Topic 15 -- Abstracts with Biological Entities (English) - 75 Topics / Sub-Topic Model 12 - 15 Topics

cite ad title authors publish year publish time dataset abstract mentions covid pmcid pubmed id doi cord uid topic weight Similarity scispacy Similarity specter
1 Elwell_2011 Chlamydia trachomatis Co-opts GBF1 and CERT to Acquire Host Sphingomyelin for Distinct Roles during Intracellular Development Elwell, Cherilyn A.; Jiang, Shaobo; Kim, Jung Hwa; Lee, Albert; Wittmann, Torsten; Hanada, Kentaro; Melancon, Paul; Engel, Joanne N. 2011 2011-09-01 COMM-USE N PMC3164637 21909260.0 10.1371/journal.ppat.1002198 h35iocue 0.668258
2 Muller_2017 Nuclease escape elements protect messenger RNA against cleavage by multiple viral endonucleases Mandy Muller; Britt A. Glaunsinger 2017 2017-06-26 BioRxiv N 10.1101/155457 jhwjh12k 0.537157 Trobaugh_2017, Herbert_2016, Yasuda-Inoue_2013, Abernathy_2015 Muller_2017
3 Muller_2017 Nuclease escape elements protect messenger RNA against cleavage by multiple viral endonucleases Muller, Mandy; Glaunsinger, Britt A. 2017 2017-08-25 COMM-USE N PMC5589255 28841715.0 10.1371/journal.ppat.1006593 3tieiaiq 0.533762 Yasuda-Inoue_2013, Trobaugh_2017, Stork_2011, Herbert_2016 Muller_2017
4 Popescu_2014 Hepatitis C Virus Life Cycle and Lipid Metabolism Popescu, Costin-Ioan; Riva, Laura; Vlaicu, Ovidiu; Farhat, Rayan; Rouillé, Yves; Dubuisson, Jean 2014 2014-12-15 COMM-USE N PMC4280516 25517881.0 10.3390/biology3040892 h0n3qpjk 0.530355 Trobaugh_2017, den_Boon_2010 Mingorance_2018
5 Ning_2014 Viral suppression of innate immunity via spatial isolation of TBK1/IKKε from mitochondrial antiviral platform Ning, Yun-Jia; Wang, Manli; Deng, Maping; Shen, Shu; Liu, Wei; Cao, Wu-Chun; Deng, Fei; Wang, Yan-Yi; Hu, Zhihong; Wang, Hualin 2014 2014-08-01 PMC N PMC7107466 24706939.0 10.1093/jmcb/mju015 b68tn3vz 0.463788
6 Lai_C_2014 Nonstructural Protein 5A Is Incorporated into Hepatitis C Virus Low-Density Particle through Interaction with Core Protein and Microtubules during Intracellular Transport Lai, Chao-Kuen; Saxena, Vikas; Tseng, Chung-Hsin; Jeng, King-Song; Kohara, Michinori; Lai, Michael M. C. 2014 2014-06-06 COMM-USE N PMC4048239 24905011.0 10.1371/journal.pone.0099022 84zfabti 0.450152 Liu_H_2009, Narayanan_2003, Volmer_2010 Popescu_2011, Neufeldt_2016, Romero-Brey_2015
7 Hossain_2020 Impact of the Interaction of Hepatitis B Virus with Mitochondria and Associated Proteins Hossain, Md. Golzar; Akter, Sharmin; Ohsaki, Eriko; Ueda, Keiji 2020 2020-02-04 COMM-USE N PMC7077294 32033216.0 10.3390/v12020175 6qoewbf1 0.436602 Trobaugh_2017, Berkhout_2006, Klein_2011, Haasnoot_2010, Mao_J_2019
8 Knodel_2018 Quantitative Analysis of Hepatitis C NS5A Viral Protein Dynamics on the ER Surface Knodel, Markus M.; Nägel, Arne; Reiter, Sebastian; Vogel, Andreas; Targett-Adams, Paul; McLauchlan, John; Herrmann, Eva; Wittum, Gabriel 2018 2018-01-08 COMM-USE N PMC5795441 29316722.0 10.3390/v10010028 58xrrowk 0.423734 den_Boon_2010, Trobaugh_2017, Volmer_2010, Tessier_2019, Popescu_2011 Popescu_2011, Neufeldt_2016
9 Greseth_2014 De novo Fatty Acid Biosynthesis Contributes Significantly to Establishment of a Bioenergetically Favorable Environment for Vaccinia Virus Infection Greseth, Matthew D.; Traktman, Paula 2014 2014-03-20 COMM-USE N PMC3961357 24651651.0 10.1371/journal.ppat.1004021 j33faib3 0.422124 Volmer_2010, Trobaugh_2017, Berkhout_2006 Mingorance_2018
10 Aweya_2015 NS5B induces up-regulation of the BH3-only protein, BIK, essential for the hepatitis C virus RNA replication and viral release Aweya, Jude Juventus; Sze, Ching Wooen; Bayega, Anthony; Mohd-Ismail, Nur Khairiah; Deng, Lin; Hotta, Hak; Tan, Yee-Joo 2015 2015-01-01 None N PMC7127593 25463603.0 10.1016/j.virol.2014.10.027 kqt43xo0 0.411422 Yasuda-Inoue_2013, Liu_H_2009 Aweya_2013, Liu_H_2009, Neufeldt_2016
11 Bongaerts_2008 Microbial proteinase inside human cells as anti-mitochondrial activity: A new virulence factor in infectious diseases? Bongaerts, Ger P.A.; van den Heuvel, Lambert P. 2008 2008-12-31 PMC N PMC7131153 17825998.0 10.1016/j.mehy.2007.06.035 u04rej8s 0.406843 Tessier_2019, Moon_2012, Trobaugh_2017, Stoecklin_2012 Zhang_2015, Sun_D_2016, Galluzzi_2008
12 Mingorance_2018 Host phosphatidic acid phosphatase lipin1 is rate limiting for functional hepatitis C virus replicase complex formation Mingorance, Lidia; Castro, Victoria; Ávila-Pérez, Ginés; Calvo, Gema; Rodriguez, María Josefa; Carrascosa, José L.; Pérez-del-Pulgar, Sofía; Forns, Xavier; Gastaminza, Pablo 2018 2018-09-18 COMM-USE N PMC6161900 30226904.0 10.1371/journal.ppat.1007284 u46xryoo 0.406312 Trobaugh_2017, Berkhout_2006, Haasnoot_2010 Neufeldt_2016
13 Kim_J_2015 Common and distinctive localization patterns of Crumbs polarity complex proteins in the mammalian eye Kim, Jin Young; Song, Ji Yun; Karnam, Santi; Park, Jun Young; Lee, Jamie JH; Kim, Seonhee; Cho, Seo-Hee 2015 2015-01-01 PMC N PMC5033123 25636444.0 10.1016/j.gep.2015.01.002 pkr65zg3 0.393268 Volmer_2010, Dubois_2016, Emmott_2009 Zhang_2015
14 Popescu_2011 NS2 Protein of Hepatitis C Virus Interacts with Structural and Non-Structural Proteins towards Virus Assembly Popescu, Costin-Ioan; Callens, Nathalie; Trinel, Dave; Roingeard, Philippe; Moradpour, Darius; Descamps, Véronique; Duverlie, Gilles; Penin, François; Héliot, Laurent; Rouillé, Yves; Dubuisson, Jean 2011 2011-02-10 COMM-USE N PMC3037360 21347350.0 10.1371/journal.ppat.1001278 cz42gvhy 0.378813 Volmer_2010, Yasuda-Inoue_2013 Zhang_2015, Neufeldt_2016
15 Rodriguez_2018 C19ORF66 broadly escapes viral-induced endonuclease cleavage and restricts Kaposi’s Sarcoma Associated Herpesvirus (KSHV) William Rodriguez; Aman Srivastav; Mandy Muller 2018 2018-12-26 BioRxiv N 10.1101/506410 5a4i8v59 0.376657 Trobaugh_2017, Haasnoot_2010, Berkhout_2006, Herbert_2016
16 Fournier_2013 Are trans‐complementation systems suitable for hepatitis C virus life cycle studies? Fournier, C.; Duverlie, G.; Castelain, S. 2013 2013-02-14 PMC N PMC7167126 23490366.0 10.1111/jvh.12069 bvdsz626 0.367970 den_Boon_2010, Trobaugh_2017
17 Masaki_2015 miR-122 Stimulates Hepatitis C Virus RNA Synthesis by Altering the Balance of Viral RNAs Engaged in Replication versus Translation Masaki, Takahiro; Arend, Kyle C.; Li, You; Yamane, Daisuke; McGivern, David R.; Kato, Takanobu; Wakita, Takaji; Moorman, Nathaniel J.; Lemon, Stanley M. 2015 2015-02-11 None N PMC4326553 25662750.0 10.1016/j.chom.2014.12.014 pmdera3v 0.324132 Yasuda-Inoue_2013, Stork_2011, Liu_H_2009 Liu_H_2009
18 Königs_2020 SRSF7 maintains its homeostasis through the expression of Split-ORFs and nuclear body assembly Königs, Vanessa; de Oliveira Freitas Machado, Camila; Arnold, Benjamin; Blümel, Nicole; Solovyeva, Anfisa; Löbbert, Sinah; Schafranek, Michal; Ruiz De Los Mozos, Igor; Wittig, Ilka; McNicoll, Francois; Schulz, Marcel H.; Müller-McNicoll, Michaela 2020 2020-03-02 PMC N PMC7096898 32123389.0 10.1038/s41594-020-0385-9 0dab3c2u 0.322607 Ivanova_2015, Yasuda-Inoue_2013, Abernathy_2015 Sasvari_2011
19 Cho_W_2012 Genome-wide expression profiling shows transcriptional reprogramming in Fusarium graminearum by Fusarium graminearum virus 1-DK21 infection Cho, Won Kyong; Yu, Jisuk; Lee, Kyung-Mi; Son, Moonil; Min, Kyunghun; Lee, Yin-Won; Kim, Kook-Hyung 2012 2012-05-06 COMM-USE N PMC3478160 22559730.0 10.1186/1471-2164-13-173 kf9m4zho 0.318555 Berkhout_2006, Trobaugh_2017, Haasnoot_2010, Herbert_2016, Abernathy_2015
20 Baquero-Pérez_2015 Hsp70 Isoforms Are Essential for the Formation of Kaposi’s Sarcoma-Associated Herpesvirus Replication and Transcription Compartments Baquero-Pérez, Belinda; Whitehouse, Adrian 2015 2015-11-20 COMM-USE N PMC4654589 26587836.0 10.1371/journal.ppat.1005274 d62iuk72 0.315514 Yasuda-Inoue_2013, den_Boon_2010, Stork_2011 Xin_S_2019
21 Guo_F_2017 HBV core protein allosteric modulators differentially alter cccDNA biosynthesis from de novo infection and intracellular amplification pathways Guo, Fang; Zhao, Qiong; Sheraz, Muhammad; Cheng, Junjun; Qi, Yonghe; Su, Qing; Cuconati, Andrea; Wei, Lai; Du, Yanming; Li, Wenhui; Chang, Jinhong; Guo, Ju-Tao 2017 2017-09-25 COMM-USE N PMC5629035 28945802.0 10.1371/journal.ppat.1006658 m3y35ozx 0.311951 Stork_2011, den_Boon_2010 Neufeldt_2016, Chemudupati_2019
22 Khan_2015 Mitochondrial dynamics and viral infections: A close nexus Khan, Mohsin; Syed, Gulam Hussain; Kim, Seong-Jun; Siddiqui, Aleem 2015 2015-10-31 PMC N PMC4500740 25595529.0 10.1016/j.bbamcr.2014.12.040 ao80xk11 0.303364 Kim_S_2018, Shi_J_2012, Mao_J_2019 Lin_L_2010, Galluzzi_2008, Kim_S_2018
23 Fernández-Ponce_2018 Ultrastructural Localization and Molecular Associations of HCV Capsid Protein in Jurkat T Cells Fernández-Ponce, Cecilia; Durán-Ruiz, Maria C.; Narbona-Sánchez, Isaac; Muñoz-Miranda, Juan P.; Arbulo-Echevarria, Mikel M.; Serna-Sanz, Antonio; Baumann, Christian; Litrán, Rocío; Aguado, Enrique; Bloch, Wilhelm; García-Cozar, Francisco 2018 2018-01-04 COMM-USE N PMC5758585 29354102.0 10.3389/fmicb.2017.02595 purplsjn 0.301914 Volmer_2010, Trobaugh_2017, Liu_H_2009 Zhang_2015, Popescu_2011