Topic 03 -- Abstracts with Biological Entities (English) - 75 Topics / Sub-Topic Model 12 - 15 Topics

cite ad title authors publish year publish time dataset abstract mentions covid pmcid pubmed id doi cord uid topic weight Similarity scispacy Similarity specter
1 Limpens_2011 The Transformation of Enterovirus Replication Structures: a Three-Dimensional Study of Single- and Double-Membrane Compartments Limpens, Ronald W. A. L.; van der Schaar, Hilde M.; Kumar, Darshan; Koster, Abraham J.; Snijder, Eric J.; van Kuppeveld, Frank J. M.; Bárcena, Montserrat 2011 2011-10-04 NONCOMM N PMC3187575 21972238.0 10.1128/mbio.00166-11 o32e9o0l 0.892548 Volmer_2010, den_Boon_2010 Sun_D_2016, Melia_2018
2 Melia_2018 The Origin, Dynamic Morphology, and PI4P-Independent Formation of Encephalomyocarditis Virus Replication Organelles Melia, C. E.; van der Schaar, H. M.; de Jong, A. W. M.; Lyoo, H. R.; Snijder, E. J.; Koster, A. J.; van Kuppeveld, F. J. M.; Bárcena, M. 2018 2018-04-17 COMM-USE N PMC5904412 29666283.0 10.1128/mbio.00420-18 zp5tz9pc 0.833957 den_Boon_2010, Volmer_2010, V’kovski_2015 Sun_D_2016, Zhang_2015
3 Melia_2019 Origins of Enterovirus Replication Organelles Established by Whole-Cell Electron Microscopy Melia, Charlotte E.; Peddie, Christopher J.; de Jong, Anja W. M.; Snijder, Eric J.; Collinson, Lucy M.; Koster, Abraham J.; van der Schaar, Hilde M.; van Kuppeveld, Frank J. M.; Bárcena, Montserrat 2019 2019-06-11 COMM-USE N PMC6561026 31186324.0 10.1128/mbio.00951-19 kymz4xru 0.820403 Volmer_2010, den_Boon_2010 Wulan_2015, Tenorio_2018
4 Tenorio_2018 Reovirus σNS and μNS Proteins Remodel the Endoplasmic Reticulum to Build Replication Neo-Organelles Tenorio, Raquel; Fernández de Castro, Isabel; Knowlton, Jonathan J.; Zamora, Paula F.; Lee, Christopher H.; Mainou, Bernardo A.; Dermody, Terence S.; Risco, Cristina 2018 2018-08-07 COMM-USE N PMC6083906 30087167.0 10.1128/mbio.01253-18 qwr03j43 0.809901 Hurley_2014 Doyle_2018, Neufeldt_2016
5 Romero-Brey_2012 Three-Dimensional Architecture and Biogenesis of Membrane Structures Associated with Hepatitis C Virus Replication Romero-Brey, Inés; Merz, Andreas; Chiramel, Abhilash; Lee, Ji-Young; Chlanda, Petr; Haselman, Uta; Santarella-Mellwig, Rachel; Habermann, Anja; Hoppe, Simone; Kallis, Stephanie; Walther, Paul; Antony, Claude; Krijnse-Locker, Jacomine; Bartenschlager, Ralf 2012 2012-12-06 COMM-USE N PMC3516559 23236278.0 10.1371/journal.ppat.1003056 nly4gqxq 0.794459 Volmer_2010, den_Boon_2010, Quiner_2010 Neufeldt_2016, Ferraris_2012
6 Ávila‐Pérez_2016 Ultrastructural characterization of membranous torovirus replication factories Ávila‐Pérez, Ginés; Rejas, María Teresa; Rodríguez, Dolores 2016 2016-07-05 PMC N PMC7162420 27218226.0 10.1111/cmi.12620 5psqxxc8 0.782039 den_Boon_2010, Volmer_2010, Payne_2017
7 Krieger_2014 Reorganization of the Endosomal System in Salmonella-Infected Cells: The Ultrastructure of Salmonella-Induced Tubular Compartments Krieger, Viktoria; Liebl, David; Zhang, Yuying; Rajashekar, Roopa; Chlanda, Petr; Giesker, Katrin; Chikkaballi, Deepak; Hensel, Michael 2014 2014-09-25 COMM-USE N PMC4177991 25254663.0 10.1371/journal.ppat.1004374 tk4dmey5 0.781746 Hurley_2014
8 Maier_2013 Infectious Bronchitis Virus Generates Spherules from Zippered Endoplasmic Reticulum Membranes Maier, Helena J.; Hawes, Philippa C.; Cottam, Eleanor M.; Mantell, Judith; Verkade, Paul; Monaghan, Paul; Wileman, Tom; Britton, Paul 2013 2013-10-22 COMM-USE N PMC3812713 24149513.0 10.1128/mbio.00801-13 9500ducy 0.772876 den_Boon_2010, Volmer_2010, Welsch_2009, Quiner_2010 Doyle_2018
9 Berryman_2016 Foot-and-mouth disease virus replicates independently of phosphatidylinositol 4-phosphate and type III phosphatidylinositol 4-kinases Berryman, Stephen; Moffat, Katy; Harak, Christian; Lohmann, Volker; Jackson, Terry 2016 2016-08-23 COMM-USE N PMC5156328 27093462.0 10.1099/jgv.0.000485 bmutxybx 0.766363 den_Boon_2010, Volmer_2010 Sasaki_2011
10 Knoops_2008 SARS-Coronavirus Replication Is Supported by a Reticulovesicular Network of Modified Endoplasmic Reticulum Knoops, Kèvin; Kikkert, Marjolein; van den Worm, Sjoerd H. E.; Zevenhoven-Dobbe, Jessika C; van der Meer, Yvonne; Koster, Abraham J; Mommaas, A. Mieke; Snijder, Eric J 2008 2008-09-16 COMM-USE N PMC2535663 18798692.0 10.1371/journal.pbio.0060226 210dwhgj 0.726916 den_Boon_2010, Welsch_2009, Lenard_2008 Neufeldt_2016, Hagemeijer_2014, Wulan_2015
11 van_der_Hoeven_2016 Biogenesis and architecture of arterivirus replication organelles van der Hoeven, Barbara; Oudshoorn, Diede; Koster, Abraham J.; Snijder, Eric J.; Kikkert, Marjolein; Bárcena, Montserrat 2016 2016-07-15 PMC N PMC7111217 27071852.0 10.1016/j.virusres.2016.04.001 3fyyabm0 0.725460 den_Boon_2010, Volmer_2010 Wulan_2015, Melia_2018
12 Reggiori_2010 Coronaviruses Hijack the LC3-I-Positive EDEMosomes, ER-Derived Vesicles Exporting Short-Lived ERAD Regulators, for Replication Reggiori, Fulvio; Monastyrska, Iryna; Verheije, Monique H.; Calì, Tito; Ulasli, Mustafa; Bianchi, Siro; Bernasconi, Riccardo; de Haan, Cornelis A.M.; Molinari, Maurizio 2010 2010-06-17 None N PMC7103375 20542253.0 10.1016/j.chom.2010.05.013 t65hu6i8 0.723608 Hurley_2014, Yasuda-Inoue_2013 Noack_2014, Neufeldt_2016
13 Arakawa_2019 Flavivirus Replication Organelle Biogenesis in the Endoplasmic Reticulum: Comparison with Other Single-Stranded Positive-Sense RNA Viruses Arakawa, Masashi; Morita, Eiji 2019 2019-05-11 COMM-USE N PMC6539296 31083507.0 10.3390/ijms20092336 hina8545 0.709264 den_Boon_2010, Hagemeijer_2012, Volmer_2010 Wulan_2015, Diaz_2012, Neufeldt_2016
14 van_der_Schaar_2016 Illuminating the Sites of Enterovirus Replication in Living Cells by Using a Split-GFP-Tagged Viral Protein van der Schaar, H. M.; Melia, C. E.; van Bruggen, J. A. C.; Strating, J. R. P. M.; van Geenen, M. E. D.; Koster, A. J.; Bárcena, M.; van Kuppeveld, F. J. M. 2016 2016-07-06 COMM-USE N PMC4935779 27390781.0 10.1128/msphere.00104-16 1aptufp6 0.702500 Volmer_2010, den_Boon_2010, Stork_2011 Wulan_2015
15 Hagemeijer_2012 Biogenesis and Dynamics of the Coronavirus Replicative Structures Hagemeijer, Marne C.; Rottier, Peter J.M.; de Haan, Cornelis A.M. 2012 2012-11-21 COMM-USE N PMC3509692 23202524.0 10.3390/v4113245 v5kpmk0b 0.696784 den_Boon_2010, Stork_2011, Yasuda-Inoue_2013 Wulan_2015, Diaz_2012
16 Fontana_2010 Three-dimensional structure of Rubella virus factories Fontana, Juan; López-Iglesias, Carmen; Tzeng, Wen-Ping; Frey, Teryl K.; Fernández, José J.; Risco, Cristina 2010 2010-09-30 PMC N PMC7111912 20655079.0 10.1016/j.virol.2010.06.043 w2hic0e2 0.695089 Zhang_2015, Tenorio_2018
17 Noack_2014 Chapter 8 Non-Lipidated LC3 is Essential for Mouse Hepatitis Virus Infection Noack, Julia; Bernasconi, Riccardo; Molinari, Maurizio 2014 2014-12-31 PMC N PMC7150285 10.1016/b978-0-12-405877-4.00008-1 mhkxw1uh 0.679825 Volmer_2010 Doyle_2018, Neufeldt_2016
18 Hagemeijer_2014 Studying the Dynamics of Coronavirus Replicative Structures Hagemeijer, Marne C.; de Haan, Cornelis A. M. 2014 2014-12-18 PMC N PMC7122990 25720487.0 10.1007/978-1-4939-2438-7_22 uozkwxs5 0.676607 den_Boon_2010, Volmer_2010, Stork_2011 Wulan_2015, Zhang_2015
19 Welsch_2009 Composition and Three-Dimensional Architecture of the Dengue Virus Replication and Assembly Sites Welsch, Sonja; Miller, Sven; Romero-Brey, Ines; Merz, Andreas; Bleck, Christopher K.E.; Walther, Paul; Fuller, Stephen D.; Antony, Claude; Krijnse-Locker, Jacomine; Bartenschlager, Ralf 2009 2009-04-23 None N PMC7103389 19380115.0 10.1016/j.chom.2009.03.007 vil2y9oo 0.669864 den_Boon_2010 Neufeldt_2016
20 Quiner_2010 Fragmentation of the Golgi apparatus provides replication membranes for human rhinovirus 1A Quiner, Claire A.; Jackson, William T. 2010 2010-11-25 None N PMC7111317 20825962.0 10.1016/j.virol.2010.08.012 pe5g7wwy 0.650068 Volmer_2010, den_Boon_2010, Terrier_2016 Neufeldt_2016
21 Sachse_2019 Chapter One The viral replication organelles within cells studied by electron microscopy Sachse, Martin; Fernández de Castro, Isabel; Tenorio, Raquel; Risco, Cristina 2019 2019-12-31 PMC N PMC7112055 31522702.0 10.1016/bs.aivir.2019.07.005 a64pbftg 0.631376 den_Boon_2010, Denison_2008, Marsh_2006 Risco_2013, Rossignol_2015, Tenorio_2018
22 Maier_2016 Extensive coronavirus-induced membrane rearrangements are not a determinant of pathogenicity Maier, Helena J.; Neuman, Benjamin W.; Bickerton, Erica; Keep, Sarah M.; Alrashedi, Hasan; Hall, Ross; Britton, Paul 2016 2016-06-03 COMM-USE N PMC4891661 27255716.0 10.1038/srep27126 e1zhpksc 0.628404 den_Boon_2010, Volmer_2010, Stork_2011 Doyle_2018, Neufeldt_2016
23 Doyle_2019 The Porcine Deltacoronavirus Replication Organelle Comprises Double-Membrane Vesicles and Zippered Endoplasmic Reticulum with Double-Membrane Spherules Doyle, Nicole; Hawes, Philippa C.; Simpson, Jennifer; Adams, Lorin H.; Maier, Helena J. 2019 2019-11-05 COMM-USE N PMC6893519 31694296.0 10.3390/v11111030 i6t8jgdm 0.626889 den_Boon_2010, Volmer_2010, Terrier_2016, Quiner_2010 Doyle_2018
24 Angelini_2014 Untangling Membrane Rearrangement in the Nidovirales Angelini, Megan Mary; Neuman, Benjamin William; Buchmeier, Michael J. 2014 2014-03-01 PMC N PMC3942677 24410069.0 10.1089/dna.2013.2304 rm89rria 0.626475 den_Boon_2010, Trobaugh_2017, Denison_2008 Diaz_2012, Sun_D_2016
25 Mackenzie_2005 Wrapping Things up about Virus RNA Replication Mackenzie, Jason 2005 2005-09-05 PMC N PMC7169867 16190978.0 10.1111/j.1600-0854.2005.00339.x 6ql7znwx 0.625992 den_Boon_2010, Volmer_2010, Trobaugh_2017
26 Kopek_2007 Three-Dimensional Analysis of a Viral RNA Replication Complex Reveals a Virus-Induced Mini-Organelle Kopek, Benjamin G; Perkins, Guy; Miller, David J; Ellisman, Mark H; Ahlquist, Paul 2007 2007-08-14 COMM-USE N PMC1945040 17696647.0 10.1371/journal.pbio.0050220 ap5n6ijl 0.614197 den_Boon_2010, Stork_2011, Payne_2017 Wulan_2015
27 Doyle_2018 Infectious Bronchitis Virus Nonstructural Protein 4 Alone Induces Membrane Pairing Doyle, Nicole; Neuman, Benjamin W.; Simpson, Jennifer; Hawes, Philippa C.; Mantell, Judith; Verkade, Paul; Alrashedi, Hasan; Maier, Helena J. 2018 2018-09-06 COMM-USE N PMC6163833 30200673.0 10.3390/v10090477 3uidpr79 0.608029 Volmer_2010, den_Boon_2010, Yasuda-Inoue_2013 Zhang_2015
28 Ulasli_2010 Qualitative and quantitative ultrastructural analysis of the membrane rearrangements induced by coronavirus Ulasli, Mustafa; Verheije, Monique H.; de Haan, Cornelis A. M.; Reggiori, Fulvio 2010 2010-01-20 PMC N PMC7159092 20088951.0 10.1111/j.1462-5822.2010.01437.x z7bdiuvx 0.605867 Volmer_2010, den_Boon_2010, Terrier_2016, Quiner_2010
29 Blanchard_2014 Virus‐induced double‐membrane vesicles Blanchard, Emmanuelle; Roingeard, Philippe 2014 2014-10-31 PMC N PMC7162400 10.1111/cmi.12372 mdrghjlt 0.599288 Hurley_2014, den_Boon_2010
30 Wang_2017 Enterovirus 71 protease 2A(pro) and 3C(pro) differentially inhibit the cellular endoplasmic reticulum-associated degradation (ERAD) pathway via distinct mechanisms, and enterovirus 71 hijacks ERAD component p97 to promote its replication Wang, Tao; Wang, Bei; Huang, He; Zhang, Chongyang; Zhu, Yuanmei; Pei, Bin; Cheng, Chaofei; Sun, Lei; Wang, Jianwei; Jin, Qi; Zhao, Zhendong 2017 2017-10-06 COMM-USE N PMC5650186 28985237.0 10.1371/journal.ppat.1006674 whbkh30a 0.595846 Hurley_2014 Yan_J_2020
31 Maier_2012 Involvement of Autophagy in Coronavirus Replication Maier, Helena J.; Britton, Paul 2012 2012-11-30 COMM-USE N PMC3528273 23202545.0 10.3390/v4123440 yr678u8c 0.589424 den_Boon_2010, Volmer_2010 Ding_2017, Ávila-Pérez_2019
32 Snijder_2020 A unifying structural and functional model of the coronavirus replication organelle: tracking down RNA synthesis Eric J. Snijder; Ronald W.A.L. Limpens; Adriaan H. de Wilde; Anja W. M. de Jong; Jessika C. Zevenhoven-Dobbe; Helena J. Maier; F.G.A. Faas; Abraham J. Koster; Montserrat Bárcena 2020 2020-03-24 BioRxiv Y 10.1101/2020.03.24.005298 mmkrwj8t 0.583905 den_Boon_2010, Volmer_2010, Terrier_2016, Stork_2011 Neufeldt_2016, Hagemeijer_2014
33 Gushchin_2013 Beet yellows virus replicase and replicative compartments: parallels with other RNA viruses Gushchin, Vladimir A.; Solovyev, Andrey G.; Erokhina, Tatyana N.; Morozov, Sergey Y.; Agranovsky, Alexey A. 2013 2013-03-06 COMM-USE N PMC3589766 23508802.0 10.3389/fmicb.2013.00038 kz7ets8c 0.582100 den_Boon_2010, Yasuda-Inoue_2013, Volmer_2010, Stork_2011 Wulan_2015
34 Zhou_2017 Ultrastructural Characterization of Membrane Rearrangements Induced by Porcine Epidemic Diarrhea Virus Infection Zhou, Xingdong; Cong, Yingying; Veenendaal, Tineke; Klumperman, Judith; Shi, Dongfang; Mari, Muriel; Reggiori, Fulvio 2017 2017-09-05 COMM-USE N PMC5618017 28872588.0 10.3390/v9090251 g1oqvc5i 0.581236 Volmer_2010, den_Boon_2010, Terrier_2016, Stertz_2007 Doyle_2018
35 Romero-Brey_2014 Membranous Replication Factories Induced by Plus-Strand RNA Viruses Romero-Brey, Inés; Bartenschlager, Ralf 2014 2014-07-22 COMM-USE N PMC4113795 25054883.0 10.3390/v6072826 aesiff1f 0.576630 Volmer_2010, Tessier_2019, Dubois_2016 Diaz_2012, Harak_2015
36 Romero-Brey_2016 Endoplasmic Reticulum: The Favorite Intracellular Niche for Viral Replication and Assembly Romero-Brey, Inés; Bartenschlager, Ralf 2016 2016-06-07 COMM-USE N PMC4926180 27338443.0 10.3390/v8060160 dfdypeqr 0.575680 den_Boon_2010, Volmer_2010 Tenorio_2018, Diaz_2012, Neufeldt_2016, Wulan_2015
37 den_Boon_2010 Cytoplasmic Viral Replication Complexes den Boon, Johan A.; Diaz, Arturo; Ahlquist, Paul 2010 2010-07-22 None N PMC2921950 20638644.0 10.1016/j.chom.2010.06.010 2yl5qwsn 0.569928 Stork_2011, Yasuda-Inoue_2013, Li_Z_2010 Diaz_2012, Wulan_2015, Harak_2015
38 Sasvari_2010 Making of Viral Replication Organelles by Remodeling Interior Membranes Sasvari, Zsuzsanna; Nagy, Peter D. 2010 2010-11-05 COMM-USE N PMC3185585 21994625.0 10.3390/v2112436 477utyfm 0.569758 den_Boon_2010, Trobaugh_2017, Stork_2011 Diaz_2012, Harak_2015, Wulan_2015
39 Romero-Brey_2015 NS5A Domain 1 and Polyprotein Cleavage Kinetics Are Critical for Induction of Double-Membrane Vesicles Associated with Hepatitis C Virus Replication Romero-Brey, Inés; Berger, Carola; Kallis, Stephanie; Kolovou, Androniki; Paul, David; Lohmann, Volker; Bartenschlager, Ralf 2015 2015-07-07 NONCOMM N PMC4488949 26152585.0 10.1128/mbio.00759-15 h9bx7yvt 0.569053 Volmer_2010, Stork_2011, Yasuda-Inoue_2013 Neufeldt_2016
40 Dorobantu_2015 Modulation of the Host Lipid Landscape to Promote RNA Virus Replication: The Picornavirus Encephalomyocarditis Virus Converges on the Pathway Used by Hepatitis C Virus Dorobantu, Cristina M.; Albulescu, Lucian; Harak, Christian; Feng, Qian; van Kampen, Mirjam; Strating, Jeroen R. P. M.; Gorbalenya, Alexander E.; Lohmann, Volker; van der Schaar, Hilde M.; van Kuppeveld, Frank J. M. 2015 2015-09-25 COMM-USE N PMC4583462 26406250.0 10.1371/journal.ppat.1005185 andje0wu 0.558962 Yasuda-Inoue_2013, den_Boon_2010 Neufeldt_2016, Sun_D_2016
41 Harak_2015 Ultrastructure of the replication sites of positive-strand RNA viruses Harak, Christian; Lohmann, Volker 2015 2015-05-31 PMC N PMC7111692 25746936.0 10.1016/j.virol.2015.02.029 zgyfwowq 0.558795 den_Boon_2010, Trobaugh_2017, Denison_2008, Kindler_2014 Diaz_2012, Wulan_2015
42 van_der_Schaar_2016 Fat(al) attraction: Picornaviruses Usurp Lipid Transfer at Membrane Contact Sites to Create Replication Organelles van der Schaar, Hilde M.; Dorobantu, Cristina M.; Albulescu, Lucian; Strating, Jeroen R.P.M.; van Kuppeveld, Frank J.M. 2016 2016-07-31 PMC N PMC7126954 27020598.0 10.1016/j.tim.2016.02.017 ylnb6qfl 0.556593 den_Boon_2010, Trobaugh_2017, Payne_2017 Neufeldt_2016, Sun_D_2016, Zhang_2015
43 Ferraris_2012 Sequential biogenesis of host cell membrane rearrangements induced by hepatitis C virus infection Ferraris, Pauline; Beaumont, Elodie; Uzbekov, Rustem; Brand, Denys; Gaillard, Julien; Blanchard, Emmanuelle; Roingeard, Philippe 2012 2012-11-25 PMC N PMC4901162 23184194.0 10.1007/s00018-012-1213-0 wsxlw6u4 0.553690 den_Boon_2010, Volmer_2010, Quiner_2010, Welsch_2009, Narayanan_2003 Neufeldt_2016, Doyle_2018, Wulan_2015
44 V’kovski_2015 New insights on the role of paired membrane structures in coronavirus replication V’kovski, Philip; Al-Mulla, Hawaa; Thiel, Volker; Neuman, Benjamin W. 2015 2015-04-16 PMC N PMC7114427 25550072.0 10.1016/j.virusres.2014.12.021 psjua913 0.548775 den_Boon_2010, Taschuk_2020, Klein_2011, Yasuda-Inoue_2013 Diaz_2012, Hagemeijer_2014, Neufeldt_2016
45 Netherton_2011 Virus factories, double membrane vesicles and viroplasm generated in animal cells Netherton, Christopher L; Wileman, Tom 2011 2011-11-30 PMC N PMC7102809 22440839.0 10.1016/j.coviro.2011.09.008 9mertwj7 0.548310 den_Boon_2010, Li_Z_2011 Diaz_2012, Wulan_2015, Harak_2015
46 Grangeon_2012 Host endomembrane recruitment for plant RNA virus replication Grangeon, Romain; Jiang, Jun; Laliberté, Jean-François 2012 2012-12-31 PMC N 23123078.0 10.1016/j.coviro.2012.10.003 l65ygqyu 0.541422 den_Boon_2010 Fulcher_2011, Wulan_2015, Neufeldt_2016
47 Neuman_2016 Bioinformatics and functional analyses of coronavirus nonstructural proteins involved in the formation of replicative organelles Neuman, Benjamin W. 2016 2016-11-30 PMC N PMC7113682 27743916.0 10.1016/j.antiviral.2016.10.005 pg8u1hc2 0.538608 den_Boon_2010, Volmer_2010, Taschuk_2020, Yasuda-Inoue_2013 Zhang_2015
48 Almsherqi_2010 Chapter Four The Cubic “Faces” of Biomembranes Almsherqi, Zakaria A.; Margadant, Felix; Deng, Yuru 2010 2010-12-31 PMC N PMC7149561 10.1016/b978-0-12-381266-7.00004-3 l3qursyw 0.517161 Hurley_2014
49 Belov_2012 (+)RNA viruses rewire cellular pathways to build replication organelles Belov, George A; van Kuppeveld, Frank JM 2012 2012-12-31 PMC N PMC7102821 23036609.0 10.1016/j.coviro.2012.09.006 g1muealp 0.515156 den_Boon_2010, Trobaugh_2017, Taschuk_2020, Berkhout_2006 Diaz_2012, Harak_2015
50 Miller_2008 Modification of intracellular membrane structures for virus replication Miller, Sven; Krijnse-Locker, Jacomine 2008 2008-01-01 PMC N PMC7096853 18414501.0 10.1038/nrmicro1890 686fxpum 0.512738 den_Boon_2010, Denison_2008 Villanueva_2005, Netherton_2007, Wulan_2015, Giorda_2013
51 Oudshoorn_2016 Antiviral Innate Immune Response Interferes with the Formation of Replication-Associated Membrane Structures Induced by a Positive-Strand RNA Virus Oudshoorn, Diede; van der Hoeven, Barbara; Limpens, Ronald W. A. L.; Beugeling, Corrine; Snijder, Eric J.; Bárcena, Montserrat; Kikkert, Marjolein 2016 2016-12-06 COMM-USE N PMC5142621 27923923.0 10.1128/mbio.01991-16 h5xupuvu 0.510789 den_Boon_2010, Klein_2011, Trobaugh_2017, Berkhout_2006, Volmer_2010 Neufeldt_2016
52 Angelini_2013 Severe Acute Respiratory Syndrome Coronavirus Nonstructural Proteins 3, 4, and 6 Induce Double-Membrane Vesicles Angelini, Megan M.; Akhlaghpour, Marzieh; Neuman, Benjamin W.; Buchmeier, Michael J. 2013 2013-08-13 NONCOMM N PMC3747587 23943763.0 10.1128/mbio.00524-13 yl1qyh7j 0.506299 Volmer_2010, den_Boon_2010 Doyle_2018, Neufeldt_2016
53 Venkatagopalan_2015 Coronavirus envelope (E) protein remains at the site of assembly Venkatagopalan, Pavithra; Daskalova, Sasha M.; Lopez, Lisa A.; Dolezal, Kelly A.; Hogue, Brenda G. 2015 2015-04-30 PMC N PMC4550588 25726972.0 10.1016/j.virol.2015.02.005 rl483cg9 0.497813 Volmer_2010
54 Strating_2013 Cholesterol: fa(s)t-food for enterovirus genome replication Strating, Jeroen R.P.; van der Schaar, Hilde M.; van Kuppeveld, Frank J.M. 2013 2013-11-30 PMC N PMC7125759 24103385.0 10.1016/j.tim.2013.09.007 8gd73q0h 0.494466 den_Boon_2010, Mao_J_2019 Sun_D_2016
55 Pierini_2009 Modulation of membrane traffic between endoplasmic reticulum, ERGIC and Golgi to generate compartments for the replication of bacteria and viruses Pierini, Roberto; Cottam, Eleanor; Roberts, Rebecca; Wileman, Thomas 2009 2009-09-30 PMC N PMC7110581 19508853.0 10.1016/j.semcdb.2009.03.015 qy8vj6uu 0.483437 Hurley_2014, den_Boon_2010 Grangeon_2012, Neufeldt_2016, Tenorio_2018
56 Wileman_2016 Virus Factories and Mini-Organelles Generated for Virus Replication Wileman, T.; Netherton, C.L.; Powell, P.P. 2016 2016-12-31 PMC N PMC7149604 10.1016/b978-0-12-394447-4.20102-8 o5l5i0n1 0.473040 den_Boon_2010, Netherton_2011 Netherton_2011, Sasvari_2010, Diaz_2012, Harak_2015
57 Rossignol_2015 The Role of Electron Microscopy in Studying the Continuum of Changes in Membranous Structures during Poliovirus Infection Rossignol, Evan D.; Yang, Jie E.; Bullitt, Esther 2015 2015-10-12 COMM-USE N PMC4632382 26473912.0 10.3390/v7102874 az2hdsob 0.472998 den_Boon_2010, Trobaugh_2017, Volmer_2010 Zhang_2015, Wulan_2015
58 Stertz_2007 The intracellular sites of early replication and budding of SARS-coronavirus Stertz, Silke; Reichelt, Mike; Spiegel, Martin; Kuri, Thomas; Martínez-Sobrido, Luis; García-Sastre, Adolfo; Weber, Friedemann; Kochs, Georg 2007 2007-05-10 None N PMC7103305 17210170.0 10.1016/j.virol.2006.11.027 uw2a8uwj 0.466824 Volmer_2010, Quiner_2010, den_Boon_2010
59 Schaad_1997 Formation of plant RNA virus replication complexes on membranes: role of an endoplasmic reticulum-targeted viral protein. Schaad, M C; Jensen, P E; Carrington, J C 1997 1997-07-01 PMC N PMC1170028 9233814.0 10.1093/emboj/16.13.4049 sfezm3ga 0.464940 Stork_2011, den_Boon_2010, Narayanan_2003, Volmer_2010 Neufeldt_2016, Diaz_2012
60 Clementz_2008 Mutation in murine coronavirus replication protein nsp4 alters assembly of double membrane vesicles Clementz, Mark A.; Kanjanahaluethai, Amornrat; O'Brien, Timothy E.; Baker, Susan C. 2008 2008-05-25 PMC N PMC2443636 18295294.0 10.1016/j.virol.2008.01.018 jwflooop 0.464940 Stork_2011, Volmer_2010 Papa_2019
61 Yoshida_2015 IFN-β-inducing, unusual viral RNA species produced by paramyxovirus infection accumulated into distinct cytoplasmic structures in an RNA-type-dependent manner Yoshida, Asuka; Kawabata, Ryoko; Honda, Tomoyuki; Tomonaga, Keizo; Sakaguchi, Takemasa; Irie, Takashi 2015 2015-08-04 COMM-USE N PMC4523817 26300870.0 10.3389/fmicb.2015.00804 cxi3cr15 0.464567 Volmer_2010, den_Boon_2010, Trobaugh_2017
62 Bost_2001 Mouse Hepatitis Virus Replicase Protein Complexes Are Translocated to Sites of M Protein Accumulation in the ERGIC at Late Times of Infection Bost, Anne G.; Prentice, Erik; Denison, Mark R. 2001 2001-06-20 PMC N PMC7130751 11414802.0 10.1006/viro.2001.0932 92jm8e93 0.459881 Volmer_2010, Quiner_2010, Stertz_2007, Narayanan_2003, den_Boon_2010 Neufeldt_2016
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