Topic 01 -- Abstracts with Biological Entities (English) - 75 Topics / Sub-Topic Model 19 - 15 Topics

cite ad title authors publish year publish time dataset abstract mentions covid pmcid pubmed id doi cord uid topic weight Similarity scispacy Similarity specter
1 Chetverin_1999 The puzzle of RNA recombination Chetverin, Alexander B 1999 1999-10-22 PMC N 10571050.0 10.1016/s0014-5793(99)01282-x p1qyxmes 0.981866 Gmyl_2005, Rice_1992
2 He_G_2020 Brome Mosaic Virus (Bromoviridae) ☆ He, Guijuan; Zhang, Zhenlu; Sathanantham, Preethi; Diaz, Arturo; Wang, Xiaofeng 2020 2020-12-31 PMC N 10.1016/b978-0-12-809633-8.21294-6 2qompc3u 0.936040 Ryu_W_2017, Rice_1992
3 Jarvis_1991 The polymerase in its labyrinth: mechanisms and implications of RNA recombination Jarvis, Thale C.; Kirkegaard, Karla 1991 1991-06-30 PMC N 1712518.0 10.1016/0168-9525(91)90434-r 8guwbmzo 0.924536 Gopinath_2015
4 Robertson_1999 Chapter 2 Virus Origins Conjoined RNA Genomes as Precursors to DNA Genomes Robertson, Hugh D.; Neel, Olivia D. 1999 1999-12-31 PMC N PMC7155586 10.1016/b978-012220360-2/50003-9 zqnczjpp 0.905282 Rice_1992, Wu_B_2009, Stork_2011 Adams_2003, Tzeng_2006
5 Liu_Y_2009 Cis-acting RNA elements in human and animal plus-strand RNA viruses Liu, Ying; Wimmer, Eckard; Paul, Aniko V. 2009 2009-10-31 None N PMC2783963 19781674.0 10.1016/j.bbagrm.2009.09.007 c1kjvfwj 0.891562 Rice_1992, Stork_2011, Martínez-Salas_2008 Bhullar_2014
6 Bujarski_1994 Molecular Studies of Genetic RNA–RNA Recombination in Brome Mosaic Virus Bujarski, Jozef J.; Nagy, Peter D.; Flasinski, Stanislaw 1994 1994-12-31 PMC N 8191956.0 10.1016/s0065-3527(08)60051-2 0u2fatbg 0.884710 Rice_1992, Auewarakul_2005, Payne_2017, Gmyl_2005 Adams_2003
7 Bujarski_2008 Recombination Bujarski, J.J. 2008 2008-12-31 PMC N PMC7148591 10.1016/b978-012374410-4.00545-8 31xmue1g 0.858322 Rice_1992, Payne_2017
8 Payne_2017 Chapter 10 Introduction to RNA Viruses Payne, Susan 2017 2017-12-31 PMC N 10.1016/b978-0-12-803109-4.00010-6 jxhtdhgg 0.857439 Rice_1992, Stork_2011, Banerjee_2001
9 Bujarski_2013 Genetic recombination in plant-infecting messenger-sense RNA viruses: overview and research perspectives Bujarski, Jozef J. 2013 2013-03-26 COMM-USE N PMC3607795 23533000.0 10.3389/fpls.2013.00068 salby0fu 0.832786 Rice_1992, Stork_2011, Payne_2017 Adams_2003
10 Lawton_2000 Mechanism of genome transcription in segmented dsRNA viruses Lawton, Jeffrey A; Estes, Mary K; Venkataram Prasad, B.V 2000 2000-12-31 PMC N 11050943.0 10.1016/s0065-3527(00)55004-0 bbpmlo3c 0.820690 Rice_1992, Stork_2011 Tzeng_2006
11 Miller_2006 Long-Distance RNA-RNA Interactions in Plant Virus Gene Expression and Replication Miller, W. Allen; White, K. Andrew 2006 2006-09-01 PMC N PMC1894749 16704356.0 10.1146/annurev.phyto.44.070505.143353 avd20f45 0.819886 Rice_1992 Bhullar_2014, Wu_B_2009
12 Chetverin_2004 Replicable and recombinogenic RNAs Chetverin, Alexander B. 2004 2004-06-01 PMC N 15165890.0 10.1016/j.febslet.2004.03.066 xdouv8me 0.819443 Kozak_1994, Rice_1992, Wu_B_2009
13 Wang_2008 Brome Mosaic Virus Wang, X.; Ahlquist, P. 2008 2008-12-31 PMC N 10.1016/b978-012374410-4.00560-4 po4p1466 0.812567 Rice_1992, Ryu_W_2017, Stork_2011
14 Wu_B_2009 A Discontinuous RNA Platform Mediates RNA Virus Replication: Building an Integrated Model for RNA–based Regulation of Viral Processes Wu, Baodong; Pogany, Judit; Na, Hong; Nicholson, Beth L.; Nagy, Peter D.; White, K. Andrew 2009 2009-03-06 COMM-USE N PMC2648310 19266082.0 10.1371/journal.ppat.1000323 tx5ff5gk 0.810965 Rice_1992, Stork_2011 Bhullar_2014
15 Lin_H_2004 A complex network of RNA–RNA interactions controls subgenomic mRNA transcription in a tombusvirus Lin, Han-Xin; White, K Andrew 2004 2004-07-29 PMC N PMC514510 15282544.0 10.1038/sj.emboj.7600336 03s4zp4q 0.787532 Rice_1992, Stork_2011 Li_Z_2009
16 Gmyl_2005 Diverse Mechanisms of RNA Recombination Gmyl, A. P.; Agol, V. I. 2005 2005-01-01 PMC N PMC7089151 10.1007/s11008-005-0069-x 5t5xthk6 0.758816 Rice_1992, Stork_2011 Adams_2003
17 Kozak_1994 Determinants of translational fidelity and efficiency in vertebrate mRNAs Kozak, M. 1994 1994-12-31 PMC N 7880897.0 10.1016/0300-9084(94)90182-1 y1vr1db0 0.753711 Martínez-Salas_2008, Rodnina_2020 Oh_S_1993, Trifonov_1992
18 Auewarakul_2005 Composition bias and genome polarity of RNA viruses Auewarakul, Prasert 2005 2005-04-30 PMC N PMC7114242 15826910.0 10.1016/j.virusres.2004.10.004 je6oe1h4 0.748169 Rice_1992, Banerjee_2001, Payne_2017 Masante_2015
19 Wu_B_2007 Uncoupling RNA virus replication from transcription via the polymerase: functional and evolutionary insights Wu, Baodong; White, K Andrew 2007 2007-11-22 PMC N PMC2140117 18034156.0 10.1038/sj.emboj.7601931 qufm6boc 0.744375 Stork_2011, Rice_1992 Bhullar_2014
20 Rice_1992 Examples of expression systems based on animal RNA viruses: Alphaviruses and influenza virus Rice, Charles M. 1992 1992-10-31 PMC N 1369402.0 10.1016/0958-1669(92)90081-s 4ih3d2d1 0.702090 Stork_2011, Ryu_W_2017 Tzeng_2006
21 Cimino_2011 Multifaceted Regulation of Translational Readthrough by RNA Replication Elements in a Tombusvirus Cimino, Peter A.; Nicholson, Beth L.; Wu, Baodong; Xu, Wei; White, K. Andrew 2011 2011-12-08 COMM-USE N PMC3234231 22174683.0 10.1371/journal.ppat.1002423 d4ok8wxs 0.692995 Stork_2011, Rice_1992, Pong_2011 Bhullar_2014, Okamoto_2008
22 McDonald_2013 RNA synthetic mechanisms employed by diverse families of RNA viruses McDonald, Sarah M. 2013 2013-04-18 PMC N PMC7169773 23606593.0 10.1002/wrna.1164 cnwfvtfo 0.688590 Stork_2011, Rice_1992, Payne_2017
23 Strauss_1991 RNA viruses: genome structure and evolution Strauss, Ellen G.; Strauss, James H. 1991 1991-12-31 PMC N PMC7133357 1822281.0 10.1016/s0959-437x(05)80196-0 czmv6itq 0.680994 Rice_1992, Lamb_1991
24 Madhugiri_2016 Chapter Four Coronavirus cis-Acting RNA Elements Madhugiri, R.; Fricke, M.; Marz, M.; Ziebuhr, J. 2016 2016-12-31 PMC N PMC7112319 27712622.0 10.1016/bs.aivir.2016.08.007 x43pp3fw 0.678608 Rice_1992, Lamb_1991, Stork_2011 Madhugiri_2014
25 Piotrowski_2007 Production of Coronavirus Nonstructural Proteins in Soluble Form for Crystallization Piotrowski, Yvonne; Ponnusamy, Rajesh; Glaser, Stephanie; Daabach, Anniken; Moll, Ralf; Hilgenfeld, Rolf 2007 2007-11-28 PMC N PMC7121525 19057878.0 10.1007/978-1-59745-181-9_13 0hfku8o4 0.669050 Rice_1992, Stork_2011
26 Nicholson_2014 Functional long-range RNA–RNA interactions in positive-strand RNA viruses Nicholson, Beth L.; White, K. Andrew 2014 2014-06-16 PMC N PMC7097572 24931042.0 10.1038/nrmicro3288 3jijeemg 0.663949 Rice_1992, Payne_2017, Stork_2011 Bhullar_2014, Wu_B_2009, YU_W_1995
27 Kirkegaard_1992 Genetic analysis of picornaviruses Kirkegaard, Karla 1992 1992-02-29 PMC N 1321679.0 10.1016/s0959-437x(05)80324-7 y97iyrwj 0.663325 Stork_2011, Rice_1992, Payne_2017
28 Stork_2011 RNA chaperone activity of the tombusviral p33 replication protein facilitates initiation of RNA synthesis by the viral RdRp in vitro Stork, Jozsef; Kovalev, Nikolay; Sasvari, Zsuzsanna; Nagy, Peter D. 2011 2011-01-20 PMC N 21071052.0 10.1016/j.virol.2010.10.015 x8pkgsk1 0.656455 Pong_2011, Rice_1992
29 Sztuba-Solińska_2011 Subgenomic messenger RNAs: Mastering regulation of (+)-strand RNA virus life cycle Sztuba-Solińska, Joanna; Stollar, Victor; Bujarski, Jozef J. 2011 2011-04-10 PMC N PMC7111999 21377709.0 10.1016/j.virol.2011.02.007 g410mavp 0.652042 Stork_2011, Rice_1992 Bhullar_2014, Adams_2003
30 Modrow_2013 Viruses with Single-Stranded, Positive-Sense RNA Genomes Modrow, Susanne; Falke, Dietrich; Truyen, Uwe; Schätzl, Hermann 2013 2013-08-12 PMC N PMC7169642 10.1007/978-3-642-20718-1_14 gqvwiy5h 0.651647 Rice_1992, Ryu_W_2017, Stork_2011
31 Edgil_2006 End-to-end communication in the modulation of translation by mammalian RNA viruses Edgil, Dianna; Harris, Eva 2006 2006-07-31 PMC N 16307817.0 10.1016/j.virusres.2005.10.012 nwm6hmvv 0.633771 Rice_1992, Stork_2011
32 Lomonossoff_2008 Cowpea Mosaic Virus Lomonossoff, G.P. 2008 2008-12-31 PMC N PMC7149649 10.1016/b978-012374410-4.00562-8 8yvpr8fc 0.617383 Ryu_W_2017, Rice_1992, Modrow_2013 Goldberg_1991
33 Sivakumaran_1999 RNA sequence and secondary structural determinants in a minimal viral promoter that directs replicase recognition and initiation of genomic plus-strand RNA synthesis 1 1 Edited by D. E. Draper Sivakumaran, K; Kim, Chul-Hyun; Tayon, Robert; Kao, C.Cheng 1999 1999-12-03 PMC N 10610788.0 10.1006/jmbi.1999.3297 cssgzvus 0.609610 Stork_2011, Rice_1992, Banerjee_2001
34 Castro_2005 Incorporation fidelity of the viral RNA-dependent RNA polymerase: a kinetic, thermodynamic and structural perspective Castro, Christian; Arnold, Jamie J.; Cameron, Craig E. 2005 2005-02-28 PMC N PMC7125856 15649560.0 10.1016/j.virusres.2004.11.004 9c8dj9j7 0.608232 Stork_2011, Rice_1992, Payne_2017, Lin_X_2015 Bhullar_2014
35 Comas-Garcia_2019 Packaging of Genomic RNA in Positive-Sense Single-Stranded RNA Viruses: A Complex Story Comas-Garcia, Mauricio 2019 2019-03-13 COMM-USE N PMC6466141 30871184.0 10.3390/v11030253 koo0d6g9 0.607795 Stork_2011, Rice_1992, Payne_2017 Bhullar_2014
36 Westhof_1992 RNA pseudoknots Westhof, Eric; Jaeger, Luc 1992 1992-06-30 PMC N PMC7144347 10.1016/0959-440x(92)90221-r s32d3di2 0.599035 Martínez-Salas_2008, Wu_B_2009, Rice_1992, Stork_2011
37 Kovalev_2012 A Co-Opted DEAD-Box RNA Helicase Enhances Tombusvirus Plus-Strand Synthesis Kovalev, Nikolay; Pogany, Judit; Nagy, Peter D. 2012 2012-02-16 COMM-USE N PMC3280988 22359508.0 10.1371/journal.ppat.1002537 jhetyd9t 0.593635 Stork_2011 Sasvari_2011, Li_Z_2009
38 Sasvari_2011 Synergistic Roles of Eukaryotic Translation Elongation Factors 1Bγ and 1A in Stimulation of Tombusvirus Minus-Strand Synthesis Sasvari, Zsuzsanna; Izotova, Lara; Kinzy, Terri Goss; Nagy, Peter D. 2011 2011-12-15 COMM-USE N PMC3240602 22194687.0 10.1371/journal.ppat.1002438 tkfozwpf 0.591634 Stork_2011 Li_Z_2009
39 Samuel_1989 Polycistronic Animal Virus mRNAs Samuel, Charles E. 1989 1989-12-31 PMC N 2505328.0 10.1016/s0079-6603(08)60697-2 65hqvwg9 0.588933 Lamb_1991, Rice_1992, Payne_2017, Auewarakul_2005 Tzeng_2006
40 Dinman_1998 Translating old drugs into new treatments: ribosomal frameshifting as a target for antiviral agents Dinman, Jonathan D; Ruiz-Echevarria, Maria J; Peltz, Stuart W 1998 1998-04-01 PMC N PMC7127214 9586242.0 10.1016/s0167-7799(97)01167-0 wqi4z0ne 0.582804 Rice_1992, Stork_2011
41 Li_Z_2009 Translation Elongation Factor 1A is a component of the tombusvirus replicase complex and affects the stability of the p33 replication co-factor Li, Zhenghe; Pogany, Judit; Panavas, Tadas; Xu, Kai; Esposito, Anthony M.; Kinzy, Terri Gross; Nagy, Peter D. 2009 2009-03-01 PMC N PMC2785496 19131084.0 10.1016/j.virol.2008.11.041 06qfbvlr 0.575889 Stork_2011, Rice_1992 Sasvari_2011
42 Giegé_1993 The TYMV tRNA-like structure Giegé, R; Florentz, C; Dreher, TW 1993 1993-12-31 PMC N PMC7130797 8268257.0 10.1016/0300-9084(93)90063-x 8z0xypmf 0.568763 Martínez-Salas_2008, Gorbalenya_1988, Stork_2011 Gopinath_2015
43 Roux_1991 Effects of Defective Interfering Viruses on Virus Replication and Pathogenesis In Vitro and In Vivo Roux, Laurent; Simon, Anne E.; Holland, John J. 1991 1991-12-31 PMC N 1957718.0 10.1016/s0065-3527(08)60279-1 e4e0jt5s 0.562646 Rice_1992, Auewarakul_2005, Ryu_W_2017, Payne_2017 Makino_1988, Tzeng_2006
44 Chetverin_1997 Nonhomologous RNA Recombination in a Cell-Free System: Evidence for a Transesterification Mechanism Guided by Secondary Structure Chetverin, Alexander B; Chetverina, Helena V; Demidenko, Alexander A; Ugarov, Victor I 1997 1997-02-21 PMC N 9038341.0 10.1016/s0092-8674(00)81890-5 8oy18apx 0.559247 Stork_2011, Rice_1992, Payne_2017, Lin_X_2015
45 Furuichi_2000 Viral and cellular mRNA capping: Past and prospects Furuichi, Yasuhiro; Shatkin, Aaron J 2000 2000-12-31 PMC N 11050942.0 10.1016/s0065-3527(00)55003-9 syu4nnf7 0.556820 Krause_1987 Byszewska_2015, Chen_2016
46 Selisko_2018 Structural and Functional Basis of the Fidelity of Nucleotide Selection by Flavivirus RNA-Dependent RNA Polymerases Selisko, Barbara; Papageorgiou, Nicolas; Ferron, François; Canard, Bruno 2018 2018-01-30 COMM-USE N PMC5850366 29385764.0 10.3390/v10020059 e993uavn 0.550000 Stork_2011, Rice_1992, Payne_2017, Gorbalenya_1988 Zhou_2011, Masante_2015
47 Herold_2001 Poliovirus RNA Replication Requires Genome Circularization through a Protein–Protein Bridge Herold, Jens; Andino, Raul 2001 2001-03-01 PMC N PMC7129834 11463383.0 10.1016/s1097-2765(01)00205-2 gs8s7kn8 0.548262 Stork_2011, Pong_2011 Bhullar_2014, YU_W_1995
48 Sevajol_2014 Insights into RNA synthesis, capping, and proofreading mechanisms of SARS-coronavirus Sevajol, Marion; Subissi, Lorenzo; Decroly, Etienne; Canard, Bruno; Imbert, Isabelle 2014 2014-12-19 PMC N PMC7114481 25451065.0 10.1016/j.virusres.2014.10.008 i2f5ksux 0.537667 Stork_2011, Rice_1992, Ryu_W_2017 Chen_2016
49 Ziebuhr_2005 The Coronavirus Replicase Ziebuhr, J. 2005 2005-01-01 PMC N PMC7121973 15609509.0 10.1007/3-540-26765-4_3 l6awxamv 0.534271 Stork_2011, Rice_1992 Tzeng_2006
50 Sasvari_2009 Inhibition of RNA Recruitment and Replication of an RNA Virus by Acridine Derivatives with Known Anti-Prion Activities Sasvari, Zsuzsanna; Bach, Stéphane; Blondel, Marc; Nagy, Peter D. 2009 2009-10-13 COMM-USE N PMC2757906 19823675.0 10.1371/journal.pone.0007376 a0df1fhw 0.526311 Stork_2011, Rice_1992
51 Okuno_2013 Chapter Two Molecular Biology and Epidemiology of Dianthoviruses Okuno, Tetsuro; Hiruki, Chuji 2013 2013-12-31 PMC N PMC7150339 23809920.0 10.1016/b978-0-12-407698-3.00002-8 pz5hj1r9 0.523976 Rice_1992, Ryu_W_2017 Goldberg_1991
52 Somers_2013 A perspective on mammalian upstream open reading frame function Somers, Joanna; Pöyry, Tuija; Willis, Anne E. 2013 2013-08-31 PMC N 10.1016/j.biocel.2013.04.020 dtnysugh 0.523456 Martínez-Salas_2008
53 Xia_H_2015 Human Enterovirus Nonstructural Protein 2C(ATPase) Functions as Both an RNA Helicase and ATP-Independent RNA Chaperone Xia, Hongjie; Wang, Peipei; Wang, Guang-Chuan; Yang, Jie; Sun, Xianlin; Wu, Wenzhe; Qiu, Yang; Shu, Ting; Zhao, Xiaolu; Yin, Lei; Qin, Cheng-Feng; Hu, Yuanyang; Zhou, Xi 2015 2015-07-28 COMM-USE N PMC4517893 26218680.0 10.1371/journal.ppat.1005067 wo462anq 0.518576 Stork_2011, Pong_2011
54 Miras_2017 Non-canonical Translation in Plant RNA Viruses Miras, Manuel; Miller, W. Allen; Truniger, Verónica; Aranda, Miguel A. 2017 2017-04-06 COMM-USE N PMC5382211 28428795.0 10.3389/fpls.2017.00494 2t09zqqi 0.518301 Lamb_1991, Rice_1992, Stork_2011 Firth_2012, Sasvari_2011
55 Mendes_2018 Alphavirus Nucleocapsid Packaging and Assembly Mendes, Adriano; Kuhn, Richard J. 2018 2018-03-20 COMM-USE N PMC5869531 29558394.0 10.3390/v10030138 5h8mtupm 0.513194
56 Brierley_2007 Viral RNA pseudoknots: versatile motifs in gene expression and replication Brierley, Ian; Pennell, Simon; Gilbert, Robert J. C. 2007 2007-01-01 None N PMC7096944 17632571.0 10.1038/nrmicro1704 ag7b9b00 0.509327 Martínez-Salas_2008, Staple_2005, Liu_Y_2009
57 Popow_2012 Diversity and roles of (t)RNA ligases Popow, Johannes; Schleiffer, Alexander; Martinez, Javier 2012 2012-03-17 PMC N PMC3400036 22426497.0 10.1007/s00018-012-0944-2 clyc1va2 0.501524 Stork_2011 Xia_H_2015
58 Chen_2016 Molecular mechanisms of coronavirus RNA capping and methylation Chen, Yu; Guo, Deyin 2016 2016-02-02 PMC N PMC7091378 26847650.0 10.1007/s12250-016-3726-4 eljk918r 0.490753 Rice_1992, Stork_2011 Gopinath_2015, Byszewska_2015
59 Ugarov_2008 Functional Circularity of Legitimate Qβ Replicase Templates Ugarov, Victor I.; Chetverin, Alexander B. 2008 2008-06-06 PMC N 18466922.0 10.1016/j.jmb.2008.03.074 lhchx3jt 0.485237 Stork_2011, Lai_M_2005
60 Väre_2017 Chemical and Conformational Diversity of Modified Nucleosides Affects tRNA Structure and Function Väre, Ville Y. P.; Eruysal, Emily R.; Narendran, Amithi; Sarachan, Kathryn L.; Agris, Paul F. 2017 2017-03-16 COMM-USE N PMC5372741 28300792.0 10.3390/biom7010029 xva1qkrd 0.481365 Staple_2005, Martínez-Salas_2008, Stork_2011 Byszewska_2015, Kolchanov_1996
61 Wu_B_2013 Global Organization of a Positive-strand RNA Virus Genome Wu, Baodong; Grigull, Jörg; Ore, Moriam O.; Morin, Sylvie; White, K. Andrew 2013 2013-05-23 COMM-USE N PMC3662671 23717202.0 10.1371/journal.ppat.1003363 vx0nc8io 0.478247 Wu_B_2009, Martínez-Salas_2008, Rice_1992 Adams_2003
62 Nedialkova_2010 Arterivirus Nsp1 Modulates the Accumulation of Minus-Strand Templates to Control the Relative Abundance of Viral mRNAs Nedialkova, Danny D.; Gorbalenya, Alexander E.; Snijder, Eric J. 2010 2010-02-19 COMM-USE N PMC2824749 20174607.0 10.1371/journal.ppat.1000772 6g55l35h 0.475823 Rice_1992, Stork_2011 Tzeng_2006
63 Kovalev_2014 The Expanding Functions of Cellular Helicases: The Tombusvirus RNA Replication Enhancer Co-opts the Plant eIF4AIII-Like AtRH2 and the DDX5-Like AtRH5 DEAD-Box RNA Helicases to Promote Viral Asymmetric RNA Replication Kovalev, Nikolay; Nagy, Peter D. 2014 2014-04-17 COMM-USE N PMC3990711 24743583.0 10.1371/journal.ppat.1004051 t21l6i3f 0.474323 Stork_2011, Rice_1992, Pong_2011 Li_Z_2009
64 Byszewska_2015 RNA methyltransferases involved in 5′ cap biosynthesis Byszewska, Magdalena; Śmietański, Mirosław; Purta, Elżbieta; Bujnicki, Janusz M 2015 2015-01-27 NONCOMM N PMC4615557 25626080.0 10.1080/15476286.2015.1004955 sz2531mv 0.474088 Martínez-Salas_2008, Stork_2011, Krause_1987 Gopinath_2015, Chen_2016
65 Hatfield_1992 Translational Suppression in Retroviral GENE Expression Hatfield, Dolph L.; Levin, Judith G.; Rein, Alan; Oroszlan, Stephen 1992 1992-12-31 PMC N 1575083.0 10.1016/s0065-3527(08)60037-8 hy8zihx6 0.468328 Rice_1992 Nowak_1984, Tzeng_2006
66 Brierley_2003 V, 2.Ribosomal frameshifting in astroviruses Brierley, Ian; Vidakovic, Marijana 2003 2003-12-31 PMC N PMC7133818 10.1016/s0168-7069(03)09035-9 wjcp0asf 0.466306
67 Taiaroa_2020 Direct RNA sequencing and early evolution of SARS-CoV-2 George Taiaroa; Daniel Rawlinson; Leo Featherstone; Miranda Pitt; Leon Caly; Julian Druce; Damian Purcell; Leigh Harty; Thomas Tran; Jason Roberts; Mike Catton; Deborah Williamson; Lachlan Coin; Sebastian Duchene 2020 2020-03-07 BioRxiv Y 10.1101/2020.03.05.976167 x3hr1y6o 0.459909
68 Trifonov_1992 Recognition of correct reading frame by the ribosome Trifonov, E.N. 1992 1992-04-30 PMC N PMC7131330 1637861.0 10.1016/0300-9084(92)90113-s j3q4k5ol 0.459909 Kozak_1994, Martínez-Salas_2008 Oh_S_1993, Powell_2011, Caliskan_2014
69 Agranovsky_1996 Principles of Molecular Organization, Expression, and Evolution of Closteroviruses: Over The Barriers Agranovsky, A.A. 1996 1996-12-31 PMC N 8895832.0 10.1016/s0065-3527(08)60735-6 0kcujnfa 0.456344 Rice_1992, Ryu_W_2017, Payne_2017 Gorbalenya_2006
70 Masters_2005 Coronavirus Reverse Genetics by Targeted RNA Recombination Masters, P. S.; Rottier, P. J. M. 2005 2005-01-01 PMC N PMC7122231 15609511.0 10.1007/3-540-26765-4_5 eh4dij8h 0.448927 Rice_1992 Tzeng_2006
71 Ferron_2012 The viral RNA capping machinery as a target for antiviral drugs Ferron, François; Decroly, Etienne; Selisko, Barbara; Canard, Bruno 2012 2012-10-31 PMC N PMC7114304 22841701.0 10.1016/j.antiviral.2012.07.007 66kw1ubk 0.437445 Stork_2011, Rice_1992 Chen_2016, Byszewska_2015, Decroly_2011
72 Mindich_1995 Heterologous recombination in the segmented dsRNA genome of bacteriophage Φ6 Mindich, Leonard 1995 1995-02-28 PMC N PMC7129777 10.1016/s1044-5773(05)80011-3 6f3e87yk 0.435954 Rice_1992, Stork_2011, Payne_2017, Auewarakul_2005 Tzeng_2006, Adams_2003
73 Decroly_2017 Biochemical principles and inhibitors to interfere with viral capping pathways Decroly, Etienne; Canard, Bruno 2017 2017-06-30 PMC N 28527860.0 10.1016/j.coviro.2017.04.003 hj2b1wc4 0.434892 Stork_2011, Rice_1992 Sasvari_2009, Chen_2016
74 Yang_2015 The structure and functions of coronavirus genomic 3′ and 5′ ends Yang, Dong; Leibowitz, Julian L. 2015 2015-08-03 None N PMC4476908 25736566.0 10.1016/j.virusres.2015.02.025 ihinqmig 0.434857 Rice_1992, Payne_2017 Gao_F_2012
75 Leppek_2017 Functional 5′ UTR mRNA structures in eukaryotic translation regulation and how to find them Leppek, Kathrin; Das, Rhiju; Barna, Maria 2017 2017-11-22 PMC N PMC5820134 29165424.0 10.1038/nrm.2017.103 38ba3jk2 0.427434 Lamb_1991, Martínez-Salas_2008 Byszewska_2015, Sarnowska_2007, Sasvari_2011
76 Yun_S_2015 Bacterial Artificial Chromosomes: A Functional Genomics Tool for the Study of Positive-strand RNA Viruses Yun, Sang-Im; Song, Byung-Hak; Kim, Jin-Kyoung; Lee, Young-Min 2015 2015-12-29 NONCOMM N PMC4780872 26780115.0 10.3791/53164 2se4d1yp 0.420573 Rice_1992 Nowak_1984, Satyanarayana_2003
77 Firth_2012 Non-canonical translation in RNA viruses Firth, Andrew E.; Brierley, Ian 2012 2012-07-23 COMM-USE N PMC3542737 22535777.0 10.1099/vir.0.042499-0 o5jo69um 0.420417 Lamb_1991, Rice_1992, Stork_2011 Bhullar_2014
78 Garcia_2014 Nonsense-Mediated Decay Serves as a General Viral Restriction Mechanism in Plants Garcia, Damien; Garcia, Shahinez; Voinnet, Olivier 2014 2014-09-10 PMC N 25155460.0 10.1016/j.chom.2014.08.001 xkcqo86y 0.416886 Rice_1992, Stork_2011 Sasvari_2009
79 Beerens_2007 De Novo Initiation of RNA Synthesis by the Arterivirus RNA-Dependent RNA Polymerase Beerens, Nancy; Selisko, Barbara; Ricagno, Stefano; Imbert, Isabelle; van der Zanden, Linda; Snijder, Eric J.; Canard, Bruno 2007 2007-05-30 None N PMC1951334 17537850.0 10.1128/jvi.00564-07 7g1lrzcj 0.416259 Stork_2011, Rice_1992 Tzeng_2006
80 Dunkle_2015 Mechanisms of mRNA frame maintenance and its subversion during translation of the genetic code Dunkle, Jack A.; Dunham, Christine M. 2015 2015-07-01 PMC N PMC4458409 25708857.0 10.1016/j.biochi.2015.02.007 0v8yd5qj 0.411149 Lamb_1991, Morikawa_1992, Cattaneo_1989, Rodnina_2020 Powell_2011, Gopinath_2015
81 Lai_M_1996 Recombination in large RNA viruses: Coronaviruses Lai, Michael M.C. 1996 1996-12-31 PMC N 10.1006/smvy.1996.0046 2s14knw6 0.409253 Rice_1992, Stork_2011, Payne_2017, Auewarakul_2005
82 Kazakov_2015 Hepatitis C Virus RNA Replication Depends on Specific Cis- and Trans-Acting Activities of Viral Nonstructural Proteins Kazakov, Teymur; Yang, Feng; Ramanathan, Harish N.; Kohlway, Andrew; Diamond, Michael S.; Lindenbach, Brett D. 2015 2015-04-13 COMM-USE N PMC4395149 25875808.0 10.1371/journal.ppat.1004817 gqrsogqf 0.406449 Stork_2011, Pong_2011, Rice_1992
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84 Galán_2009 Host cell proteins interacting with the 3′ end of TGEV coronavirus genome influence virus replication Galán, Carmen; Sola, Isabel; Nogales, Aitor; Thomas, Benjamin; Akoulitchev, Alexandre; Enjuanes, Luis; Almazán, Fernando 2009 2009-09-01 PMC N PMC7118768 19580983.0 10.1016/j.virol.2009.06.006 6ghod65y 0.403514 Stork_2011, Pong_2011 Tzeng_2006, Bhullar_2014
85 Madhugiri_2014 RNA structure analysis of alphacoronavirus terminal genome regions Madhugiri, Ramakanth; Fricke, Markus; Marz, Manja; Ziebuhr, John 2014 2014-12-19 PMC N PMC7114417 25307890.0 10.1016/j.virusres.2014.10.001 7de21oaq 0.403367 Rice_1992, Payne_2017, Stork_2011 Adams_2003
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87 van_Ooij_2006 Polyadenylation of genomic RNA and initiation of antigenomic RNA in a positive-strand RNA virus are controlled by the same cis-element van Ooij, Mark J. M.; Polacek, Charlotta; Glaudemans, Dirk H. R. F.; Kuijpers, Judith; van Kuppeveld, Frank J. M.; Andino, Raul; Agol, Vadim I.; Melchers, Willem J. G. 2006 2006-05-31 PMC N PMC1474053 16738134.0 10.1093/nar/gkl349 4s71mh8j 0.389227 Stork_2011, Rice_1992, Payne_2017 Bhullar_2014
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89 Tonzi_2018 Translesion polymerase kappa-dependent DNA synthesis underlies replication fork recovery Tonzi, Peter; Yin, Yandong; Lee, Chelsea Wei Ting; Rothenberg, Eli; Huang, Tony T 2018 2018-11-13 COMM-USE N PMC6251625 30422114.0 10.7554/elife.41426 ivl1e9vd 0.387145 Stork_2011 Sasvari_2011
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98 Arkhipova_2017 Giant Reverse Transcriptase-Encoding Transposable Elements at Telomeres Arkhipova, Irina R.; Yushenova, Irina A.; Rodriguez, Fernando 2017 2017-05-30 None N PMC5850863 28575409.0 10.1093/molbev/msx159 tkdh740c 0.375526 Lamb_1991, Hyde_2015, Gorbalenya_1988, Morikawa_1992, Liu_Y_2009 Adams_2003
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100 Hyde_2015 The 5′ and 3′ ends of alphavirus RNAs – Non-coding is not non-functional Hyde, Jennifer L.; Chen, Rubing; Trobaugh, Derek W.; Diamond, Michael S.; Weaver, Scott C.; Klimstra, William B.; Wilusz, Jeffrey 2015 2015-08-03 None N PMC4654126 25630058.0 10.1016/j.virusres.2015.01.016 1oqxmzze 0.367517 Lamb_1991, Rice_1992 Gao_F_2012
101 Masaki_2015 miR-122 Stimulates Hepatitis C Virus RNA Synthesis by Altering the Balance of Viral RNAs Engaged in Replication versus Translation Masaki, Takahiro; Arend, Kyle C.; Li, You; Yamane, Daisuke; McGivern, David R.; Kato, Takanobu; Wakita, Takaji; Moorman, Nathaniel J.; Lemon, Stanley M. 2015 2015-02-11 None N PMC4326553 25662750.0 10.1016/j.chom.2014.12.014 pmdera3v 0.366706 Stork_2011 Masante_2015, Bhullar_2014
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109 Chen_2017 The Functional Roles of the Cis-acting Elements in Bamboo mosaic virus RNA Genome Chen, I-Hsuan; Huang, Ying-Wen; Tsai, Ching-Hsiu 2017 2017-04-13 COMM-USE N PMC5390519 28450857.0 10.3389/fmicb.2017.00645 tu50ab1b 0.358988 Stork_2011, Rice_1992, Chen_2013 Bhullar_2014, Tzeng_2006
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