Topic 08 -- Abstracts with Biological Entities (English) - 75 Topics / Sub-Topic Model 19 - 15 Topics

cite ad title authors publish year publish time dataset abstract mentions covid pmcid pubmed id doi cord uid topic weight Similarity scispacy Similarity specter
1 Rowley_2016 XRN1 Is a Species-Specific Virus Restriction Factor in Yeasts Rowley, Paul A.; Ho, Brandon; Bushong, Sarah; Johnson, Arlen; Sawyer, Sara L. 2016 2016-10-06 COMM-USE N PMC5053509 27711183.0 10.1371/journal.ppat.1005890 uvvstxf6 0.887498 Stork_2011, Rice_1992 Rowley_2016
2 Rowley_2016 XRN1 is a Species-Specific Virus Restriction Factor in Yeasts Paul A. Rowley; Brandon Ho; Sarah Bushong; Arlen Johnson; Sara L. Sawyer 2016 2016-08-16 BioRxiv N 10.1101/069799 1znuxoj5 0.873885 Stork_2011, Rice_1992, Rowley_2016 Rowley_2016
3 Ivanyi-Nagy_2012 Core protein-mediated 5′–3′ annealing of the West Nile virus genomic RNA in vitro Ivanyi-Nagy, Roland; Darlix, Jean-Luc 2012 2012-08-31 PMC N 22652509.0 10.1016/j.virusres.2012.05.003 rkq5wn0x 0.863560 Stork_2011, Pong_2011, Rice_1992
4 Ivanyi-Nagy_2012 Reprint of: Core protein-mediated 5′–3′ annealing of the West Nile virus genomic RNA in vitro Ivanyi-Nagy, Roland; Darlix, Jean-Luc 2012 2012-11-30 PMC N 10.1016/j.virusres.2012.09.009 dv6aak01 0.843331 Stork_2011, Pong_2011, Rice_1992
5 Diaz_2011 Bromovirus RNA Replication Compartment Formation Requires Concerted Action of 1a's Self-Interacting RNA Capping and Helicase Domains Diaz, Arturo; Gallei, Andreas; Ahlquist, Paul 2011 2011-11-16 PMC N PMC3255829 22090102.0 10.1128/jvi.05684-11 0mtqlnog 0.778713 Stork_2011, Pong_2011 Bhullar_2014
6 Espinosa-Hernández_2014 PTB Binds to the 3’ Untranslated Region of the Human Astrovirus Type 8: A Possible Role in Viral Replication Espinosa-Hernández, Wendy; Velez-Uriza, Dora; Valdés, Jesús; Vélez-Del Valle, Cristina; Salas-Benito, Juan; Martínez-Contreras, Rebeca; García-Espítia, Matilde; Salas-Benito, Mariana; Vega-Almeida, Tania; De Nova-Ocampo, Mónica 2014 2014-11-18 COMM-USE N PMC4236132 25406089.0 10.1371/journal.pone.0113113 apbs2ltb 0.750609 Stork_2011 Gutiérrez-Escolano_2003
7 Marquez-Jurado_2015 Identification of a Gamma Interferon-Activated Inhibitor of Translation-Like RNA Motif at the 3′ End of the Transmissible Gastroenteritis Coronavirus Genome Modulating Innate Immune Response Marquez-Jurado, Silvia; Nogales, Aitor; Zuñiga, Sonia; Enjuanes, Luis; Almazán, Fernando 2015 2015-03-10 NONCOMM N PMC4453530 25759500.0 10.1128/mbio.00105-15 9aaxxh07 0.728513 Stork_2011, Pong_2011 YU_W_1995
8 Liu_L_2009 An Amphipathic α-Helix Controls Multiple Roles of Brome Mosaic Virus Protein 1a in RNA Replication Complex Assembly and Function Liu, Ling; Westler, William M.; den Boon, Johan A.; Wang, Xiaofeng; Diaz, Arturo; Steinberg, H. Adam; Ahlquist, Paul 2009 2009-03-27 COMM-USE N PMC2654722 19325881.0 10.1371/journal.ppat.1000351 ue15waq7 0.712824 Stork_2011, Diaz_2011 Xia_H_2015
9 Hou_L_2014 Archaeal DnaG contains a conserved N-terminal RNA-binding domain and enables tailing of rRNA by the exosome Hou, Linlin; Klug, Gabriele; Evguenieva-Hackenberg, Elena 2014 2014-11-10 COMM-USE N PMC4227792 25326320.0 10.1093/nar/gku969 l1r416w7 0.704659 Gorbalenya_1988, Stork_2011 Vasquez-Del_Carpio_2006
10 Arif_2017 The GAIT Translational Control System Arif, Abul; Yao, Peng; Terenzi, Fulvia; Jia, Jie; Ray, Partho Sarothi; Fox, Paul L. 2017 2017-11-20 PMC N PMC5815886 29152905.0 10.1002/wrna.1441 2tmsxja8 0.673173 Marquez-Jurado_2015
11 Landeo-Ríos_2016 The p22 RNA silencing suppressor of the crinivirus Tomato chlorosis virus preferentially binds long dsRNAs preventing them from cleavage Landeo-Ríos, Yazmín; Navas-Castillo, Jesús; Moriones, Enrique; Cañizares, M. Carmen 2016 2016-01-15 PMC N PMC7111720 26629953.0 10.1016/j.virol.2015.11.008 i6os0p47 0.622564 Stork_2011
12 Woo_J_2019 An in vivo cell-based assay for investigating the specific interaction between the SARS-CoV N-protein and its viral RNA packaging sequence Woo, Jiwon; Lee, Eunice Yoojin; Lee, Mirae; Kim, Taeyeon; Cho, Yong-Eun 2019 2019-12-10 PMC N PMC7092827 31594639.0 10.1016/j.bbrc.2019.09.115 i1rhuwvo 0.615647 Rice_1992, Stork_2011, Pong_2011
13 Pong_2011 RNA binding property and RNA chaperone activity of dengue virus core protein and other viral RNA-interacting proteins Pong, Wen-Li; Huang, Zhi-Shun; Teoh, Pak-Guan; Wang, Chung-Chun; Wu, Huey-Nan 2011 2011-08-19 None N PMC7164067 21771593.0 10.1016/j.febslet.2011.06.038 rwqxl2yj 0.613867 Stork_2011
14 Yang_2018 Molecular identification and transcriptional regulation of porcine IFIT2 gene Yang, Xiuqin; Jing, Xiaoyan; Song, Yanfang; Zhang, Caixia; Liu, Di 2018 2018-04-06 PMC N PMC7088635 29623507.0 10.1007/s11033-018-4179-7 91t8f7o1 0.571652 Morikawa_1992, Jendrach_2014, Krause_1987, Luytjes_1988, Firth_2009
15 Maines_2005 Two cellular proteins that interact with a stem loop in the simian hemorrhagic fever virus 3′(+)NCR RNA Maines, Taronna R.; Young, Mary; Dinh, Nikita Nhu-Nguyen; Brinton, Margo A. 2005 2005-05-31 PMC N PMC7126611 15763141.0 10.1016/j.virusres.2004.11.014 8hvznle0 0.568425 Pong_2011, Stork_2011, Gorbalenya_1988
16 Liu_Z_2016 Viral RNA switch mediates the dynamic control of flavivirus replicase recruitment by genome cyclization Liu, Zhong-Yu; Li, Xiao-Feng; Jiang, Tao; Deng, Yong-Qiang; Ye, Qing; Zhao, Hui; Yu, Jiu-Yang; Qin, Cheng-Feng 2016 2016-10-01 COMM-USE N PMC5101012 27692070.0 10.7554/elife.17636 gzxtjf0a 0.552678 Rice_1992, Stork_2011, Pong_2011, Ryu_W_2017 Masante_2015, Bhullar_2014
17 Kuo_L_2016 A key role for the carboxy-terminal tail of the murine coronavirus nucleocapsid protein in coordination of genome packaging Kuo, Lili; Koetzner, Cheri A.; Masters, Paul S. 2016 2016-07-31 PMC N PMC4884538 27105451.0 10.1016/j.virol.2016.04.009 pujlr8uf 0.551767 Stork_2011, Pong_2011, Rice_1992
18 Cotelesage_2011 Hepatitis B Virus Genotype G forms core-like particles with unique structural properties Cotelesage, J J H; Osiowy, C; Lawrence, C; deVarennes, S L; Teow, S; Beniac, D R; Booth, T F 2011 2011-06-23 COMM-USE N PMC3116152 20546498.0 10.1111/j.1365-2893.2010.01330.x crolji1q 0.541553 Morikawa_1992, Luytjes_1988
19 YU_W_1995 A Conserved Motif at the 3′ End of Mouse Hepatitis Virus Genomic RNA Required for Host Protein Binding and Viral RNA Replication YU, WEI; LEIBOWITZ, JULIAN L. 1995 1995-12-01 PMC N PMC7130855 8525608.0 10.1006/viro.1995.9947 p9dl7whd 0.505573 Stork_2011, Rice_1992, Banerjee_2001, Pong_2011 Bhullar_2014, Nowak_1984
20 Galán_2009 Host cell proteins interacting with the 3′ end of TGEV coronavirus genome influence virus replication Galán, Carmen; Sola, Isabel; Nogales, Aitor; Thomas, Benjamin; Akoulitchev, Alexandre; Enjuanes, Luis; Almazán, Fernando 2009 2009-09-01 PMC N PMC7118768 19580983.0 10.1016/j.virol.2009.06.006 6ghod65y 0.502455 Stork_2011, Pong_2011 Tzeng_2006, Bhullar_2014
21 Molenkamp_1997 Identification of a Specific Interaction between the Coronavirus Mouse Hepatitis Virus A59 Nucleocapsid Protein and Packaging Signal Molenkamp, Richard; Spaan, Willy J.M. 1997 1997-12-08 PMC N PMC7130520 9426448.0 10.1006/viro.1997.8867 14nfqusv 0.495616 Stork_2011, Rice_1992, Pong_2011 Nowak_1984
22 Soowannayan_2011 RNA-Binding Domain in the Nucleocapsid Protein of Gill-Associated Nidovirus of Penaeid Shrimp Soowannayan, Chumporn; Cowley, Jeff A.; Michalski, Wojtek P.; Walker, Peter J. 2011 2011-08-03 COMM-USE N PMC3153931 21857914.0 10.1371/journal.pone.0022156 4nhy35xn 0.466621 Pong_2011, Stork_2011, Gorbalenya_1988, Luytjes_1988
23 Masters_2019 Coronavirus genomic RNA packaging Masters, Paul S. 2019 2019-11-30 PMC N PMC7112113 31505321.0 10.1016/j.virol.2019.08.031 667urmpq 0.456688 Rice_1992 Athmer_2018
24 Xie_M_2009 A phage RNA-binding protein binds to a non-cognate structured RNA and stabilizes its core structure Xie, Mao-Hua; Wu, Qi-Jia; Jiang, Yan-Fei; Bao, Penghui; Zhang, Yi 2009 2009-01-09 PMC N PMC7117394 19000653.0 10.1016/j.bbrc.2008.10.160 job4854r 0.453631 Stork_2011, Pong_2011, Gorbalenya_1988, Hou_L_2014 Gopinath_2015
25 UNKNOWN_1988 Integration of membrane proteins into the endoplasmic reticulum requires GTP None 1988 1988-07-01 NONCOMM N PMC2115162 2839521.0 inlq9ee8 0.450795
26 Wang_2012 The R-rich motif of Beet black scorch virus P7a movement protein is important for the nuclear localization, nucleolar targeting and viral infectivity Wang, Xiaohui; Zhang, Yanjing; Xu, Jin; Shi, Lindan; Fan, Huiyan; Han, Chenggui; Li, Dawei; Yu, Jialin 2012 2012-08-31 PMC N 10.1016/j.virusres.2012.05.001 p9kwqle8 0.440841
27 Athmer_2018 Selective Packaging in Murine Coronavirus Promotes Virulence by Limiting Type I Interferon Responses Athmer, Jeremiah; Fehr, Anthony R.; Grunewald, Matthew E.; Qu, Wen; Wheeler, D. Lori; Graepel, Kevin W.; Channappanavar, Rudragouda; Sekine, Aimee; Aldabeeb, Dana Saud; Gale, Michael; Denison, Mark R.; Perlman, Stanley 2018 2018-05-01 COMM-USE N PMC5930304 29717007.0 10.1128/mbio.00272-18 geesc6xx 0.436801 Rice_1992, Stork_2011 Masante_2015
28 Li_Z_2009 Translation Elongation Factor 1A is a component of the tombusvirus replicase complex and affects the stability of the p33 replication co-factor Li, Zhenghe; Pogany, Judit; Panavas, Tadas; Xu, Kai; Esposito, Anthony M.; Kinzy, Terri Gross; Nagy, Peter D. 2009 2009-03-01 PMC N PMC2785496 19131084.0 10.1016/j.virol.2008.11.041 06qfbvlr 0.418376 Stork_2011, Rice_1992 Sasvari_2011
29 Königs_2020 SRSF7 maintains its homeostasis through the expression of Split-ORFs and nuclear body assembly Königs, Vanessa; de Oliveira Freitas Machado, Camila; Arnold, Benjamin; Blümel, Nicole; Solovyeva, Anfisa; Löbbert, Sinah; Schafranek, Michal; Ruiz De Los Mozos, Igor; Wittig, Ilka; McNicoll, Francois; Schulz, Marcel H.; Müller-McNicoll, Michaela 2020 2020-03-02 PMC N PMC7096898 32123389.0 10.1038/s41594-020-0385-9 0dab3c2u 0.416118 Sasvari_2011
30 Gutiérrez-Escolano_2003 La, PTB, and PAB proteins bind to the 3′ untranslated region of Norwalk virus genomic RNA Gutiérrez-Escolano, Ana Lorena; Vázquez-Ochoa, Melina; Escobar-Herrera, Jaime; Hernández-Acosta, Javier 2003 2003-11-21 PMC N PMC7111188 14623338.0 10.1016/j.bbrc.2003.10.066 hm8d42fq 0.395023 Stork_2011
31 Mendes_2018 Alphavirus Nucleocapsid Packaging and Assembly Mendes, Adriano; Kuhn, Richard J. 2018 2018-03-20 COMM-USE N PMC5869531 29558394.0 10.3390/v10030138 5h8mtupm 0.385794
32 Khromykh_1996 RNA binding properties of core protein of the flavivirus Kunjin Khromykh, A. A.; Westaway, E. G. 1996 1996-01-01 PMC N PMC7086803 8645104.0 10.1007/bf01718326 66t5fjld 0.384268 Pong_2011, Stork_2011, Luytjes_1988, Banerjee_2001, Vennema_1991 Goldberg_1991
33 Galinski_1992 RNA editing in the phosphoprotein gene of the human parainfluenza virus type 3 Galinski, Mark S.; Troy, Roberta M.; Banerjee, Amiya K. 1992 1992-02-29 PMC N PMC7130814 1310183.0 10.1016/0042-6822(92)90020-p l6wh0gud 0.384191 Banerjee_2001, Morikawa_1992, Rice_1992, Krause_1987 Nowak_1984, Goldberg_1991
34 Sivanandam_2016 Functional analysis of the N-terminal basic motif of a eukaryotic satellite RNA virus capsid protein in replication and packaging Sivanandam, Venkatesh; Mathews, Deborah; Garmann, Rees; Erdemci-Tandogan, Gonca; Zandi, Roya; Rao, A. L. N. 2016 2016-05-19 COMM-USE N PMC4872054 27193742.0 10.1038/srep26328 jvr1t6t2 0.383699 Stork_2011, Pong_2011, Rice_1992, Gorbalenya_1988 Bhullar_2014, YU_W_1995
35 Sola_2011 RNA-RNA and RNA-protein interactions in coronavirus replication and transcription Sola, Isabel; Mateos-Gomez, Pedro A; Almazan, Fernando; Zuñiga, Sonia; Enjuanes, Luis 2011 2011-03-01 PMC N PMC3230552 21378501.0 10.4161/rna.8.2.14991 kmwncmq8 0.368159 Stork_2011 Bhullar_2014
36 Lo_C_2019 Interaction of coronavirus nucleocapsid protein with the 5′‐ and 3′‐ends of the coronavirus genome is involved in genome circularization and negative‐strand RNA synthesis Lo, Chen‐Yu; Tsai, Tsung‐Lin; Lin, Chao‐Nan; Lin, Ching‐Hung; Wu, Hung‐Yi 2019 2019-05-08 PMC N PMC7164124 31034708.0 10.1111/febs.14863 ap0w40vn 0.365886 Stork_2011
37 Cologna_2000 Identification of Nucleocapsid Binding Sites within Coronavirus-Defective Genomes Cologna, Raymond; Spagnolo, Jeannie F.; Hogue, Brenda G. 2000 2000-11-25 PMC N PMC7131401 11080472.0 10.1006/viro.2000.0611 zo2ff0jk 0.355805 Rice_1992, Stork_2011, Banerjee_2001, Lin_X_2015 Bhullar_2014
38 Luque_2009 Infectious Bursal Disease Virus: Ribonucleoprotein Complexes of a Double-Stranded RNA Virus Luque, Daniel; Saugar, Irene; Rejas, María Teresa; Carrascosa, José L.; Rodríguez, José F.; Castón, José R. 2009 2009-02-27 PMC N 19063900.0 10.1016/j.jmb.2008.11.029 ax8ybkcr 0.349754 Stork_2011, Rice_1992, Pong_2011
39 Hastie_2012 Structural Basis for the dsRNA Specificity of the Lassa Virus NP Exonuclease Hastie, Kathryn M.; King, Liam B.; Zandonatti, Michelle A.; Saphire, Erica Ollmann 2012 2012-08-28 COMM-USE N PMC3429428 22937163.0 10.1371/journal.pone.0044211 x5tlnv6i 0.348428 Stork_2011, Pong_2011
40 Bhullar_2014 Cytoplasmic Translocation of Polypyrimidine Tract-Binding Protein and Its Binding to Viral RNA during Japanese Encephalitis Virus Infection Inhibits Virus Replication Bhullar, Deepika; Jalodia, Richa; Kalia, Manjula; Vrati, Sudhanshu 2014 2014-12-29 COMM-USE N PMC4278868 25545659.0 10.1371/journal.pone.0114931 35xqgbut 0.348349 Stork_2011, Rice_1992, Pong_2011 YU_W_1995
41 Chen_2018 The conserved stem-loop II structure at the 3' untranslated region of Japanese encephalitis virus genome is required for the formation of subgenomic flaviviral RNA Chen, Yi-Shiuan; Fan, Yi-Hsin; Tien, Chih-Feng; Yueh, Andrew; Chang, Ruey-Yi 2018 2018-07-26 COMM-USE N PMC6062100 30048535.0 10.1371/journal.pone.0201250 3se1wp8o 0.346547 Stork_2011, Chen_2013, Banerjee_2001
42 Kwak_2011 Annexin A2 Binds RNA and Reduces the Frameshifting Efficiency of Infectious Bronchitis Virus Kwak, Hoyun; Park, Min Woo; Jeong, Sunjoo 2011 2011-08-30 COMM-USE N PMC3168876 21918681.0 10.1371/journal.pone.0024067 uqrwq5qk 0.341360 Stork_2011, Pong_2011
43 Herold_2001 Poliovirus RNA Replication Requires Genome Circularization through a Protein–Protein Bridge Herold, Jens; Andino, Raul 2001 2001-03-01 PMC N PMC7129834 11463383.0 10.1016/s1097-2765(01)00205-2 gs8s7kn8 0.336797 Stork_2011, Pong_2011 Bhullar_2014, YU_W_1995
44 Hsin_2018 Nucleocapsid protein-dependent assembly of the RNA packaging signal of Middle East respiratory syndrome coronavirus Hsin, Wei-Chen; Chang, Chan-Hua; Chang, Chi-You; Peng, Wei-Hao; Chien, Chung-Liang; Chang, Ming-Fu; Chang, Shin C. 2018 2018-05-24 COMM-USE N PMC5966903 29793506.0 10.1186/s12929-018-0449-x lcu1mgno 0.331039 Rice_1992, Pong_2011, Stork_2011 Bhullar_2014
45 Comas-Garcia_2019 Packaging of Genomic RNA in Positive-Sense Single-Stranded RNA Viruses: A Complex Story Comas-Garcia, Mauricio 2019 2019-03-13 COMM-USE N PMC6466141 30871184.0 10.3390/v11030253 koo0d6g9 0.329433 Stork_2011, Rice_1992, Payne_2017 Bhullar_2014
46 Sasvari_2011 Synergistic Roles of Eukaryotic Translation Elongation Factors 1Bγ and 1A in Stimulation of Tombusvirus Minus-Strand Synthesis Sasvari, Zsuzsanna; Izotova, Lara; Kinzy, Terri Goss; Nagy, Peter D. 2011 2011-12-15 COMM-USE N PMC3240602 22194687.0 10.1371/journal.ppat.1002438 tkfozwpf 0.322589 Stork_2011 Li_Z_2009
47 Haimovich_2020 Identification and enrichment of SECReTE cis-acting RNA elements in the Coronaviridae and other (+) single-strand RNA viruses Gal Haimovich; Tsviya Olender; Camila Baez; Jeffrey E Gerst 2020 2020-04-20 BioRxiv Y 10.1101/2020.04.20.050088 2bh5j5p0 0.319643 Rice_1992, Stork_2011
48 Grossoehme_2009 Coronavirus N Protein N-Terminal Domain (NTD) Specifically Binds the Transcriptional Regulatory Sequence (TRS) and Melts TRS-cTRS RNA Duplexes Grossoehme, Nicholas E.; Li, Lichun; Keane, Sarah C.; Liu, Pinghua; Dann, Charles E.; Leibowitz, Julian L.; Giedroc, David P. 2009 2009-12-04 None N PMC2783395 19782089.0 10.1016/j.jmb.2009.09.040 62vgvjz0 0.318623 Pong_2011, Stork_2011 Bhullar_2014
49 Salim_2008 Functional Analysis of the 5′ Genomic Sequence of a Bovine Norovirus Salim, Omar; Clarke, Ian N.; Lambden, Paul R. 2008 2008-05-14 COMM-USE N PMC2364642 18478070.0 10.1371/journal.pone.0002169 7jszm1nd 0.308759 Stork_2011, Vennema_1991, Morikawa_1992 Goldberg_1991, Tzeng_2006