Topic 02 -- Abstracts with Biological Entities (English) - 75 Topics / Sub-Topic Model 19 - 15 Topics

cite ad title authors publish year publish time dataset abstract mentions covid pmcid pubmed id doi cord uid topic weight Similarity scispacy Similarity specter
1 Britton_1989 Sequence of the coding regions from the 3.0 kb and 3.9 kb mRNA: Subgenomic species from a virulent isolate of transmissible gastroenteritis virus Britton, P.; Otin, C. Lopez; Alonso, J. M. Martin; Parra, F. 1989 1989-01-01 PMC N PMC7086989 2546515.0 10.1007/bf01311354 cljnoklc 0.987384 Tohya_1991, Brown_1984, Luytjes_1988, Wurch_1991 Nowak_1984
2 Wesley_1989 Nucleotide sequence of coronavirus TGEV genomic RNA: evidence for 3 mRNA species between the peplomer and matrix protein genes Wesley, Ronald D.; Cheung, Andrew K.; Michael, David D.; Woods, Roger D. 1989 1989-06-30 PMC N PMC7134121 2549745.0 10.1016/0168-1702(89)90008-7 gkhdfd4h 0.977786 Krause_1987, Lamb_1991, Luytjes_1988, Morikawa_1992, Jendrach_2014 Goldberg_1991
3 Yamanaka_1998 Nucleotide Sequence of the Inter-Structural Gene Region of Feline Infectious Peritonitis Virus Yamanaka, Miles; Crisp, Tracey; Brown, Rhonda; Dale, Beverly 1998 1998-01-01 PMC N PMC7088554 9654687.0 10.1023/a:1008099209942 y8xvh6hs 0.976569 Luytjes_1988, Kocherhans_2001, Morikawa_1992, Firth_2009 De_Groot_1988
4 Boursnell_1984 Sequence of the membrane protein gene from avian coronavirus IBV Boursnell, M.E.G.; Brown, T.D.K.; Binns, M.M. 1984 1984-12-31 PMC N PMC7134033 6099661.0 10.1016/0168-1702(84)90019-4 f9otvby6 0.933631 Luytjes_1988, Firth_2009, Krause_1987, Morikawa_1992 Ling_1995
5 Lin_T_2004 Complete sequences of 3′ end coding region for structural protein genes of turkey coronavirus Lin, Tsang Long; Loa, Chien Chang; Wu, Ching Ching 2004 2004-11-30 PMC N PMC7114097 15522448.0 10.1016/j.virusres.2004.06.003 7bp0ujqn 0.928718 Luytjes_1988, Brown_1984, Tohya_1991, Kocherhans_2001 Goldberg_1991, Lapps_1987
6 Thomas_1988 Two mRNAs that differ by two nontemplated nucleotides encode the amino coterminal proteins P and V of the paramyxovirus SV5 Thomas, Sheila M.; Lamb, Robert A.; Paterson, Reay G. 1988 1988-09-09 PMC N PMC7133244 3044614.0 10.1016/s0092-8674(88)91285-8 tysyq6o4 0.915311 Luytjes_1988, Firth_2009, Morikawa_1992
7 Luytjes_1988 Sequence of mouse hepatitis virus A59 mRNA 2: Indications for RNA recombination between coronaviruses and influenza C virus Luytjes, Willem; Bredenbeek, Peter J.; Noten, Ans F.H.; Horzinek, Marian C.; Spaan, Willy J.M. 1988 1988-10-31 PMC N PMC7118983 2845655.0 10.1016/0042-6822(88)90512-0 88mgoxz6 0.912762 Morikawa_1992, Firth_2009, Tohya_1991, Toshio_1989
8 Rott_1991 Comparison of the 5′ and 3′ termini of tomato ringspot virus RNA1 and RNA2: Evidence for RNA recombination Rott, M.E.; Tremaine, J.H.; Rochon, D.M. 1991 1991-11-30 PMC N 1926788.0 10.1016/0042-6822(91)90801-h ia04jc9j 0.902044 Luytjes_1988, Firth_2009, Morikawa_1992, Lamb_1991
9 Boursnell_1984 Sequencing of coronavirus IBV genomic RNA: a 195-base open reading frame encoded by mRNA B Boursnell, M.E.G.; Brown, T.D.K. 1984 1984-08-31 PMC N PMC7157916 6092234.0 10.1016/0378-1119(84)90169-0 t1nfyzf5 0.899819 Lamb_1991, Brown_1984, Firth_2009, Krause_1987 Nowak_1984
10 Liu_D_1992 Identification of two new polypeptides encoded by mRNA5 of the coronavirus infectious bronchitis virus Liu, D.X.; Inglis, S.C. 1992 1992-01-31 PMC N PMC7130825 1309280.0 10.1016/0042-6822(92)90094-6 3tpyj04y 0.883113 Rice_1992, Lamb_1991, Stork_2011 Tzeng_2006
11 Britton_2006 Sequence of the nucleoprotein gene from a virulent British field isolate of transmissible gastroenteritis virus and its expression in Saccharomyces cerevisiae Britton, P.; Cármenes, R. S.; Page, K. W.; Garwes, D. J.; Parral, F. 2006 2006-10-27 PMC N PMC7168467 28776791.0 10.1111/j.1365-2958.1988.tb00010.x eqzs01au 0.859171 Wurch_1991, Vennema_1991, Luytjes_1988, Leibowitz_1988
12 Lapps_1987 Sequence analysis of the bovine coronavirus nucleocapsid and matrix protein genes Lapps, William; Hogue, Brenda G.; Brian, David A. 1987 1987-03-31 PMC N PMC7130558 3029965.0 10.1016/0042-6822(87)90312-6 mj9ea464 0.858703 Luytjes_1988, Firth_2009, Morikawa_1992, Tohya_1991, Toshio_1989 Goldberg_1991, Kapke_1986
13 Lin_D_1991 Evolutionary relatedness of the predicted gene product of RNA segment 2 of the Tick-Borne Dhori virus and the PB1 polymerase gene of influenza viruses Lin, Debby A.; Roychoudhury, Sonali; Palese, Peter; Clay, William C.; Fuller, Frederick J. 1991 1991-05-31 PMC N PMC7131129 2024457.0 10.1016/0042-6822(91)90641-n a647hwu9 0.850976 Luytjes_1988, Tohya_1991, Gorbalenya_1988, Firth_2009 Nowak_1984
14 Kapke_1986 Sequence analysis of the porcine transmissible gastroenteritis coronavirus nucleocapsid protein gene Kapke, Paul A.; Brian, David A. 1986 1986-05-31 PMC N PMC7131278 3008432.0 10.1016/0042-6822(86)90102-9 y3hgnb6u 0.846616 Luytjes_1988, Morikawa_1992, Firth_2009, Toshio_1989 Lapps_1987, Goldberg_1991
15 Lee_C_2000 Evidence of genetic diversity generated by recombination among avian coronavirus IBV Lee, C.-W.; Jackwood, M. W. 2000 2000-01-01 PMC N PMC7087113 11087096.0 10.1007/s007050070044 msk9p1yy 0.839271 Krause_1987, Auewarakul_2005, Luytjes_1988, Firth_2009
16 Carter_1992 Identification and sequence determination of the capsid protein gene of feline calicivirus Carter, M. J.; Milton, I. D.; Turner, P. C.; Meanger, J.; Bennett, M.; Gaskell, R. M. 1992 1992-01-01 PMC N PMC7086951 1731695.0 10.1007/bf01317185 zgqivufm 0.837250 Luytjes_1988, Morikawa_1992, Firth_2009, Hatfield_1990, Toshio_1989 Goldberg_1991
17 Britton_1991 The cloning and sequencing of the virion protein genes from a British isolate of porcine respiratory coronavirus: comparison with transmissible gastroenteritis virus genes Britton, Paul; Mawditt, Karen L.; Page, Kevin W. 1991 1991-11-30 PMC N PMC7133898 1662846.0 10.1016/0168-1702(91)90032-q lqbj0lrf 0.832714 Luytjes_1988, Kocherhans_2001, Yamanaka_1998, Tohya_1991 Nowak_1984
18 Lee_H_1991 The complete sequence (22 kilobases) of murine coronavirus gene 1 encoding the putative proteases and RNA polymerase Lee, Han-Jung; Shieh, Chien-Kou; Gorbalenya, Alexander E.; Koonin, Eugene V.; La Monica, Nicola; Tuler, Jeremy; Bagdzhadzhyan, Anush; Lai, Michael M.C. 1991 1991-02-28 PMC N PMC7131164 1846489.0 10.1016/0042-6822(91)90071-i bam3pa70 0.829442 Luytjes_1988, Firth_2009, Morikawa_1992, Lamb_1991 Firth_2009
19 Suzuki_1992 Rice dwarf phytoreovirus segment S12 transcript is tricistronic in Vitro Suzuki, Nobuhiro; Sugawara, Mikiko; Kusano, Tomonobu 1992 1992-12-31 PMC N 1448932.0 10.1016/0042-6822(92)90279-x cwcpsq65 0.822685 Luytjes_1988, Firth_2009, Morikawa_1992, Lamb_1991, Hatfield_1990 Goldberg_1991
20 Cao_J_2008 Complete nucleotide sequence of polyprotein gene 1 and genome organization of turkey coronavirus Cao, Jianzhong; Wu, Ching-Ching; Lin, Tsang Long 2008 2008-09-30 PMC N PMC7114415 18514348.0 10.1016/j.virusres.2008.04.015 momzoghp 0.811760 Luytjes_1988, Kocherhans_2001, Tohya_1991 Lin_T_2004, Grötzinger_1996
21 Ling_1995 Sequence and in vitro expression of the phosphoprotein gene of avian pneumovirus Ling, Roger; Davis, Philip J.; Qingzhong, Yu; Wood, Carla M.; Pringle, Craig R.; Cavanagh, David; Easton, Andrew J. 1995 1995-05-31 PMC N 7653102.0 10.1016/0168-1702(95)00008-e cefl4zot 0.808225 Luytjes_1988, Firth_2009, Tohya_1991 Goldberg_1991, Nowak_1984
22 Tohya_1991 Sequence analysis of the 3′-end of feline calicivirus genome Tohya, Yukinobu; Taniguchi, Yasuko; Takahashi, Eiji; Utagawa, Etsuko; Takeda, Naokazu; Miyamura, Kikuko; Yamazaki, Shudo; Mikami, Takeshi 1991 1991-08-31 PMC N 1853578.0 10.1016/0042-6822(91)91016-a l761o6n3 0.792218 Luytjes_1988, Firth_2009, Morikawa_1992, Toshio_1989
23 Yu_Q_1992 Cloning and sequencing of the matrix protein (M) gene of turkey rhinotracheitis virus reveal a gene order different from that of respiratory syncytial virus Yu, Q.; Davis, P.J.; Li, J.; Cavanagh, D. 1992 1992-02-29 PMC N PMC7131020 1733097.0 10.1016/0042-6822(92)90007-c dgwpwiii 0.791875 Firth_2009
24 Liu_D_1991 A polycistronic mRNA specified by the coronavirus infectious bronchitis virus Liu, D.X.; Cavanagh, D.; Green, P.; Inglis, S.C. 1991 1991-10-31 PMC N PMC7131956 1653486.0 10.1016/0042-6822(91)90423-9 k22fdsuk 0.791728 Lamb_1991, Jendrach_2014, Morikawa_1992 Tzeng_2006
25 De_Groot_1988 Sequence analysis of the 3′ end of the feline coronavirus FIPV 79-1146 genome: Comparison with the genome of porcine coronavirus TGEV reveals large insertions De Groot, Raoul J.; Andeweg, Arno C.; Horzinek, Marian C.; Spaan, Willy J.M. 1988 1988-12-31 PMC N PMC7130511 3201747.0 10.1016/0042-6822(88)90097-9 i6vuhaiv 0.781810 Luytjes_1988, Morikawa_1992, Yamanaka_1998, Firth_2009 Yamanaka_1998
26 Willcocks_1993 Identification and sequence determination of the capsid protein gene of human astrovirus serotype 1 Willcocks, Margaret M.; Carter, Michael J. 1993 1993-11-15 PMC N 8293952.0 f2jf7byg 0.772245 Luytjes_1988, Jendrach_2014, Leibowitz_1988, Firth_2009 Carter_1992
27 Godeny_1990 Map location of lactate dehydrogenase-elevating virus (LDV) capsid protein (Vpl) gene Godeny, E.K.; Speicher, D.W.; Brintow, M.A. 1990 1990-08-31 PMC N 2371780.0 10.1016/0042-6822(90)90546-4 5rovh1xf 0.766643 Luytjes_1988, Firth_2009, Morikawa_1992, Tohya_1991 Goldberg_1991
28 Goldberg_1991 Structure of the glycoprotein gene of sonchus yellow net virus, a plant rhabdovirus Goldberg, Karen-Beth; Modrell, Brett; Hillman, Bradley I.; Heaton, Louis A.; Choi, Tae-Jin; Jackson, A.O. 1991 1991-11-30 PMC N PMC7130609 1926779.0 10.1016/0042-6822(91)90750-6 x2w73spd 0.752390 Luytjes_1988, Morikawa_1992, Firth_2009, Wurch_1991 Tzeng_2006, Godeny_1990
29 Gomaa_2008 Complete genomic sequence of turkey coronavirus Gomaa, M.H.; Barta, J.R.; Ojkic, D.; Yoo, D. 2008 2008-08-31 PMC N PMC7114504 18468711.0 10.1016/j.virusres.2008.03.020 sl5zy8nj 0.739989 Yamanaka_1998, Luytjes_1988, Kocherhans_2001, Jendrach_2014, Firth_2009 Firth_2009, De_Groot_1988, Zhang_2007
30 Rasschaert_1987 Enteric coronavirus TGEV: partial sequence of the genomic RNA, its organization and expression Rasschaert, Denis; Gelfi, Jacqueline; Laude, Hubert 1987 1987-07-31 PMC N PMC7130962 2825819.0 10.1016/0300-9084(87)90178-7 pwyl57nn 0.722218 Firth_2009, Luytjes_1988, Lamb_1991, Morikawa_1992, Wurch_1991 Goldberg_1991, Lapps_1987
31 Jiang_2014 Orsay virus utilizes ribosomal frameshifting to express a novel protein that is incorporated into virions() Jiang, Hongbing; Franz, Carl J.; Wu, Guang; Renshaw, Hilary; Zhao, Guoyan; Firth, Andrew E.; Wang, David 2014 2014-02-23 None N PMC3969245 24503084.0 10.1016/j.virol.2013.12.016 v425xitn 0.698399 Rice_1992, Stork_2011 Tzeng_2006, Goldberg_1991
32 Scott_1989 Detailed structural analysis of a genome rearrangement in bovine rotavirus Scott, G.E.; Tarlow, O.; McCrae, M.A. 1989 1989-10-31 PMC N PMC7133935 2558459.0 10.1016/0168-1702(89)90033-6 3wta8lms 0.694108 Morikawa_1992, Hatfield_1990, Krause_1987, Brierley_1989 Nowak_1984, Goldberg_1991
33 Kocherhans_2001 Completion of the Porcine Epidemic Diarrhoea Coronavirus (PEDV) Genome Sequence Kocherhans, Rolf; Bridgen, Anne; Ackermann, Mathias; Tobler, Kurt 2001 2001-01-01 PMC N PMC7089135 11724265.0 10.1023/a:1011831902219 1jgqofbr 0.688744 Luytjes_1988, Morikawa_1992, Firth_2009, Lamb_1991 Goldberg_1991, Zhang_2007
34 Dasmahapatra_1985 Structure of the black beetle virus genome and its functional implications Dasmahapatra, Bimalendu; Dasgupta, Ranjit; Ghosh, Amit; Kaesberg, Paul 1985 1985-03-20 PMC N 3839022.0 10.1016/0022-2836(85)90337-7 uu57qilj 0.684686 Lamb_1991, Rice_1992, Rott_1991, Banerjee_2001, Morikawa_1992 Goldberg_1991, Tzeng_2006, White_1991
35 Toshio_1989 Sequence analysis of nucleocapsid gene and leader RNA of human coronavirus OC43 Toshio, Kamahora; Soe, Lisa H.; Lai, Michael M.C. 1989 1989-01-31 PMC N PMC7134120 2541577.0 10.1016/0168-1702(89)90048-8 vvnhktca 0.682730 Luytjes_1988, Morikawa_1992, Firth_2009, Krause_1987 Goldberg_1991
36 Tam_A_1991 Hepatitis E virus (HEV): Molecular cloning and sequencing of the full-length viral genome Tam, Albert W.; Smith, Matthew M.; Guerra, Martha E.; Huang, Chiao-Chain; Bradley, Daniel W.; Fry, Kirk E.; Reyes, Gregory R. 1991 1991-11-30 PMC N 1926770.0 10.1016/0042-6822(91)90760-9 nnefbeo6 0.678914 Firth_2009, Luytjes_1988, Morikawa_1992, Lamb_1991, Hatfield_1990 Nowak_1984
37 Leibowitz_1988 Detection of a murine coronavirus nonstructural protein encoded in a downstream open reading frame Leibowitz, Julian L.; Perlman, Stanley; Weinstock, George; Devries, James R.; Budzilowicz, Carol; Weissemann, Jane M.; Weiss, Susan R. 1988 1988-05-31 PMC N PMC7131066 2834866.0 10.1016/0042-6822(88)90631-9 uoei747i 0.669687 Wurch_1991, Vennema_1991, Jendrach_2014, Morikawa_1992 Tzeng_2006
38 Pachuk_1989 Molecular cloning of the gene encoding the putative polymerase of mouse hepatitis coronavirus, strain A59 Pachuk, Catherine J.; Bredenbeek, Peter J.; Zoltick, Philip W.; Spaan, Willy J.M.; Weiss, Susan R. 1989 1989-07-31 PMC N PMC7130916 2545027.0 10.1016/0042-6822(89)90520-5 l2akpv5b 0.669090 Krause_1987, Firth_2009, Luytjes_1988, Morikawa_1992, Wurch_1991 Nowak_1984
39 Weiss_1993 The ns 4 gene of mouse hepatitis virus (MHV), strain A 59 contains two ORFs and thus differs from ns 4 of the JHM and S strains Weiss, Susan R.; Zoltick, P. W.; Leibowitz, J. L. 1993 1993-01-01 PMC N PMC7087012 8385918.0 10.1007/bf01316905 xh66h2yd 0.666215 Luytjes_1988, Jendrach_2014, Wurch_1991, Firth_2009
40 Chevin_2015 Characterisation of Structural Proteins from Chronic Bee Paralysis Virus (CBPV) Using Mass Spectrometry Chevin, Aurore; Coutard, Bruno; Blanchard, Philippe; Dabert-Gay, Anne-Sophie; Ribière-Chabert, Magali; Thiéry, Richard 2015 2015-06-23 COMM-USE N PMC4488741 26110588.0 10.3390/v7062774 rzl03vn1 0.658026 Rice_1992, Stork_2011, Payne_2017, Gorbalenya_1988 Goldberg_1991, Tzeng_2006
41 UNKNOWN_1991 Isolation, characterization, and expression of cDNAs encoding murine alpha-mannosidase II, a Golgi enzyme that controls conversion of high mannose to complex N-glycans None 1991 1991-12-02 NONCOMM N PMC2289207 1757461.0 qrg1rtzi 0.656684 Krause_1987, Luytjes_1988, Wurch_1991
42 Schreiber_1989 Sequence analysis of the nucleocapsid protein gene of human coronavirus 229E Schreiber, Steven S.; Kamahora, Toshio; Lai, Michael M.C. 1989 1989-03-31 PMC N PMC7131124 2922924.0 10.1016/0042-6822(89)90050-0 btfz6ye8 0.655162 Luytjes_1988, Morikawa_1992, Firth_2009, Gorbalenya_1988, Rice_1992 Lapps_1987
43 Conzelmann_1993 Molecular Characterization of Porcine Reproductive and Respiratory Syndrome Virus, a Member of the Arterivirus Group Conzelmann, Karl-Klaus; Visser, Nico; Van Woensel, Peter; Thiel, Heinz-Jürgen 1993 1993-03-31 PMC N PMC7131490 8438574.0 10.1006/viro.1993.1129 ft30zevv 0.649129 Luytjes_1988, Tohya_1991, Rice_1992, Lamb_1991
44 Meulenberg_1995 Characterization of proteins encoded by ORFs 2 to 7 of Lelystad virus Meulenberg, Janneke J.M.; Petersen-Den Besten, Annelien; De Kluyver, Eric P.; Moormann, Rob J.M.; Schaaper, Wim M.M.; Wensvoort, Gert 1995 1995-01-10 PMC N PMC7130653 7831770.0 10.1016/s0042-6822(95)80030-1 27fd59qe 0.645157 Luytjes_1988, Rice_1992, Vennema_1991, Wurch_1991 Nowak_1984, Goldberg_1991
45 Ren_W_2013 Complete genome sequence of acute viral necrosis virus associated with massive mortality outbreaks in the Chinese scallop, Chlamys farreri Ren, Weicheng; Chen, Haixia; Renault, Tristan; Cai, Yuyong; Bai, Changming; Wang, Chongming; Huang, Jie 2013 2013-04-08 COMM-USE N PMC3623871 23566284.0 10.1186/1743-422x-10-110 m1ujexeb 0.639749 Luytjes_1988, Rott_1991, Firth_2009, Tohya_1991, Godeny_1990 Goldberg_1991
46 Bacher_1994 Sequence analysis of the 3' termini of RNA1 and RNA2 of blueberry leaf mottle virus Bacher, J.W.; Warkentin, D.; Ramsdell, D.; Hancock, J.F. 1994 1994-08-31 PMC N 7975879.0 10.1016/0168-1702(94)90051-5 xrue7s6l 0.632883 Rott_1991, Luytjes_1988, Gorbalenya_1988, Firth_2009
47 Snijder_1991 Comparison of the genome organization of toro- and coronaviruses: Evidence for two nonhomologous RNA recombination events during berne virus evolution Snijder, Eric J.; Den Boon, Johan A.; Horzinek, Marian C.; Spaan, Willy J.M. 1991 1991-01-31 PMC N PMC7126633 1984666.0 10.1016/0042-6822(91)90056-h x1dv7ag8 0.622394 Luytjes_1988, Firth_2009, Rice_1992, Gorbalenya_1988, Lamb_1991
48 Hedges_1996 Genetic variation in open reading frame 2 of field isolates and laboratory strains of equine arteritis virus Hedges, Jodi F.; Balasuriya, Udeni B.R.; Timoney, Peter J.; McCollum, William H.; MacLachlan, N.James 1996 1996-06-30 PMC N PMC7133956 8806173.0 10.1016/0168-1702(96)01294-4 6r7d5n3l 0.619291 Luytjes_1988, Rice_1992, Auewarakul_2005
49 O'Connor_2000 Downstream Ribosomal Entry for Translation of Coronavirus TGEV Gene 3b O'Connor, Jennifer Black; Brian, David A. 2000 2000-03-30 PMC N PMC7130589 10725209.0 10.1006/viro.2000.0218 kh2t0kfz 0.596275 Jendrach_2014, Lamb_1991, Morikawa_1992, Wurch_1991, Vennema_1991
50 Zhang_2007 Genomic characterization of equine coronavirus Zhang, Jianqiang; Guy, James S.; Snijder, Eric J.; Denniston, Doug A.; Timoney, Peter J.; Balasuriya, Udeni B.R. 2007 2007-12-05 PMC N PMC7103287 17706262.0 10.1016/j.virol.2007.06.035 rqfxe0x1 0.594673 Rice_1992, Ryu_W_2017, Lamb_1991
51 Scott_1987 Origin of the human L1 elements: Proposed progenitor genes deduced from a consensus DNA sequence Scott, Alan F.; Schmeckpeper, Barbara J.; Abdelrazik, Mona; Comey, Catherine Theisen; O'Hara, Bruce; Rossiter, Judith Pratt; Cooley, Tim; Heath, Peter; Smith, Kirby D.; Margolet, Louise 1987 1987-10-31 PMC N PMC7135745 3692483.0 10.1016/0888-7543(87)90003-6 po9gnpr9 0.580929 Morikawa_1992, Luytjes_1988, Firth_2009, Hatfield_1990, Krause_1987 Goldberg_1991, Firth_2009, Lapps_1987
52 Graham_2008 Sequence analysis of a reovirus isolated from the winter moth Operophtera brumata (Lepidoptera: Geometridae) and its parasitoid wasp Phobocampe tempestiva (Hymenoptera: Ichneumonidae) Graham, Robert I.; Rao, Shujing; Sait, Steven M.; Attoui, Houssam; Mertens, Peter P.C.; Hails, Rosemary S.; Possee, Robert D. 2008 2008-07-31 PMC N PMC7114361 18405997.0 10.1016/j.virusres.2008.02.005 s0zrvn9o 0.574709 Wurch_1991, Firth_2009, Krause_1987, Luytjes_1988, Vennema_1991 Goldberg_1991
53 Huh_C_1995 Structural organization, expression and chromosomal mapping of the mouse cystatin-C-encoding gene (Cst3) Huh, Changgoo; Nagle, James W.; Kozak, Christine A.; Abrahamson, Magnus; Karlsson, Stefan 1995 1995-01-23 PMC N 7835704.0 10.1016/0378-1119(94)00728-b loey5xq9 0.565950 Morikawa_1992, Krause_1987, Firth_2009, Luytjes_1988
54 Dye_C_2007 Genomic RNA sequence of feline coronavirus strain FCoV C1Je Dye, Charlotte; Siddell, Stuart G. 2007 2007-06-30 PMC N PMC2582377 17363313.0 10.1016/j.jfms.2006.12.002 wkg56xeq 0.560461 Rice_1992
55 Grötzinger_1996 Characterization of a 105-kDa Polypeptide Encoded in Gene 1 of the Human Coronavirus HCV 229E Grötzinger, Carsten; Heusipp, Gerhard; Ziebuhr, John; Harms, Ute; Süss, Jochen; Siddell, Stuart G. 1996 1996-08-01 PMC N PMC7130665 8806502.0 10.1006/viro.1996.0413 qfmzrexc 0.526807 Pong_2011, Stork_2011, Rice_1992, Lamb_1991
56 Jendrach_2014 Characterization of an internal ribosome entry site within mRNA 5 of murine hepatitis virus Jendrach, M.; Thiel, V.; Siddell, S. 2014 2014-05-18 PMC N PMC7087331 10416375.0 10.1007/s007050050556 yb7ydyu2 0.526338 Morikawa_1992, Vennema_1991, Wurch_1991, Luytjes_1988
57 Laude_1990 Molecular biology of transmissible gastroenteritis virus Laude, Hubert; Rasschaert, Denis; Delmas, Bernard; Godet, Murielle; Gelfi, Jacqueline; Charley, Bernard 1990 1990-06-30 PMC N PMC7117338 2169670.0 10.1016/0378-1135(90)90144-k orlqn5em 0.523829 Rice_1992, Gorbalenya_1988
58 Penzes_2001 Complete Genome Sequence of Transmissible Gastroenteritis Coronavirus PUR46-MAD Clone and Evolution of the Purdue Virus Cluster Penzes, Zoltan; González, Jose M.; Calvo, Enrique; Izeta, Ander; Smerdou, Cristian; Méndez, Ana; Sánchez, Carlos M.; Sola, Isabel; Almazán, Fernando; Enjuanes, Luis 2001 2001-01-01 PMC N PMC7088808 11556396.0 10.1023/a:1011147832586 ay4kqfne 0.520059 Rice_1992, Gorbalenya_1988, Ryu_W_2017, Luytjes_1988
59 Monceyron_2014 Molecular characterisation of the 3′-end of the astrovirus genome Monceyron, C.; Grinde, B.; Jonassen, T. Ø. 2014 2014-04-02 PMC N PMC7087294 9170498.0 10.1007/s007050050112 a8g3hba9 0.520036 Luytjes_1988, Auewarakul_2005, Rice_1992, Gorbalenya_1988 Godeny_1990, Lapps_1987, Goldberg_1991, Lin_T_2004
60 Meulenberg_1997 Molecular characterization of Lelystad virus Meulenberg, J.J.M.; Petersen den Besten, A.; de Kluyver, E.; van Nieuwstadt, A.; Wensvoort, G.; Moormann, R.J.M. 1997 1997-04-30 PMC N PMC7117323 9220614.0 10.1016/s0378-1135(96)01335-1 jcb9w8y9 0.516335 Luytjes_1988, Tohya_1991, Lamb_1991, Ryu_W_2017 Meulenberg_1995
61 Wurch_1991 The cauliflower mosaic virus reverse transcriptase is not produced by the mechanism of ribosomal frameshifting in Saccharomyces cerevisiae Wurch, T.; Guidasci, T.; Geldreich, A.; Lebeurier, G.; Mesnard, J.-M. 1991 1991-02-28 PMC N 1703375.0 10.1016/0042-6822(91)90103-i m770a1rl 0.509506 Morikawa_1992, Lamb_1991, Vennema_1991, Firth_2009
62 Shukla_2014 Acquisition of new protein domains by coronaviruses: analysis of overlapping genes coding for proteins N and 9b in SARS coronavirus Shukla, Aditi; Hilgenfeld, Rolf 2014 2014-11-20 PMC N PMC7089080 25410051.0 10.1007/s11262-014-1139-8 sykkypar 0.508000 Lamb_1991, Morikawa_1992, Firth_2009, Hatfield_1990, Luytjes_1988 Firth_2009
63 Zoltick_1989 A general method for the induction and screening of antisera for cDNA-encoded polypeptides: antibodies specific for a coronavirus putative polymerase-encoding gene Zoltick, Philip W.; Leibowitz, Julian L.; DeVries, James R.; Weinstock, George M.; Weiss, Susan R. 1989 1989-12-28 PMC N PMC7127337 2560756.0 10.1016/0378-1119(89)90434-4 bago6g6k 0.504208 Rice_1992 Nowak_1984
64 Mondal_2004 Comparison of four regions in the replicase gene of heterologous infectious bronchitis virus strains Mondal, Shankar P; Cardona, Carol J 2004 2004-06-20 PMC N PMC7125564 15183070.0 10.1016/j.virol.2004.03.032 78m8ylz5 0.480279 Rice_1992, Luytjes_1988, Gorbalenya_1988, Zhou_2011 Tzeng_2006
65 Lili_1992 Lactate dehydrogenase-elevating virus (LDV): subgenomic mRNAs, mRNA leader and comparison of 3'-terminal sequences of two LDV isolates Lili, Kuo; Zongyu, Chen; Rowland, Raymond R.R.; Faaberg, Kay S.; Plagemann, Peter G.W. 1992 1992-04-30 PMC N PMC7133880 1604932.0 10.1016/0168-1702(92)90067-j kfmbo6gz 0.480082 Luytjes_1988, Firth_2009, Krause_1987, Jendrach_2014, Rott_1991 Godeny_1990, Goldberg_1991
66 Nowak_1984 Physical mapping of human cytomegalovirus genes: Identification of DNA sequences coding for a virion phosphoprotein of 71 kDa and a viral 65-kDa polypeptide Nowak, Barbara; Gmeiner, Agnes; Sarnow, Peter; Levine, Arnold J.; Fleckenstein, Bernhard 1984 1984-04-15 PMC N PMC7131772 6324477.0 10.1016/0042-6822(84)90275-7 ov92qh6h 0.467379 Stork_2011, Rice_1992
67 Othman_1995 Nucleotide sequence of the bean strain of southern bean mosaic virus Othman, Yasmin; Hull, Roger 1995 1995-01-10 PMC N PMC7130989 7831784.0 10.1016/s0042-6822(95)80044-1 ktn8c0zx 0.457474 Rott_1991, Auewarakul_2005, Ryu_W_2017 Goldberg_1991, Tzeng_2006
68 Plagemann_1991 Hepatitis C virus Plagemann, P. G. W. 1991 1991-01-01 PMC N PMC7087296 1659796.0 10.1007/bf01310473 h9ppa064 0.455655 Rice_1992, Auewarakul_2005, Luytjes_1988, Morikawa_1992 Tzeng_2006
69 Chen_1995 Detection of related positive-strand RNA virus genomes by reverse transcription/polymerase chain reaction using degenerate primers for common replicase sequences Chen, Zongyu; Plagemann, Peter G.W. 1995 1995-12-31 PMC N PMC7134001 8837898.0 10.1016/0168-1702(95)00093-3 4t8ra5oa 0.455337 Rice_1992 Nowak_1984
70 Meyers_1992 Rearrangement of viral sequences in cytopathogenic pestiviruses Meyers, Gregor; Tautz, Norbert; Stark, Robert; Brownlie, Joe; Dubovi, Edward J.; Collett, Marc S.; Thiel, Heinz-Jürgen 1992 1992-11-30 PMC N PMC7131167 1329326.0 10.1016/0042-6822(92)90199-y tvjqnxy8 0.439873 Rice_1992, Payne_2017, Morikawa_1992
71 Brierley_1987 An efficient ribosomal frame-shifting signal in the polymerase-encoding region of the coronavirus IBV. Brierley, I; Boursnell, M E; Binns, M M; Bilimoria, B; Blok, V C; Brown, T D; Inglis, S C 1987 1987-12-01 PMC N PMC553849 3428275.0 zyaqh139 0.438526 Morikawa_1992, Lamb_1991, Wurch_1991, Vennema_1991, Krause_1987 Nowak_1984, Tzeng_2006
72 Bruce_1989 Detection of enteroviruses using cDNA and synthetic oligonucleotide probes Bruce, C.; Al-Nakib, W.; Forsyth, M.; Stanway, G.; Almond, J.W. 1989 1989-08-31 PMC N 2550504.0 10.1016/0166-0934(89)90035-9 nw8zwv51 0.425663 Rice_1992, Auewarakul_2005, Majerciak_2018 Nowak_1984
73 Tzeng_2006 C-E1 fusion protein synthesized by rubella virus DI RNAs maintained during serial passage Tzeng, Wen-Pin; Frey, Teryl K. 2006 2006-12-20 None N PMC2694048 16938325.0 10.1016/j.virol.2006.07.041 sik7m86l 0.422297 Rice_1992, Banerjee_2001, Stork_2011, Payne_2017 Adams_2003
74 Brown_1984 Avian infectious bronchitis virus genomic RNA contains sequence homologies at the intergenic boundaries Brown, T.D.K.; Boursnell, M.E.G. 1984 1984-01-31 PMC N PMC7134132 10.1016/0168-1702(84)90031-5 kw2cedm7 0.421647 An_S_1998, Krause_1987 Nowak_1984, Tzeng_2006
75 Senanayake_1997 Bovine coronavirus I protein synthesis follows ribosomal scanning on the bicistronic N mRNA Senanayake, Savithra D.; Brian, David A. 1997 1997-04-30 PMC N PMC7134031 9140198.0 10.1016/s0168-1702(96)01423-2 wsdda43u 0.413276 Morikawa_1992, Wurch_1991, Firth_2009, Lamb_1991 Goldberg_1991
76 White_1991 Defective RNAs of clover yellow mosaic virus encode nonstructural/coat protein fusion products White, K.Andrew; Brancroft, J.B.; Mackie, George A. 1991 1991-08-31 PMC N PMC7130666 1830181.0 10.1016/0042-6822(91)90977-j gu9ptt9y 0.409335 Lamb_1991, Morikawa_1992, Krause_1987, Banerjee_2001, Stork_2011 Tzeng_2006, Goldberg_1991
77 Zhang_2000 Identification of a Noncanonical Signal for Transcription of a Novel Subgenomic mRNA of Mouse Hepatitis Virus: Implication for the Mechanism of Coronavirus RNA Transcription Zhang, Xuming; Liu, Runzhong 2000 2000-12-05 PMC N PMC7130745 11112483.0 10.1006/viro.2000.0637 z5uhrta5 0.408357 Morikawa_1992, Gendron_2010, Krause_1987, Jendrach_2014, Wurch_1991
78 Edwards_2014 Coat protein expression strategy of oat blue dwarf virus Edwards, Michael C.; Weiland, John J. 2014 2014-02-28 PMC N 24503092.0 10.1016/j.virol.2013.12.018 wyhsxj6g 0.393733 Morikawa_1992, Lamb_1991, Vennema_1991, Stork_2011
79 Page_1990 Sequence analysis of the leader RNA of two porcine coronaviruses: Transmissible gastroenteritis virus and porcine respiratory coronavirus Page, Kevin W.; Britton, Paul; Boursnell, Michael E. G. 1990 1990-01-01 PMC N PMC7088910 1962975.0 10.1007/bf00570024 o81j3d1j 0.391770 Rice_1992, Banerjee_2001, Stork_2011 Baric_1985
80 Muñoz-Chimeno_2016 Full coding hepatitis E virus genotype 3 genome amplification method Muñoz-Chimeno, M.; Forero, J.E.; Echevarría, J.M.; Muñoz-Bellido, J.L.; Vázquez-López, L.; Morago, L.; García-Galera, M.C.; Avellón, A. 2016 2016-04-30 PMC N 26784284.0 10.1016/j.jviromet.2016.01.004 07u2kpe5 0.387634 Luytjes_1988, Firth_2009, Yamanaka_1998, Wurch_1991, Lee_H_1991
81 Ortego_2003 Transmissible gastroenteritis coronavirus gene 7 is not essential but influences in vivo virus replication and virulence Ortego, Javier; Sola, Isabel; Almazán, Fernando; Ceriani, Juan E; Riquelme, Cristina; Balasch, Monica; Plana, Juan; Enjuanes, Luis 2003 2003-03-30 PMC N PMC7126239 12706086.0 10.1016/s0042-6822(02)00096-x oxyzndsj 0.376582 Rice_1992 Tzeng_2006
82 Ghorai_2010 Molecular characterization of genome segment 2 encoding RNA dependent RNA polymerase of Antheraea mylitta cytoplasmic polyhedrosis virus Ghorai, Suvankar; Chakrabarti, Mrinmay; Roy, Sobhan; Chavali, Venkata Ramana Murthy; Bagchi, Abhisek; Ghosh, Ananta Kumar 2010 2010-08-15 PMC N PMC7111928 20488502.0 10.1016/j.virol.2010.04.019 bd2bkz5t 0.374281 Wurch_1991, Luytjes_1988, Gorbalenya_1988, Stork_2011 Goldberg_1991, Nowak_1984, Tzeng_2006
83 Meier_2006 The Crystal Structure of ORF-9b, a Lipid Binding Protein from the SARS Coronavirus Meier, Christoph; Aricescu, A. Radu; Assenberg, Rene; Aplin, Robin T.; Gilbert, Robert J.C.; Grimes, Jonathan M.; Stuart, David I. 2006 2006-07-31 None N PMC7126280 16843897.0 10.1016/j.str.2006.05.012 kpnpb0fp 0.374155 Morikawa_1992, Krause_1987, Lamb_1991
84 Krause_1987 A trans-spliced leader sequence on actin mRNA in C. elegans Krause, Michael; Hirsh, David 1987 1987-06-19 PMC N 10.1016/0092-8674(87)90613-1 hpv6916w 0.369291 Lamb_1991, Morikawa_1992, Hatfield_1990 Samal_2013, Parsons_1984, Schwer_1987
85 Pavesi_2020 New insights into the evolutionary features of viral overlapping genes by discriminant analysis Pavesi, Angelo 2020 2020-04-02 PMC Y 10.1016/j.virol.2020.03.007 abgti7jh 0.364153 Krause_1987, Luytjes_1988, Firth_2009, Xu_J_2016 Godeny_1990
86 Opuu_2017 Computational design of fully overlapping coding schemes for protein pairs and triplets Opuu, Vaitea; Silvert, Martin; Simonson, Thomas 2017 2017-11-20 COMM-USE N PMC5696523 29158504.0 10.1038/s41598-017-16221-8 d86hnox1 0.360830 Krause_1987, Morikawa_1992, Firth_2009 Firth_2009, Lin_T_2004, Goldberg_1991
87 MÉNDEZ_1996 Molecular Characterization of Transmissible Gastroenteritis Coronavirus Defective Interfering Genomes: Packaging and Heterogeneity MÉNDEZ, ANA; SMERDOU, CRISTIAN; IZETA, ANDER; GEBAUER, FÁTIMA; ENJUANES, LUIS 1996 1996-03-15 PMC N PMC7131039 8610441.0 10.1006/viro.1996.0144 i9q5il41 0.344312 Banerjee_2001, Rice_1992, Auewarakul_2005, Brown_1984, Payne_2017 Tzeng_2006, Derdeyn_1995
88 Gordon_1985 Subgenomic RNAs with nucleotide sequences derived from RNAs 1 and 2 of cucumber mosaic virus can act as messenger RNAsin Vitro Gordon, Karl H.J.; Symons, Robert H. 1985 1985-04-15 PMC N 10.1016/0042-6822(85)90429-5 2w2hfpv3 0.342268 Banerjee_2001, Stork_2011, Chen_2013
89 Bertholet_1987 Vaccinia virus produces late mRNAs by discontinuous synthesis Bertholet, Christine; Van Meir, Erwin; ten Heggeler-Bordier, Béatrice; Wittek, Riccardo 1987 1987-07-17 PMC N PMC7133321 3036368.0 10.1016/0092-8674(87)90211-x so5jooj0 0.338855 Lamb_1991, Morikawa_1992, Krause_1987, Hatfield_1990 Schwer_1987, Tzeng_2006
90 Brierley_1989 Characterization of an efficient coronavirus ribosomal frameshifting signal: Requirement for an RNA pseudoknot Brierley, Ian; Digard, Paul; Inglis, Stephen C. 1989 1989-05-19 PMC N PMC7133225 2720781.0 10.1016/0092-8674(89)90124-4 5i3g2zb7 0.334334 Morikawa_1992, Hatfield_1990, Krause_1987, Lamb_1991 Brierley_1991, Su_M_2005
91 Firth_2009 A case for a CUG-initiated coding sequence overlapping torovirus ORF1a and encoding a novel 30 kDa product Firth, Andrew E; Atkins, John F 2009 2009-09-08 COMM-USE N PMC2749830 19737402.0 10.1186/1743-422x-6-136 giea69b5 0.333980 Lamb_1991, Morikawa_1992, Luytjes_1988, Hatfield_1990
92 Jonassen_2007 Detection and Sequence Characterization of the 3′-End of Coronavirus Genomes Harboring the Highly Conserved RNA Motif s2m Jonassen, Christine Monceyron 2007 2007-11-28 PMC N PMC7122199 19057866.0 10.1007/978-1-59745-181-9_3 xl4u7n6r 0.328651 Rice_1992, Firth_2009, Lamb_1991 Goldberg_1991, Lin_T_2004, Monceyron_2014
93 Lewis_1995 An astrovirus frameshift signal induces ribosomal frameshifting in vitro Lewis, T. L.; Matsui, S. M. 1995 1995-01-01 PMC N PMC7087256 7611883.0 10.1007/bf01315421 ti3jy64e 0.326307 Morikawa_1992, Lamb_1991, Luytjes_1988, Vennema_1991 Li_L_2001, Leibowitz_1988, Tzeng_2006
94 Markoff_2003 5′- and 3′-noncoding regions in flavivirus RNA Markoff, Lewis 2003 2003-12-31 PMC N PMC7119107 14696330.0 10.1016/s0065-3527(03)59006-6 jl3pf4ko 0.325322 Banerjee_2001, Chen_2017, Stork_2011, Lamb_1991, Payne_2017 Bhullar_2014, Adams_2003
95 Murphy_2010 Sequence–function analysis of the Sendai virus L protein domain VI Murphy, Andrea M.; Moerdyk-Schauwecker, Megan; Mushegian, Arcady; Grdzelishvili, Valery Z. 2010 2010-09-30 PMC N PMC2923248 20609457.0 10.1016/j.virol.2010.06.019 l5y3qkde 0.310111 Gorbalenya_1988, Stork_2011, Pong_2011, Rice_1992 Masante_2015, Godeny_1990, Zhou_2011
96 Draker_2006 The complete sequence of the bovine torovirus genome Draker, Ryan; Roper, Rachel L.; Petric, Martin; Tellier, Raymond 2006 2006-01-31 PMC N PMC7114287 16137782.0 10.1016/j.virusres.2005.07.005 bvvjdnp7 0.305091 Gorbalenya_1988, Luytjes_1988, Firth_2009, Morikawa_1992, Lee_H_1991
97 Johnson_2003 Sequence elements controlling expression of Barley stripe mosaic virus subgenomic RNAs in vivo Johnson, Jennifer A; Bragg, Jennifer N; Lawrence, Diane M; Jackson, Andrew O 2003 2003-08-15 PMC N 12951022.0 10.1016/s0042-6822(03)00285-x lnagg1uw 0.301533 Lamb_1991, Morikawa_1992, Krause_1987, Bencun_2018