Topic 04 -- Abstracts with Biological Entities (English) - 75 Topics / Sub-Topic Model 12 - 15 Topics

cite ad title authors publish year publish time dataset abstract mentions covid pmcid pubmed id doi cord uid topic weight Similarity scispacy Similarity specter
1 Li_S_2012 Proteomics Defines Protein Interaction Network of Signaling Pathways Li, Shitao 2012 2012-12-27 PMC N PMC7123116 10.1007/978-94-007-5811-7_2 elb93kp6 0.866102 Bansal_2020, Berkhout_2006 Zhang_2015
2 Striebinger_2013 A High-Throughput Yeast Two-Hybrid Protocol to Determine Virus-Host Protein Interactions Striebinger, Hannah; Koegl, Manfred; Bailer, Susanne M. 2013 2013-07-20 PMC N PMC7122120 23996246.0 10.1007/978-1-62703-601-6_1 zbjaslsa 0.843306 He_R_2008, Berkhout_2006
3 Bailer_2009 Connecting viral with cellular interactomes Bailer, SM; Haas, J 2009 2009-08-31 PMC N PMC7108267 19632888.0 10.1016/j.mib.2009.06.004 w4z5avld 0.768584 Zhang_2015, Yang_2014
4 Alguwaizani_2018 Predicting Interactions between Virus and Host Proteins Using Repeat Patterns and Composition of Amino Acids Alguwaizani, Saud; Park, Byungkyu; Zhou, Xiang; Huang, De-Shuang; Han, Kyungsook 2018 2018-05-09 COMM-USE N PMC5966669 29854357.0 10.1155/2018/1391265 0dxrai3j 0.746202 Zhou_2018, Goodacre_2020
5 He_R_2008 Mammalian Two-Hybrid Assay for Detecting Protein-Protein Interactions in Vivo He, Runtao; Li, Xuguang 2008 2008-01-01 PMC N PMC7120061 18370113.0 10.1007/978-1-59745-188-8_22 fc24n7f8 0.745365 Tessier_2019, Berkhout_2006 Zhang_2015
6 Kaloyanova_2014 Quantitative Proteomic Identification of Host Factors Involved in the Salmonella typhimurium Infection Cycle Kaloyanova, Dora; Vogels, Mijke; van Balkom, Bas W. M.; Helms, J. Bernd 2014 2014-09-08 PMC N PMC7121999 25253246.0 10.1007/978-1-4939-1625-2_2 1ztl96j1 0.745095 Volmer_2010, Trobaugh_2017, Berkhout_2006, Herbert_2016 Zhang_2015, Lam_Y_2009
7 Ren_X_2012 Proteomic analysis of purified Newcastle disease virus particles Ren, Xiangpeng; Xue, Chunyi; Kong, Qingming; Zhang, Chengwen; Bi, Yingzuo; Cao, Yongchang 2012 2012-05-09 COMM-USE N PMC3413529 22571704.0 10.1186/1477-5956-10-32 trl5qsyd 0.715789 Volmer_2010, den_Boon_2010 Zhang_2015, Kong_2010, Zhang_2010
8 Enard_2015 Viruses are a dominant driver of protein adaptation in mammals David Enard; Le Cai; Carina Gwenapp; Dmitri A Petrov 2015 2015-10-18 BioRxiv N 10.1101/029397 q5iylws9 0.713945 Berkhout_2006, Taschuk_2020, Haasnoot_2010, Volmer_2010, Trobaugh_2017 Enard_2016
9 Enard_2016 Viruses are a dominant driver of protein adaptation in mammals Enard, David; Cai, Le; Gwennap, Carina; Petrov, Dmitri A 2016 2016-05-17 COMM-USE N PMC4869911 27187613.0 10.7554/elife.12469 mjaqt6wk 0.704631 Volmer_2010, Berkhout_2006, Haasnoot_2010, Taschuk_2020, Trobaugh_2017 Enard_2015
10 Fasolo_2009 Protein Microarrays Fasolo, Joseph; Snyder, Michael 2009 2009-04-01 PMC N PMC7122403 19521827.0 10.1007/978-1-59745-540-4_12 39ix21x1 0.667473
11 Zhang_2010 Profiling of cellular proteins in porcine reproductive and respiratory syndrome virus virions by proteomics analysis Zhang, Chengwen; Xue, Chunyi; Li, Yan; Kong, Qingming; Ren, Xiangpeng; Li, Xiaoming; Shu, Dingming; Bi, Yingzuo; Cao, Yongchang 2010 2010-09-18 COMM-USE N PMC2949843 20849641.0 10.1186/1743-422x-7-242 9vpzk6wu 0.666931 Volmer_2010, den_Boon_2010, Shi_S_2005 Zhang_2015, Kong_2010, Ren_X_2012
12 Vidalain_2014 A Field-Proven Yeast Two-Hybrid Protocol Used to Identify Coronavirus–Host Protein–Protein Interactions Vidalain, Pierre-Olivier; Jacob, Yves; Hagemeijer, Marne C.; Jones, Louis M.; Neveu, Grégory; Roussarie, Jean-Pierre; Rottier, Peter J. M.; Tangy, Frédéric; de Haan, Cornelis A. M. 2014 2014-12-18 PMC N PMC7121825 25720483.0 10.1007/978-1-4939-2438-7_18 qmkneuj5 0.659978 Berkhout_2006, Trobaugh_2017, Haasnoot_2010 Zhang_2015
13 Mancone_2013 Applying proteomic technology to clinical virology Mancone, C.; Ciccosanti, F.; Montaldo, C.; Perdomo, A.B.; Piacentini, M.; Alonzi, T.; Fimia, G.M.; Tripodi, M. 2013 2013-01-31 PMC N PMC7129767 23034105.0 10.1111/1469-0691.12029 a4nzeroz 0.652472 Watanabe_2019
14 Lam_Y_2009 Proteomics Analysis of the Nucleolus in Adenovirus-infected Cells Lam, Yun W.; Evans, Vanessa C.; Heesom, Kate J.; Lamond, Angus I.; Matthews, David A. 2009 2009-10-07 NONCOMM N PMC2808258 19812395.0 10.1074/mcp.m900338-mcp200 jgxbpy4j 0.636402 Volmer_2010, Trobaugh_2017, Haasnoot_2010 Zhang_2015, Wulan_2015
15 Gerold_2016 Decoding protein networks during virus entry by quantitative proteomics Gerold, Gisa; Bruening, Janina; Pietschmann, Thomas 2016 2016-06-15 PMC N PMC4914609 26365680.0 10.1016/j.virusres.2015.09.006 9bvyp21d 0.635690 Trobaugh_2017, Berkhout_2006, Tessier_2019, Cullen_2009 Zhang_2015, Popescu_2011, Fulcher_2011
16 Kong_2010 Proteomic analysis of purified coronavirus infectious bronchitis virus particles Kong, Qingming; Xue, Chunyi; Ren, Xiangpeng; Zhang, Chengwen; Li, Linlin; Shu, Dingming; Bi, Yingzuo; Cao, Yongchang 2010 2010-06-09 COMM-USE N PMC2909931 20534109.0 10.1186/1477-5956-8-29 7hiss0j3 0.628008 Volmer_2010, Shi_S_2005, den_Boon_2010, Trobaugh_2017 Zhang_2015
17 Jäger_2011 Purification and characterization of HIV–human protein complexes Jäger, Stefanie; Gulbahce, Natali; Cimermancic, Peter; Kane, Joshua; He, Nanhai; Chou, Seemay; D’Orso, Iván; Fernandes, Jason; Jang, Gwendolyn; Frankel, Alan D.; Alber, Tom; Zhou, Qiang; Krogan, Nevan J. 2011 2011-01-31 None N PMC3076283 20708689.0 10.1016/j.ymeth.2010.08.007 9cjo5gx4 0.623636 Berkhout_2006, Trobaugh_2017, Cullen_2009 Zhang_2015, Sun_D_2016
18 Zhou_2018 A generalized approach to predicting protein-protein interactions between virus and host Zhou, Xiang; Park, Byungkyu; Choi, Daesik; Han, Kyungsook 2018 2018-08-13 COMM-USE N PMC6101077 30367586.0 10.1186/s12864-018-4924-2 4uvezfqm 0.615175 Berkhout_2006, Trobaugh_2017 Goodacre_2020, Durmuş_2017, Popescu_2011, Han_L_2017
19 Čiplys_2011 Overexpression of human virus surface glycoprotein precursors induces cytosolic unfolded protein response in Saccharomyces cerevisiae Čiplys, Evaldas; Samuel, Dhanraj; Juozapaitis, Mindaugas; Sasnauskas, Kęstutis; Slibinskas, Rimantas 2011 2011-05-19 COMM-USE N PMC3120639 21595909.0 10.1186/1475-2859-10-37 9i798wge 0.605094 Volmer_2010, Stork_2011, Shi_S_2000, Trobaugh_2017, Stoecklin_2012 Zhang_2015
20 Wang_2014 Interactome Profile of the Host Cellular Proteins and the Nonstructural Protein 2 of Porcine Reproductive and Respiratory Syndrome Virus Wang, Li; Zhou, Lei; Zhang, Han; Li, Yan; Ge, Xinna; Guo, Xin; Yu, Kangzhen; Yang, Hanchun 2014 2014-06-05 COMM-USE N PMC4047090 24901321.0 10.1371/journal.pone.0099176 ivz4r389 0.579504 Trobaugh_2017, Shi_S_2005, Yasuda-Inoue_2013 Zhang_2015
21 Moerdyk-Schauwecker_2009 Analysis of virion associated host proteins in vesicular stomatitis virus using a proteomics approach Moerdyk-Schauwecker, Megan; Hwang, Sun-Il; Grdzelishvili, Valery Z 2009 2009-10-12 COMM-USE N PMC2770056 19821998.0 10.1186/1743-422x-6-166 7qrcah56 0.578549 den_Boon_2010, Trobaugh_2017, Volmer_2010 Zhang_2015
22 Arnold_2012 Computational analysis of interactomes: Current and future perspectives for bioinformatics approaches to model the host–pathogen interaction space Arnold, Roland; Boonen, Kurt; Sun, Mark G.F.; Kim, Philip M. 2012 2012-08-31 PMC N PMC7128575 22750305.0 10.1016/j.ymeth.2012.06.011 8ef74ltg 0.564177 Berkhout_2006, Wilson_2012, Trobaugh_2017 Durmuş_2017, Zhang_2015
23 Andréola_2012 Yeast and the AIDS Virus: The Odd Couple Andréola, Marie-Line; Litvak, Simon 2012 2012-06-17 PMC N PMC3385842 22778552.0 10.1155/2012/549020 rt0uxy1d 0.561316 Berkhout_2006, Volmer_2010, Haasnoot_2010 Sun_D_2016
24 Goodacre_2020 Protein-protein interactions of human viruses Goodacre, Norman; Devkota, Prajwal; Bae, Eunhae; Wuchty, Stefan; Uetz, Peter 2020 2020-03-31 PMC N PMC7102568 30031213.0 10.1016/j.semcdb.2018.07.018 7rnf2iyw 0.540098 Trobaugh_2017, Berkhout_2006, Rivas_2016, Haasnoot_2010 Durmuş_2017, Popescu_2011, Zhang_2015
25 Liu_Y_2012 Infectomics Screening for Novel Antiviral Drug Targets Liu, Yuan; Yin, Qi; Yuan, Yao; Yang, Wenyong; Jiang, Chuangui; Huang, Canhua 2012 2012-10-16 PMC N PMC7163650 10.1002/ddr.21027 qh3q2ncu 0.531994 Berkhout_2006, Trobaugh_2017, Haasnoot_2010, Shi_J_2012
26 Kodiha_2011 Computer-based fluorescence quantification: a novel approach to study nucleolar biology Kodiha, Mohamed; Bański, Piotr; Stochaj, Ursula 2011 2011-06-03 COMM-USE N PMC3126779 21639891.0 10.1186/1471-2121-12-25 lnabmwgp 0.531843 Dubois_2016, Emmott_2009, Volmer_2010, Tessier_2019, Moon_2012 Jarboui_2012, Sirri_2007, Rossignol_2015
27 Scott_2011 NoD: a Nucleolar localization sequence detector for eukaryotic and viral proteins Scott, Michelle S; Troshin, Peter V; Barton, Geoffrey J 2011 2011-08-03 COMM-USE N PMC3166288 21812952.0 10.1186/1471-2105-12-317 59yvbupx 0.527926 Zhang_2015, Fulcher_2011, Wulan_2015
28 Lippé_2012 Deciphering Novel Host–Herpesvirus Interactions by Virion Proteomics Lippé, Roger 2012 2012-05-28 NONCOMM N PMC3390586 22783234.0 10.3389/fmicb.2012.00181 iuo2cw23 0.510108 Cullen_2009 Zhang_2015, Watanabe_2019, Sun_D_2016, Royle_2015
29 Müller_2019 A Spotlight on Viruses—Application of Click Chemistry to Visualize Virus-Cell Interactions Müller, Thorsten G.; Sakin, Volkan; Müller, Barbara 2019 2019-01-29 COMM-USE N PMC6385038 30700005.0 10.3390/molecules24030481 gq6k0f3q 0.506756 Berkhout_2006, Trobaugh_2017, Cullen_2009 Giorda_2013
30 Zhao_2017 Yeast for virus research Zhao, Richard Yuqi 2017 2017-09-18 COMM-USE N PMC5657823 29082230.0 10.15698/mic2017.10.592 cxijck5d 0.490511 den_Boon_2010, Berkhout_2006, Taschuk_2020, Li_Z_2011 Bagga_2014, Andréola_2012, Wulan_2015
31 Munday_2010 Quantitative proteomic analysis of A549 cells infected with human respiratory syncytial virus subgroup B using SILAC coupled to LC‐MS/MS C. Munday, Diane; Hiscox, Julian A.; Barr, John N. 2010 2010-11-26 PMC N PMC7167978 21110324.0 10.1002/pmic.201000228 c2fynyq8 0.485670 Volmer_2010, Trobaugh_2017, Haasnoot_2010
32 Tetz_2018 Prion-like Domains in Eukaryotic Viruses Tetz, George; Tetz, Victor 2018 2018-06-12 COMM-USE N PMC5997743 29895872.0 10.1038/s41598-018-27256-w l29ovsgr 0.483268 Trobaugh_2017, Haasnoot_2010, Taschuk_2020, Berkhout_2006 Zhang_2015
33 Lum_K_2016 Proteomic approaches to uncovering virus–host protein interactions during the progression of viral infection Lum, Krystal K; Cristea, Ileana M 2016 2016-03-01 None N PMC4919574 26817613.0 10.1586/14789450.2016.1147353 4xdw4303 0.482373 Trobaugh_2017, Berkhout_2006, Alcami_2000 Watanabe_2019, Zhou_2011, Zhang_2015, Durmuş_2017
34 Amaya_2014 Proteomic strategies for the discovery of novel diagnostic and therapeutic targets for infectious diseases Amaya, Moushimi; Baer, Alan; Voss, Kelsey; Campbell, Catherine; Mueller, Claudius; Bailey, Charles; Kehn Hall, Kylene; Petricoin, Emanuel; Narayanan, Aarthi 2014 2014-07-01 PMC N PMC7108530 24488789.0 10.1111/2049-632x.12150 qerm5cpo 0.478622 Berkhout_2006, Trobaugh_2017 Zheng_2012
35 Hyatt_1990 Virological applications of the grid-cell-culture technique Hyatt, Alex D.; Eaton, Bryan T. 1990 1990-12-31 PMC N 1966471.0 10.1016/0892-0354(90)90011-g qwgde9uu 0.466377 den_Boon_2010, Volmer_2010, Denison_2008, Trobaugh_2017
36 Munday_2010 Quantitative Proteomic Analysis of A549 Cells Infected with Human Respiratory Syncytial Virus Munday, Diane C.; Emmott, Edward; Surtees, Rebecca; Lardeau, Charles-Hugues; Wu, Weining; Duprex, W. Paul; Dove, Brian K.; Barr, John N.; Hiscox, Julian A. 2010 2010-07-20 NONCOMM N PMC2984239 20647383.0 10.1074/mcp.m110.001859 2zhaknbi 0.452801 Volmer_2010, Trobaugh_2017, Berkhout_2006, Haasnoot_2010, den_Boon_2010 Zhang_2015
37 Halder_2017 Review of computational methods for virus–host protein interaction prediction: a case study on novel Ebola–human interactions Halder, Anup Kumar; Dutta, Pritha; Kundu, Mahantapas; Basu, Subhadip; Nasipuri, Mita 2017 2017-09-26 PMC N PMC7109800 29028879.0 10.1093/bfgp/elx026 72vya0vu 0.449947 Berkhout_2006, Trobaugh_2017, Haasnoot_2010 Goodacre_2020, Han_L_2017, Durmuş_2017
38 Vogels_2011 Quantitative proteomic identification of host factors involved in the Salmonella typhimurium infection cycle Vogels, Mijke W.; van Balkom, Bas W. M.; Heck, Albert J. R.; de Haan, Cornelis A. M.; Rottier, Peter J. M.; Batenburg, Joseph J.; Kaloyanova, Dora V.; Helms, J. Bernd 2011 2011-10-28 PMC N PMC7167899 21919203.0 10.1002/pmic.201100224 ewe4k0m9 0.448630 Volmer_2010, Trobaugh_2017, Haasnoot_2010, Berkhout_2006
39 Galao_2007 Saccharomyces cerevisiae: a versatile eukaryotic system in virology Galao, Rui P; Scheller, Nicoletta; Alves-Rodrigues, Isabel; Breinig, Tanja; Meyerhans, Andreas; Díez, Juana 2007 2007-10-10 COMM-USE N PMC2148055 17927824.0 10.1186/1475-2859-6-32 ffn59sgf 0.426560 Berkhout_2006, Shi_J_2012, Taschuk_2020 Alves-Rodrigues_2006, Hughes_2012, Zhao_2017, Andréola_2012
40 Shoemaker_2019 CRISPR screening using an expanded toolkit of autophagy reporters identifies TMEM41B as a novel autophagy factor Shoemaker, Christopher J.; Huang, Tina Q.; Weir, Nicholas R.; Polyakov, Nicole J.; Schultz, Sebastian W.; Denic, Vladimir 2019 2019-04-01 COMM-USE N PMC6459555 30933966.0 10.1371/journal.pbio.2007044 5e5jn6j4 0.425858 Berkhout_2006, Haasnoot_2010, Dubois_2016, Hurley_2014, Levine_2015 Ding_2017
41 Han_L_2017 Human enterovirus 71 protein interaction network prompts antiviral drug repositioning Han, Lu; Li, Kang; Jin, Chaozhi; Wang, Jian; Li, Qingjun; Zhang, Qiling; Cheng, Qiyue; Yang, Jing; Bo, Xiaochen; Wang, Shengqi 2017 2017-02-21 COMM-USE N PMC5318855 28220872.0 10.1038/srep43143 f59c4idd 0.421565 Berkhout_2006, Trobaugh_2017, Haasnoot_2010, Shi_J_2012, Wilson_2012 Zhang_2015
42 Navratil_2008 VirHostNet: a knowledge base for the management and the analysis of proteome-wide virus–host interaction networks Navratil, Vincent; de Chassey, Benoît; Meyniel, Laurène; Delmotte, Stéphane; Gautier, Christian; André, Patrice; Lotteau, Vincent; Rabourdin-Combe, Chantal 2008 2008-11-04 NONCOMM N PMC2686459 18984613.0 10.1093/nar/gkn794 x5lbstyr 0.419301 Alcami_2000, Alcami_2000, Alcami_2000 Durmuş_2017, Goodacre_2020, Han_L_2017
43 Vogels_2011 Identification of host factors involved in coronavirus replication by quantitative proteomics analysis Vogels, Mijke W.; van Balkom, Bas W. M.; Kaloyanova, Dora V.; Batenburg, Joseph J.; Heck, Albert J.; Helms, J. Bernd; Rottier, Peter J. M.; de Haan, Cornelis A. M. 2011 2011-01-01 PMC N PMC7167679 21182195.0 10.1002/pmic.201000309 87go3nm7 0.418003 Volmer_2010, Trobaugh_2017, Berkhout_2006, den_Boon_2010
44 Roingeard_2012 Viral detection by electron microscopy: past, present and future Roingeard, Philippe 2012 2012-01-09 PMC N PMC7161876 18627353.0 10.1042/bc20070173 iknoqb4d 0.413839 Berkhout_2006, den_Boon_2010, Trobaugh_2017
45 Zhou_2011 Viral proteomics: The emerging cutting-edge of virus research Zhou, ShengTao; Liu, Rui; Zhao, Xia; Huang, CanHua; Wei, YuQuan 2011 2011-06-26 NONCOMM N PMC7089374 21706410.0 10.1007/s11427-011-4177-7 3ahamzjv 0.405188 Trobaugh_2017, Berkhout_2006, Herbert_2016, den_Boon_2010 Watanabe_2019, Zhang_2015
46 Yang_2014 Studying Coronavirus–Host Protein Interactions Yang, Chee-Hing; Li, Hui-Chun; Hung, Cheng-Huei; Lo, Shih-Yen 2014 2014-12-18 PMC N PMC7121234 25720482.0 10.1007/978-1-4939-2438-7_17 ebr8jy1e 0.396335 Berkhout_2006, Trobaugh_2017, den_Boon_2010 Zhang_2015, Popescu_2011
47 Gancarz_2011 Systematic Identification of Novel, Essential Host Genes Affecting Bromovirus RNA Replication Gancarz, Brandi L.; Hao, Linhui; He, Qiuling; Newton, Michael A.; Ahlquist, Paul 2011 2011-08-22 COMM-USE N PMC3161824 21915247.0 10.1371/journal.pone.0023988 39rbo0f9 0.386349 Trobaugh_2017, Yasuda-Inoue_2013, Berkhout_2006, Haasnoot_2010
48 Zhao_2011 Virus interactions with human signal transduction pathways Zhao, Zhongming; Xia, Junfeng; Tastan, Oznur; Singh, Irtisha; Kshirsagar, Meghana; Carbonell, Jaime; Klein-Seetharaman, Judith 2011 2011-01-01 PMC N PMC3407688 21330695.0 10.1504/ijcbdd.2011.038658 titmz5jo 0.376550 Berkhout_2006, Haasnoot_2010, Trobaugh_2017 Durmuş_2017, Zhang_2015, Chemudupati_2019, Kumar_2018
49 Coiras_2008 Application of proteomics technology for analyzing the interactions between host cells and intracellular infectious agents Coiras, Mayte; Camafeita, Emilio; López‐Huertas, María Rosa; Calvo, Enrique; López, Juan Antonio; Alcamí, José 2008 2008-02-22 PMC N PMC7167661 18297655.0 10.1002/pmic.200700664 4ib12gnc 0.375115 Berkhout_2006, Shi_J_2012, Viswanathan_2010, Kim_S_2018
50 Kong_2015 Interactions among SARS-CoV accessory proteins revealed by bimolecular fluorescence complementation assay Kong, Jianqiang; Shi, Yanwei; Wang, Zhifang; Pan, Yiting 2015 2015-06-06 None N PMC4629423 26579480.0 10.1016/j.apsb.2015.05.002 dc1rufc4 0.373763 Volmer_2010, Bansal_2020, Berkhout_2006 Zhang_2015
51 von_Brunn_2007 Analysis of Intraviral Protein-Protein Interactions of the SARS Coronavirus ORFeome von Brunn, Albrecht; Teepe, Carola; Simpson, Jeremy C.; Pepperkok, Rainer; Friedel, Caroline C.; Zimmer, Ralf; Roberts, Rhonda; Baric, Ralph; Haas, Jürgen 2007 2007-05-23 COMM-USE N PMC1868897 17520018.0 10.1371/journal.pone.0000459 dlmx12vt 0.362488 Yasuda-Inoue_2013, Trobaugh_2017, den_Boon_2010, Stork_2011, Volmer_2010 Zhang_2015
52 Besson_2019 Kinome-Wide RNA Interference Screening Identifies Mitogen-Activated Protein Kinases and Phosphatidylinositol Metabolism as Key Factors for Rabies Virus Infection Besson, Benoit; Kim, Seonhee; Kim, Taehee; Ko, Yoonae; Lee, Sangchul; Larrous, Florence; Song, Jihwan; Shum, David; Grailhe, Regis; Bourhy, Hervé 2019 2019-05-22 COMM-USE N PMC6531879 31118297.0 10.1128/msphere.00047-19 rbhr1qso 0.362317 Berkhout_2006, Trobaugh_2017, Haasnoot_2010 Li_Z_2009
53 Sun_Y_2015 iTRAQ‐based quantitative subcellular proteomic analysis of Avibirnavirus‐infected cells Sun, Yanting; Hu, Boli; Fan, Chengfei; Jia, Lu; Zhang, Yina; Du, Aifang; Zheng, Xiaojuan; Zhou, Jiyong 2015 2015-06-17 PMC N PMC7163642 25929241.0 10.1002/elps.201500014 sgswo5s4 0.361978 Trobaugh_2017, Volmer_2010, Herbert_2016
54 Leroy_2016 Structural Proteomics of Herpesviruses Leroy, Baptiste; Gillet, Laurent; Vanderplasschen, Alain; Wattiez, Ruddy 2016 2016-02-12 COMM-USE N PMC4776205 26907323.0 10.3390/v8020050 fuotxqab 0.361932 Cullen_2009 Zhang_2015, Watanabe_2019
55 Li_J_2020 Virus-host interactome and proteomic survey of PMBCs from COVID-19 patients reveal potential virulence factors influencing SARS-CoV-2 pathogenesis Jingjiao Li; Mingquan Guo; Xiaoxu Tian; Chengrong Liu; Xin Wang; Xing Yang; Ping Wu; Zixuan Xiao; Yafei Qu; Yue Yin; Joyce Fu; Zhaoqin Zhu; Zhenshan Liu; Chao Peng; Tongyu Zhu; Qiming Liang 2020 2020-04-02 BioRxiv Y 10.1101/2020.03.31.019216 zbp8jzbe 0.353923 Berkhout_2006, Trobaugh_2017, Shi_J_2012, Haasnoot_2010
56 Zheng_2012 Current Approaches on Viral Infection: Proteomics and Functional Validations Zheng, Jie; Tan, Boon Huan; Sugrue, Richard; Tang, Kai 2012 2012-11-16 COMM-USE N PMC3499792 23162545.0 10.3389/fmicb.2012.00393 1grbdlib 0.352003 Berkhout_2006, Trobaugh_2017, Shi_J_2012, Haasnoot_2010 Watanabe_2019, Zhou_2011
57 Shiek_2020 Interplay of host regulatory network on SARS-CoV-2 binding and replication machinery Ahmed Shiek; Prabu Paramasivam; Kamal Raj; Vishal Kumar 2020 2020-04-20 BioRxiv Y 10.1101/2020.04.20.050138 vb53bih9 0.350059 Trobaugh_2017, Berkhout_2006, Haasnoot_2010, Shi_J_2012, Abernathy_2015
58 PUMFERY_2008 Chapter 15 Proteomics of viruses PUMFERY, ANNE; BERRO, REEM; KASHANCHI, FATAH 2008 2008-12-31 PMC N PMC7151880 10.1016/b978-044451980-1.50017-3 9dyh8bj2 0.342216 Trobaugh_2017, Berkhout_2006, Haasnoot_2010 Zhang_2015
59 Beard_2014 A Loss of Function Analysis of Host Factors Influencing Vaccinia virus Replication by RNA Interference Beard, Philippa M.; Griffiths, Samantha J.; Gonzalez, Orland; Haga, Ismar R.; Pechenick Jowers, Tali; Reynolds, Danielle K.; Wildenhain, Jan; Tekotte, Hille; Auer, Manfred; Tyers, Mike; Ghazal, Peter; Zimmer, Ralf; Haas, Jürgen 2014 2014-06-05 COMM-USE N PMC4047015 24901222.0 10.1371/journal.pone.0098431 si8btsab 0.342192 Trobaugh_2017, Berkhout_2006, den_Boon_2010, Haasnoot_2010 Yan_J_2020
60 Ma-Lauer_2012 Virus–host interactomes — antiviral drug discovery Ma-Lauer, Yue; Lei, Jian; Hilgenfeld, Rolf; von Brunn, Albrecht 2012 2012-10-31 PMC N PMC7102765 23057872.0 10.1016/j.coviro.2012.09.003 z5axksvp 0.340935 Berkhout_2006, Trobaugh_2017, Haasnoot_2010, Shi_J_2012 Watanabe_2019, Durmuş_2017, Chemudupati_2019
61 Bansal_2020 An interaction network of RNA-binding proteins involved in Drosophila oogenesis Prashali Bansal; Johannes Madlung; Kristina Schaaf; Boris Macek; Fulvia Bono 2020 2020-01-09 BioRxiv N 10.1101/2020.01.08.899146 2f9nc2to 0.339121 Trobaugh_2017, Haasnoot_2010, Dubois_2016 Zhang_2015, Järvelin_2016, Li_Z_2009
62 Santoro_2009 Role of Heat Shock Proteins in Viral Infection Santoro, M. Gabriella; Amici, Carla; Rossi, Antonio 2009 2009-10-24 PMC N PMC7121897 10.1007/978-90-481-2976-8_3 mth4aebn 0.336422 Trobaugh_2017, Berkhout_2006, Volmer_2010 Sun_D_2016
63 Cook_2019 Location is everything: protein translocations as a viral infection strategy Cook, Katelyn C; Cristea, Ileana M 2019 2019-02-28 PMC N PMC6382524 30339987.0 10.1016/j.cbpa.2018.09.021 ghjzmeww 0.332336 Trobaugh_2017, Berkhout_2006, Shi_J_2012, Kim_S_2018 Fulcher_2011, Zhang_2015, Grangeon_2012, Watanabe_2019
64 Li_Z_2009 Translation Elongation Factor 1A is a component of the tombusvirus replicase complex and affects the stability of the p33 replication co-factor Li, Zhenghe; Pogany, Judit; Panavas, Tadas; Xu, Kai; Esposito, Anthony M.; Kinzy, Terri Gross; Nagy, Peter D. 2009 2009-03-01 PMC N PMC2785496 19131084.0 10.1016/j.virol.2008.11.041 06qfbvlr 0.330732 Stork_2011, Yasuda-Inoue_2013, Li_Z_2010 Sasvari_2011, Li_Z_2010
65 Shaw_2008 Cellular Proteins in Influenza Virus Particles Shaw, Megan L.; Stone, Kathryn L.; Colangelo, Christopher M.; Gulcicek, Erol E.; Palese, Peter 2008 2008-06-06 COMM-USE N PMC2390764 18535660.0 10.1371/journal.ppat.1000085 f7eqdxpv 0.326409 Volmer_2010, den_Boon_2010, Trobaugh_2017 Zhang_2015, Wulan_2015
66 Lark_2018 Interactions of Alphavirus nsP3 Protein with Host Proteins Lark, Tyler; Keck, Forrest; Narayanan, Aarthi 2018 2018-01-09 COMM-USE N PMC5767282 29375517.0 10.3389/fmicb.2017.02652 8pee66k6 0.321749 den_Boon_2010, Volmer_2010, Taschuk_2020 Zhang_2015
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