Topic 08 -- Abstracts with Biological Entities (English) - 75 Topics / Sub-Topic Model 12 - 15 Topics

cite ad title authors publish year publish time dataset abstract mentions covid pmcid pubmed id doi cord uid topic weight Similarity scispacy Similarity specter
1 White_2006 Identification of mouse hepatitis coronavirus A59 nucleocapsid protein phosphorylation sites White, Tiana C.; Yi, Zhengping; Hogue, Brenda G. 2006 2006-01-01 None N PMC3764311 17037524.0 10.1007/978-0-387-33012-9_28 mivgokj0 0.986768 Volmer_2010, Stork_2011 White_2007, Zhang_2015
2 White_2007 Identification of mouse hepatitis coronavirus A59 nucleocapsid protein phosphorylation sites White, Tiana C.; Yi, Zhengping; Hogue, Brenda G. 2007 2007-06-30 None N PMC2001268 17367888.0 10.1016/j.virusres.2007.02.008 w07zxw33 0.961040 Volmer_2010, Stork_2011 White_2006, Zhang_2015
3 Kirchdoerfer_2019 Structure of the SARS-CoV nsp12 polymerase bound to nsp7 and nsp8 co-factors Kirchdoerfer, Robert N.; Ward, Andrew B. 2019 2019-05-28 None N PMC6538669 31138817.0 10.1038/s41467-019-10280-3 gybjij1l 0.849974 Stork_2011, Yasuda-Inoue_2013, den_Boon_2010 Kirchdoerfer_2019
4 Kirchdoerfer_2019 Structure of the SARS-CoV NSP12 polymerase bound to NSP7 and NSP8 co-factors Robert N. Kirchdoerfer; Andrew B. Ward 2019 2019-02-15 BioRxiv N 10.1101/551986 tz3ik2b5 0.745371 den_Boon_2010, Stork_2011 Kirchdoerfer_2019
5 Calvo_2012 Severe acute respiratory syndrome coronavirus accessory proteins 6 and 9b interact in vivo Calvo, Enrique; DeDiego, Marta L.; García, Pilar; López, Juan A.; Pérez-Breña, Pilar; Falcón, Ana 2012 2012-10-31 PMC N PMC7114373 22820404.0 10.1016/j.virusres.2012.07.012 bomn9bvt 0.707567 Volmer_2010, Li_C_2013
6 Spencer_2008 Role of phosphorylation clusters in the biology of the coronavirus infectious bronchitis virus nucleocapsid protein Spencer, Kelly-Anne; Dee, Michael; Britton, Paul; Hiscox, Julian A. 2008 2008-01-20 PMC N PMC7103301 17931676.0 10.1016/j.virol.2007.08.016 wovftw3l 0.700563 Zhang_2015
7 Bartlam_2005 Structural insights into SARS coronavirus proteins Bartlam, Mark; Yang, Haitao; Rao, Zihe 2005 2005-12-31 PMC N PMC7127763 16263266.0 10.1016/j.sbi.2005.10.004 mnyqogdw 0.566505 Trobaugh_2017, den_Boon_2010, Taschuk_2020, Haasnoot_2010
8 Jourdan_2012 Biophysical characterisation of the nucleocapsid protein from a highly pathogenic porcine reproductive and respiratory syndrome virus strain Jourdan, Stefanie S.; Osorio, Fernando A.; Hiscox, Julian A. 2012 2012-03-09 PMC N PMC7092862 22306009.0 10.1016/j.bbrc.2011.11.126 e0wfn9fz 0.561197 Stork_2011 Zhang_2015
9 Weiss_2011 Chapter 4 Coronavirus Pathogenesis Weiss, Susan R.; Leibowitz, Julian L. 2011 2011-12-31 PMC N PMC7149603 22094080.0 10.1016/b978-0-12-385885-6.00009-2 ugv21b9b 0.561077 Trobaugh_2017, Berkhout_2006, Haasnoot_2010
10 Connor_2007 Unique SARS-CoV protein nsp1: bioinformatics, biochemistry and potential effects on virulence Connor, Ramsey F.; Roper, Rachel L. 2007 2007-02-28 PMC N PMC7127589 17207625.0 10.1016/j.tim.2006.12.005 sq9hh50d 0.560053 Bartlam_2005
11 Curran_1991 Characterization of the Sendai virus V protein with an anti-peptide antiserum Curran, Joseph; De Melo, Merivane; Moyer, Sue; Kolakofsky, Daniel 1991 1991-09-30 PMC N PMC7130646 1651586.0 10.1016/0042-6822(91)90827-x c0jkyvnc 0.542153 Volmer_2010, Shi_S_2000
12 Oudshoorn_2017 Expression and Cleavage of Middle East Respiratory Syndrome Coronavirus nsp3-4 Polyprotein Induce the Formation of Double-Membrane Vesicles That Mimic Those Associated with Coronaviral RNA Replication Oudshoorn, Diede; Rijs, Kevin; Limpens, Ronald W. A. L.; Groen, Kevin; Koster, Abraham J.; Snijder, Eric J.; Kikkert, Marjolein; Bárcena, Montserrat 2017 2017-11-21 COMM-USE N PMC5698553 29162711.0 10.1128/mbio.01658-17 upcf15q5 0.521050 Yasuda-Inoue_2013, Stork_2011, Li_C_2013, den_Boon_2010
13 Pendleton_2007 Generating Antibodies to the Gene 3 Proteins of Infectious Bronchitis Virus Pendleton, Amanda R.; Machamer, Carolyn E. 2007 2007-11-28 PMC N PMC7120050 19057877.0 10.1007/978-1-59745-181-9_14 dc7yclsz 0.512905 Volmer_2010, Li_C_2013, Li_C_2014
14 Grunewald_2018 The coronavirus nucleocapsid protein is ADP-ribosylated Grunewald, Matthew E.; Fehr, Anthony R.; Athmer, Jeremiah; Perlman, Stanley 2018 2018-04-30 PMC N PMC5871557 29199039.0 10.1016/j.virol.2017.11.020 8hw80qx8 0.482871 Li_C_2014 Zhang_2015
15 Kong_2015 Interactions among SARS-CoV accessory proteins revealed by bimolecular fluorescence complementation assay Kong, Jianqiang; Shi, Yanwei; Wang, Zhifang; Pan, Yiting 2015 2015-06-06 None N PMC4629423 26579480.0 10.1016/j.apsb.2015.05.002 dc1rufc4 0.474715 Volmer_2010, Bansal_2020, Berkhout_2006 Zhang_2015
16 Cantoni_2018 Ebolaviruses: New roles for old proteins Cantoni, Diego; Rossman, Jeremy S. 2018 2018-05-03 COMM-USE N PMC5933699 29723187.0 10.1371/journal.pntd.0006349 lk2ny1wd 0.466458 den_Boon_2010 Zhang_2015
17 Li_S_2010 New nsp8 isoform suggests mechanism for tuning viral RNA synthesis Li, Shuang; Zhao, Qi; Zhang, Yinjie; Zhang, Yang; Bartlam, Mark; Li, Xuemei; Rao, Zihe 2010 2010-02-01 PMC N PMC4875168 21203988.0 10.1007/s13238-010-0028-8 gtajz6jr 0.448252 Stork_2011, den_Boon_2010
18 McBride_2014 The Coronavirus Nucleocapsid Is a Multifunctional Protein McBride, Ruth; van Zyl, Marjorie; Fielding, Burtram C. 2014 2014-08-07 COMM-USE N PMC4147684 25105276.0 10.3390/v6082991 8pkrg0mx 0.444757 Volmer_2010 Zhang_2015, Sun_D_2016
19 Peng_2008 Phosphorylation of the arginine/serine dipeptide‐rich motif of the severe acute respiratory syndrome coronavirus nucleocapsid protein modulates its multimerization, translation inhibitory activity and cellular localization Peng, Tsui‐Yi; Lee, Kuan‐Rong; Tarn, Woan‐Yuh 2008 2008-07-09 PMC N PMC7164085 18631359.0 10.1111/j.1742-4658.2008.06564.x raqropjb 0.435752 Volmer_2010
20 Wang_2010 Nsp1 proteins of group I and SARS coronaviruses share structural and functional similarities Wang, Yongjin; Shi, Huiling; Rigolet, Pascal; Wu, Nannan; Zhu, Lichen; Xi, Xu-Guang; Vabret, Astrid; Wang, Xiaoming; Wang, Tianhou 2010 2010-10-31 PMC N PMC7106014 20609418.0 10.1016/j.meegid.2010.05.014 3eatplc2 0.427945
21 Li_F_2005 Sumoylation of the nucleocapsid protein of severe acute respiratory syndrome coronavirus Li, Frank Qisheng; Xiao, Han; Tam, James P.; Liu, D.X. 2005 2005-04-25 PMC N PMC7094623 15848177.0 10.1016/j.febslet.2005.03.039 f6mlvl56 0.413977 Volmer_2010 Zhang_2015
22 Angelini_2013 Severe Acute Respiratory Syndrome Coronavirus Nonstructural Proteins 3, 4, and 6 Induce Double-Membrane Vesicles Angelini, Megan M.; Akhlaghpour, Marzieh; Neuman, Benjamin W.; Buchmeier, Michael J. 2013 2013-08-13 NONCOMM N PMC3747587 23943763.0 10.1128/mbio.00524-13 yl1qyh7j 0.411217 Volmer_2010, den_Boon_2010 Doyle_2018, Neufeldt_2016
23 Hussain_2010 SARS-coronavirus protein 6 conformations required to impede protein import into the nucleus Hussain, Snawar; Gallagher, Tom 2010 2010-11-30 None N PMC2954772 20800627.0 10.1016/j.virusres.2010.08.017 wm27coad 0.407766 Volmer_2010 Zhang_2015
24 Athmer_2017 In Situ Tagged nsp15 Reveals Interactions with Coronavirus Replication/Transcription Complex-Associated Proteins Athmer, Jeremiah; Fehr, Anthony R.; Grunewald, Matthew; Smith, Everett Clinton; Denison, Mark R.; Perlman, Stanley 2017 2017-01-31 COMM-USE N PMC5285509 28143984.0 10.1128/mbio.02320-16 pep6c0k2 0.402683 Yasuda-Inoue_2013, Volmer_2010, Stork_2011, Li_C_2013
25 Qin_P_2019 Characteristics of the Life Cycle of Porcine Deltacoronavirus (PDCoV) In Vitro: Replication Kinetics, Cellular Ultrastructure and Virion Morphology, and Evidence of Inducing Autophagy Qin, Pan; Du, En-Zhong; Luo, Wen-Ting; Yang, Yong-Le; Zhang, Yu-Qi; Wang, Bin; Huang, Yao-Wei 2019 2019-05-18 COMM-USE N PMC6563515 31109068.0 10.3390/v11050455 eo4le4v3 0.402105 Volmer_2010, den_Boon_2010, Quiner_2010, Terrier_2016 Sun_D_2016, Ding_2017
26 Yan_B_2019 Characterization of the Lipidomic Profile of Human Coronavirus-Infected Cells: Implications for Lipid Metabolism Remodeling upon Coronavirus Replication Yan, Bingpeng; Chu, Hin; Yang, Dong; Sze, Kong-Hung; Lai, Pok-Man; Yuan, Shuofeng; Shuai, Huiping; Wang, Yixin; Kao, Richard Yi-Tsun; Chan, Jasper Fuk-Woo; Yuen, Kwok-Yung 2019 2019-01-16 COMM-USE N PMC6357182 30654597.0 10.3390/v11010073 rgrt6e6r 0.398806 Mingorance_2018
27 Narayanan_2003 Characterization of N protein self-association in coronavirus ribonucleoprotein complexes Narayanan, Krishna; Kim, Kyongmin Hwang; Makino, Shinji 2003 2003-12-31 PMC N PMC7125804 14659560.0 10.1016/j.virusres.2003.08.021 67uqildl 0.398674 Stork_2011, den_Boon_2010 Zhang_2015
28 Brockway_2005 Mutagenesis of the murine hepatitis virus nsp1-coding region identifies residues important for protein processing, viral RNA synthesis, and viral replication Brockway, Sarah M.; Denison, Mark R. 2005 2005-09-30 PMC N PMC7111834 16051301.0 10.1016/j.virol.2005.06.035 tgpsu4qz 0.397260 Stork_2011
29 Jourdan_2012 An interactome map of the nucleocapsid protein from a highly pathogenic North American porcine reproductive and respiratory syndrome virus strain generated using SILAC‐based quantitative proteomics Jourdan, Stefanie S.; Osorio, Fernando; Hiscox, Julian A. 2012 2012-04-21 PMC N PMC7167637 22522808.0 10.1002/pmic.201100469 cd5vanvp 0.383852 den_Boon_2010, Volmer_2010, Stork_2011
30 Zuñiga_2016 Virulence factors in porcine coronaviruses and vaccine design Zuñiga, Sonia; Pascual-Iglesias, Alejandro; Sanchez, Carlos M.; Sola, Isabel; Enjuanes, Luis 2016 2016-12-02 None N PMC5159199 27397100.0 10.1016/j.virusres.2016.07.003 1qjbuofz 0.378551 Berkhout_2006
31 Surjit_2008 The SARS-CoV nucleocapsid protein: A protein with multifarious activities Surjit, Milan; Lal, Sunil K. 2008 2008-07-31 PMC N PMC7106238 17881296.0 10.1016/j.meegid.2007.07.004 iwkgxccy 0.374488 Haasnoot_2010 Sun_D_2016
32 Nan_H_2018 The Network of Interactions Among Porcine Reproductive and Respiratory Syndrome Virus Non-structural Proteins Nan, Hao; Lan, Jixun; Tian, Mengmeng; Dong, Shan; Tian, Jiao; Liu, Long; Xu, Xiaodong; Chen, Hongying 2018 2018-05-14 COMM-USE N PMC5960727 29867873.0 10.3389/fmicb.2018.00970 zd3ld539 0.366420 den_Boon_2010, Yasuda-Inoue_2013, Stork_2011 Zhang_2015
33 Ziebuhr_2004 Molecular biology of severe acute respiratory syndrome coronavirus Ziebuhr, John 2004 2004-08-31 PMC Y PMC7108451 15358261.0 10.1016/j.mib.2004.06.007 y64i8ui3 0.363971 den_Boon_2010 Bartlam_2005
34 Timani_2005 Nuclear/nucleolar localization properties of C-terminal nucleocapsid protein of SARS coronavirus Timani, Khalid Amine; Liao, Qingjiao; Ye, Linbai; Zeng, Yingchun; Liu, Jing; Zheng, Yi; Ye, Li; Yang, Xiaojun; Lingbao, Kong; Gao, Jingrong; Zhu, Ying 2005 2005-12-31 PMC Y PMC7114095 15992957.0 10.1016/j.virusres.2005.05.007 g5vcbn0n 0.363120 Volmer_2010 Zhang_2015
35 Sakai_2017 Two-amino acids change in the nsp4 of SARS coronavirus abolishes viral replication Sakai, Yusuke; Kawachi, Kengo; Terada, Yutaka; Omori, Hiroko; Matsuura, Yoshiharu; Kamitani, Wataru 2017 2017-10-31 PMC N PMC7111695 28738245.0 10.1016/j.virol.2017.07.019 slh52nxm 0.362944 den_Boon_2010, Volmer_2010, Yasuda-Inoue_2013, Stork_2011 Brockway_2005
36 Clementz_2008 Mutation in murine coronavirus replication protein nsp4 alters assembly of double membrane vesicles Clementz, Mark A.; Kanjanahaluethai, Amornrat; O'Brien, Timothy E.; Baker, Susan C. 2008 2008-05-25 PMC N PMC2443636 18295294.0 10.1016/j.virol.2008.01.018 jwflooop 0.360420 Stork_2011, Volmer_2010 Papa_2019
37 Zhang_2010 Quantitative Proteomics Analysis Reveals BAG3 as a Potential Target To Suppress Severe Acute Respiratory Syndrome Coronavirus Replication Zhang, Liang; Zhang, Zhi-Ping; Zhang, Xian-En; Lin, Fu-Sen; Ge, Feng 2010 2010-04-14 None Y PMC2876644 20392858.0 10.1128/jvi.00213-10 3yb2lbje 0.360285 Trobaugh_2017, Berkhout_2006, Haasnoot_2010
38 Yu_X_2015 VHL negatively regulates SARS coronavirus replication by modulating nsp16 ubiquitination and stability Yu, Xiao; Chen, Shuliang; Hou, Panpan; Wang, Min; Chen, Yu; Guo, Deyin 2015 2015-04-03 PMC N PMC7092858 25732088.0 10.1016/j.bbrc.2015.02.097 0bkvtaqx 0.358665 Yasuda-Inoue_2013, Stork_2011
39 Maier_2014 Spherules and IBV Maier, Helena J; Hawes, Philippa C; Keep, Sarah M; Britton, Paul 2014 2014-09-01 COMM-USE N PMC4156489 25482229.0 10.4161/bioe.29323 krufo80s 0.352644 den_Boon_2010
40 De_Haan_2006 Hosting the severe acute respiratory syndrome coronavirus: specific cell factors required for infection De Haan, Cornelis A. M.; Rottier, Peter J. M. 2006 2006-06-27 PMC N PMC7162409 16803585.0 10.1111/j.1462-5822.2006.00744.x bpuyrsza 0.348567 Shi_J_2012, Berkhout_2006, Rivas_2016, Cheng_2014, Trobaugh_2017
41 Cheng_2015 Severe acute respiratory syndrome coronavirus protein 6 mediates ubiquitin-dependent proteosomal degradation of N-Myc (and STAT) interactor Cheng, Weijia; Chen, Shiyou; Li, Ruiling; Chen, Yu; Wang, Min; Guo, Deyin 2015 2015-04-17 PMC N PMC7091177 25907116.0 10.1007/s12250-015-3581-8 8g6pcfvo 0.347118
42 Sungsuwan_2020 Nucleocapsid proteins from other swine enteric coronaviruses differentially modulate PEDV replication Sungsuwan, Suttipun; Jongkaewwattana, Anan; Jaru-Ampornpan, Peera 2020 2020-01-15 PMC N PMC7112109 31756532.0 10.1016/j.virol.2019.11.007 lkd2mj27 0.341720 Zhang_2015
43 You_J_2007 Trafficking motifs in the SARS-coronavirus nucleocapsid protein You, Jae-Hwan; Reed, Mark L.; Hiscox, Julian A. 2007 2007-07-13 PMC N PMC7092899 17524366.0 10.1016/j.bbrc.2007.05.036 cea11cyx 0.336288 Volmer_2010, Shi_S_2000 Zhang_2015, Timani_2005, Sun_D_2016
44 Pan_J_2008 Genome-Wide Analysis of Protein-Protein Interactions and Involvement of Viral Proteins in SARS-CoV Replication Pan, Ji'An; Peng, Xiaoxue; Gao, Yajing; Li, Zhilin; Lu, Xiaolu; Chen, Yingzhao; Ishaq, Musarat; Liu, Dan; DeDiego, Marta L.; Enjuanes, Luis; Guo, Deyin 2008 2008-10-01 COMM-USE N PMC2553179 18827877.0 10.1371/journal.pone.0003299 aqau2n7q 0.334914 Yasuda-Inoue_2013, Stork_2011
45 You_J_2008 A model for the dynamic nuclear/nucleolar/cytoplasmic trafficking of the porcine reproductive and respiratory syndrome virus (PRRSV) nucleocapsid protein based on live cell imaging You, Jae-Hwan; Howell, Gareth; Pattnaik, Asit K.; Osorio, Fernando A.; Hiscox, Julian A. 2008 2008-08-15 PMC N PMC7103367 18550142.0 10.1016/j.virol.2008.04.037 hx2rsi91 0.331741 Volmer_2010, Shi_S_2000, Narayanan_2003, Yasuda-Inoue_2013, Brunner_2010 Wulan_2015
46 Ziegler_2018 Host-Driven Phosphorylation Appears to Regulate the Budding Activity of the Lassa Virus Matrix Protein Ziegler, Christopher M.; Eisenhauer, Philip; Manuelyan, Inessa; Weir, Marion E.; Bruce, Emily A.; Ballif, Bryan A.; Botten, Jason 2018 2018-12-09 COMM-USE N PMC6313517 30544850.0 10.3390/pathogens7040097 kesr5rkj 0.326758 Volmer_2010 Sun_D_2016, Zhang_2015
47 von_Brunn_2007 Analysis of Intraviral Protein-Protein Interactions of the SARS Coronavirus ORFeome von Brunn, Albrecht; Teepe, Carola; Simpson, Jeremy C.; Pepperkok, Rainer; Friedel, Caroline C.; Zimmer, Ralf; Roberts, Rhonda; Baric, Ralph; Haas, Jürgen 2007 2007-05-23 COMM-USE N PMC1868897 17520018.0 10.1371/journal.pone.0000459 dlmx12vt 0.326575 Yasuda-Inoue_2013, Trobaugh_2017, den_Boon_2010, Stork_2011, Volmer_2010 Zhang_2015
48 Yoo_D_2010 Modulation of host cell responses and evasion strategies for porcine reproductive and respiratory syndrome virus Yoo, Dongwan; Song, Cheng; Sun, Yan; Du, Yijun; Kim, Oekyung; Liu, Hsiao-Ching 2010 2010-12-31 PMC N PMC7114477 20655963.0 10.1016/j.virusres.2010.07.019 fp3wppsg 0.315993 Kindler_2014, Mao_J_2019, Viswanathan_2010
49 de_Wilde_2017 Host Factors in Coronavirus Replication de Wilde, Adriaan H.; Snijder, Eric J.; Kikkert, Marjolein; van Hemert, Martijn J. 2017 2017-06-23 PMC N PMC7119980 28643204.0 10.1007/82_2017_25 ddza1x3z 0.315038 den_Boon_2010, Trobaugh_2017
50 Neuman_2011 A structural analysis of M protein in coronavirus assembly and morphology Neuman, Benjamin W.; Kiss, Gabriella; Kunding, Andreas H.; Bhella, David; Baksh, M. Fazil; Connelly, Stephen; Droese, Ben; Klaus, Joseph P.; Makino, Shinji; Sawicki, Stanley G.; Siddell, Stuart G.; Stamou, Dimitrios G.; Wilson, Ian A.; Kuhn, Peter; Buchmeier, Michael J. 2011 2011-04-30 None N PMC4486061 21130884.0 10.1016/j.jsb.2010.11.021 1eg1vf8b 0.311186 den_Boon_2010, Volmer_2010, Narayanan_2003, Trobaugh_2017 Zhang_2015, Popescu_2011
51 Xiao_2008 Coronavirus Spike Protein Inhibits Host Cell Translation by Interaction with eIF3f Xiao, Han; Xu, Ling Hui; Yamada, Yoshiyuki; Liu, Ding Xiang 2008 2008-01-30 COMM-USE N PMC2204050 18231581.0 10.1371/journal.pone.0001494 gstpi4mw 0.303830 Trobaugh_2017, Volmer_2010, Haasnoot_2010 Zhang_2015
52 Hagemeijer_2014 Membrane rearrangements mediated by coronavirus nonstructural proteins 3 and 4 Hagemeijer, Marne C.; Monastyrska, Iryna; Griffith, Janice; van der Sluijs, Peter; Voortman, Jarno; van Bergen en Henegouwen, Paul M.; Vonk, Annelotte M.; Rottier, Peter J.M.; Reggiori, Fulvio; de Haan, Cornelis A.M. 2014 2014-06-30 PMC N PMC7111329 24928045.0 10.1016/j.virol.2014.04.027 pz6t5eee 0.300931 Volmer_2010, Quiner_2010, den_Boon_2010