Topic 11 -- Abstracts with Biological Entities (English) - 75 Topics / Sub-Topic Model 12 - 15 Topics

cite ad title authors publish year publish time dataset abstract mentions covid pmcid pubmed id doi cord uid topic weight Similarity scispacy Similarity specter
1 FENNER_1987 CHAPTER 1 Structure and Composition of Viruses FENNER, FRANK; BACHMANN, PETER A.; GIBBS, E. PAUL J.; MURPHY, FREDERICK A.; STUDDERT, MICHAEL J.; WHITE, DAVID O. 1987 1987-12-31 PMC N 10.1016/b978-0-12-253055-5.50005-0 16wrx34u 0.711015 Volmer_2010, den_Boon_2010, Payne_2017, Stork_2011
2 Mateu_2013 Introduction: The Structural Basis of Virus Function Mateu, Mauricio G. 2013 2013-02-16 PMC N PMC7120296 23737047.0 10.1007/978-94-007-6552-8_1 4lcqag0z 0.615377 Denison_2008, Hull_2014, den_Boon_2010, Cullen_2009, Berkhout_2006 Wulan_2015, Sun_D_2016, Risco_2013
3 Tang_2005 Three-dimensional structure of the bacteriophage P22 tail machine Tang, Liang; Marion, William R; Cingolani, Gino; Prevelige, Peter E; Johnson, John E 2005 2005-06-02 PMC N PMC1150889 15933718.0 10.1038/sj.emboj.7600695 0x1jhya6 0.609522 den_Boon_2010, Dubois_2016, Wu_B_2009
4 Ahlquist_2006 Parallels among positive-strand RNA viruses, reverse-transcribing viruses and double-stranded RNA viruses Ahlquist, Paul 2006 2006-04-03 PMC N PMC7097367 16582931.0 10.1038/nrmicro1389 b648h28z 0.545564 den_Boon_2010, Payne_2017 Diaz_2012
5 Aris-Brosou_2019 Viral Long-Term Evolutionary Strategies Favor Stability over Proliferation Aris-Brosou, Stéphane; Parent, Louis; Ibeh, Neke 2019 2019-07-24 COMM-USE N PMC6722887 31344814.0 10.3390/v11080677 qeao4ghg 0.539979 den_Boon_2010, Trobaugh_2017 Koonin_2013
6 Luque_2009 Infectious Bursal Disease Virus: Ribonucleoprotein Complexes of a Double-Stranded RNA Virus Luque, Daniel; Saugar, Irene; Rejas, María Teresa; Carrascosa, José L.; Rodríguez, José F.; Castón, José R. 2009 2009-02-27 PMC N 19063900.0 10.1016/j.jmb.2008.11.029 ax8ybkcr 0.523420 Stork_2011, den_Boon_2010, Yasuda-Inoue_2013
7 Gerits_2012 Agnoprotein of mammalian polyomaviruses Gerits, Nancy; Moens, Ugo 2012 2012-10-25 None N PMC7111918 22726243.0 10.1016/j.virol.2012.05.024 jqq7fh5j 0.520819 den_Boon_2010, Yasuda-Inoue_2013, Stork_2011
8 Sekine_2017 Spatiotemporal dynamics of HSV genome nuclear entry and compaction state transitions using bioorthogonal chemistry and super-resolution microscopy Sekine, Eiki; Schmidt, Nora; Gaboriau, David; O’Hare, Peter 2017 2017-11-09 COMM-USE N PMC5697887 29121649.0 10.1371/journal.ppat.1006721 kq25hk8v 0.508444 den_Boon_2010, Volmer_2010, Dubois_2016, Payne_2017 Wulan_2015
9 Krishna_2005 Identification of Structural Domains Involved in Astrovirus Capsid Biology Krishna, Neel K. 2005 2005-03-01 PMC N PMC1393289 15802951.0 10.1089/vim.2005.18.17 cdw6hvyx 0.473585 den_Boon_2010, Trobaugh_2017, Stork_2011, Taschuk_2020 Zhang_2015, Sokoloski_2017
10 Modrow_2013 Viruses: Definition, Structure, Classification Modrow, Susanne; Falke, Dietrich; Truyen, Uwe; Schätzl, Hermann 2013 2013-08-12 PMC N PMC7123905 10.1007/978-3-642-20718-1_2 37f9y9ib 0.470180 Denison_2008, den_Boon_2010, Payne_2017 Wulan_2015, Neufeldt_2016, Chemudupati_2019
11 Koonin_2013 A virocentric perspective on the evolution of life Koonin, Eugene V; Dolja, Valerian V 2013 2013-10-31 None N PMC4326007 23850169.0 10.1016/j.coviro.2013.06.008 kjyuxc3g 0.466502 den_Boon_2010, Berkhout_2006, Trobaugh_2017 Wulan_2015, Rodríguez_2020, Walker_2011
12 Zhou_2009 Viral calciomics: Interplays between Ca2+ and virus Zhou, Yubin; Frey, Teryl K.; Yang, Jenny J. 2009 2009-07-31 None N PMC3449087 19535138.0 10.1016/j.ceca.2009.05.005 jbzqem3m 0.461663 Taschuk_2020, Trobaugh_2017, Volmer_2010, Tessier_2019 Zhang_2015, Sun_D_2016
13 Comas-Garcia_2019 Packaging of Genomic RNA in Positive-Sense Single-Stranded RNA Viruses: A Complex Story Comas-Garcia, Mauricio 2019 2019-03-13 COMM-USE N PMC6466141 30871184.0 10.3390/v11030253 koo0d6g9 0.455197 den_Boon_2010, Stork_2011, Trobaugh_2017, Payne_2017
14 Gray_1996 Plant virus proteins involved in natural vector transmission Gray, Stewart M. 1996 1996-07-31 PMC N 8829333.0 10.1016/0966-842x(96)10040-8 pl88otue 0.453767 den_Boon_2010 Giorda_2013
15 Lawton_2000 Mechanism of genome transcription in segmented dsRNA viruses Lawton, Jeffrey A; Estes, Mary K; Venkataram Prasad, B.V 2000 2000-12-31 PMC N 11050943.0 10.1016/s0065-3527(00)55004-0 bbpmlo3c 0.447929 den_Boon_2010, Trobaugh_2017, Stork_2011 Wulan_2015
16 Ojosnegros_2011 Quasispecies as a matter of fact: Viruses and beyond Ojosnegros, Samuel; Perales, Celia; Mas, Antonio; Domingo, Esteban 2011 2011-12-31 PMC N 21945638.0 10.1016/j.virusres.2011.09.018 gi56zndh 0.447789 Trobaugh_2017, den_Boon_2010, Denison_2008, Berkhout_2006
17 Lomonossoff_2018 Chapter Six TMV Particles: The Journey From Fundamental Studies to Bionanotechnology Applications Lomonossoff, George P.; Wege, Christina 2018 2018-12-31 PMC N PMC7112118 30266172.0 10.1016/bs.aivir.2018.06.003 emmtplv3 0.439314 Shulla_2016 Sun_D_2016
18 San_Martín_2013 Structure and Assembly of Complex Viruses San Martín, Carmen 2013 2013-02-16 PMC N PMC7122652 23737057.0 10.1007/978-94-007-6552-8_11 0x3nt6si 0.436583 den_Boon_2010, Volmer_2010, Zúñiga_2009 Hellen_1992, Wulan_2015
19 Rodríguez_2020 Chapter 3 Viral Emerging Pathogen Evolution Rodríguez, Virginia; Lagares, Alfredo; Arteaga, Heiser; Mattar, Salim; Ruiz, Luis Carlos 2020 2020-12-31 PMC N PMC7149897 10.1016/b978-0-12-819400-3.00003-x f3g3ek5u 0.431365 Denison_2008, Rivas_2016, Berkhout_2006 Galluzzi_2008, Koonin_2013
20 Schlesinger_1993 Alphaviruses — vectors for the expression of heterologous genes Schlesinger, Sondra 1993 1993-01-31 PMC N 7764041.0 10.1016/0167-7799(93)90070-p 884d196k 0.430853 den_Boon_2010, Trobaugh_2017, Payne_2017
21 de_Haan_2005 Molecular Interactions in the Assembly of Coronaviruses de Haan, Cornelis A.M.; Rottier, Peter J.M. 2005 2005-12-31 PMC N PMC7112327 16139595.0 10.1016/s0065-3527(05)64006-7 230p8rsf 0.427771 den_Boon_2010, Tessier_2019 Sun_D_2016, Zhang_2015
22 Hellen_1992 The role of proteolytic processing in the morphogenesis of virus particles Hellen, C. U. T.; Wimmer, E. 1992 1992-01-01 PMC N PMC7087542 1740191.0 10.1007/bf01923512 pk2vmnns 0.424477 den_Boon_2010, Stork_2011, Taschuk_2020, Trobaugh_2017 Sun_D_2016
23 Kaján_2019 Virus–Host Coevolution with a Focus on Animal and Human DNA Viruses Kaján, Győző L.; Doszpoly, Andor; Tarján, Zoltán László; Vidovszky, Márton Z.; Papp, Tibor 2019 2019-10-10 COMM-USE N PMC6943099 31599342.0 10.1007/s00239-019-09913-4 33fs6exl 0.422035 Denison_2008, den_Boon_2010, Rivas_2016 Rodríguez_2020, Koonin_2013
24 Chang_2014 The SARS coronavirus nucleocapsid protein – Forms and functions Chang, Chung-ke; Hou, Ming-Hon; Chang, Chi-Fon; Hsiao, Chwan-Deng; Huang, Tai-huang 2014 2014-03-31 PMC N PMC7113676 24418573.0 10.1016/j.antiviral.2013.12.009 6fue84x6 0.411231 den_Boon_2010, Stork_2011, Volmer_2010 Zhang_2015, Sun_D_2016
25 Chang_2012 Functional Studies of ssDNA Binding Ability of MarR Family Protein TcaR from Staphylococcus epidermidis Chang, Yu-Ming; Chen, Cammy K. -M.; Chang, Yuan-Chih; Jeng, Wen-Yih; Hou, Ming-Hon; Wang, Andrew H. -J. 2012 2012-09-21 COMM-USE N PMC3448645 23029170.0 10.1371/journal.pone.0045665 r7y1cqou 0.404487 Stork_2011, Yasuda-Inoue_2013 Zhang_2015
26 Mushegian_2018 Sequence analysis of malacoherpesvirus proteins: Pan-herpesvirus capsid module and replication enzymes with an ancient connection to “Megavirales” Mushegian, Arcady; Karin, Eli Levy; Pupko, Tal 2018 2018-01-01 PMC N 29065352.0 10.1016/j.virol.2017.10.009 elmqg45v 0.391317 den_Boon_2010
27 Hernandez-Alias_2020 Translational adaptation of human viruses to the tissues they infect Xavier Hernandez-Alias; Martin Schaefer; Luis Serrano 2020 2020-04-07 BioRxiv Y 10.1101/2020.04.06.027557 0rk2dw4e 0.390803 Trobaugh_2017, Volmer_2010, Berkhout_2006
28 Rampersad_2018 Chapter 3 Replication and Expression Strategies of Viruses Rampersad, Sephra; Tennant, Paula 2018 2018-12-31 PMC N PMC7158166 10.1016/b978-0-12-811257-1.00003-6 tvdx9gkk 0.383517 den_Boon_2010, Trobaugh_2017, Berkhout_2006, Hull_2014, Haasnoot_2010 Bagga_2014, Giorda_2013, Netherton_2007, Wulan_2015
29 Louten_2016 Chapter 4 Virus Replication Louten, Jennifer 2016 2016-12-31 PMC N PMC7149683 10.1016/b978-0-12-800947-5.00004-1 q92fd2lo 0.376307 den_Boon_2010, Lenard_2008 Giorda_2013, Wulan_2015
30 Haimovich_2020 Identification and enrichment of SECReTE cis-acting RNA elements in the Coronaviridae and other (+) single-strand RNA viruses Gal Haimovich; Tsviya Olender; Camila Baez; Jeffrey E Gerst 2020 2020-04-20 BioRxiv Y 10.1101/2020.04.20.050088 2bh5j5p0 0.374808 Yasuda-Inoue_2013, Volmer_2010, Stork_2011, den_Boon_2010
31 Godet_2012 Comparative nucleic acid chaperone properties of the nucleocapsid protein NCp7 and Tat protein of HIV-1 Godet, Julien; Boudier, Christian; Humbert, Nicolas; Ivanyi-Nagy, Roland; Darlix, Jean-Luc; Mély, Yves 2012 2012-11-30 PMC N PMC7114403 22743066.0 10.1016/j.virusres.2012.06.021 z22t57ju 0.372478 Stork_2011, Yasuda-Inoue_2013 Xia_H_2015, Gopinath_2015, Zhang_2015
32 Narayanan_2003 Characterization of N protein self-association in coronavirus ribonucleoprotein complexes Narayanan, Krishna; Kim, Kyongmin Hwang; Makino, Shinji 2003 2003-12-31 PMC N PMC7125804 14659560.0 10.1016/j.virusres.2003.08.021 67uqildl 0.369189 Stork_2011, den_Boon_2010 Zhang_2015
33 Stehle_2009 Specificity switching in virus–receptor complexes Stehle, Thilo; Casasnovas, José M 2009 2009-04-30 PMC N PMC7126087 19342221.0 10.1016/j.sbi.2009.02.013 nxjt8lo2 0.367691 Trobaugh_2017, Berkhout_2006, Haasnoot_2010 Watanabe_2019
34 Samuel_1989 Polycistronic Animal Virus mRNAs Samuel, Charles E. 1989 1989-12-31 PMC N 2505328.0 10.1016/s0079-6603(08)60697-2 65hqvwg9 0.367034 Payne_2017, den_Boon_2010 Wulan_2015
35 Hyatt_1990 Virological applications of the grid-cell-culture technique Hyatt, Alex D.; Eaton, Bryan T. 1990 1990-12-31 PMC N 1966471.0 10.1016/0892-0354(90)90011-g qwgde9uu 0.365530 den_Boon_2010, Volmer_2010, Denison_2008, Trobaugh_2017
36 Domingo_2016 Chapter 4 Interaction of Virus Populations with Their Hosts Domingo, Esteban 2016 2016-12-31 PMC N PMC7150142 10.1016/b978-0-12-800837-9.00004-6 bl5bagvg 0.355345 Rivas_2016 Rodríguez_2020, Giorda_2013
37 Wang_2018 Imaging, Tracking and Computational Analyses of Virus Entry and Egress with the Cytoskeleton Wang, I-Hsuan; Burckhardt, Christoph J.; Yakimovich, Artur; Greber, Urs F. 2018 2018-03-31 COMM-USE N PMC5923460 29614729.0 10.3390/v10040166 q6kx8eo7 0.354903 den_Boon_2010, Trobaugh_2017, Hull_2014 Risco_2013, Netherton_2007, Wulan_2015
38 Darlix_2014 Retrospective on the all-in-one retroviral nucleocapsid protein Darlix, Jean-Luc; de Rocquigny, Hugues; Mauffret, Olivier; Mély, Yves 2014 2014-11-26 PMC N PMC7114435 24907482.0 10.1016/j.virusres.2014.05.011 hhv99i7f 0.346911 Trobaugh_2017, Stork_2011, den_Boon_2010 Sun_D_2016, Zhang_2015, Wulan_2015
39 Yamauchi_2016 Principles of Virus Uncoating: Cues and the Snooker Ball Yamauchi, Yohei; Greber, Urs F. 2016 2016-03-31 PMC N PMC7169695 26875443.0 10.1111/tra.12387 tfp7ln6z 0.345040 Mao_J_2019, Kindler_2014, Shi_J_2012, Cheng_2014
40 Guo_F_2017 HBV core protein allosteric modulators differentially alter cccDNA biosynthesis from de novo infection and intracellular amplification pathways Guo, Fang; Zhao, Qiong; Sheraz, Muhammad; Cheng, Junjun; Qi, Yonghe; Su, Qing; Cuconati, Andrea; Wei, Lai; Du, Yanming; Li, Wenhui; Chang, Jinhong; Guo, Ju-Tao 2017 2017-09-25 COMM-USE N PMC5629035 28945802.0 10.1371/journal.ppat.1006658 m3y35ozx 0.324342 Stork_2011, den_Boon_2010 Neufeldt_2016, Chemudupati_2019