992
107 Kim_J_2007 A pseudoknot improves selection efficiency in ribosome display Kim, Jong-Myung; Shin, Ho-Joon; Kim, Kyongmin; Lee, Myung-Shin 2007 2007-04-17 PMC N PMC7090622 17827535.0 10.1007/s12033-007-0017-1 o7mt8hr6 0.402172 Stork_2011, Pong_2011, Morikawa_1992 Tzeng_2006
108 Dinman_1998 Translating old drugs into new treatments: ribosomal frameshifting as a target for antiviral agents Dinman, Jonathan D; Ruiz-Echevarria, Maria J; Peltz, Stuart W 1998 1998-04-01 PMC N PMC7127214 9586242.0 10.1016/s0167-7799(97)01167-0 wqi4z0ne 0.400009 Rice_1992, Stork_2011
109 Kolla_2000 Synthesis of a bacteriophage MB78 late protein by novel ribosomal frameshifting Kolla, Venkatadri; Chakravorty, Maharani; Pandey, Bindu; Srinivasula, Srinivasa M; Mukherjee, Annapurna; Litwack, Gerald 2000 2000-08-22 PMC N 10974552.0 10.1016/s0378-1119(00)00264-x gmgbus9i 0.398158 Morikawa_1992, Krause_1987, Rice_1992
110 Belew_2010 Endogenous ribosomal frameshift signals operate as mRNA destabilizing elements through at least two molecular pathways in yeast Belew, Ashton T.; Advani, Vivek M.; Dinman, Jonathan D. 2010 2010-11-24 NONCOMM N PMC3074144 21109528.0 10.1093/nar/gkq1220 cbzd8ybv 0.395177 Sarnowska_2007
111 Xiong_1993 Synthesis of the Putative Red Clover Necrotic Mosaic Virus RNA Polymerase by Ribosomal Frameshifting in Vitro Xiong, Z.; Kim, K.H.; Kendall, T.L.; Lommel, S.A. 1993 1993-03-31 PMC N 8438566.0 10.1006/viro.1993.1117 mtuxocrd 0.394917 Lamb_1991, Morikawa_1992, Stork_2011, Wurch_1991 White_1991, Okamoto_2008, Nowak_1984
112 Wen_J_2008 Following translation by single ribosomes one codon at a time Wen, Jin-Der; Lancaster, Laura; Hodges, Courtney; Zeri, Ana-Carolina; Yoshimura, Shige H.; Noller, Harry F.; Bustamante, Carlos; Tinoco, Ignacio 2008 2008-03-09 PMC N PMC2556548 18327250.0 10.1038/nature06716 iy1oyiqm 0.391931 Hatfield_1990, Krause_1987, Morikawa_1992, Brierley_1989 Chen_2013
113 Chang_2012 Revealing −1 Programmed Ribosomal Frameshifting Mechanisms by Single-Molecule Techniques and Computational Methods Chang, Kai-Chun 2012 2012-04-01 COMM-USE N PMC3321566 22545064.0 10.1155/2012/569870 ne7rvqex 0.388931 Martínez-Salas_2008, Wu_B_2009, Stork_2011 Zhong_2016, Marcheschi_2007
114 Ahn_D_2011 Interference of ribosomal frameshifting by antisense peptide nucleic acids suppresses SARS coronavirus replication Ahn, Dae-Gyun; Lee, Wooseong; Choi, Jin-Kyu; Kim, Seong-Jun; Plant, Ewan P.; Almazán, Fernando; Taylor, Deborah R.; Enjuanes, Luis; Oh, Jong-Won 2011 2011-07-31 None N PMC4728714 21549154.0 10.1016/j.antiviral.2011.04.009 9yh8y9ac 0.383598 Stork_2011, Rice_1992, Pong_2011 Bhullar_2014, Tzeng_2006
115 Lyon_2018 Live-cell single RNA imaging reveals bursts of translational frameshifting Kenneth Lyon; Luis U. Aguilera; Tatsuya Morisaki; Brian Munsky; Timothy J. Stasevich 2018 2018-11-24 BioRxiv N 10.1101/478040 4fm1skgh 0.383229 Lamb_1991, Morikawa_1992, Stork_2011, Rice_1992
116 de Messieres_2014 Single-Molecule Measurements of the CCR5 mRNA Unfolding Pathways de Messieres, Michel; Chang, Jen-Chien; Belew, Ashton Trey; Meskauskas, Arturas; Dinman, Jonathan D.; La Porta, Arthur 2014 2014-01-01 PMC N PMC3907219 24411256.0 10.1016/j.bpj.2013.09.036 dvnkhgov 0.377257 Morikawa_1992, Brierley_1989, Hatfield_1990, Atkins_1999, Martínez-Salas_2008 Bénard_1996
117 Firth_2010 Evidence for ribosomal frameshifting and a novel overlapping gene in the genomes of insect-specific flaviviruses Firth, Andrew E.; Blitvich, Bradley J.; Wills, Norma M.; Miller, Cathy L.; Atkins, John F. 2010 2010-03-30 None N PMC2830293 20097399.0 10.1016/j.virol.2009.12.033 x1nmbr4g 0.358612 Rice_1992, Lamb_1991, Morikawa_1992, Stork_2011, Ryu_W_2017 Firth_2009, Nowak_1984
118 Chou_2009 An intermolecular RNA triplex provides insight into structural determinants for the pseudoknot stimulator of −1 ribosomal frameshifting Chou, Ming-Yuan; Chang, Kung-Yao 2009 2009-12-08 NONCOMM N PMC2836554 20007152.0 10.1093/nar/gkp1107 8gnn6l4b 0.358306 Morikawa_1992, Brierley_1989, Stork_2011, Atkins_1999, Brierley_1991 Su_M_2005, Marczinke_1998, Marcheschi_2007
119 Tajima_2011 A long-distance RNA–RNA interaction plays an important role in programmed −1 ribosomal frameshifting in the translation of p88 replicase protein of Red clover necrotic mosaic virus Tajima, Yuri; Iwakawa, Hiro-oki; Kaido, Masanori; Mise, Kazuyuki; Okuno, Tetsuro 2011 2011-08-15 PMC N PMC7111920 21703656.0 10.1016/j.virol.2011.05.012 ywjk962a 0.355901 Stork_2011, Chen_2013, Lamb_1991 Bhullar_2014, Sasvari_2011, Okamoto_2008
120 Larsen_1997 Structural probing and mutagenic analysis of the stem-loop required for Escherichia coli dnaX ribosomal frameshifting: programmed efficiency of 50% 1 1 Edited By D. E. Draper Larsen, Bente; Gesteland, Raymond F; Atkins, John F 1997 1997-08-08 PMC N PMC7126992 9300054.0 10.1006/jmbi.1997.1162 169j2woy 0.355708 Morikawa_1992, Hatfield_1990, Krause_1987, Brierley_1989 Marczinke_1998
121 Chen_2017 Coordination among tertiary base pairs results in an efficient frameshift-stimulating RNA pseudoknot Chen, Yu-Ting; Chang, Kai-Chun; Hu, Hao-Teng; Chen, Yi-Lan; Lin, You-Hsin; Hsu, Chiung-Fang; Chang, Cheng-Fu; Chang, Kung-Yao; Wen, Jin-Der 2017 2017-06-02 None N PMC5449628 28334864.0 10.1093/nar/gkx134 aofirvc8 0.354673 Morikawa_1992, Brierley_1989, Atkins_1999, Brierley_1991 Marcheschi_2007, Cornish_2006, Marczinke_1998
122 Niu_S_2014 An infectious RNA with a hepta-adenosine stretch responsible for programmed −1 ribosomal frameshift derived from a full-length cDNA clone of Hibiscus latent Singapore virus Niu, Shengniao; Cao, Shishu; Wong, Sek-Man 2014 2014-01-20 PMC N PMC7127180 24418557.0 10.1016/j.virol.2013.11.021 4s54jrww 0.351224 Morikawa_1992, Stork_2011, Gendron_2010, Chen_2013, Jendrach_2014 Nowak_1984
123 Brierley_1989 Characterization of an efficient coronavirus ribosomal frameshifting signal: Requirement for an RNA pseudoknot Brierley, Ian; Digard, Paul; Inglis, Stephen C. 1989 1989-05-19 PMC N PMC7133225 2720781.0 10.1016/0092-8674(89)90124-4 5i3g2zb7 0.350256 Morikawa_1992, Hatfield_1990, Krause_1987, Lamb_1991 Brierley_1991, Su_M_2005
124 Cattaneo_1989 How ‘hidden’ reading frames are expressed Cattaneo, Roberto 1989 1989-05-31 PMC N 2773038.0 10.1016/0968-0004(89)90266-1 nmn41dh5 0.349202 Lamb_1991, Hatfield_1990, Morikawa_1992, Firth_2009
125 Abrahams_2017 Adenine Enrichment at the Fourth CDS Residue in Bacterial Genes Is Consistent with Error Proofing for +1 Frameshifts Abrahams, Liam; Hurst, Laurence D 2017 2017-08-24 COMM-USE N PMC5850271 28961919.0 10.1093/molbev/msx223 sex63uvb 0.348490 Morikawa_1992, Firth_2009, Hatfield_1990 Firth_2009, Sekine_1992
126 Olspert_2015 Transcriptional slippage in the positive-sense RNA virus family Potyviridae Olspert, Allan; Chung, Betty Y-W; Atkins, John F; Carr, John P; Firth, Andrew E 2015 2015-06-25 COMM-USE N PMC4552492 26113364.0 10.15252/embr.201540509 fjrq63me 0.333545 Rice_1992, Stork_2011, Auewarakul_2005 Firth_2009
127 Sakai_1991 Mitochondrial mutations restricting spontaneous translational frameshift suppression in the yeast Saccharomyces cerevisiae Sakai, Hajime; Stiess, Renate; Weiss-Brummer, Brigitte 1991 1991-01-01 PMC N PMC7088400 1648170.0 10.1007/bf00259684 p4mhvogk 0.328626 Morikawa_1992, Krause_1987 Weiss-Brummer_1995, Satyanarayana_2003
128 Diwan_2018 Wobbling Forth and Drifting Back: The Evolutionary History and Impact of Bacterial tRNA Modifications Diwan, Gaurav D; Agashe, Deepa 2018 2018-05-28 NONCOMM N PMC6063277 29846694.0 10.1093/molbev/msy110 igpd93oh 0.315497 Lamb_1991, Morikawa_1992, Krause_1987 Belcourt_1990, Popow_2012
129 Hilimire_2015 N-Methylation as a Strategy for Enhancing the Affinity and Selectivity of RNA-binding Peptides: Application to the HIV-1 Frameshift-Stimulating RNA Hilimire, Thomas\nA.; Bennett, Ryan P.; Stewart, Ryan A.; Garcia-Miranda, Pablo; Blume, Alex; Becker, Jordan; Sherer, Nathan; Helms, Eric D.; Butcher, Samuel E.; Smith, Harold C.; Miller, Benjamin L. 2015 2015-10-23 None N PMC4720131 26496521.0 10.1021/acschembio.5b00682 rx90f66k 0.313179 Stork_2011, Rice_1992 Bhullar_2014
130 Penno_2017 Stimulation of reverse transcriptase generated cDNAs with specific indels by template RNA structure: retrotransposon, dNTP balance, RT-reagent usage Penno, Christophe; Kumari, Romika; Baranov, Pavel V.; van Sinderen, Douwe; Atkins, John F. 2017 2017-09-29 NONCOMM N PMC5737552 28973469.0 10.1093/nar/gkx689 k4gtl2o7 0.312708 Stork_2011, Morikawa_1992, Lamb_1991, Rice_1992, Payne_2017
131 Czech_2019 Octa-repeat domain of the mammalian prion protein mRNA forms stable A-helical hairpin structure rather than G-quadruplexes Czech, Andreas; Konarev, Petr V.; Goebel, Ingrid; Svergun, Dmitri I.; Wills, Peter R.; Ignatova, Zoya 2019 2019-02-21 None N PMC6384910 30792490.0 10.1038/s41598-019-39213-2 xmgkpk0b 0.311789 Morikawa_1992, Atkins_1999, Pong_2011, Krause_1987, Guo_Y_2013 Marcheschi_2007, Marczinke_1998
132 Firth_2011 Stimulation of stop codon readthrough: frequent presence of an extended 3′ RNA structural element Firth, Andrew E.; Wills, Norma M.; Gesteland, Raymond F.; Atkins, John F. 2011 2011-04-27 NONCOMM N PMC3159437 21525127.0 10.1093/nar/gkr224 2u49b7xo 0.309977 Morikawa_1992, Lamb_1991, Firth_2009, Hatfield_1990 Napthine_2009
133 Hatfield_1992 Translational Suppression in Retroviral GENE Expression Hatfield, Dolph L.; Levin, Judith G.; Rein, Alan; Oroszlan, Stephen 1992 1992-12-31 PMC N 1575083.0 10.1016/s0065-3527(08)60037-8 hy8zihx6 0.305037 Rice_1992 Nowak_1984, Tzeng_2006
134 Mazauric_2009 Interaction of the HIV-1 frameshift signal with the ribosome Mazauric, Marie-Hélène; Seol, Yeonee; Yoshizawa, Satoko; Visscher, Koen; Fourmy, Dominique 2009 2009-10-07 NONCOMM N PMC2794165 19812214.0 10.1093/nar/gkp779 ftxq9g7h 0.302769 Morikawa_1992, Brierley_1989, Atkins_1999, Guo_Y_2013, Stork_2011 Marcheschi_2007, Marczinke_1998