Topic 10 -- Abstracts with Biological Entities (English) - 75 Topics / Sub-Topic Model 12 - 15 Topics

cite ad title authors publish year publish time dataset abstract mentions covid pmcid pubmed id doi cord uid topic weight Similarity scispacy Similarity specter
1 Baillet_2019 E3 Ligase ITCH Interacts with the Z Matrix Protein of Lassa and Mopeia Viruses and Is Required for the Release of Infectious Particles Baillet, Nicolas; Krieger, Sophie; Carnec, Xavier; Mateo, Mathieu; Journeaux, Alexandra; Merabet, Othmann; Caro, Valérie; Tangy, Frédéric; Vidalain, Pierre-Olivier; Baize, Sylvain 2019 2019-12-31 COMM-USE N PMC7019300 31906112.0 10.3390/v12010049 fwjrnpoj 0.777214
2 Timmins_2004 Structural studies on the Ebola virus matrix protein VP40 indicate that matrix proteins of enveloped RNA viruses are analogues but not homologues Timmins, Joanna; Ruigrok, Rob W.H.; Weissenhorn, Winfried 2004 2004-04-01 PMC N PMC7110346 10.1111/j.1574-6968.2004.tb09480.x fd2tsr3t 0.757194 den_Boon_2010, Timmins_2004 Timmins_2004, Zhang_2015
3 Timmins_2004 Structural studies on the Ebola virus matrix protein VP40 indicate that matrix proteins of enveloped RNA viruses are analogues but not homologues Timmins, Joanna; Ruigrok, Rob W.H.; Weissenhorn, Winfried 2004 2004-04-15 PMC N PMC7127519 15108720.0 10.1016/j.femsle.2004.03.002 etin5i7y 0.745375 den_Boon_2010, Timmins_2004 Timmins_2004, Zhang_2015
4 Liang_2017 Chaperone-Mediated Autophagy Protein BAG3 Negatively Regulates Ebola and Marburg VP40-Mediated Egress Liang, Jingjing; Sagum, Cari A.; Bedford, Mark T.; Sidhu, Sachdev S.; Sudol, Marius; Han, Ziying; Harty, Ronald N. 2017 2017-01-11 COMM-USE N PMC5226679 28076420.0 10.1371/journal.ppat.1006132 l5kocy4f 0.625386 Yasuda-Inoue_2013 Yan_J_2020, Phongphaew_2017, Zhang_2015
5 Locker_1999 An Unconventional Role for Cytoplasmic Disulfide Bonds in Vaccinia Virus Proteins Locker, Jacomine Krijnse; Griffiths, Gareth 1999 1999-01-25 NONCOMM N PMC2132897 9922453.0 f7eavha1 0.617490 Volmer_2010, Narayanan_2003, den_Boon_2010 Zhang_2015
6 Wodrich_2010 A Capsid-Encoded PPxY-Motif Facilitates Adenovirus Entry Wodrich, Harald; Henaff, Daniel; Jammart, Baptist; Segura-Morales, Carolina; Seelmeir, Sigrid; Coux, Olivier; Ruzsics, Zsolt; Wiethoff, Christopher M.; Kremer, Eric J. 2010 2010-03-19 COMM-USE N PMC2841620 20333243.0 10.1371/journal.ppat.1000808 1mjmttec 0.578697 Yasuda-Inoue_2013
7 Stachowiak_2013 A cost-benefit analysis of the physical mechanisms of membrane curvature Stachowiak, Jeanne C.; Brodsky, Frances M.; Miller, Elizabeth A. 2013 2013-09-01 PMC N PMC3813008 23999615.0 10.1038/ncb2832 u5rgdc8j 0.576711 Hurley_2014, Tessier_2019
8 Happy_Miller_2012 Filovirus Entry into Cells – New Insights Happy Miller, Emily; Chandran, Kartik 2012 2012-04-01 PMC N PMC3322298 22445965.0 10.1016/j.coviro.2012.02.015 6apdckyv 0.531149 den_Boon_2010
9 Ziegler_2018 Host-Driven Phosphorylation Appears to Regulate the Budding Activity of the Lassa Virus Matrix Protein Ziegler, Christopher M.; Eisenhauer, Philip; Manuelyan, Inessa; Weir, Marion E.; Bruce, Emily A.; Ballif, Bryan A.; Botten, Jason 2018 2018-12-09 COMM-USE N PMC6313517 30544850.0 10.3390/pathogens7040097 kesr5rkj 0.522511 Volmer_2010 Sun_D_2016, Zhang_2015
10 Nieto-Torres_2015 Relevance of Viroporin Ion Channel Activity on Viral Replication and Pathogenesis Nieto-Torres, Jose L.; Verdiá-Báguena, Carmina; Castaño-Rodriguez, Carlos; Aguilella, Vicente M.; Enjuanes, Luis 2015 2015-07-03 COMM-USE N PMC4517115 26151305.0 10.3390/v7072786 v5o49ees 0.512401 Shi_J_2012, Taschuk_2020, Klein_2011, Cheng_2014, Kim_S_2018 Sze_C_2015, Fulcher_2011
11 Florin_2018 Tetraspanin Assemblies in Virus Infection Florin, Luise; Lang, Thorsten 2018 2018-05-25 COMM-USE N PMC5981178 29887866.0 10.3389/fimmu.2018.01140 5da6ph0y 0.510714 Trobaugh_2017, Tessier_2019 Zhang_2015, Fulcher_2011, Sun_D_2016
12 Ruch_2012 The Coronavirus E Protein: Assembly and Beyond Ruch, Travis R.; Machamer, Carolyn E. 2012 2012-03-08 COMM-USE N PMC3347032 22590676.0 10.3390/v4030363 gs69znat 0.505241 Volmer_2010, Trobaugh_2017, Berkhout_2006, Haasnoot_2010
13 Welsch_2007 More than one door – Budding of enveloped viruses through cellular membranes Welsch, Sonja; Müller, Barbara; Kräusslich, Hans-Georg 2007 2007-05-22 PMC N PMC7126970 17434167.0 10.1016/j.febslet.2007.03.060 24ktozs7 0.502329 den_Boon_2010, Lenard_2008 Villanueva_2005, Wulan_2015
14 UNKNOWN_1995 Envelope glycoprotein interactions in coronavirus assembly None 1995 1995-10-02 NONCOMM N PMC2199982 7593163.0 b9xvycyk 0.493998 Volmer_2010, Narayanan_2003
15 Yang_2016 A new role of neuraminidase (NA) in the influenza virus life cycle: implication for developing NA inhibitors with novel mechanism of action Yang, Jie; Liu, Shuwen; Du, Lanying; Jiang, Shibo 2016 2016-04-08 PMC N PMC7169148 27061123.0 10.1002/rmv.1879 za4ylcw1 0.482921 Berkhout_2006, Trobaugh_2017
16 Gout_2010 Co‐chaperone BAG3 and adenovirus penton base protein partnership Gout, E.; Gutkowska, M.; Takayama, S.; Reed, J.C.; Chroboczek, J. 2010 2010-07-06 PMC N PMC7166384 20607728.0 10.1002/jcb.22756 lweiwh3p 0.476282 Volmer_2010, Yasuda-Inoue_2013
17 Liu_D_2007 Coronavirus envelope protein: A small membrane protein with multiple functions Liu, D. X.; Yuan, Q.; Liao, Y. 2007 2007-05-29 PMC N PMC7079843 17530462.0 10.1007/s00018-007-7103-1 j4oh1z8m 0.458178 Hurley_2014, Trobaugh_2017, den_Boon_2010
18 Gordon_2019 Host and Viral Proteins Modulating Ebola and Marburg Virus Egress Gordon, Tamsin B.; Hayward, Joshua A.; Marsh, Glenn A.; Baker, Michelle L.; Tachedjian, Gilda 2019 2019-01-03 COMM-USE N PMC6357148 30609802.0 10.3390/v11010025 2l40gqk3 0.442814 den_Boon_2010, Mao_J_2019, Klein_2011 Sun_D_2016, Zhang_2015, Fulcher_2011
19 Baillet_2019 Autophagy Promotes Infectious Particle Production of Mopeia and Lassa Viruses Baillet, Nicolas; Krieger, Sophie; Journeaux, Alexandra; Caro, Valérie; Tangy, Frédéric; Vidalain, Pierre-Olivier; Baize, Sylvain 2019 2019-03-23 COMM-USE N PMC6466445 30909570.0 10.3390/v11030293 afnto2tz 0.436826 Ding_2017
20 Takahashi_2011 Function of Membrane Rafts in Viral Lifecycles and Host Cellular Response Takahashi, Tadanobu; Suzuki, Takashi 2011 2011-12-07 COMM-USE N PMC3235436 22191032.0 10.1155/2011/245090 96w28ygp 0.430787 den_Boon_2010, Lenard_2008 Neufeldt_2016, Sze_C_2015, Sun_D_2016
21 Carrasco_1995 Modification of Membrane Permeability by Animal Viruses Carrasco, Luis 1995 1995-12-31 PMC N 7793329.0 10.1016/s0065-3527(08)60058-5 nth8c1zr 0.424636 den_Boon_2010, Lenard_2008 Wulan_2015, Villanueva_2005
22 Emonet_2011 Arenavirus reverse genetics: New approaches for the investigation of arenavirus biology and development of antiviral strategies Emonet, Sebastien E.; Urata, Shuzo; de la Torre, Juan C. 2011 2011-03-15 PMC N PMC3057228 21324503.0 10.1016/j.virol.2011.01.013 lt8j5wjs 0.414055
23 Puschnik_2017 A CRISPR toolbox to study virus–host interactions Puschnik, Andreas S.; Majzoub, Karim; Ooi, Yaw Shin; Carette, Jan E. 2017 2017-04-19 None N PMC5800792 28420884.0 10.1038/nrmicro.2017.29 vb7380tp 0.407003 den_Boon_2010 Giorda_2013, Moens_2009, Meliopoulos_2012
24 Neuman_2011 A structural analysis of M protein in coronavirus assembly and morphology Neuman, Benjamin W.; Kiss, Gabriella; Kunding, Andreas H.; Bhella, David; Baksh, M. Fazil; Connelly, Stephen; Droese, Ben; Klaus, Joseph P.; Makino, Shinji; Sawicki, Stanley G.; Siddell, Stuart G.; Stamou, Dimitrios G.; Wilson, Ian A.; Kuhn, Peter; Buchmeier, Michael J. 2011 2011-04-30 None N PMC4486061 21130884.0 10.1016/j.jsb.2010.11.021 1eg1vf8b 0.404353 den_Boon_2010, Volmer_2010, Narayanan_2003, Trobaugh_2017 Zhang_2015, Popescu_2011
25 Ward_2016 The Golgi associated ERI3 is a Flavivirus host factor Ward, Alex Michael; Calvert, Meredith E. K.; Read, Leah R.; Kang, Seokyoung; Levitt, Brandt E.; Dimopoulos, George; Bradrick, Shelton S.; Gunaratne, Jayantha; Garcia-Blanco, Mariano A. 2016 2016-09-29 None N PMC5041148 27682269.0 10.1038/srep34379 7hbsxo7q 0.404321 Li_C_2014
26 Fischer_2011 Viral channel forming proteins — Modeling the target Fischer, Wolfgang B.; Hsu, Hao-Jen 2011 2011-02-28 PMC N PMC7094444 20546700.0 10.1016/j.bbamem.2010.05.014 il354z9v 0.400248 Volmer_2010 Nieva_2012, Sze_C_2015
27 Belouzard_2011 Hepatitis C virus entry into the hepatocyte Belouzard, Sandrine; Cocquerel, Laurence; Dubuisson, Jean 2011 2011-11-07 PMC N PMC7089486 10.2478/s11535-011-0076-y s15o0hie 0.398300 den_Boon_2010, Trobaugh_2017 Neufeldt_2016, Sun_D_2016
28 Wang_2017 Recent advances in the identification of the host factors involved in dengue virus replication Wang, Yi; Zhang, Ping 2017 2017-01-24 PMC N PMC6598876 28124222.0 10.1007/s12250-016-3902-6 51ooph3v 0.394844
29 Loureiro_2019 Virus–Host Interactions Involved in Lassa Virus Entry and Genome Replication Loureiro, María Eugenia; D’Antuono, Alejandra; López, Nora 2019 2019-01-29 COMM-USE N PMC6470645 30699976.0 10.3390/pathogens8010017 pyfbzyxp 0.392899
30 Pigeyre_2019 Interaction of a Densovirus with Glycans of the Peritrophic Matrix Mediates Oral Infection of the Lepidopteran Pest Spodoptera frugiperda Pigeyre, Laetitia; Schatz, Malvina; Ravallec, Marc; Gasmi, Leila; Nègre, Nicolas; Clouet, Cécile; Seveno, Martial; El Koulali, Khadija; Decourcelle, Mathilde; Guerardel, Yann; Cot, Didier; Dupressoir, Thierry; Gosselin-Grenet, Anne-Sophie; Ogliastro, Mylène 2019 2019-09-17 COMM-USE N PMC6783882 31533310.0 10.3390/v11090870 kje8lvgl 0.384118 Berkhout_2006, Trobaugh_2017, Herbert_2016, Haasnoot_2010, Shi_J_2012 Sun_D_2016
31 Lenard_2008 Viral Membranes Lenard, J. 2008 2008-12-31 PMC N PMC7149422 10.1016/b978-012374410-4.00530-6 3wz7k4vy 0.381258 den_Boon_2010 Villanueva_2005, Sze_C_2015, Wulan_2015, Giorda_2013
32 Lakdawala_2014 Influenza A Virus Assembly Intermediates Fuse in the Cytoplasm Lakdawala, Seema S.; Wu, Yicong; Wawrzusin, Peter; Kabat, Juraj; Broadbent, Andrew J.; Lamirande, Elaine W.; Fodor, Ervin; Altan-Bonnet, Nihal; Shroff, Hari; Subbarao, Kanta 2014 2014-03-06 COMM-USE N PMC3946384 24603687.0 10.1371/journal.ppat.1003971 mgvadkjv 0.378515 Volmer_2010, den_Boon_2010, Terrier_2016, Quiner_2010 Wulan_2015
33 Lai_C_2014 Nonstructural Protein 5A Is Incorporated into Hepatitis C Virus Low-Density Particle through Interaction with Core Protein and Microtubules during Intracellular Transport Lai, Chao-Kuen; Saxena, Vikas; Tseng, Chung-Hsin; Jeng, King-Song; Kohara, Michinori; Lai, Michael M. C. 2014 2014-06-06 COMM-USE N PMC4048239 24905011.0 10.1371/journal.pone.0099022 84zfabti 0.377203 Liu_H_2009, Narayanan_2003, Volmer_2010 Popescu_2011, Neufeldt_2016, Romero-Brey_2015
34 Thaa_2010 Viruses as vesicular carriers of the viral genome: A functional module perspective Thaa, Bastian; Hofmann, Klaus Peter; Veit, Michael 2010 2010-04-30 PMC N PMC7114299 20100522.0 10.1016/j.bbamcr.2010.01.011 y2zdu79n 0.375584 Tessier_2019, Hurley_2014 Fulcher_2011, Wulan_2015
35 Balinsky_2017 IRAV (FLJ11286), an Interferon-Stimulated Gene with Antiviral Activity against Dengue Virus, Interacts with MOV10 Balinsky, Corey A.; Schmeisser, Hana; Wells, Alexandra I.; Ganesan, Sundar; Jin, Tengchuan; Singh, Kavita; Zoon, Kathryn C. 2017 2017-02-14 COMM-USE N PMC5309953 27974568.0 10.1128/jvi.01606-16 795wuqz5 0.372826 Li_C_2014, Yasuda-Inoue_2013
36 Basak_2007 Reviewing Chandipura: A Vesiculovirus in Human Epidemics Basak, Soumen; Mondal, Arindam; Polley, Smarajit; Mukhopadhyay, Subhradip; Chattopadhyay, Dhrubajyoti 2007 2007-07-04 PMC N PMC7087735 17610154.0 10.1007/s10540-007-9054-z vwrbk5aw 0.367927 den_Boon_2010
37 Ward_2011 The taking of the cytoskeleton one two three: How viruses utilize the cytoskeleton during egress Ward, Brian M. 2011 2011-03-15 None N PMC3049855 21241997.0 10.1016/j.virol.2010.12.024 efkm1tg4 0.364126 den_Boon_2010 de_Haan_2005, Sze_C_2015, Grangeon_2012, Griffiths_1992
38 Ren_J_2013 Picornavirus uncoating intermediate captured in atomic detail Ren, Jingshan; Wang, Xiangxi; Hu, Zhongyu; Gao, Qiang; Sun, Yao; Li, Xuemei; Porta, Claudine; Walter, Thomas S.; Gilbert, Robert J.; Zhao, Yuguang; Axford, Danny; Williams, Mark; McAuley, Katherine; Rowlands, David J.; Yin, Weidong; Wang, Junzhi; Stuart, David I.; Rao, Zihe; Fry, Elizabeth E. 2013 2013-06-03 None N PMC3709478 23728514.0 10.1038/ncomms2889 f1frcjp3 0.352522 den_Boon_2010, Volmer_2010, Terrier_2016 Sun_D_2016
39 Larson_2019 EPS8 facilitates uncoating of influenza A virus Gloria P. Larson; Vy Tran; Shuǐqìng Yú; Yíngyún Caì; Christina A. Higgins; Danielle M. Smith; Steven F. Baker; Sheli R. Radoshitzky; Jens H. Kuhn; Andrew Mehle 2019 2019-03-28 BioRxiv N 10.1101/592485 muq5rkaa 0.350954 Trobaugh_2017, Li_C_2014, Yasuda-Inoue_2013 Popescu_2011
40 Merino‐Gracia_2011 The association of viral proteins with host cell dynein components during virus infection Merino‐Gracia, Javier; García‐Mayoral, María F.; Rodríguez‐Crespo, Ignacio 2011 2011-08-08 PMC N PMC7164101 21777384.0 10.1111/j.1742-4658.2011.08252.x efi8s46k 0.343612 Volmer_2010
41 Prasanth_2020 Topoisomerase III-ß is required for efficient replication of positive-sense RNA viruses K. Reddisiva Prasanth; Minato Hirano; W. Samuel Fagg; Eileen T. McAnarney; Chao Shan; Xuping Xie; Adam Hage; Colette A. Pietzsch; Alexander Bukreyev; Ricardo Rajsbaum; Pei-Yong Shi; Mark T. Bedford; Shelton S. Bradrick; Vineet Menachery; Mariano A. Garcia-Blanco 2020 2020-03-27 BioRxiv Y 10.1101/2020.03.24.005900 a0xfb9l4 0.337686 Stork_2011, Yasuda-Inoue_2013, Li_C_2014, den_Boon_2010
42 Ploubidou_2000 Vaccinia virus infection disrupts microtubule organization and centrosome function Ploubidou, Aspasia; Moreau, Violaine; Ashman, Keith; Reckmann, Inge; González, Cayetano; Way, Michael 2000 2000-08-01 PMC N PMC306617 10921875.0 10.1093/emboj/19.15.3932 mcuixluu 0.331893 Volmer_2010, den_Boon_2010 Zhang_2015, Wulan_2015, Fulcher_2011
43 Grove_2011 The cell biology of receptor-mediated virus entry Grove, Joe; Marsh, Mark 2011 2011-12-26 NONCOMM N PMC3246895 22123832.0 10.1083/jcb.201108131 v4op73hf 0.330917 Mao_J_2019, Kindler_2014 Giorda_2013
44 Ortiz-Riaño_2012 D471G Mutation in LCMV-NP Affects its Ability to Self-associate and Results in a Dominant Negative Effect in Viral RNA Synthesis Ortiz-Riaño, Emilio; Cheng, Benson Y. H.; de la Torre, Juan C.; Martínez-Sobrido, Luis 2012 2012-10-16 COMM-USE N PMC3497045 23202457.0 10.3390/v4102137 xtsi663k 0.319612 Stork_2011, Volmer_2010, Yasuda-Inoue_2013 Yan_J_2020
45 Sze_C_2015 Viral Membrane Channels: Role and Function in the Virus Life Cycle Sze, Ching Wooen; Tan, Yee-Joo 2015 2015-06-23 COMM-USE N PMC4488738 26110585.0 10.3390/v7062771 0gkonrzw 0.318266 den_Boon_2010, Shi_J_2012, Trobaugh_2017, Kim_S_2018, Klein_2011 Giorda_2013, Fulcher_2011, Sun_D_2016
46 Griffiths_1992 Cell biology of viruses that assemble along the biosynthetic pathway Griffiths, Gareth; Rottier, Peter 1992 1992-10-31 PMC N PMC7129301 1333835.0 10.1016/1043-4682(92)90022-n t42gasmz 0.315267 Volmer_2010, Haasnoot_2010, den_Boon_2010, Trobaugh_2017 Grangeon_2012, Watanabe_2019, Sun_D_2016, Giorda_2013
47 Wang_2011 Viral proteins function as ion channels Wang, Kai; Xie, Shiqi; Sun, Bing 2011 2011-02-28 PMC N PMC7094589 20478263.0 10.1016/j.bbamem.2010.05.006 d0bswz2u 0.307011 den_Boon_2010, Yasuda-Inoue_2013, Trobaugh_2017 Sze_C_2015, Nieto-Torres_2015, Fulcher_2011, Nieva_2012
48 Teissier_2010 Targeting Cell Entry of Enveloped Viruses as an Antiviral Strategy Teissier, Elodie; Penin, François; Pécheur, Eve-Isabelle 2010 2010-12-30 COMM-USE N PMC6259279 21193846.0 10.3390/molecules16010221 nqw6y8ku 0.303608 Berkhout_2006, Trobaugh_2017, Kindler_2014 Watanabe_2019, A_Abdullah_2018