Topic 01 -- Abstracts with Biological Entities (English) - 75 Topics / Sub-Topic Model 12 - 15 Topics

cite ad title authors publish year publish time dataset abstract mentions covid pmcid pubmed id doi cord uid topic weight Similarity scispacy Similarity specter
1 Alcami_2000 Viral mechanisms of immune evasion Alcami, Antonio; Koszinowski, Ulrich H. 2000 2000-09-01 PMC N PMC7141567 10953097.0 10.1016/s0167-5699(00)01699-6 jn8w7z0t 0.979374 Alcami_2000, Alcami_2000, Denison_2008 Alcami_2000, Alcami_2000, Galluzzi_2008, Watanabe_2019
2 Alcami_2000 Viral mechanisms of immune evasion Alcami, Antonio; Koszinowski, Ulrich H. 2000 2000-09-01 PMC N PMC7141568 10989308.0 10.1016/s0966-842x(00)01830-8 tfok8ep7 0.979374 Alcami_2000, Alcami_2000, Denison_2008 Alcami_2000, Alcami_2000, Galluzzi_2008, Watanabe_2019
3 Alcami_2000 Viral mechanisms of immune evasion Alcami, Antonio; Koszinowski, Ulrich H. 2000 2000-09-01 PMC N PMC7141564 10954870.0 10.1016/s1357-4310(00)01775-5 504kr50e 0.959215 Alcami_2000, Alcami_2000, Denison_2008 Alcami_2000, Alcami_2000, Galluzzi_2008, Watanabe_2019
4 Katze_2008 Innate immune modulation by RNA viruses: emerging insights from functional genomics Katze, Michael G.; Fornek, Jamie L.; Palermo, Robert E.; Walters, Kathie-Anne; Korth, Marcus J. 2008 2008-01-01 PMC N PMC7097543 18654572.0 10.1038/nri2377 85wj08gr 0.957780 Kindler_2014, Kim_S_2018, Mao_J_2019, Berkhout_2006
5 Mazzon_2019 Targeting viral entry as a strategy for broad-spectrum antivirals Mazzon, Michela; Marsh, Mark 2019 2019-09-12 COMM-USE N PMC6743247 31559009.0 10.12688/f1000research.19694.1 ll34i3eg 0.955637 Berkhout_2006, Trobaugh_2017, Rivas_2016, Haasnoot_2010 Teissier_2010
6 Heaton_2011 Multifaceted roles for lipids in viral infection Heaton, Nicholas S.; Randall, Glenn 2011 2011-07-31 None N PMC3130080 21530270.0 10.1016/j.tim.2011.03.007 xvl9i86c 0.954643 Shi_J_2012, Berkhout_2006, Kim_S_2018 Watanabe_2019, Chiramel_2013, Chan_2010, Sze_C_2015
7 Heise_2014 Viral Pathogenesis Heise, M.T. 2014 2014-12-31 PMC N PMC7157475 10.1016/b978-0-12-801238-3.00079-9 nreqluol 0.946592 Rivas_2016 Hibbs_1995
8 Shulla_2016 (+) RNA virus replication compartments: a safe home for (most) viral replication Shulla, Ana; Randall, Glenn 2016 2016-08-31 None N PMC4983521 27253151.0 10.1016/j.mib.2016.05.003 4eufvh88 0.929945 Sasvari_2010, Denison_2008
9 Lou_Z_2014 Current progress in antiviral strategies Lou, Zhiyong; Sun, Yuna; Rao, Zihe 2014 2014-02-28 PMC N PMC7112804 24439476.0 10.1016/j.tips.2013.11.006 2vy28i4m 0.916918 Mao_J_2019, Berkhout_2006 Magden_2004
10 von_Hahn_2015 Cyclophilin polymorphism and virus infection von Hahn, Thomas; Ciesek, Sandra 2015 2015-10-31 PMC N PMC7102842 26281011.0 10.1016/j.coviro.2015.07.012 6xm0b5el 0.904512 Trobaugh_2017, Haasnoot_2010, Herbert_2016 Sun_D_2016, Hopkins_2015
11 Mayer_2019 Hijacking the Supplies: Metabolism as a Novel Facet of Virus-Host Interaction Mayer, Katharina A.; Stöckl, Johannes; Zlabinger, Gerhard J.; Gualdoni, Guido A. 2019 2019-07-03 COMM-USE N PMC6617997 31333664.0 10.3389/fimmu.2019.01533 554zcjoq 0.902563 Berkhout_2006, Shi_J_2012, Cheng_2014, Wilson_2012 Watanabe_2019, Lin_L_2010, Giorda_2013
12 Fan_Y_2018 Breaking Bad: How Viruses Subvert the Cell Cycle Fan, Ying; Sanyal, Sumana; Bruzzone, Roberto 2018 2018-11-19 COMM-USE N PMC6252338 30510918.0 10.3389/fcimb.2018.00396 bsnz24jx 0.896890 Kim_S_2018, Shi_J_2012, Berkhout_2006, Kindler_2014 Bagga_2014, Galluzzi_2008, Chemudupati_2019, Giorda_2013
13 Berkhout_2006 The interplay between virus infection and the cellular RNA interference machinery Berkhout, Ben; Haasnoot, Joost 2006 2006-05-22 PMC N PMC7094296 16563388.0 10.1016/j.febslet.2006.02.070 9et0iwj4 0.896598 Trobaugh_2017, Shi_J_2012, Herbert_2016, Haasnoot_2010 Garcia_2014
14 Diehl_2013 Make Yourself at Home: Viral Hijacking of the PI3K/Akt Signaling Pathway Diehl, Nora; Schaal, Heiner 2013 2013-12-16 COMM-USE N PMC3967167 24351799.0 10.3390/v5123192 5dxclfnr 0.891510 Berkhout_2006, Shi_J_2012, Trobaugh_2017 Lin_L_2010, Fulcher_2011, van_Tol_2017, Watanabe_2019
15 Lever_2011 Insights into cellular factors that regulate HIV-1 replication in human cells Lever, Andrew ML; Jeang, Kuan-Teh 2011 2011-02-15 PMC N PMC3035746 21218853.0 10.1021/bi101805f lkrgdt6y 0.889855 Trobaugh_2017, Berkhout_2006, den_Boon_2010, Haasnoot_2010 Sun_D_2016
16 Welsch_2010 Hijacking Cellular Garbage Cans Welsch, Sonja; Locker, Jacomine Krijnse 2010 2010-06-17 PMC N PMC7103366 20542246.0 10.1016/j.chom.2010.05.014 p4eekani 0.876292 Klein_2011, Taschuk_2020, Shi_J_2012, Denison_2008, Kim_S_2018 Giorda_2013, Reggiori_2011, Sun_D_2016
17 Ploubidou_2001 Viral transport and the cytoskeleton Ploubidou, Aspasia; Way, Michael 2001 2001-02-01 PMC N PMC7125730 11163140.0 10.1016/s0955-0674(00)00180-0 x3wes54j 0.862774 Denison_2008, Shi_J_2012, Kim_S_2018 Sze_C_2015, Mak_T_2016
18 Goodwin_2015 Stealing the Keys to the Kitchen: Viral Manipulation of the Host Cell Metabolic Network Goodwin, Christopher M.; Xu, Shihao; Munger, Joshua 2015 2015-12-31 None N PMC4679435 26439298.0 10.1016/j.tim.2015.08.007 phl7kr8f 0.861950 Mao_J_2019, Berkhout_2006, Shi_J_2012, Kim_S_2018 Mayer_2019, Giorda_2013, Lin_L_2010
19 Fernández‐Oliva_2019 Targeting host lipid flows: Exploring new antiviral and antibiotic strategies Fernández‐Oliva, Alberto; Ortega‐González, Paula; Risco, Cristina 2019 2019-01-17 PMC N PMC7162424 30585688.0 10.1111/cmi.12996 pra0398r 0.847043
20 Miller_2005 Pleiotropic mechanisms of virus survival and persistence Miller, Craig S. 2005 2005-08-31 PMC N PMC7118778 16037790.0 10.1016/j.tripleo.2005.03.017 bu5pzbnv 0.846056 Shi_J_2012, Mao_J_2019, Berkhout_2006 Hibbs_1995, Giorda_2013
21 Shaw_2011 The Host Interactome of Influenza Virus Presents New Potential Targets for Antiviral Drugs Shaw, Megan L. 2011 2011-08-08 None N PMC3207218 21823192.0 10.1002/rmv.703 c732txfd 0.844842 Berkhout_2006, Haasnoot_2010, Trobaugh_2017, Kindler_2014
22 Giorda_2013 Viroporins Customize Host Cells for Efficient Viral Propagation Giorda, Kristina M.; Hebert, Daniel N. 2013 2013-10-01 PMC N PMC3785214 23945006.0 10.1089/dna.2013.2159 ewnvy8fq 0.841734 Mao_J_2019, Kim_S_2018, Shi_J_2012, Cheng_2014 Bagga_2014, Wulan_2015, Sun_D_2016
23 Royle_2015 Emerging Roles of Viroporins Encoded by DNA Viruses: Novel Targets for Antivirals? Royle, Jamie; Dobson, Samuel John; Müller, Marietta; Macdonald, Andrew 2015 2015-10-16 COMM-USE N PMC4632388 26501313.0 10.3390/v7102880 3aonqyub 0.838843 Trobaugh_2017, Shi_J_2012, Taschuk_2020, Haasnoot_2010, Berkhout_2006 Nieva_2012, Fulcher_2011, Giorda_2013
24 Wang_2017 Viral lncRNA: A regulatory molecule for controlling virus life cycle Wang, Ziqiang; Zhao, Yiwan; Zhang, Yaou 2017 2017-03-23 None N PMC6096409 30159419.0 10.1016/j.ncrna.2017.03.002 213ddk0s 0.832550 Trobaugh_2017, Haasnoot_2010, Berkhout_2006, Shi_J_2012, Herbert_2016 Chavez-Calvillo_2018
25 Connolly_2017 Viral hijacking of host caspases: an emerging category of pathogen–host interactions Connolly, Patrick F; Fearnhead, Howard O 2017 2017-05-12 PMC N PMC5520459 28524855.0 10.1038/cdd.2017.59 zy3ynp7q 0.832091 Berkhout_2006, Klein_2011, Shi_J_2012, Mao_J_2019 Galluzzi_2008, Lin_L_2010, Sun_D_2016
26 Mesters_2006 Viral enzymes Mesters, Jeroen R; Tan, Jinzhi; Hilgenfeld, Rolf 2006 2006-12-31 PMC N PMC7127120 17085042.0 10.1016/j.sbi.2006.10.010 2gxmhwit 0.821067 den_Boon_2010, Denison_2008, Berkhout_2006, Trobaugh_2017 Diaz_2012, Wulan_2015, Sun_D_2016
27 Hull_2014 Chapter 7 Replication of Plant Viruses Hull, Roger 2014 2014-12-31 PMC N 10.1016/b978-0-12-384871-0.00007-8 qbm5tn4t 0.820766 den_Boon_2010, Trobaugh_2017, Berkhout_2006
28 Kim_S_2018 The essential role of mitochondrial dynamics in antiviral immunity Kim, Seong-Jun; Ahn, Dae-Gyun; Syed, Gulam H.; Siddiqui, Aleem 2018 2018-07-31 PMC N PMC5988924 29246869.0 10.1016/j.mito.2017.11.007 vvyul140 0.818133 Mao_J_2019, Shi_J_2012 Lin_L_2010, Galluzzi_2008, Cheng_2014
29 Wharton_1993 Virus — cell interactions in the nervous system and the role of the immune response Wharton, Stephen B.; Nash, Anthony A. 1993 1993-10-31 PMC N PMC7134718 8260827.0 10.1016/0959-4388(93)90151-n bfm7ecwr 0.818035 Shi_J_2012, Kim_S_2018, Berkhout_2006
30 Souza_2019 Killing two birds with one stone: How do Plant Viruses Break Down Plant Defenses and Manipulate Cellular Processes to Replicate Themselves? Souza, Pedro Filho Noronha; Carvalho, Fabricio Eulálio Leite 2019 2019-05-27 PMC N PMC7090608 10.1007/s12374-019-0056-8 gabr03sm 0.813202 Mao_J_2019, Berkhout_2006, Shi_J_2012, Kindler_2014 Bagga_2014, Galluzzi_2008, Garcia_2014, Berkhout_2006
31 Llano_2018 Chapter Seven Defining Pharmacological Targets by Analysis of Virus–Host Protein Interactions Llano, Manuel; Peña-Hernandez, Mario A. 2018 2018-12-31 PMC N PMC6322211 29459033.0 10.1016/bs.apcsb.2017.11.001 yzc4bosn 0.812035 Berkhout_2006, Mao_J_2019, Shi_J_2012, Kindler_2014 A_Abdullah_2018, Teissier_2010, Watanabe_2019
32 Qi_D_2018 Virus infection-induced host mRNA degradation and potential application of live cell imaging Qi, Dan; Guan, Jitian; Wu, Erxi 2018 2018-12-31 PMC N PMC7104030 10.1016/j.jrid.2018.12.002 fhmhpobi 0.810458 Berkhout_2006, Trobaugh_2017, Shi_J_2012, Mao_J_2019 Galluzzi_2008
33 Durmuş_2017 Comparative interactomics for virus–human protein–protein interactions: DNA viruses versus RNA viruses Durmuş, Saliha; Ülgen, Kutlu Ö. 2017 2017-01-04 COMM-USE N PMC5221455 28097092.0 10.1002/2211-5463.12167 sx1fyqw0 0.810070 Berkhout_2006, Trobaugh_2017, Kindler_2014 Chemudupati_2019, Wulan_2015, Zhang_2015
34 Robinson_2018 Viral journeys on the intracellular highways Robinson, Makeda; Schor, Stanford; Barouch-Bentov, Rina; Einav, Shirit 2018 2018-07-24 PMC N PMC6151136 30043139.0 10.1007/s00018-018-2882-0 w9i9pgt4 0.806736 Shi_J_2012, Kim_S_2018 Giorda_2013, Watanabe_2019, Lin_L_2010
35 Kumar_2018 Role of MAPK/MNK1 signaling in virus replication Kumar, Ram; Khandelwal, Nitin; Thachamvally, Riyesh; Tripathi, Bhupendra Nath; Barua, Sanjay; Kashyap, Sudhir Kumar; Maherchandani, Sunil; Kumar, Naveen 2018 2018-07-15 PMC N PMC7114592 29864503.0 10.1016/j.virusres.2018.05.028 xc34ugbe 0.805884 Berkhout_2006, Trobaugh_2017 Cooray_2007, Chemudupati_2019
36 Desfarges_2012 Viral Integration and Consequences on Host Gene Expression Desfarges, Sébastien; Ciuffi, Angela 2012 2012-09-25 PMC N PMC7120651 10.1007/978-94-007-4899-6_7 5tysuiuw 0.805262 Hull_2014, Berkhout_2006, Trobaugh_2017 Bagga_2014, Giorda_2013
37 Mazzon_2014 Lipid interactions during virus entry and infection Mazzon, Michela; Mercer, Jason 2014 2014-09-11 COMM-USE N PMC4265854 25131438.0 10.1111/cmi.12340 emfnhenm 0.801760 Kim_S_2018, Shi_J_2012, Mao_J_2019 Giorda_2013, Watanabe_2019, Grove_2011, Chan_2010
38 Li_S_2019 Regulation of Ribosomal Proteins on Viral Infection Li, Shuo 2019 2019-05-27 COMM-USE N PMC6562653 31137833.0 10.3390/cells8050508 eewdmyou 0.795730 Berkhout_2006, Trobaugh_2017, Shi_J_2012, den_Boon_2010 Wulan_2015, Zhang_2015, Neufeldt_2016
39 Damas_2019 Functional Interplay between RNA Viruses and Non-Coding RNA in Mammals Damas, Nkerorema Djodji; Fossat, Nicolas; Scheel, Troels K. H. 2019 2019-01-14 COMM-USE N PMC6468702 30646609.0 10.3390/ncrna5010007 dr82eaoi 0.784228 Trobaugh_2017, Berkhout_2006, Herbert_2016, den_Boon_2010 Wulan_2015, Diaz_2012
40 Cheng_2014 Commentary on the Regulation of Viral Proteins in Autophagy Process Cheng, Ching-Yuan; Chi, Pei-I; Liu, Hung-Jen 2014 2014-03-10 COMM-USE N PMC3966343 24734254.0 10.1155/2014/962915 k3j858ik 0.781419 Shi_J_2012, Kim_S_2018, Klein_2011 Espert_2007, Lin_L_2010, Shoji-Kawata_2009
41 Vigerust_2007 Virus glycosylation: role in virulence and immune interactions Vigerust, David J.; Shepherd, Virginia L. 2007 2007-05-31 PMC N PMC7127133 17398101.0 10.1016/j.tim.2007.03.003 1bxoxy30 0.777780 Watanabe_2019, Mao_J_2019 Watanabe_2019
42 Greco_2009 Involvement of the nucleolus in replication of human viruses Greco, Anna 2009 2009-04-28 PMC N PMC7169183 19399920.0 10.1002/rmv.614 qr9xnk5l 0.769595 den_Boon_2010, Volmer_2010, Trobaugh_2017, Klein_2011, Berkhout_2006
43 Glingston_2019 Organelle dynamics and viral infections: at cross roads Glingston, R. Sahaya; Deb, Rachayeeta; Kumar, Sachin; Nagotu, Shirisha 2019 2019-02-28 PMC N PMC7110583 29953921.0 10.1016/j.micinf.2018.06.002 hbpfz8rt 0.763477 Shi_J_2012, Berkhout_2006, Cheng_2014, Mao_J_2019, den_Boon_2010 Lin_L_2010, Grangeon_2012, Sze_C_2015
44 Alves-Rodrigues_2006 Saccharomyces cerevisiae: A useful model host to study fundamental biology of viral replication Alves-Rodrigues, Isabel; Galão, Rui Pedro; Meyerhans, Andreas; Díez, Juana 2006 2006-09-30 PMC N PMC7114155 16698107.0 10.1016/j.virusres.2005.11.018 14z8g7pk 0.761615 Berkhout_2006, den_Boon_2010 Hughes_2012, Giorda_2013, Bagga_2014
45 Nagy_2008 Host Factors Promoting Viral RNA Replication Nagy, Peter D.; Pogany, Judit 2008 2008-11-01 PMC N PMC7120932 10.1007/b135974_14 gskcaawt 0.758744 den_Boon_2010, Trobaugh_2017, Berkhout_2006, Li_Z_2011 Wulan_2015, Diaz_2012, Li_Z_2009
46 König_2015 Recent strategies and progress in identifying host factors involved in virus replication König, Renate; Stertz, Silke 2015 2015-08-31 PMC N 26112615.0 10.1016/j.mib.2015.06.001 cf336j6k 0.751765 Berkhout_2006, Alcami_2000, Alcami_2000 Giorda_2013, Meyers_2011, Bagga_2014
47 Cann_2012 Chapter 4 Replication Cann, Alan J. 2012 2012-12-31 PMC N PMC7149686 10.1016/b978-0-12-384939-7.10004-3 s0bldxg9 0.748669 den_Boon_2010, Cann_2008, Hull_2014, Trobaugh_2017 Wulan_2015, Netherton_2007, Bagga_2014
48 Dunn_2012 Chapter 9 HijAkt The PI3K/Akt Pathway in Virus Replication and Pathogenesis Dunn, Ewan F.; Connor, John H. 2012 2012-12-31 PMC N PMC7149925 22340720.0 10.1016/b978-0-12-396456-4.00002-x 26yc50h3 0.742379 Shi_J_2012, Berkhout_2006, Trobaugh_2017, Klein_2011 Cooray_2007, Fulcher_2011, Sun_D_2016
49 Walsh_2011 Viral subversion of the host protein synthesis machinery Walsh, Derek; Mohr, Ian 2011 2011-10-17 PMC N PMC7097311 22002165.0 10.1038/nrmicro2655 0oikpvwo 0.739183 Herbert_2016, Gaucherand_2019, Trobaugh_2017, Berkhout_2006 Roberts_2009, Gaucherand_2019, Guerrero_2015
50 Colbère-Garapin_2005 Silencing viruses by RNA interference Colbère-Garapin, Florence; Blondel, Bruno; Saulnier, Aure; Pelletier, Isabelle; Labadie, Karine 2005 2005-04-30 PMC N PMC7110879 15820151.0 10.1016/j.micinf.2005.02.003 4uw4frer 0.738265 Trobaugh_2017, Berkhout_2006, Herbert_2016, Haasnoot_2010
51 Ohta_2011 Mitochondria and viruses Ohta, Akane; Nishiyama, Yukihiro 2011 2011-01-31 PMC N PMC7105242 20813204.0 10.1016/j.mito.2010.08.006 i6o3oor1 0.735614 Shi_J_2012, Taschuk_2020, Kim_S_2018 Galluzzi_2008, Kim_S_2018
52 Reggiori_2011 Unconventional Use of LC3 by Coronaviruses through the Alleged Subversion of the ERAD Tuning Pathway Reggiori, Fulvio; de Haan, Cornelis A.M.; Molinari, Maurizio 2011 2011-09-05 COMM-USE N PMC3187687 21994798.0 10.3390/v3091610 wwiay5jm 0.729403 Denison_2008, Klein_2011, Berkhout_2006, Shi_J_2012 Sun_D_2016
53 Bagga_2014 Cell Cycle Regulation During Viral Infection Bagga, Sumedha; Bouchard, Michael J. 2014 2014-03-27 PMC N PMC7122065 24906315.0 10.1007/978-1-4939-0888-2_10 nrh3lv1a 0.728645 Trobaugh_2017, Berkhout_2006, den_Boon_2010, Mao_J_2019 Emmett_2005, Galluzzi_2008, Giorda_2013
54 Rivas_2016 Shutoff of Host Gene Expression in Influenza A Virus and Herpesviruses: Similar Mechanisms and Common Themes Rivas, Hembly G.; Schmaling, Summer K.; Gaglia, Marta M. 2016 2016-04-16 COMM-USE N PMC4848596 27092522.0 10.3390/v8040102 44ecr3re 0.724620 Shi_J_2012, Berkhout_2006, Trobaugh_2017 Gaucherand_2019, Gaucherand_2018, Chemudupati_2019
55 Wilson_2012 Sumoylation at the Host-Pathogen Interface Wilson, Van G. 2012 2012-04-05 COMM-USE N PMC3685863 23795346.0 10.3390/biom2020203 1awau7hm 0.722995 Berkhout_2006, Shi_J_2012, Viswanathan_2010 Wimmer_2015, Wilson_2016, El_Motiam_2019
56 Tarakhovsky_2018 Drawing on disorder: How viruses use histone mimicry to their advantage Tarakhovsky, Alexander; Prinjha, Rab K. 2018 2018-07-02 NONCOMM N PMC6028506 29934321.0 10.1084/jem.20180099 ti0avcqy 0.722613 Denison_2008, Berkhout_2006, Trobaugh_2017, Rivas_2016, Shi_J_2012 Chemudupati_2019, Watanabe_2019
57 Josset_2014 Noncoding RNA Expression During Viral Infection: The Long and the Short of It Josset, Laurence; Tisoncik-Go, Jennifer; Katze, Michael G. 2014 2014-11-05 PMC N PMC7123390 10.1007/978-3-319-13689-9_6 0xvfis28 0.721990 Trobaugh_2017, Haasnoot_2010
58 Charman_2020 Replication Compartments of DNA Viruses in the Nucleus: Location, Location, Location Charman, Matthew; Weitzman, Matthew D. 2020 2020-01-29 COMM-USE N PMC7077188 32013091.0 10.3390/v12020151 hygxwl2f 0.721286 den_Boon_2010, Trobaugh_2017, Shi_J_2012 Wulan_2015, Harak_2015, Giorda_2013, Netherton_2007
59 Mudhakir_2009 Learning from the Viral Journey: How to Enter Cells and How to Overcome Intracellular Barriers to Reach the Nucleus Mudhakir, Diky; Harashima, Hideyoshi 2009 2009-02-05 PMC N PMC2664881 19194803.0 10.1208/s12248-009-9080-9 4b5s9nal 0.721026 Mao_J_2019, den_Boon_2010 Giorda_2013, Fulcher_2011, Watanabe_2019
60 Dai_X_2020 Orchestrated efforts on host network hijacking: Processes governing virus replication Dai, Xiaofeng; Hakizimana, Olivier; Zhang, Xuanhao; Kaushik, Aman Chandra; Zhang, Jianying 2020 2020-02-12 COMM-USE N PMC7051146 32050846.0 10.1080/21505594.2020.1726594 1dc46btc 0.716412 Mao_J_2019, Kim_S_2018, Berkhout_2006, Shi_J_2012 Galluzzi_2008, Lin_L_2010, Bagga_2014
61 Zakaryan_2011 Nuclear remodelling during viral infections Zakaryan, H.; Stamminger, T. 2011 2011-04-28 PMC N PMC7162193 21501365.0 10.1111/j.1462-5822.2011.01596.x q24jycgk 0.716406 Berkhout_2006, Klein_2011, Taschuk_2020, den_Boon_2010
62 Luo_H_2016 Interplay between the virus and the ubiquitin–proteasome system: molecular mechanism of viral pathogenesis Luo, Honglin 2016 2016-04-30 PMC N PMC7102833 26426962.0 10.1016/j.coviro.2015.09.005 7lj4bfli 0.712892 Shi_J_2012, Kim_S_2018, Viswanathan_2010, Mao_J_2019 Fulcher_2011, van_Tol_2017, Galluzzi_2008, Sun_D_2016
63 Mahon_2014 Cullin E3 Ligases and Their Rewiring by Viral Factors Mahon, Cathal; Krogan, Nevan J.; Craik, Charles S.; Pick, Elah 2014 2014-10-13 COMM-USE N PMC4279162 25314029.0 10.3390/biom4040897 nnebnagr 0.712229 Viswanathan_2010, Bailey-Elkin_2017, Taschuk_2020, Shi_J_2012 van_Tol_2017, Viswanathan_2010, Wimmer_2015
64 Nieva_2012 Viroporins: structure and biological functions Nieva, José Luis; Madan, Vanesa; Carrasco, Luis 2012 2012-07-02 PMC N PMC7097105 22751485.0 10.1038/nrmicro2820 qhx330ig 0.709181 den_Boon_2010, Trobaugh_2017, Volmer_2010 Royle_2015, Sun_D_2016
65 Schneider_2016 Chapter 12 The Virus–Host Interactome Knowing the Players to Understand the Game Schneider, Monika; Johnson, Jeffery R.; Krogan, Nevan J.; Chanda, Sumit K. 2016 2016-12-31 PMC N PMC7149720 10.1016/b978-0-12-800964-2.00012-4 f676pagf 0.708189 Alcami_2000, Alcami_2000 Durmuş_2017, Tarakhovsky_2018, Chemudupati_2019
66 Wylie_2013 Virome genomics: a tool for defining the human virome Wylie, Kristine M; Weinstock, George M; Storch, Gregory A 2013 2013-08-31 PMC N PMC3755052 23706900.0 10.1016/j.mib.2013.04.006 084o1dmp 0.705547 Trobaugh_2017 Meliopoulos_2012, Giorda_2013
67 Calistri_2014 The Ubiquitin-Conjugating System: Multiple Roles in Viral Replication and Infection Calistri, Arianna; Munegato, Denis; Carli, Ilaria; Parolin, Cristina; Palù, Giorgio 2014 2014-05-06 COMM-USE N PMC4092849 24805990.0 10.3390/cells3020386 qcx5ehnh 0.705004 Berkhout_2006, Viswanathan_2010, Taschuk_2020, Wilson_2012, Klein_2011 van_Tol_2017, Wimmer_2015, Bailey-Elkin_2017, Gustin_2011
68 Galluzzi_2008 Viral Control of Mitochondrial Apoptosis Galluzzi, Lorenzo; Brenner, Catherine; Morselli, Eugenia; Touat, Zahia; Kroemer, Guido 2008 2008-05-30 COMM-USE N PMC2376094 18516228.0 10.1371/journal.ppat.1000018 w2xuf15h 0.703127 Berkhout_2006, Mao_J_2019, Viswanathan_2010, Shi_J_2012 Cooray_2007, Neumann_2015, Bagga_2014, Shoji-Kawata_2009
69 Thomas_2018 Upsetting the Balance: When Viruses Manipulate Cell Polarity Control Thomas, Miranda; Banks, Lawrence 2018 2018-09-28 PMC N PMC7094317 29680664.0 10.1016/j.jmb.2018.04.016 cjqbisvm 0.702613 Berkhout_2006, Shi_J_2012, Trobaugh_2017, Haasnoot_2010 Bagga_2014, Giorda_2013, Chemudupati_2019
70 Marsh_2006 Virus Entry: Open Sesame Marsh, Mark; Helenius, Ari 2006 2006-02-24 PMC N PMC7112260 16497584.0 10.1016/j.cell.2006.02.007 8rl4kswe 0.701089 Denison_2008, Cullen_2009, Alcami_2000 Giorda_2013, Mainou_2017, Sze_C_2015
71 Doms_2016 Chapter 3 Basic Concepts A Step-by-Step Guide to Viral Infection Doms, Robert W. 2016 2016-12-31 PMC N PMC7150246 10.1016/b978-0-12-800964-2.00003-3 1jztk9gl 0.693866 Berkhout_2006, Mao_J_2019, Shi_J_2012 Galluzzi_2008
72 FENNER_1987 CHAPTER 6 Pathogenesis: Virus-Induced Changes in Cells FENNER, FRANK; BACHMANN, PETER A.; GIBBS, E. PAUL J.; MURPHY, FREDERICK A.; STUDDERT, MICHAEL J.; WHITE, DAVID O. 1987 1987-12-31 PMC N 10.1016/b978-0-12-253055-5.50010-4 uvr4tktn 0.693022 Denison_2008, Berkhout_2006, Hull_2014, Trobaugh_2017, Volmer_2010
73 Tripp_2013 Respiratory Syncytial Virus (RSV) Modulation at the Virus-Host Interface Affects Immune Outcome and Disease Pathogenesis Tripp, Ralph A. 2013 2013-10-26 NONCOMM N PMC3817296 24198740.0 10.4110/in.2013.13.5.163 bp8v2c2o 0.691534 Mao_J_2019, Shi_J_2012, Kim_S_2018
74 Wilson_2016 Viral Interplay with the Host Sumoylation System Wilson, Van G. 2016 2016-12-12 PMC N PMC7121812 28197923.0 10.1007/978-3-319-50044-7_21 783kpnkq 0.690455 Berkhout_2006, Shi_J_2012, Taschuk_2020, Viswanathan_2010 Chemudupati_2019, van_Tol_2017, Wimmer_2015, Fulcher_2011
75 Ryan_2016 Activation of the DNA Damage Response by RNA Viruses Ryan, Ellis L.; Hollingworth, Robert; Grand, Roger J. 2016 2016-01-06 COMM-USE N PMC4808796 26751489.0 10.3390/biom6010002 t1lxtox3 0.688790 Trobaugh_2017, Berkhout_2006, den_Boon_2010, Shi_J_2012, Herbert_2016 Chemudupati_2019, Bagga_2014, Galluzzi_2008
76 Haughey_2011 Roles for Biological Membranes in Regulating Human Immunodeficiency Virus Replication and Progress in the Development of HIV Therapeutics that Target Lipid Metabolism Haughey, Norman J.; Tovar-y-Romo, Luis B.; Bandaru, Veera Venkata Ratnam 2011 2011-03-29 PMC N PMC3417146 21445582.0 10.1007/s11481-011-9274-7 526yckze 0.686113 Mao_J_2019, Trobaugh_2017, Kim_S_2018 Watanabe_2019, Hopkins_2015
77 Meyers_2011 Viral RNase Involvement in Strategies of Infection Meyers, Gregor; Rümenapf, Tillmann; Ziebuhr, John 2011 2011-07-12 PMC N PMC7120235 10.1007/978-3-642-21078-5_6 4s0keus5 0.684827 den_Boon_2010, Trobaugh_2017, Herbert_2016, Berkhout_2006 Sun_D_2016, Wulan_2015
78 Chiramel_2013 Divergent Roles of Autophagy in Virus Infection Chiramel, Abhilash I.; Brady, Nathan R.; Bartenschlager, Ralf 2013 2013-01-25 COMM-USE N PMC3972664 24709646.0 10.3390/cells2010083 1oawya1p 0.684361 Shi_J_2012, Kim_S_2018, Mao_J_2019 Espert_2007, Cheng_2014, Lee_H_2008, Sir_D_2010
79 Guo_L_2018 Viral manipulation of host mRNA decay Guo, Liang; Vlasova-St Louis, Irina; Bohjanen, Paul R 2018 2018-03-01 PMC N PMC5939598 29750084.0 10.2217/fvl-2017-0106 1rm2ruqo 0.683599 Trobaugh_2017, Herbert_2016, Abernathy_2015, Berkhout_2006 Abernathy_2015, Du_S_2018, Gaucherand_2019
80 Dinman_1998 Translating old drugs into new treatments: ribosomal frameshifting as a target for antiviral agents Dinman, Jonathan D; Ruiz-Echevarria, Maria J; Peltz, Stuart W 1998 1998-04-01 PMC N PMC7127214 9586242.0 10.1016/s0167-7799(97)01167-0 wqi4z0ne 0.683369 Trobaugh_2017, Stork_2011, Gaucherand_2019
81 Choi_2012 The ubiquitin‐proteasome system in positive‐strand RNA virus infection Choi, Alex GoEun; Wong, Jerry; Marchant, David; Luo, Honglin 2012 2012-07-11 PMC N PMC7169083 22782620.0 10.1002/rmv.1725 8mon7mz3 0.683350 Berkhout_2006, Shi_J_2012, Trobaugh_2017, Taschuk_2020, Klein_2011
82 Seissler_2017 Hijacking of the Ubiquitin/Proteasome Pathway by the HIV Auxiliary Proteins Seissler, Tanja; Marquet, Roland; Paillart, Jean-Christophe 2017 2017-10-31 COMM-USE N PMC5707529 29088112.0 10.3390/v9110322 whfyczcj 0.679745 Shi_J_2012, Trobaugh_2017, Berkhout_2006, Klein_2011, Viswanathan_2010 van_Tol_2017, Sun_D_2016
83 Fondong_2013 Geminivirus protein structure and function Fondong, Vincent N. 2013 2013-04-25 PMC N PMC6638828 23615043.0 10.1111/mpp.12032 eo3bei9x 0.678866 den_Boon_2010, Trobaugh_2017, Berkhout_2006, Haasnoot_2010 Sun_D_2016, Zhang_2015, Wulan_2015, Diaz_2012
84 Salvetti_2014 Viruses and the nucleolus: The fatal attraction Salvetti, Anna; Greco, Anna 2014 2014-06-30 PMC N PMC7135015 24378568.0 10.1016/j.bbadis.2013.12.010 9ums2e9n 0.677518 den_Boon_2010, Volmer_2010, Taschuk_2020, Dubois_2016, Trobaugh_2017 Wulan_2015, Fulcher_2011, Sun_D_2016
85 Swaine_2015 CDC42 Use in Viral Cell Entry Processes by RNA Viruses Swaine, Thomas; Dittmar, Matthias T. 2015 2015-12-10 COMM-USE N PMC4690878 26690467.0 10.3390/v7122955 x022ou4y 0.675507 Shi_J_2012, Berkhout_2006, Cheng_2014, Klein_2011 Fulcher_2011, Bagga_2014
86 Mainou_2017 The Orchestra of Reovirus Cell Entry Mainou, Bernardo A. 2017 2017-07-13 PMC N PMC6897391 31815091.0 10.1007/s40588-017-0067-5 402o8uys 0.674521 Trobaugh_2017, Berkhout_2006, Shi_J_2012, Kim_S_2018 Sun_D_2016, Giorda_2013
87 Hibbs_1995 1 Viruses, virulence and pathogenicity Hibbs, Jonathan; Young, Neal S. 1995 1995-03-31 PMC N PMC7134682 7663043.0 10.1016/s0950-3536(05)80230-6 1b3g0ls3 0.672444 Mao_J_2019, Berkhout_2006, Kindler_2014 Giorda_2013, Galluzzi_2008, Tripp_2013
88 Hughes_2012 Drosophila as a genetic model for studying pathogenic human viruses Hughes, Tamara T.; Allen, Amanda L.; Bardin, Joseph E.; Christian, Megan N.; Daimon, Kansei; Dozier, Kelsey D.; Hansen, Caom L.; Holcomb, Lisa M.; Ahlander, Joseph 2012 2012-02-05 PMC N PMC3253880 22177780.0 10.1016/j.virol.2011.11.016 n3p4wefa 0.669028 Berkhout_2006, Denison_2008, Cullen_2009 Omel’yanchuk_2011
89 Maillard_2019 Slicing and dicing viruses: antiviral RNA interference in mammals Maillard, Pierre V; van der Veen, Annemarthe G; Poirier, Enzo Z; Reis e Sousa, Caetano 2019 2019-03-15 COMM-USE N PMC6463209 30872283.0 10.15252/embj.2018100941 aas31i79 0.668938 Berkhout_2006, Shi_J_2012, Kindler_2014 Berkhout_2006
90 de_Wilde_2017 Host Factors in Coronavirus Replication de Wilde, Adriaan H.; Snijder, Eric J.; Kikkert, Marjolein; van Hemert, Martijn J. 2017 2017-06-23 PMC N PMC7119980 28643204.0 10.1007/82_2017_25 ddza1x3z 0.667707 den_Boon_2010, Trobaugh_2017
91 Jaafar_2018 Viral RNA structure-based strategies to manipulate translation Jaafar, Zane A.; Kieft, Jeffrey S. 2018 2018-12-04 PMC N PMC6452865 30514982.0 10.1038/s41579-018-0117-x 3t78vm63 0.661338 Trobaugh_2017, Berkhout_2006, Denison_2008, Roberts_2009, Rivas_2016 Roberts_2009, Wulan_2015
92 Pombo_2018 Perturbation of Intracellular Cholesterol and Fatty Acid Homeostasis During Flavivirus Infections Pombo, Joao Palma; Sanyal, Sumana 2018 2018-06-04 COMM-USE N PMC5994796 29915602.0 10.3389/fimmu.2018.01276 w39f584z 0.661158 Shi_J_2012, Berkhout_2006, Mao_J_2019, Kim_S_2018 Mingorance_2018
93 Fischer_2012 Chapter six Mechanism of Function of Viral Channel Proteins and Implications for Drug Development Fischer, Wolfgang B.; Wang, Yi-Ting; Schindler, Christina; Chen, Chin-Pei 2012 2012-12-31 PMC N PMC7149447 22364876.0 10.1016/b978-0-12-394305-7.00006-9 n7j0c4ne 0.656957 Trobaugh_2017, Tessier_2019, Taschuk_2020, Haasnoot_2010, Volmer_2010 To_J_2018, Sze_C_2015, Fulcher_2011, Fischer_2011
94 Schmitz_2014 The intricate interplay between RNA viruses and NF-κB Schmitz, M. Lienhard; Kracht, Michael; Saul, Vera V. 2014 2014-11-30 PMC N PMC7114235 25116307.0 10.1016/j.bbamcr.2014.08.004 47nukrdh 0.655005 Trobaugh_2017, Berkhout_2006, Kindler_2014 Chemudupati_2019
95 Yang_2016 Chapter 14 Metabolomics and Lipidomics Yet More Ways Your Health Is Influenced by Fat Yang, Priscilla L. 2016 2016-12-31 PMC N PMC7149616 10.1016/b978-0-12-800964-2.00014-8 0mdv60t4 0.653752 Shi_J_2012, Berkhout_2006, Kindler_2014, Cheng_2014
96 Urbanowski_2008 Modulation of signaling pathways by RNA virus capsid proteins Urbanowski, Matthew D.; Ilkow, Carolina S.; Hobman, Tom C. 2008 2008-07-31 PMC N PMC7127581 18258415.0 10.1016/j.cellsig.2007.12.018 1k3h4xks 0.651786 den_Boon_2010, Trobaugh_2017, Taschuk_2020 Wulan_2015, Neufeldt_2016, Zhang_2015, Ni_P_2013
97 Luo_H_2010 Protein degradation systems in viral myocarditis leading to dilated cardiomyopathy Luo, Honglin; Wong, Jerry; Wong, Brian 2010 2010-01-15 PMC N PMC7109953 19578074.0 10.1093/cvr/cvp225 15c85zi4 0.650255 Mao_J_2019, Kim_S_2018, Shi_J_2012 Galluzzi_2008
98 Ravindran_2016 Opportunistic intruders: how viruses orchestrate ER functions to infect cells Ravindran, Madhu Sudhan; Bagchi, Parikshit; Cunningham, Corey Nathaniel; Tsai, Billy 2016 2016-06-06 None N PMC5272919 27265768.0 10.1038/nrmicro.2016.60 ddbybpv2 0.649283 Berkhout_2006, Shi_J_2012, Cheng_2014, Klein_2011, Trobaugh_2017 Giorda_2013, Lin_L_2010, Watanabe_2019
99 Ma-Lauer_2012 Virus–host interactomes — antiviral drug discovery Ma-Lauer, Yue; Lei, Jian; Hilgenfeld, Rolf; von Brunn, Albrecht 2012 2012-10-31 PMC N PMC7102765 23057872.0 10.1016/j.coviro.2012.09.003 z5axksvp 0.647241 Berkhout_2006, Trobaugh_2017, Haasnoot_2010, Shi_J_2012 Watanabe_2019, Durmuş_2017, Chemudupati_2019
100 Ahlquist_2005 Viral and host determinants of RNA virus vector replication and expression Ahlquist, Paul; Schwartz, Michael; Chen, Jianbo; Kushner, David; Hao, Linhui; Dye, Billy T. 2005 2005-03-07 PMC N PMC7115378 15734041.0 10.1016/j.vaccine.2004.11.005 oq25o4qr 0.646449 den_Boon_2010, Trobaugh_2017, Berkhout_2006 Diaz_2012, Wulan_2015, Harak_2015
101 Gustin_2011 Viral Takeover of the Host Ubiquitin System Gustin, Jean K.; Moses, Ashlee V.; Früh, Klaus; Douglas, Janet L. 2011 2011-07-28 PMC N PMC3147166 21847386.0 10.3389/fmicb.2011.00161 ua9xagq3 0.645144 Berkhout_2006, Taschuk_2020, den_Boon_2010, Klein_2011, Trobaugh_2017 Wimmer_2015, van_Tol_2017, Sun_D_2016, Calistri_2014
102 Chan_2010 Implications for lipids during replication of enveloped viruses Chan, Robin B.; Tanner, Lukas; Wenk, Markus R. 2010 2010-06-30 PMC N PMC7124286 20230810.0 10.1016/j.chemphyslip.2010.03.002 y7v7bm0b 0.644346 den_Boon_2010 Watanabe_2019, Wang_2016, Giorda_2013, Wulan_2015
103 To_J_2018 Beyond Channel Activity: Protein-Protein Interactions Involving Viroporins To, Janet; Torres, Jaume 2018 2018-06-14 PMC N PMC7122450 29900504.0 10.1007/978-981-10-8456-0_15 qydevzn1 0.643840 Berkhout_2006, Taschuk_2020, Haasnoot_2010, Trobaugh_2017, Tessier_2019 Fulcher_2011, Nieva_2012, Zhang_2015
104 Raman_2016 Glycan–protein interactions in viral pathogenesis Raman, Rahul; Tharakaraman, Kannan; Sasisekharan, V; Sasisekharan, Ram 2016 2016-10-31 None N PMC5526076 27792989.0 10.1016/j.sbi.2016.10.003 30d7t5bf 0.643327 Kindler_2014, Viswanathan_2010 Watanabe_2019, Zhang_2015
105 Chavez-Calvillo_2018 The Structure-To-Function Relationships of Gammaherpesvirus-Encoded Long Non-Coding RNAs and Their Contributions to Viral Pathogenesis Chavez-Calvillo, Gabriela; Martin, Sarah; Hamm, Chad; Sztuba-Solinska, Joanna 2018 2018-09-26 COMM-USE N PMC6315926 30261651.0 10.3390/ncrna4040024 ebcj0hw1 0.642695 Trobaugh_2017, Haasnoot_2010, Herbert_2016, Taschuk_2020, Li_Z_2011 Sun_D_2016
106 Valiente-Echeverría_2012 Viral modulation of stress granules Valiente-Echeverría, Fernando; Melnychuk, Luca; Mouland, Andrew J. 2012 2012-11-30 PMC N PMC7114395 22705970.0 10.1016/j.virusres.2012.06.004 8eu6wp9b 0.641580 Shi_J_2012, Berkhout_2006, Mao_J_2019 Montero_2011, Miller_2011
107 Burrell_2017 Chapter 4 Virus Replication Burrell, Christopher J.; Howard, Colin R.; Murphy, Frederick A. 2017 2017-12-31 PMC N 10.1016/b978-0-12-375156-0.00004-7 fhvt1ht1 0.639959 Trobaugh_2017, den_Boon_2010, Berkhout_2006, Herbert_2016
108 Haasnoot_2010 RNAi and Cellular miRNAs in Infections by Mammalian Viruses Haasnoot, Joost; Berkhout, Ben 2010 2010-11-19 PMC N PMC7120436 21431677.0 10.1007/978-1-61779-037-9_2 tg1310br 0.639505 Trobaugh_2017, Berkhout_2006, Herbert_2016, Abernathy_2015 Trobaugh_2017, Moens_2009, Berkhout_2006
109 Kaur_2020 The multifarious roles of heterogeneous ribonucleoprotein A1 in viral infections Kaur, Ramandeep; Lal, Sunil K. 2020 2020-01-27 PMC N PMC7169068 31989716.0 10.1002/rmv.2097 tvpw56x6 0.638895 Trobaugh_2017, den_Boon_2010, Berkhout_2006
110 Maginnis_2018 Virus–Receptor Interactions: The Key to Cellular Invasion Maginnis, Melissa S. 2018 2018-08-17 PMC N PMC6083867 29924965.0 10.1016/j.jmb.2018.06.024 mvdtoplq 0.638486 Kindler_2014, Berkhout_2006, Trobaugh_2017
111 Milev_2018 10 Impacts of virus-mediated manipulation of host Dynein Milev, Miroslav P.; Yao, Xaojian; Berthoux, Lionel; Mouland, Andrew J. 2018 2018-12-31 PMC N PMC7150161 10.1016/b978-0-12-809470-9.00010-2 91qwbslx 0.638190 Berkhout_2006, Kim_S_2018, Shi_J_2012, Denison_2008, Mao_J_2019 Mouland_2012, Chemudupati_2019, Giorda_2013, Fulcher_2011
112 Gonzales-van_Horn_2017 Making the Mark: The Role of Adenosine Modifications in the Life Cycle of RNA Viruses Gonzales-van Horn, Sarah R.; Sarnow, Peter 2017 2017-06-14 None N PMC5555051 28618265.0 10.1016/j.chom.2017.05.008 ot7a2h9p 0.637784 Trobaugh_2017, Berkhout_2006, Herbert_2016, Haasnoot_2010, Shi_J_2012 Sun_D_2016
113 Helms_2015 Targeting of the Hydrophobic Metabolome by Pathogens Helms, J. Bernd; Kaloyanova, Dora V.; Strating, Jeroen R. P.; van Hellemond, Jaap J.; van der Schaar, Hilde M.; Tielens, Aloysius G. M.; van Kuppeveld, Frank J. M.; Brouwers, Jos F. 2015 2015-04-23 PMC N PMC7169838 25754025.0 10.1111/tra.12280 vjz3etdi 0.637735 Berkhout_2006, Shi_J_2012, Kim_S_2018
114 Desrochers_2018 ABPP and Host–Virus Interactions Desrochers, Geneviève F.; Pezacki, John Paul 2018 2018-09-23 PMC N PMC7121783 30244323.0 10.1007/82_2018_139 doxdnptd 0.633322 Trobaugh_2017, Berkhout_2006, Mao_J_2019, Kindler_2014 Sun_D_2016, Galluzzi_2008, A_Abdullah_2018
115 Kellam_2006 Infectogenomics: Insights from the Host Genome into Infectious Diseases Kellam, Paul; Weiss, Robin A. 2006 2006-02-24 PMC N PMC7119327 16497580.0 10.1016/j.cell.2006.02.003 747du9a1 0.633281
116 Emmett_2005 The Cell Cycle and Virus Infection Emmett, Stevan R.; Dove, Brian; Mahoney, Laura; Wurm, Torsten; Hiscox, Julian A. 2005 2005-01-01 PMC N PMC7120536 15576934.0 10.1385/1-59259-857-9:197 aenuyht0 0.631514 den_Boon_2010, Trobaugh_2017, Volmer_2010, Berkhout_2006 Bagga_2014, Wulan_2015, Netherton_2007
117 Sze_C_2015 Viral Membrane Channels: Role and Function in the Virus Life Cycle Sze, Ching Wooen; Tan, Yee-Joo 2015 2015-06-23 COMM-USE N PMC4488738 26110585.0 10.3390/v7062771 0gkonrzw 0.629348 den_Boon_2010, Shi_J_2012, Trobaugh_2017, Kim_S_2018, Klein_2011 Giorda_2013, Fulcher_2011, Sun_D_2016
118 Albert_2018 ISG15, a Small Molecule with Huge Implications: Regulation of Mitochondrial Homeostasis Albert, Manuel; Bécares, Martina; Falqui, Michela; Fernández-Lozano, Carlos; Guerra, Susana 2018 2018-11-13 COMM-USE N PMC6265978 30428561.0 10.3390/v10110629 v2dr4hm0 0.626492 Shi_J_2012, Berkhout_2006, Trobaugh_2017, Haasnoot_2010, Taschuk_2020
119 Kindler_2014 To sense or not to sense viral RNA—essentials of coronavirus innate immune evasion Kindler, Eveline; Thiel, Volker 2014 2014-08-31 PMC N PMC7108419 24908561.0 10.1016/j.mib.2014.05.005 u8b5sccq 0.625841 Mao_J_2019, Viswanathan_2010
120 Clark_2016 Chapter 21 Viral and Prion Infections Clark, David P.; Pazdernik, Nanette J. 2016 2016-12-31 PMC N 10.1016/b978-0-12-385015-7.00021-1 y105n25z 0.624086
121 De_Haan_2006 Hosting the severe acute respiratory syndrome coronavirus: specific cell factors required for infection De Haan, Cornelis A. M.; Rottier, Peter J. M. 2006 2006-06-27 PMC N PMC7162409 16803585.0 10.1111/j.1462-5822.2006.00744.x bpuyrsza 0.623664 Shi_J_2012, Berkhout_2006, Rivas_2016, Cheng_2014, Trobaugh_2017
122 Houzet_2011 MicroRNAs and human retroviruses Houzet, Laurent; Jeang, Kuan-Teh 2011 2011-12-31 None N PMC3177989 21640212.0 10.1016/j.bbagrm.2011.05.009 ncqw8fwr 0.623209 Trobaugh_2017, Herbert_2016, Haasnoot_2010 Moens_2009
123 Levine_2015 Beclin orthologs: integrative hubs of cell signaling, membrane trafficking, and physiology Levine, Beth; Liu, Rong; Dong, Xiaonan; Zhong, Qing 2015 2015-09-30 None N PMC4554927 26071895.0 10.1016/j.tcb.2015.05.004 vc2pdph9 0.621801 Shi_J_2012, Berkhout_2006 Lin_L_2010, Fulcher_2011, Cadwell_2018
124 Nagy_2011 The dependence of viral RNA replication on co-opted host factors Nagy, Peter D.; Pogany, Judit 2011 2011-12-19 PMC N PMC7097227 22183253.0 10.1038/nrmicro2692 adc3a8u7 0.621499 den_Boon_2010, Trobaugh_2017, Li_Z_2011 Diaz_2012, Wulan_2015, Neufeldt_2016
125 Stehle_2009 Specificity switching in virus–receptor complexes Stehle, Thilo; Casasnovas, José M 2009 2009-04-30 PMC N PMC7126087 19342221.0 10.1016/j.sbi.2009.02.013 nxjt8lo2 0.619277 Trobaugh_2017, Berkhout_2006, Haasnoot_2010 Watanabe_2019
126 Moon_2012 Inhibition and Avoidance of mRNA Degradation by RNA Viruses Moon, Stephanie L.; Barnhart, Michael D.; Wilusz, Jeffrey 2012 2012-08-01 PMC N PMC3424362 22626865.0 10.1016/j.mib.2012.04.009 cwwnsx9y 0.618579 Trobaugh_2017, Herbert_2016, Abernathy_2015, Berkhout_2006 Du_S_2018, Abernathy_2015, Gaete-Argel_2019
127 Gaglia_2010 Viruses and the cellular RNA decay machinery Gaglia, Marta Maria; Glaunsinger, Britt A. 2010 2010-05-06 PMC N PMC7169783 21956906.0 10.1002/wrna.3 qhr6iir6 0.615186 Berkhout_2006, Trobaugh_2017, Haasnoot_2010, Herbert_2016, Shi_J_2012
128 Li_T_2013 Traditional Chinese herbal medicine as a source of molecules with antiviral activity Li, Ting; Peng, Tao 2013 2013-01-31 PMC N PMC7114103 23153834.0 10.1016/j.antiviral.2012.10.006 vvjdzf29 0.610976
129 Boggio_2006 Viruses and sumoylation: recent highlights Boggio, Roberto; Chiocca, Susanna 2006 2006-08-31 PMC N PMC7108358 16815735.0 10.1016/j.mib.2006.06.008 m69hf9ys 0.610933 Taschuk_2020, El_Motiam_2019, Wilson_2012 Wimmer_2015, Watanabe_2019
130 Danthi_2011 Enter the kill zone: Initiation of death signaling during virus entry Danthi, Pranav 2011 2011-03-15 PMC N PMC7126532 21262519.0 10.1016/j.virol.2010.12.043 0cnjgec4 0.608079 Mao_J_2019, Kim_S_2018, Klein_2011, Trobaugh_2017 Bagga_2014, Galluzzi_2008, Giorda_2013
131 Hiscox_2010 Nucleolar proteomics and viral infection Hiscox, Julian A.; Whitehouse, Adrian; Matthews, David A. 2010 2010-07-19 PMC N PMC7167898 20661956.0 10.1002/pmic.201000251 1ci6rjot 0.604728 Trobaugh_2017, Berkhout_2006, Shi_J_2012, den_Boon_2010
132 Huang_2019 The interplay of autophagy and enterovirus Huang, Lihong; Yue, Jianbo 2019 2019-09-25 PMC N 10.1016/j.semcdb.2019.08.001 kmiybuxu 0.604043 Shi_J_2012, Mao_J_2019, Berkhout_2006, Klein_2011 Lin_L_2010, Ding_2017, Espert_2007
133 Fu_C_2011 Viral life cycles captured in three-dimensions with electron microscopy tomography Fu, Chi-yu; Johnson, Johnson E 2011 2011-08-31 None N PMC3163493 21887207.0 10.1016/j.coviro.2011.06.008 spye2c1x 0.602557 den_Boon_2010, Cullen_2009 Sachse_2019, Romero-Brey_2015
134 Villanueva_2005 Interactions Between Virus Proteins and Host Cell Membranes During the Viral Life Cycle Villanueva, Rodrigo A.; Rouillé, Yves; Dubuisson, Jean 2005 2005-12-31 PMC N PMC7112339 16125548.0 10.1016/s0074-7696(05)45006-8 niddmbgp 0.602290 den_Boon_2010, Volmer_2010 Wulan_2015
135 Watanabe_2019 Exploitation of glycosylation in enveloped virus pathobiology Watanabe, Yasunori; Bowden, Thomas A.; Wilson, Ian A.; Crispin, Max 2019 2019-10-23 None N PMC6686077 31121217.0 10.1016/j.bbagen.2019.05.012 zdr0f2uq 0.602290 Mao_J_2019 Vigerust_2007, Raman_2016
136 Moens_2009 Silencing Viral MicroRNA as a Novel Antiviral Therapy? Moens, Ugo 2009 2009-05-28 PMC N PMC2688686 19704916.0 10.1155/2009/419539 de7v4e5s 0.600216 Trobaugh_2017, Herbert_2016, Berkhout_2006 Chemudupati_2019
137 Trobaugh_2017 MicroRNA Regulation of RNA Virus Replication and Pathogenesis Trobaugh, Derek W.; Klimstra, William B. 2017 2017-01-31 None N PMC5836316 27989642.0 10.1016/j.molmed.2016.11.003 sblrsi6y 0.597725 Herbert_2016, Haasnoot_2010, Berkhout_2006 Moens_2009, Haasnoot_2010, Poltronieri_2015
138 Karlberg_2013 Structural biology of the writers, readers, and erasers in mono- and poly(ADP-ribose) mediated signaling Karlberg, Tobias; Langelier, Marie-France; Pascal, John M.; Schüler, Herwig 2013 2013-12-31 None N PMC3726583 23458732.0 10.1016/j.mam.2013.02.002 9jkhnxa4 0.596961 Taschuk_2020, Dubois_2016, Trobaugh_2017
139 Tessier_2019 Viral Appropriation: Laying Claim to Host Nuclear Transport Machinery Tessier, Tanner M.; Dodge, Mackenzie J.; Prusinkiewicz, Martin A.; Mymryk, Joe S. 2019 2019-06-08 COMM-USE N PMC6627039 31181773.0 10.3390/cells8060559 rg45m42j 0.593792 Trobaugh_2017, Taschuk_2020, Yarbrough_2013 Fulcher_2011, Yarbrough_2013, Bonamassa_2015, Neufeldt_2016
140 Taliansky_2010 Chapter 5 Involvement of the Plant Nucleolus in Virus and Viroid Infections Parallels with Animal Pathosystems Taliansky, M.E.; Brown, J.W.S.; Rajamäki, M.L.; Valkonen, J.P.T.; Kalinina, N.O. 2010 2010-12-31 PMC N PMC7149663 20951872.0 10.1016/b978-0-12-385034-8.00005-3 u6x5zd4i 0.591830 den_Boon_2010, Trobaugh_2017, Berkhout_2006, Li_Z_2011 Wulan_2015, Zhang_2015, Fulcher_2011
141 Lloyd_2015 Nuclear proteins hijacked by mammalian cytoplasmic plus strand RNA viruses Lloyd, Richard E. 2015 2015-05-31 PMC N PMC4426963 25818028.0 10.1016/j.virol.2015.03.001 ca2xxkb2 0.590875 den_Boon_2010, Trobaugh_2017, Li_Z_2011 Wulan_2015, Diaz_2012
142 Coiras_2008 Application of proteomics technology for analyzing the interactions between host cells and intracellular infectious agents Coiras, Mayte; Camafeita, Emilio; López‐Huertas, María Rosa; Calvo, Enrique; López, Juan Antonio; Alcamí, José 2008 2008-02-22 PMC N PMC7167661 18297655.0 10.1002/pmic.200700664 4ib12gnc 0.588166 Berkhout_2006, Shi_J_2012, Viswanathan_2010, Kim_S_2018
143 Denison_2008 Seeking Membranes: Positive-Strand RNA Virus Replication Complexes Denison, Mark R 2008 2008-10-28 COMM-USE N PMC2573941 18959488.0 10.1371/journal.pbio.0060270 qdy29oym 0.587599 Sasvari_2010, Diaz_2012
144 Bayliss_2018 Masters of manipulation: Viral modulation of the immunological synapse Bayliss, Rebecca J.; Piguet, Vincent 2018 2018-09-21 COMM-USE N PMC6492149 30123959.0 10.1111/cmi.12944 w0zjs8k7 0.587045 Mao_J_2019, Kim_S_2018, Kindler_2014 Galluzzi_2008, Bagga_2014
145 Sun_D_2016 Roles of the Picornaviral 3C Proteinase in the Viral Life Cycle and Host Cells Sun, Di; Chen, Shun; Cheng, Anchun; Wang, Mingshu 2016 2016-03-17 COMM-USE N PMC4810272 26999188.0 10.3390/v8030082 07nfb69o 0.586108 Trobaugh_2017, Berkhout_2006, den_Boon_2010, Haasnoot_2010, Taschuk_2020 Zhang_2015
146 Yarbrough_2013 Viral Subversion of Nucleocytoplasmic Trafficking Yarbrough, Melanie L.; Mata, Miguel A.; Sakthivel, Ramanavelan; Fontoura, Beatriz M. A. 2013 2013-12-02 None N PMC3910510 24289861.0 10.1111/tra.12137 5g58qfn6 0.584475 Trobaugh_2017, Tessier_2019, Berkhout_2006, Taschuk_2020 Fulcher_2011, Wulan_2015, Zhang_2015, Neufeldt_2016
147 Alcami_2016 Viral Anticytokine Strategies Alcami, Antonio 2016 2016-12-31 PMC N PMC7152433 10.1016/b978-0-12-374279-7.10018-9 s6xmrgll 0.584169 Viswanathan_2010 A_Abdullah_2018
148 Cooray_2007 The Role of Phosphoinositide 3-Kinase-Akt Signaling in Virus Infection Cooray, Samantha 2007 2007-01-01 PMC N PMC7120950 10.1007/978-1-59745-199-4_3 9fm2gpxx 0.582631 Mao_J_2019, Berkhout_2006, Kim_S_2018 Galluzzi_2008, Kumar_2018, Sun_D_2016
149 Lico_2007 Molecular farming for antigen (vaccine) production in plants Lico, Chiara; Baschieri, Selene; Marusic, Carla; Benvenuto, Eugenio 2007 2007-01-01 PMC N PMC7120765 10.1007/978-1-4020-5486-0_14 axbgacot 0.581350 Berkhout_2006, Houzet_2011
150 Torres-Flores_2015 Tight Junctions Go Viral! Torres-Flores, Jesús M.; Arias, Carlos F. 2015 2015-09-23 COMM-USE N PMC4584309 26404354.0 10.3390/v7092865 k5f9ybrc 0.581193 Trobaugh_2017, den_Boon_2010, Klein_2011, Berkhout_2006, Haasnoot_2010 Fulcher_2011, Zhang_2015
151 Dou_D_2018 Influenza A Virus Cell Entry, Replication, Virion Assembly and Movement Dou, Dan; Revol, Rebecca; Östbye, Henrik; Wang, Hao; Daniels, Robert 2018 2018-07-20 COMM-USE N PMC6062596 30079062.0 10.3389/fimmu.2018.01581 a3f4l6iu 0.578102 den_Boon_2010, Trobaugh_2017, Volmer_2010 Wulan_2015, Neufeldt_2016, Giorda_2013
152 Santoro_2009 Role of Heat Shock Proteins in Viral Infection Santoro, M. Gabriella; Amici, Carla; Rossi, Antonio 2009 2009-10-24 PMC N PMC7121897 10.1007/978-90-481-2976-8_3 mth4aebn 0.577903 Trobaugh_2017, Berkhout_2006, Volmer_2010 Sun_D_2016
153 Romero-Brey_2015 Viral Infection at High Magnification: 3D Electron Microscopy Methods to Analyze the Architecture of Infected Cells Romero-Brey, Inés; Bartenschlager, Ralf 2015 2015-12-03 COMM-USE N PMC4690864 26633469.0 10.3390/v7122940 d6ycc8ci 0.576953 Denison_2008, Cullen_2009, Marsh_2006, den_Boon_2010 Sachse_2019, Fu_C_2011, Risco_2013, Giorda_2013
154 Bailey-Elkin_2017 Structure and Function of Viral Deubiquitinating Enzymes Bailey-Elkin, Ben A.; Knaap, Robert C.M.; Kikkert, Marjolein; Mark, Brian L. 2017 2017-11-10 PMC N PMC7094624 28625850.0 10.1016/j.jmb.2017.06.010 4v41s3wi 0.576565 Viswanathan_2010, Kim_S_2018 Wimmer_2015, van_Tol_2017, Watanabe_2019
155 Borrow_2006 Cytotoxic T‐lymphocyte escape viral variants: how important are they in viral evasion of immune clearance in vivo? Borrow, Persephone; Shaw, George M. 2006 2006-04-28 PMC N PMC7165923 9795762.0 10.1111/j.1600-065x.1998.tb01206.x 7o6htufh 0.574652 Trobaugh_2017, Berkhout_2006, Rivas_2016
156 Cullen_2009 Viral RNAs: Lessons from the Enemy Cullen, Bryan R. 2009 2009-02-20 PMC N PMC7127818 19239880.0 10.1016/j.cell.2009.01.048 0e9lonq4 0.570366 Trobaugh_2017, Denison_2008 Chemudupati_2019
157 Grove_2011 The cell biology of receptor-mediated virus entry Grove, Joe; Marsh, Mark 2011 2011-12-26 NONCOMM N PMC3246895 22123832.0 10.1083/jcb.201108131 v4op73hf 0.565609 Mao_J_2019, Kindler_2014 Giorda_2013
158 Du_S_2018 Viral-Mediated mRNA Degradation for Pathogenesis Du, Shujuan; Liu, Xiaoqing; Cai, Qiliang 2018 2018-11-29 COMM-USE N PMC6315618 30501096.0 10.3390/biomedicines6040111 4k5exdes 0.560610 Mao_J_2019, Trobaugh_2017, Kim_S_2018 Abernathy_2015, Gaucherand_2019, Meyers_2011
159 Zhang_2013 Long noncoding RNAs and viral infections Zhang, Quan; Jeang, Kuan-Teh 2013 2013-03-31 PMC N PMC3641704 23645970.0 10.1016/j.biomed.2013.01.001 duu77yzu 0.560105 Trobaugh_2017, Yasuda-Inoue_2013, Poltronieri_2015 Poltronieri_2015
160 Taschuk_2020 DEAD-Box Helicases: Sensors, Regulators, and Effectors for Antiviral Defense Taschuk, Frances; Cherry, Sara 2020 2020-02-05 COMM-USE N PMC7077277 32033386.0 10.3390/v12020181 670yseio 0.560024 Yasuda-Inoue_2013, Li_Z_2011, Shi_J_2012, Klein_2011 Fullam_2013, Yasuda-Inoue_2013
161 Cross_2019 RNA regulatory processes in RNA virus biology Cross, Shaun T.; Michalski, Daniel; Miller, Megan R.; Wilusz, Jeffrey 2019 2019-04-29 PMC N PMC6697219 31034160.0 10.1002/wrna.1536 w5kcno1b 0.559212 Trobaugh_2017, Haasnoot_2010, Berkhout_2006, Herbert_2016, Abernathy_2015
162 Zhao_2011 Virus interactions with human signal transduction pathways Zhao, Zhongming; Xia, Junfeng; Tastan, Oznur; Singh, Irtisha; Kshirsagar, Meghana; Carbonell, Jaime; Klein-Seetharaman, Judith 2011 2011-01-01 PMC N PMC3407688 21330695.0 10.1504/ijcbdd.2011.038658 titmz5jo 0.558268 Berkhout_2006, Haasnoot_2010, Trobaugh_2017 Durmuş_2017, Zhang_2015, Chemudupati_2019, Kumar_2018
163 Paul_2014 Hepatitis C Virus RNA Replication and Assembly: Living on the Fat of the Land Paul, David; Madan, Vanesa; Bartenschlager, Ralf 2014 2014-11-12 PMC N 25525790.0 10.1016/j.chom.2014.10.008 vm2tk2eu 0.558023 Mao_J_2019, den_Boon_2010, Berkhout_2006, Shi_J_2012
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165 Frieman_2014 The art of war: battles between virus and host Frieman, Matthew 2014 2014-06-30 None N PMC4422063 24886699.0 10.1016/j.coviro.2014.05.001 7urp431m 0.555904 Denison_2008, Alcami_2000 Rodríguez_2020
166 Cann_2016 Chapter 5 Expression Cann, Alan J. 2016 2016-12-31 PMC N 10.1016/b978-0-12-801946-7.00005-5 d47rpzcs 0.555904 Trobaugh_2017, Haasnoot_2010, Berkhout_2006, Herbert_2016
167 Narayanan_2013 Interplay between viruses and host mRNA degradation Narayanan, Krishna; Makino, Shinji 2013 2013-07-31 None N PMC3632658 23274304.0 10.1016/j.bbagrm.2012.12.003 685ro9u0 0.553852 Trobaugh_2017, Herbert_2016, Berkhout_2006, Shi_J_2012 Abernathy_2015, Gaucherand_2019, Berkhout_2006
168 Salas-Benito_2015 Viral Interference and Persistence in Mosquito-Borne Flaviviruses Salas-Benito, Juan Santiago; De Nova-Ocampo, Mónica 2015 2015-10-25 COMM-USE N PMC4637105 26583158.0 10.1155/2015/873404 662lpdx5 0.553541 Berkhout_2006
169 Liu_Y_2015 The Roles of Direct Recognition by Animal Lectins in Antiviral Immunity and Viral Pathogenesis Liu, Yang; Liu, Jianying; Pang, Xiaojing; Liu, Tao; Ning, Zhijie; Cheng, Gong 2015 2015-01-29 COMM-USE N PMC6272511 25642837.0 10.3390/molecules20022272 npug5c8p 0.552944 Kindler_2014, Taschuk_2020, Berkhout_2006
170 Mack_2012 Modulation of Autophagy-Like Processes by Tumor Viruses Mack, Hildegard I. D.; Munger, Karl 2012 2012-06-25 COMM-USE N PMC3901111 24710474.0 10.3390/cells1030204 j4iwq2ld 0.552781 Shi_J_2012, Berkhout_2006, Mao_J_2019, Kim_S_2018 Cheng_2014, Lee_H_2008, Espert_2007, Lin_L_2010
171 Gaur_2011 Influenza virus and cell signaling pathways Gaur, Pratibha; Munjal, Ashok; Lal, Sunil K. 2011 2011-06-01 PMC N PMC3539548 21629204.0 10.12659/msm.881801 jfrg9soy 0.552476 Mao_J_2019, Shi_J_2012 Cooray_2007
172 Zuñiga_2016 Virulence factors in porcine coronaviruses and vaccine design Zuñiga, Sonia; Pascual-Iglesias, Alejandro; Sanchez, Carlos M.; Sola, Isabel; Enjuanes, Luis 2016 2016-12-02 None N PMC5159199 27397100.0 10.1016/j.virusres.2016.07.003 1qjbuofz 0.552308 Berkhout_2006
173 Roberts_2009 Chapter 9 Viral Strategies to Subvert the Mammalian Translation Machinery Roberts, Lisa O.; Jopling, Catherine L.; Jackson, Richard J.; Willis, Anne E. 2009 2009-12-31 PMC N PMC7102724 20374746.0 10.1016/s1877-1173(09)90009-6 b37c8aye 0.551784 Trobaugh_2017, Herbert_2016, Berkhout_2006, Gaucherand_2019 Gaucherand_2019, Chemudupati_2019, Sasvari_2011
174 Yun_S_2013 Overview: Replication of porcine reproductive and respiratory syndrome virus Yun, Sang-Im; Lee, Young-Min 2013 2013-12-19 PMC N PMC7091224 24385346.0 10.1007/s12275-013-3431-z u2bbgn8k 0.551784 den_Boon_2010, Trobaugh_2017, Berkhout_2006
175 Lin_L_2010 Viral interactions with macroautophagy: A double-edged sword Lin, Liang-Tzung; Dawson, Paul W.H.; Richardson, Christopher D. 2010 2010-06-20 PMC N PMC7111941 20413139.0 10.1016/j.virol.2010.03.026 x27crdjj 0.551454 Kim_S_2018, Mao_J_2019, Shi_J_2012 Espert_2007, Huang_2019
176 Au_H_2014 Novel viral translation strategies Au, Hilda HT; Jan, Eric 2014 2014-07-08 PMC N PMC7169809 25045163.0 10.1002/wrna.1246 6zfwwybx 0.550742 Trobaugh_2017, Herbert_2016, Gaucherand_2019, Roberts_2009
177 Cook_2019 Location is everything: protein translocations as a viral infection strategy Cook, Katelyn C; Cristea, Ileana M 2019 2019-02-28 PMC N PMC6382524 30339987.0 10.1016/j.cbpa.2018.09.021 ghjzmeww 0.550581 Trobaugh_2017, Berkhout_2006, Shi_J_2012, Kim_S_2018 Fulcher_2011, Zhang_2015, Grangeon_2012, Watanabe_2019
178 Isaacson_2009 Ubiquitination, Ubiquitin-like Modifiers, and Deubiquitination in Viral Infection Isaacson, Marisa K.; Ploegh, Hidde L. 2009 2009-06-18 PMC N PMC7103382 19527883.0 10.1016/j.chom.2009.05.012 5gbhobw8 0.549985 Klein_2011, Berkhout_2006, Trobaugh_2017 Wimmer_2015, Bailey-Elkin_2017, Calistri_2014, van_Tol_2017
179 FENNER_1987 CHAPTER 4 Viral Replication FENNER, FRANK; BACHMANN, PETER A.; GIBBS, E. PAUL J.; MURPHY, FREDERICK A.; STUDDERT, MICHAEL J.; WHITE, DAVID O. 1987 1987-12-31 PMC N 10.1016/b978-0-12-253055-5.50008-6 3q9yr6np 0.549523 Trobaugh_2017, Berkhout_2006, den_Boon_2010, Haasnoot_2010
180 Poltronieri_2015 RNA Viruses: RNA Roles in Pathogenesis, Coreplication and Viral Load Poltronieri, Palmiro; Sun, Binlian; Mallardo, Massimo 2015 2015-10-23 NONCOMM N PMC4763971 27047253.0 10.2174/1389202916666150707160613 259cspey 0.548249 Trobaugh_2017, Herbert_2016, Yasuda-Inoue_2013 Trobaugh_2017, Diaz_2012, Wulan_2015
181 Chemudupati_2019 From APOBEC to ZAP: Diverse mechanisms used by cellular restriction factors to inhibit virus infections Chemudupati, Mahesh; Kenney, Adam D.; Bonifati, Serena; Zani, Ashley; McMichael, Temet M.; Wu, Li; Yount, Jacob S. 2019 2019-03-31 None N PMC6334645 30290238.0 10.1016/j.bbamcr.2018.09.012 vplm0lpq 0.548079 den_Boon_2010, Trobaugh_2017, Yasuda-Inoue_2013 Neufeldt_2016
182 Stapleford_2010 Role of Cellular Lipids in Positive-Sense RNA Virus Replication Complex Assembly and Function Stapleford, Kenneth A.; Miller, David J. 2010 2010-04-29 COMM-USE N PMC3187604 21994671.0 10.3390/v2051055 ayacjojb 0.547801 den_Boon_2010, Trobaugh_2017, Berkhout_2006 Diaz_2012, Neufeldt_2016, Wulan_2015, Harak_2015
183 Mao_J_2019 Autophagy and Viral Infection Mao, Jingrong; Lin, Eena; He, Lian; Yu, Jiaming; Tan, Peng; Zhou, Yubin 2019 2019-11-15 PMC N PMC7122562 31728865.0 10.1007/978-981-15-0606-2_5 j2bb6eq8 0.546211 Kim_S_2018 Lee_H_2008, Choi_2018, Shoji-Kawata_2009, Cheng_2014
184 Richard_2012 Caspase cleavage of viral proteins, another way for viruses to make the best of apoptosis Richard, A; Tulasne, D 2012 2012-03-08 NONCOMM N PMC3317351 22402601.0 10.1038/cddis.2012.18 3hxau5vt 0.545276 Berkhout_2006, Klein_2011, Shi_J_2012, Cheng_2014, Rivas_2016 Galluzzi_2008, Chemudupati_2019
185 Teissier_2010 Targeting Cell Entry of Enveloped Viruses as an Antiviral Strategy Teissier, Elodie; Penin, François; Pécheur, Eve-Isabelle 2010 2010-12-30 COMM-USE N PMC6259279 21193846.0 10.3390/molecules16010221 nqw6y8ku 0.545257 Berkhout_2006, Trobaugh_2017, Kindler_2014 Watanabe_2019, A_Abdullah_2018
186 Emonet_2011 Arenavirus reverse genetics: New approaches for the investigation of arenavirus biology and development of antiviral strategies Emonet, Sebastien E.; Urata, Shuzo; de la Torre, Juan C. 2011 2011-03-15 PMC N PMC3057228 21324503.0 10.1016/j.virol.2011.01.013 lt8j5wjs 0.545168
187 Schlesinger_1993 Alphaviruses — vectors for the expression of heterologous genes Schlesinger, Sondra 1993 1993-01-31 PMC N 7764041.0 10.1016/0167-7799(93)90070-p 884d196k 0.544929 den_Boon_2010, Trobaugh_2017, Payne_2017
188 Nagy_2010 Chapter 4 Global Genomics and Proteomics Approaches to Identify Host Factors as Targets to Induce Resistance Against Tomato Bushy Stunt Virus Nagy, Peter D.; Pogany, Judit 2010 2010-12-31 PMC N 10.1016/s0065-3527(10)76004-8 cob7a5uh 0.537690 den_Boon_2010, Berkhout_2006, Trobaugh_2017, Herbert_2016
189 Wimmer_2015 Viral Mimicry to Usurp Ubiquitin and SUMO Host Pathways Wimmer, Peter; Schreiner, Sabrina 2015 2015-08-28 COMM-USE N PMC4584293 26343706.0 10.3390/v7092849 vy4hfd62 0.537340 Viswanathan_2010, Taschuk_2020, Bailey-Elkin_2017, Berkhout_2006, Trobaugh_2017 van_Tol_2017, Bailey-Elkin_2017, Fung_2018
190 Yoo_D_2010 Modulation of host cell responses and evasion strategies for porcine reproductive and respiratory syndrome virus Yoo, Dongwan; Song, Cheng; Sun, Yan; Du, Yijun; Kim, Oekyung; Liu, Hsiao-Ching 2010 2010-12-31 PMC N PMC7114477 20655963.0 10.1016/j.virusres.2010.07.019 fp3wppsg 0.537021 Kindler_2014, Mao_J_2019, Viswanathan_2010
191 Checconi_2019 Role of Glutathionylation in Infection and Inflammation Checconi, Paola; Limongi, Dolores; Baldelli, Sara; Ciriolo, Maria Rosa; Nencioni, Lucia; Palamara, Anna Teresa 2019 2019-08-20 COMM-USE N PMC6723385 31434242.0 10.3390/nu11081952 bg3b88us 0.534059 Viswanathan_2010, Shi_J_2012, Taschuk_2020 Zhang_2015
192 Komarova_2009 Chapter 3 Virus Versus Host Cell Translation Love and Hate Stories Komarova, Anastassia V.; Haenni, Anne-Lise; Ramírez, Bertha Cecilia 2009 2009-12-31 PMC N PMC7112309 19695382.0 10.1016/s0065-3527(09)73003-9 e6hnybe5 0.534059 Trobaugh_2017, Roberts_2009, Berkhout_2006, Haasnoot_2010, Abernathy_2015 Roberts_2009, Sasvari_2011, Jaafar_2018
193 Rampersad_2018 Chapter 3 Replication and Expression Strategies of Viruses Rampersad, Sephra; Tennant, Paula 2018 2018-12-31 PMC N PMC7158166 10.1016/b978-0-12-811257-1.00003-6 tvdx9gkk 0.533244 den_Boon_2010, Trobaugh_2017, Berkhout_2006, Hull_2014, Haasnoot_2010 Bagga_2014, Giorda_2013, Netherton_2007, Wulan_2015
194 Galao_2007 Saccharomyces cerevisiae: a versatile eukaryotic system in virology Galao, Rui P; Scheller, Nicoletta; Alves-Rodrigues, Isabel; Breinig, Tanja; Meyerhans, Andreas; Díez, Juana 2007 2007-10-10 COMM-USE N PMC2148055 17927824.0 10.1186/1475-2859-6-32 ffn59sgf 0.532284 Berkhout_2006, Shi_J_2012, Taschuk_2020 Alves-Rodrigues_2006, Hughes_2012, Zhao_2017, Andréola_2012
195 Rodríguez_2020 Chapter 3 Viral Emerging Pathogen Evolution Rodríguez, Virginia; Lagares, Alfredo; Arteaga, Heiser; Mattar, Salim; Ruiz, Luis Carlos 2020 2020-12-31 PMC N PMC7149897 10.1016/b978-0-12-819400-3.00003-x f3g3ek5u 0.531792 Denison_2008, Rivas_2016, Berkhout_2006 Galluzzi_2008, Koonin_2013
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197 Levene_2018 Host Shutoff in Influenza A Virus: Many Means to an End Levene, Rachel Emily; Gaglia, Marta Maria 2018 2018-09-05 COMM-USE N PMC6165434 30189604.0 10.3390/v10090475 84fv3na7 0.529693 Trobaugh_2017, den_Boon_2010 Gaucherand_2019, Chemudupati_2019
198 Tan_Y_2007 Regulation of cell death during infection by the severe acute respiratory syndrome coronavirus and other coronaviruses Tan, Yee‐Joo; Lim, Seng Gee; Hong, Wanjin 2007 2007-08-20 PMC N PMC7162196 17714515.0 10.1111/j.1462-5822.2007.01034.x gs80celr 0.529161 Trobaugh_2017, Berkhout_2006, Shi_J_2012, Mao_J_2019
199 Fulcher_2011 Regulation of nucleocytoplasmic trafficking of viral proteins: An integral role in pathogenesis? Fulcher, Alex J.; Jans, David A. 2011 2011-12-31 PMC N PMC7114211 21530593.0 10.1016/j.bbamcr.2011.03.019 wggzeqwe 0.528288 Trobaugh_2017, Yasuda-Inoue_2013, Tessier_2019 Yarbrough_2013, Zhang_2015, Wulan_2015
200 J_Alsaadi_2019 Membrane binding proteins of coronaviruses J Alsaadi, Entedar A; Jones, Ian M 2019 2019-04-29 NONCOMM N PMC7079996 10.2217/fvl-2018-0144 0hwbmf8k 0.528279 den_Boon_2010, Volmer_2010 Zhang_2015, Watanabe_2019
201 Netherton_2007 A Guide to Viral Inclusions, Membrane Rearrangements, Factories, and Viroplasm Produced During Virus Replication Netherton, Christopher; Moffat, Katy; Brooks, Elizabeth; Wileman, Thomas 2007 2007-12-31 PMC N PMC7112299 17765705.0 10.1016/s0065-3527(07)70004-0 7gpije5d 0.527466 den_Boon_2010, Mao_J_2019, Berkhout_2006 Wulan_2015, Bagga_2014, Neufeldt_2016
202 McFadden_2017 Protect this house: cytosolic sensing of viruses McFadden, Michael J; Gokhale, Nandan S; Horner, Stacy M 2017 2017-02-28 PMC N 27951430.0 10.1016/j.coviro.2016.11.012 73xcpknl 0.527123 Kindler_2014, Shi_J_2012, Berkhout_2006
203 Domingo_2016 Chapter 4 Interaction of Virus Populations with Their Hosts Domingo, Esteban 2016 2016-12-31 PMC N PMC7150142 10.1016/b978-0-12-800837-9.00004-6 bl5bagvg 0.526942 Rivas_2016 Rodríguez_2020, Giorda_2013
204 Abdoli_2018 Autophagy: The multi‐purpose bridge in viral infections and host cells Abdoli, Asghar; Alirezaei, Mehrdad; Mehrbod, Parvaneh; Forouzanfar, Faezeh 2018 2018-04-30 PMC N PMC7169200 29709097.0 10.1002/rmv.1973 vr6tqiqu 0.526942 Mao_J_2019
205 Gordon_2019 Host and Viral Proteins Modulating Ebola and Marburg Virus Egress Gordon, Tamsin B.; Hayward, Joshua A.; Marsh, Glenn A.; Baker, Michelle L.; Tachedjian, Gilda 2019 2019-01-03 COMM-USE N PMC6357148 30609802.0 10.3390/v11010025 2l40gqk3 0.525903 den_Boon_2010, Mao_J_2019, Klein_2011 Sun_D_2016, Zhang_2015, Fulcher_2011
206 Sir_D_2010 Autophagy in viral replication and pathogenesis Sir, Donna; Ou, Jing-hsiung James 2010 2010-01-08 None N PMC3115743 20077024.0 10.1007/s10059-010-0014-2 m1wm72do 0.525564 Shi_J_2012, Kim_S_2018, Cheng_2014 Cheng_2014, Lin_L_2010, Lee_H_2008, Espert_2007
207 Cann_2016 Chapter 4 Replication Cann, Alan J. 2016 2016-12-31 PMC N PMC7149640 10.1016/b978-0-12-801946-7.00004-3 2d9yu7jw 0.524321 Denison_2008, Berkhout_2006, Shi_J_2012, Hull_2014 Sun_D_2016, Mainou_2017
208 Cautain_2014 Components and regulation of nuclear transport processes Cautain, Bastien; Hill, Richard; de Pedro, Nuria; Link, Wolfgang 2014 2014-12-22 PMC N PMC7163960 25429850.0 10.1111/febs.13163 sj4uvike 0.523595 Tessier_2019, Trobaugh_2017, Berkhout_2006, Dubois_2016, Haasnoot_2010
209 Agudelo-Romero_2008 Virus Adaptation by Manipulation of Host's Gene Expression Agudelo-Romero, Patricia; Carbonell, Pablo; Perez-Amador, Miguel A.; Elena, Santiago F. 2008 2008-06-11 COMM-USE N PMC2398778 18545680.0 10.1371/journal.pone.0002397 3ib99gup 0.522486 Berkhout_2006, Rivas_2016, Trobaugh_2017, Kindler_2014 Rodríguez_2020, Galluzzi_2008
210 Raniga_2018 Interferons: Reprogramming the Metabolic Network against Viral Infection Raniga, Kavita; Liang, Chen 2018 2018-01-13 COMM-USE N PMC5795449 29342871.0 10.3390/v10010036 9cpgd8sc 0.522128 Herbert_2016, Trobaugh_2017, Mao_J_2019 Chemudupati_2019
211 Cong_2017 The Interaction between Nidovirales and Autophagy Components Cong, Yingying; Verlhac, Pauline; Reggiori, Fulvio 2017 2017-07-11 COMM-USE N PMC5537674 28696396.0 10.3390/v9070182 qnn9hp8e 0.521805 Klein_2011, Shi_J_2012, Taschuk_2020, Berkhout_2006, den_Boon_2010 Lin_L_2010, Huang_2019, Ávila-Pérez_2019
212 Walker_2011 Rhabdovirus accessory genes Walker, Peter J.; Dietzgen, Ralf G.; Joubert, D. Albert; Blasdell, Kim R. 2011 2011-12-31 PMC N PMC7114375 21933691.0 10.1016/j.virusres.2011.09.004 goidlh08 0.520988 Taschuk_2020, Berkhout_2006, Haasnoot_2010, Trobaugh_2017 Sun_D_2016
213 Houzet_2011 Genome-wide screening using RNAi (RNA interference) to study host factors in viral replication and pathogenesis Houzet, Laurent; Jeang, Kuan-Teh 2011 2011-08-01 PMC N PMC3415036 21727185.0 10.1258/ebm.2010.010272 bd34mx77 0.520436 Berkhout_2006, Trobaugh_2017, Haasnoot_2010, Shi_J_2012
214 Amaya_2014 The role of the IKK complex in viral infections Amaya, Moushimi; Keck, Forrest; Bailey, Charles; Narayanan, Aarthi 2014 2014-10-01 PMC N PMC7108545 25082354.0 10.1111/2049-632x.12210 zsa23vhy 0.518591 Berkhout_2006, Shi_J_2012, Trobaugh_2017 van_Tol_2017
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299 Li_Z_2011 Diverse roles of host RNA-binding proteins in RNA virus replication Li, Zhenghe; Nagy, Peter D 2011 2011-03-01 PMC N PMC3230553 21505273.0 10.4161/rna.8.2.15391 iu3dg7y1 0.433493 Taschuk_2020, Yasuda-Inoue_2013, den_Boon_2010 Li_Z_2009
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301 Campos_2017 Subcellular Trafficking of the Papillomavirus Genome during Initial Infection: The Remarkable Abilities of Minor Capsid Protein L2 Campos, Samuel K. 2017 2017-12-03 COMM-USE N PMC5744145 29207511.0 10.3390/v9120370 84np9brx 0.432729 Trobaugh_2017, Tessier_2019, Berkhout_2006, den_Boon_2010 Fulcher_2011
302 Florin_2018 Tetraspanin Assemblies in Virus Infection Florin, Luise; Lang, Thorsten 2018 2018-05-25 COMM-USE N PMC5981178 29887866.0 10.3389/fimmu.2018.01140 5da6ph0y 0.430100 Trobaugh_2017, Tessier_2019 Zhang_2015, Fulcher_2011, Sun_D_2016
303 Davy_2007 G2/M cell cycle arrest in the life cycle of viruses Davy, Clare; Doorbar, John 2007 2007-11-25 PMC N PMC7103309 17675127.0 10.1016/j.virol.2007.05.043 siyc9g76 0.429126 Bagga_2014, Berkhout_2006, Trobaugh_2017, Klein_2011 Bagga_2014
304 Yip_S_2011 The Multifunctional Nucleolar Protein Nucleophosmin/NPM/B23 and the Nucleoplasmin Family of Proteins Yip, Shea Ping; Siu, Parco M.; Leung, Polly H. M.; Zhao, Yanxiang; Yung, Benjamin Y. M. 2011 2011-05-23 PMC N PMC7121557 10.1007/978-1-4614-0514-6_10 qpdy1guy 0.428911 Dubois_2016, Volmer_2010, Haasnoot_2010, Yasuda-Inoue_2013 Zhang_2015, Fulcher_2011
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311 Matthews_2011 Viruses and the Nucleolus Matthews, David; Emmott, Edward; Hiscox, Julian 2011 2011-05-23 PMC N PMC7121007 10.1007/978-1-4614-0514-6_14 x8t3lf1x 0.423772 den_Boon_2010, Trobaugh_2017, Berkhout_2006, Taschuk_2020 Wulan_2015, Wang_2010, Fulcher_2011, Hiscox_2007
312 Louten_2016 Chapter 3 Features of Host Cells Cellular and Molecular Biology Review Louten, Jennifer 2016 2016-12-31 PMC N PMC7149772 10.1016/b978-0-12-800947-5.00003-x bwm1fl8f 0.422177 den_Boon_2010, Stork_2011, Trobaugh_2017 Villanueva_2005, Wulan_2015
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314 León-Juárez_2017 Cellular and molecular mechanisms of viral infection in the human placenta León-Juárez, Moises; Martínez–Castillo, Macario; González-García, Luis Didier; Helguera-Repetto, Addy Cecilia; Zaga-Clavellina, Verónica; García-Cordero, Julio; Flores-Pliego, Arturo; Herrera-Salazar, Alma; Vázquez-Martínez, Edgar Ricardo; Reyes-Muñoz, Enrique 2017 2017-07-29 PMC N PMC7108519 28903546.0 10.1093/femspd/ftx093 yjv9flei 0.418978 Shi_J_2012, Kim_S_2018, Mao_J_2019
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316 Yuan_2019 SREBP-dependent lipidomic reprogramming as a broad-spectrum antiviral target Yuan, Shuofeng; Chu, Hin; Chan, Jasper Fuk-Woo; Ye, Zi-Wei; Wen, Lei; Yan, Bingpeng; Lai, Pok-Man; Tee, Kah-Meng; Huang, Jingjing; Chen, Dongdong; Li, Cun; Zhao, Xiaoyu; Yang, Dong; Chiu, Man Chun; Yip, Cyril; Poon, Vincent Kwok-Man; Chan, Chris Chung-Sing; Sze, Kong-Hung; Zhou, Jie; Chan, Ivy Hau-Yee; Kok, Kin-Hang; To, Kelvin Kai-Wang; Kao, Richard Yi-Tsun; Lau, Johnson Yiu-Nam; Jin, Dong-Yan; Perlman, Stanley; Yuen, Kwok-Yung 2019 2019-01-10 None N PMC6328544 30631056.0 10.1038/s41467-018-08015-x m7toy4j0 0.417382 Berkhout_2006, Trobaugh_2017, Shi_J_2012 Mingorance_2018, Albert_2018
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322 A_Abdullah_2018 Cyclophilin A as a target in the treatment of cytomegalovirus infections A Abdullah, Ashwaq; Abdullah, Rasedee; A Nazariah, Zeenathul; N Balakrishnan, Krishnan; Firdaus J Abdullah, Faez; A Bala, Jamilu; Mohd-Lila, Mohd-Azmi 2018 2018-11-18 NONCOMM N PMC6243413 30449131.0 10.1177/2040206618811413 bmok0jqa 0.413425 Berkhout_2006, Trobaugh_2017, Mao_J_2019, Shi_J_2012 Hopkins_2015
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328 Hossain_2020 Impact of the Interaction of Hepatitis B Virus with Mitochondria and Associated Proteins Hossain, Md. Golzar; Akter, Sharmin; Ohsaki, Eriko; Ueda, Keiji 2020 2020-02-04 COMM-USE N PMC7077294 32033216.0 10.3390/v12020175 6qoewbf1 0.406456 Trobaugh_2017, Berkhout_2006, Klein_2011, Haasnoot_2010, Mao_J_2019
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330 Risco_2013 Virus Morphogenesis in the Cell: Methods and Observations Risco, Cristina; Fernández de Castro, Isabel 2013 2013-02-16 PMC N PMC7121607 23737060.0 10.1007/978-94-007-6552-8_14 mkibohiw 0.403219 Denison_2008, Cullen_2009, Trobaugh_2017, Marsh_2006 Giorda_2013, Wulan_2015, Sachse_2019
331 Dreux_2011 Impact of the Autophagy Machinery on Hepatitis C Virus Infection Dreux, Marlène; Chisari, Francis V. 2011 2011-08-04 COMM-USE N PMC3185811 21994783.0 10.3390/v3081342 tzv2ntev 0.402039 Shi_J_2012, Berkhout_2006, Klein_2011, Cheng_2014, Mao_J_2019 Lee_H_2008, Lin_L_2010, Cheng_2014
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333 Saura_1999 An Antiviral Mechanism of Nitric Oxide Inhibition of a Viral Protease Saura, Marta; Zaragoza, Carlos; McMillan, Audrey; Quick, Richard A; Hohenadl, Christine; Lowenstein, John M; Lowenstein, Charles J 1999 1999-01-01 PMC N PMC7129050 10023767.0 10.1016/s1074-7613(00)80003-5 le034mvq 0.401579 Viswanathan_2010, Tang_2018
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335 Zhang_2014 The Regulation of Autophagy by Influenza A Virus Zhang, Rong; Chi, Xiaojuan; Wang, Song; Qi, Baomin; Yu, Xiaoqiang; Chen, Ji-Long 2014 2014-03-23 COMM-USE N PMC3980786 24779013.0 10.1155/2014/498083 f76ktynl 0.399506 Mao_J_2019 Espert_2007, Aweya_2013, Ding_2017
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338 Klein_2011 Picornavirus Subversion of the Autophagy Pathway Klein, Kathryn A.; Jackson, William T. 2011 2011-08-26 COMM-USE N PMC3187694 21994795.0 10.3390/v3091549 v3w6eu5y 0.395974 Shi_J_2012, Taschuk_2020, Berkhout_2006, Mao_J_2019 Sun_D_2016, Lin_L_2010, Ding_2017
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344 Neuman_2014 Does form meet function in the coronavirus replicative organelle? Neuman, Benjamin W.; Angelini, Megan M.; Buchmeier, Michael J. 2014 2014-11-30 PMC N PMC7127430 25037114.0 10.1016/j.tim.2014.06.003 6s01qplg 0.392013 den_Boon_2010, Trobaugh_2017, Volmer_2010, Taschuk_2020 Wulan_2015, Diaz_2012, V’kovski_2015
345 Liu_Y_2012 Infectomics Screening for Novel Antiviral Drug Targets Liu, Yuan; Yin, Qi; Yuan, Yao; Yang, Wenyong; Jiang, Chuangui; Huang, Canhua 2012 2012-10-16 PMC N PMC7163650 10.1002/ddr.21027 qh3q2ncu 0.391698 Berkhout_2006, Trobaugh_2017, Haasnoot_2010, Shi_J_2012
346 Ladygina_2011 Dynamic Palmitoylation and the Role of DHHC Proteins in T Cell Activation and Anergy Ladygina, Nadejda; Martin, Brent R.; Altman, Amnon 2011 2011-01-01 PMC N PMC5464999 21569911.0 10.1016/b978-0-12-387664-5.00001-7 9vkydl83 0.391577 Zhang_2015
347 Halder_2017 Review of computational methods for virus–host protein interaction prediction: a case study on novel Ebola–human interactions Halder, Anup Kumar; Dutta, Pritha; Kundu, Mahantapas; Basu, Subhadip; Nasipuri, Mita 2017 2017-09-26 PMC N PMC7109800 29028879.0 10.1093/bfgp/elx026 72vya0vu 0.390812 Berkhout_2006, Trobaugh_2017, Haasnoot_2010 Goodacre_2020, Han_L_2017, Durmuş_2017
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351 Subramani_2013 Non-autophagic roles of autophagy-related proteins Subramani, Suresh; Malhotra, Vivek 2013 2013-01-22 PMC N PMC3566844 23337627.0 10.1038/embor.2012.220 06tmebvv 0.388315 Hurley_2014, Shi_J_2012 Tanida_2004, Espert_2007, Cheng_2014
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380 Rossignol_2015 The Role of Electron Microscopy in Studying the Continuum of Changes in Membranous Structures during Poliovirus Infection Rossignol, Evan D.; Yang, Jie E.; Bullitt, Esther 2015 2015-10-12 COMM-USE N PMC4632382 26473912.0 10.3390/v7102874 az2hdsob 0.359023 den_Boon_2010, Trobaugh_2017, Volmer_2010 Zhang_2015, Wulan_2015
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