Topic 13 -- Abstracts with Biological Entities (English) - 75 Topics / Sub-Topic Model 12 - 15 Topics

cite ad title authors publish year publish time dataset abstract mentions covid pmcid pubmed id doi cord uid topic weight Similarity scispacy Similarity specter
1 Bohnert_2013 SIN-dependent phosphoinhibition of formin multimerization controls fission yeast cytokinesis Bohnert, K. Adam; Grzegorzewska, Agnieszka P.; Willet, Alaina H.; Vander Kooi, Craig W.; Kovar, David R.; Gould, Kathleen L. 2013 2013-10-01 None N PMC3850099 24115772.0 10.1101/gad.224154.113 fgy1xdip 0.722135 Hurley_2014 Saul_2019
2 Papa_2019 Recombinant rotaviruses rescued by reverse genetics reveal the role of NSP5 hyperphosphorylation in the assembly of viral factories Guido Papa; Luca Venditti; Francesca Arnoldi; Elisabeth M. Schraner; Christiaan Potgieter; Alexander Borodavka; Catherine Eichwald; Oscar R. Burrone 2019 2019-06-04 BioRxiv N 10.1101/660217 1xdrd4dd 0.648219 Volmer_2010, den_Boon_2010, Stork_2011 Papa_2019, Brockway_2005
3 Papa_2019 Recombinant Rotaviruses Rescued by Reverse Genetics Reveal the Role of NSP5 Hyperphosphorylation in the Assembly of Viral Factories Papa, Guido; Venditti, Luca; Arnoldi, Francesca; Schraner, Elisabeth M.; Potgieter, Christiaan; Borodavka, Alexander; Eichwald, Catherine; Burrone, Oscar R. 2019 2019-12-12 COMM-USE N PMC6912106 31619556.0 10.1128/jvi.01110-19 zaeg1ujv 0.632101 Volmer_2010, den_Boon_2010, Stork_2011 Papa_2019, Brockway_2005
4 Turcu_2009 Regulation and Cellular Roles of Ubiquitin-specific Deubiquitinating Enzymes Turcu, Francisca E. Reyes; Ventii, Karen H.; Wilkinson, Keith D. 2009 2009-06-01 PMC N PMC2734102 19489724.0 10.1146/annurev.biochem.78.082307.091526 l9urey1l 0.601914 Wimmer_2015
5 Lindner_2007 Deubiquitination in virus infection Lindner, Holger A. 2007 2007-06-05 PMC N PMC7103280 17291557.0 10.1016/j.virol.2006.12.035 ogs4mq0v 0.587866 Taschuk_2020, El_Motiam_2019 Bailey-Elkin_2017, Watanabe_2019, Fung_2018, Wimmer_2015
6 Saura_1999 An Antiviral Mechanism of Nitric Oxide Inhibition of a Viral Protease Saura, Marta; Zaragoza, Carlos; McMillan, Audrey; Quick, Richard A; Hohenadl, Christine; Lowenstein, John M; Lowenstein, Charles J 1999 1999-01-01 PMC N PMC7129050 10023767.0 10.1016/s1074-7613(00)80003-5 le034mvq 0.564751 Viswanathan_2010, Tang_2018
7 Woo_B_2019 Regulatory interplay between deubiquitinating enzymes and cytokines Woo, Bean; Baek, Kwang-Hyun 2019 2019-08-31 PMC N PMC7108389 31208841.0 10.1016/j.cytogfr.2019.06.001 lvm11o4r 0.562732 Viswanathan_2010, Bailey-Elkin_2017, Taschuk_2020 Bailey-Elkin_2017
8 Saul_2019 ULK1/2 Restricts the Formation of Inducible SINT-Speckles, Membraneless Organelles Controlling the Threshold of TBK1 Activation Saul, Vera Vivian; Seibert, Markus; Krüger, Marcus; Jeratsch, Sylvia; Kracht, Michael; Schmitz, Michael Lienhard 2019 2019-08-06 None N PMC6710720 31442668.0 10.1016/j.isci.2019.08.001 5xk3z4ck 0.526168 Fitzgerald_2013
9 Barry_2010 Poxvirus Exploitation of the Ubiquitin-Proteasome System Barry, Michele; van Buuren, Nicholas; Burles, Kristin; Mottet, Kelly; Wang, Qian; Teale, Alastair 2010 2010-10-19 COMM-USE N PMC3185573 21994622.0 10.3390/v2102356 zpyz1krq 0.512581 Taschuk_2020, Bailey-Elkin_2017, Klein_2011 Si_X_2008, Bailey-Elkin_2017
10 Zhang_2011 Tripeptidyl peptidase II serves as an alternative to impaired proteasome to maintain viral growth in the host cells Zhang, Jingchun; Wong, Jerry; Gao, Guang; Luo, Honglin 2011 2011-01-03 PMC N 10.1016/j.febslet.2010.11.056 tbpngba8 0.473132 Klein_2011
11 Ladygina_2011 Dynamic Palmitoylation and the Role of DHHC Proteins in T Cell Activation and Anergy Ladygina, Nadejda; Martin, Brent R.; Altman, Amnon 2011 2011-01-01 PMC N PMC5464999 21569911.0 10.1016/b978-0-12-387664-5.00001-7 9vkydl83 0.468165 Zhang_2015
12 Tang_2018 Pleiotropic roles of the ubiquitin-proteasome system during viral propagation Tang, Qi; Wu, Peng; Chen, Huiqing; Li, Guohui 2018 2018-08-15 PMC N PMC7094228 29913185.0 10.1016/j.lfs.2018.06.014 ttc9oxgs 0.464656 Viswanathan_2010, Bailey-Elkin_2017 van_Tol_2017, Bailey-Elkin_2017, Luo_H_2010, Wimmer_2015
13 Checconi_2019 Role of Glutathionylation in Infection and Inflammation Checconi, Paola; Limongi, Dolores; Baldelli, Sara; Ciriolo, Maria Rosa; Nencioni, Lucia; Palamara, Anna Teresa 2019 2019-08-20 COMM-USE N PMC6723385 31434242.0 10.3390/nu11081952 bg3b88us 0.441637 Viswanathan_2010, Shi_J_2012, Taschuk_2020 Zhang_2015
14 Fehr_2018 Viral Macrodomains: Unique Mediators of Viral Replication and Pathogenesis Fehr, Anthony R.; Jankevicius, Gytis; Ahel, Ivan; Perlman, Stanley 2018 2018-07-31 PMC N PMC6003825 29268982.0 10.1016/j.tim.2017.11.011 km0qcmlh 0.410552 Taschuk_2020, Yasuda-Inoue_2013, den_Boon_2010, Klein_2011 Sun_D_2016, Watanabe_2019
15 Lin_Y_2017 Intrinsically disordered sequences enable modulation of protein phase separation through distributed tyrosine motifs Lin, Yuan; Currie, Simon L.; Rosen, Michael K. 2017 2017-11-17 COMM-USE N PMC5704491 28924037.0 10.1074/jbc.m117.800466 px0cz6qn 0.401202 Volmer_2010 Järvelin_2016, Zhang_2015
16 Azkanaz_2019 Protein quality control in the nucleolus safeguards recovery of epigenetic regulators after heat shock Azkanaz, Maria; Rodríguez López, Aida; de Boer, Bauke; Huiting, Wouter; Angrand, Pierre-Olivier; Vellenga, Edo; Kampinga, Harm H; Bergink, Steven; Martens, Joost HA; Schuringa, Jan Jacob; van den Boom, Vincent 2019 2019-06-14 COMM-USE N PMC6570483 31199242.0 10.7554/elife.45205 ekhj8ae8 0.399976 Dubois_2016, Abernathy_2015 Wang_2009
17 Chenon_2011 A viral deubiquitylating enzyme targets viral RNA-dependent RNA polymerase and affects viral infectivity Chenon, Mélanie; Camborde, Laurent; Cheminant, Soizic; Jupin, Isabelle 2011 2011-11-25 None N PMC3273391 22117220.0 10.1038/emboj.2011.424 tgqyl5aw 0.396873 Stork_2011, Yasuda-Inoue_2013
18 Grossegesse_2018 Global ubiquitination analysis reveals extensive modification and proteasomal degradation of cowpox virus proteins, but preservation of viral cores Grossegesse, Marica; Doellinger, Joerg; Fritsch, Annemarie; Laue, Michael; Piesker, Janett; Schaade, Lars; Nitsche, Andreas 2018 2018-01-29 None N PMC5788924 29379051.0 10.1038/s41598-018-20130-9 qb7umsyu 0.390236 den_Boon_2010 Zhang_2015, Yan_J_2020
19 Xiang_2020 VPTMdb: a viral post-translational modification database Yujia Xiang; Quan Zou; Lilin Zhao 2020 2020-04-02 BioRxiv N 10.1101/2020.04.01.019562 kl99afiu 0.385780 Wimmer_2015
20 Bui_Q_2009 Large Arf1 guanine nucleotide exchange factors: evolution, domain structure, and roles in membrane trafficking and human disease Bui, Quynh Trang; Golinelli-Cohen, Marie-Pierre; Jackson, Catherine L. 2009 2009-08-11 PMC N PMC7088145 19669794.0 10.1007/s00438-009-0473-3 3zvwu5bd 0.385378 Taschuk_2020, Yasuda-Inoue_2013, Clayton_2013 Xia_H_2015
21 Wimmer_2015 Viral Mimicry to Usurp Ubiquitin and SUMO Host Pathways Wimmer, Peter; Schreiner, Sabrina 2015 2015-08-28 COMM-USE N PMC4584293 26343706.0 10.3390/v7092849 vy4hfd62 0.384275 Viswanathan_2010, Taschuk_2020, Bailey-Elkin_2017, Berkhout_2006, Trobaugh_2017 van_Tol_2017, Bailey-Elkin_2017, Fung_2018
22 Salaun_2010 The intracellular dynamic of protein palmitoylation Salaun, Christine; Greaves, Jennifer; Chamberlain, Luke H. 2010 2010-12-27 NONCOMM N PMC3010063 21187327.0 10.1083/jcb.201008160 svn4e6w6 0.380950 Hurley_2014
23 Wang_2011 Regulation of the nucleocytoplasmic trafficking of viral and cellular proteins by ubiquitin and small ubiquitin-related modifiers Wang, Yao E.; Pernet, Olivier; Lee, Benhur 2011 2011-12-28 None N PMC3625690 22188262.0 10.1111/boc.201100105 j173ocu9 0.369764 Hurley_2014, Taschuk_2020, Tessier_2019 Fulcher_2011, Wimmer_2015, Bailey-Elkin_2017, Zhang_2015
24 Dial_2019 Coxsackievirus B3 Responds to Polyamine Depletion via Enhancement of 2A and 3C Protease Activity Dial, Courtney N.; Tate, Patrick M.; Kicmal, Thomas M.; Mounce, Bryan C. 2019 2019-04-30 COMM-USE N PMC6563312 31052199.0 10.3390/v11050403 sch7zhx7 0.369345 Trobaugh_2017, Berkhout_2006, Yasuda-Inoue_2013, Stork_2011, Haasnoot_2010 Sun_D_2016
25 Huang_2018 Ubiquitin–Proteasome System Is Required for Efficient Replication of Singapore Grouper Iridovirus Huang, Xiaohong; Wei, Shina; Ni, Songwei; Huang, Youhua; Qin, Qiwei 2018 2018-11-26 COMM-USE N PMC6275174 30534113.0 10.3389/fmicb.2018.02798 nypzyx8x 0.364681 Trobaugh_2017, Berkhout_2006 Si_X_2008, Sun_D_2016
26 Si_X_2008 Ubiquitination Is Required for Effective Replication of Coxsackievirus B3 Si, Xiaoning; Gao, Guang; Wong, Jerry; Wang, Yahong; Zhang, Jingchun; Luo, Honglin 2008 2008-07-09 COMM-USE N PMC2440516 18612413.0 10.1371/journal.pone.0002585 lrtt9r1h 0.354238 Trobaugh_2017 Yan_J_2020
27 Wang_2014 Dynamic RNA Modifications in Posttranscriptional Regulation Wang, Xiao; He, Chuan 2014 2014-10-02 PMC N PMC7129666 25280100.0 10.1016/j.molcel.2014.09.001 vqw0jdcl 0.352046 Trobaugh_2017, Haasnoot_2010, Moon_2012 Järvelin_2016, Gopinath_2015
28 Patil_2020 TRIM41-Mediated Ubiquitination of Nucleoprotein Limits Vesicular Stomatitis Virus Infection Patil, Girish; Xu, Lingling; Wu, Yakun; Song, Kun; Hao, Wenzhuo; Hua, Fang; Wang, Lingyan; Li, Shitao 2020 2020-01-22 COMM-USE N PMC7077221 31979016.0 10.3390/v12020131 jlib9v5j 0.340283 Yasuda-Inoue_2013 van_Tol_2017
29 Kellokumpu_2015 Glycosyltransferase complexes in eukaryotes: long-known, prevalent but still unrecognized Kellokumpu, Sakari; Hassinen, Antti; Glumoff, Tuomo 2015 2015-10-17 PMC N PMC7079781 26474840.0 10.1007/s00018-015-2066-0 xsuialnn 0.338505 Denison_2008, Emmott_2009, Dubois_2016
30 Viswanathan_2010 Viral hijacking of the host ubiquitin system to evade interferon responses Viswanathan, Kasinath; Früh, Klaus; DeFilippis, Victor 2010 2010-08-31 None N PMC2939720 20699190.0 10.1016/j.mib.2010.05.012 cj1xaygr 0.338069 Bailey-Elkin_2017 van_Tol_2017, Wimmer_2015
31 Bailey-Elkin_2017 Structure and Function of Viral Deubiquitinating Enzymes Bailey-Elkin, Ben A.; Knaap, Robert C.M.; Kikkert, Marjolein; Mark, Brian L. 2017 2017-11-10 PMC N PMC7094624 28625850.0 10.1016/j.jmb.2017.06.010 4v41s3wi 0.325179 Viswanathan_2010, Kim_S_2018 Wimmer_2015, van_Tol_2017, Watanabe_2019
32 Tom_C_2012 Fat chance! Getting a grip on a slippery modification Tom, Christopher M.B.; Martin, Brent R. 2012 2012-12-18 PMC N PMC3693556 23215442.0 10.1021/cb300607e zyr5uc98 0.321257 Hurley_2014, Salaun_2010 Salaun_2010
33 Luo_H_2010 Protein degradation systems in viral myocarditis leading to dilated cardiomyopathy Luo, Honglin; Wong, Jerry; Wong, Brian 2010 2010-01-15 PMC N PMC7109953 19578074.0 10.1093/cvr/cvp225 15c85zi4 0.316875 Mao_J_2019, Kim_S_2018, Shi_J_2012 Galluzzi_2008
34 Sinigalia_2012 The Human Cytomegalovirus DNA Polymerase Processivity Factor UL44 Is Modified by SUMO in a DNA-Dependent Manner Sinigalia, Elisa; Alvisi, Gualtiero; Segré, Chiara V.; Mercorelli, Beatrice; Muratore, Giulia; Winkler, Michael; Hsiao, He-Hsuan; Urlaub, Henning; Ripalti, Alessandro; Chiocca, Susanna; Palù, Giorgio; Loregian, Arianna 2012 2012-11-15 COMM-USE N PMC3499415 23166733.0 10.1371/journal.pone.0049630 ckpg9f97 0.304258 Yasuda-Inoue_2013, Stork_2011 Sun_D_2016