| 1 |
Lecuit_2013 |
The human virome: new tools and concepts |
Lecuit, Marc; Eloit, Marc |
2013 |
2013-10-31 |
PMC |
N |
|
23906500.0 |
10.1016/j.tim.2013.07.001 |
enqf0gm4 |
0.925903 |
Francis_2016 |
|
| 2 |
Eden_2020 |
An emergent clade of SARS-CoV-2 linked to returned travellers from Iran |
Eden, John-Sebastian; Rockett, Rebecca; Carter, Ian; Rahman, Hossinur; de Ligt, Joep; Hadfield, James; Storey, Matthew; Ren, Xiaoyun; Tulloch, Rachel; Basile, Kerri; Wells, Jessica; Byun, Roy; Gilroy, Nicky; O’Sullivan, Matthew V; Sintchenko, Vitali; Chen, Sharon C; Maddocks, Susan; Sorrell, Tania C; Holmes, Edward C; Dwyer, Dominic E; Kok, Jen |
2020 |
2020-04-10 |
NONCOMM |
Y |
PMC7147362 |
32296544.0 |
10.1093/ve/veaa027 |
yac7kzaf |
0.925903 |
Eden_2020 |
|
| 3 |
Eden_2020 |
An emergent clade of SARS-CoV-2 linked to returned travellers from Iran |
John-Sebastian Eden; Rebecca Rockett; Ian Carter; Hossinur Rahman; Joep de Ligt; James Hadfield; Matthew Storey; Xiaoyun Ren; Rachel Tulloch; Kerri Basile; Jessica Wells; Roy Byun; Nicky Gilroy; Matthew V O’Sullivan; Vitali Sintchenko; Sharon C Chen; Susan Maddocks; Tania C Sorrell; Edward C Holmes; Dominic E Dwyer; Jen Kok |
2020 |
2020-03-17 |
BioRxiv |
Y |
|
|
10.1101/2020.03.15.992818 |
izkz1hz4 |
0.908504 |
Eden_2020 |
|
| 4 |
Xie_G_2013 |
New strategy for virus discovery: viruses identified in human feces in the last decade |
Xie, GuangCheng; Yu, JieMei; Duan, ZhaoJun |
2013 |
2013-08-07 |
COMM-USE |
N |
PMC7089042 |
23917840.0 |
10.1007/s11427-013-4516-y |
9i9dlx2y |
0.874237 |
|
|
| 5 |
Wylie_2012 |
Emerging view of the human virome |
Wylie, Kristine M.; Weinstock, George M.; Storch, Gregory A. |
2012 |
2012-10-31 |
PMC |
N |
PMC3701101 |
22683423.0 |
10.1016/j.trsl.2012.03.006 |
c1ribu7f |
0.860618 |
|
|
| 6 |
Mokili_2012 |
Metagenomics and future perspectives in virus discovery |
Mokili, John L; Rohwer, Forest; Dutilh, Bas E |
2012 |
2012-02-29 |
PMC |
N |
PMC7102772 |
22440968.0 |
10.1016/j.coviro.2011.12.004 |
x7jpsnxg |
0.795696 |
Grewelle_2020 |
Dacheux_2014 |
| 7 |
Haynes_2010 |
The Human Virome |
Haynes, Matthew; Rohwer, Forest |
2010 |
2010-10-11 |
PMC |
N |
PMC7122492 |
|
10.1007/978-1-4419-7089-3_4 |
2y146igt |
0.736025 |
|
|
| 8 |
Bexfield_2011 |
Metagenomics and the molecular identification of novel viruses |
Bexfield, Nicholas; Kellam, Paul |
2011 |
2011-11-30 |
PMC |
N |
PMC7110547 |
21111643.0 |
10.1016/j.tvjl.2010.10.014 |
bxu3sklz |
0.704141 |
Djikeng_2009 |
Dacheux_2014 |
| 9 |
Miller_2013 |
Metagenomics for pathogen detection in public health |
Miller, Ruth R; Montoya, Vincent; Gardy, Jennifer L; Patrick, David M; Tang, Patrick |
2013 |
2013-09-20 |
PMC |
N |
PMC3978900 |
24050114.0 |
10.1186/gm485 |
p2vuztsb |
0.694155 |
Djikeng_2009 |
Li_C_2020 |
| 10 |
Yadav_2013 |
Sequencing and Computational Approaches to Identification and Characterization of Microbial Organisms |
Yadav, Brijesh Singh; Ronda, Venkateswarlu; Vashista, Dinesh P; Sharma, Bhaskar |
2013 |
2013-05-20 |
PMC |
N |
PMC4147756 |
25288901.0 |
10.4137/becb.s10886 |
xrxttrh2 |
0.683176 |
Djikeng_2009, Smith_2013 |
Pokhriyal_2019, Shifman_2019 |
| 11 |
Wohl_2016 |
GENOMIC ANALYSIS OF VIRAL OUTBREAKS |
Wohl, Shirlee; Schaffner, Stephen F.; Sabeti, Pardis C. |
2016 |
2016-09-29 |
None |
N |
PMC5210220 |
27501264.0 |
10.1146/annurev-virology-110615-035747 |
m2iiswan |
0.674933 |
Djikeng_2009 |
|
| 12 |
Höper_2017 |
Chapter Two Loeffler 4.0: Diagnostic Metagenomics |
Höper, Dirk; Wylezich, Claudia; Beer, Martin |
2017 |
2017-12-31 |
PMC |
N |
PMC7112322 |
29029726.0 |
10.1016/bs.aivir.2017.08.001 |
oni76pna |
0.670115 |
Djikeng_2009 |
Alquezar-Planas_2013 |
| 13 |
Hjelmsø_2019 |
Metagenomic analysis of viruses in toilet waste from long distance flights—A new procedure for global infectious disease surveillance |
Hjelmsø, Mathis Hjort; Mollerup, Sarah; Jensen, Randi Holm; Pietroni, Carlotta; Lukjancenko, Oksana; Schultz, Anna Charlotte; Aarestrup, Frank M.; Hansen, Anders Johannes |
2019 |
2019-01-14 |
COMM-USE |
N |
PMC6331095 |
30640944.0 |
10.1371/journal.pone.0210368 |
fhqc0ty1 |
0.666069 |
|
Dacheux_2014, Kim_W_2016 |
| 14 |
Van_Borm_2014 |
Next-Generation Sequencing in Veterinary Medicine: How Can the Massive Amount of Information Arising from High-Throughput Technologies Improve Diagnosis, Control, and Management of Infectious Diseases? |
Van Borm, Steven; Belák, Sándor; Freimanis, Graham; Fusaro, Alice; Granberg, Fredrik; Höper, Dirk; King, Donald P.; Monne, Isabella; Orton, Richard; Rosseel, Toon |
2014 |
2014-08-11 |
PMC |
N |
PMC7123048 |
25399113.0 |
10.1007/978-1-4939-2004-4_30 |
4wlxbbh4 |
0.644997 |
Djikeng_2009, Yadav_2013 |
Shifman_2019 |
| 15 |
Fancello_2012 |
Computational tools for viral metagenomics and their application in clinical research |
Fancello, L.; Raoult, D.; Desnues, C. |
2012 |
2012-12-20 |
PMC |
N |
PMC7111993 |
23062738.0 |
10.1016/j.virol.2012.09.025 |
h9ryhpcv |
0.639463 |
Brister_2015, Djikeng_2009 |
Dacheux_2014 |
| 16 |
Ratra_2008 |
Functional genomics as a tool in virus research |
Ratra, Ruchi; Lal, Sunil K. |
2008 |
2008-06-01 |
PMC |
N |
PMC3450177 |
23100713.0 |
10.1007/s12088-008-0032-3 |
zaimorg0 |
0.627399 |
Smith_2013, Brister_2015 |
|
| 17 |
Stremlau_2015 |
Discovery of Novel Rhabdoviruses in the Blood of Healthy Individuals from West Africa |
Stremlau, Matthew H.; Andersen, Kristian G.; Folarin, Onikepe A.; Grove, Jessica N.; Odia, Ikponmwonsa; Ehiane, Philomena E.; Omoniwa, Omowunmi; Omoregie, Omigie; Jiang, Pan-Pan; Yozwiak, Nathan L.; Matranga, Christian B.; Yang, Xiao; Gire, Stephen K.; Winnicki, Sarah; Tariyal, Ridhi; Schaffner, Stephen F.; Okokhere, Peter O.; Okogbenin, Sylvanus; Akpede, George O.; Asogun, Danny A.; Agbonlahor, Dennis E.; Walker, Peter J.; Tesh, Robert B.; Levin, Joshua Z.; Garry, Robert F.; Sabeti, Pardis C.; Happi, Christian T. |
2015 |
2015-03-17 |
COMM-USE |
N |
PMC4363514 |
25781465.0 |
10.1371/journal.pntd.0003631 |
nqz3haqq |
0.625246 |
|
|
| 18 |
Postel_2016 |
The European Classical Swine Fever Virus Database: Blueprint for a Pathogen-Specific Sequence Database with Integrated Sequence Analysis Tools |
Postel, Alexander; Schmeiser, Stefanie; Zimmermann, Bernd; Becher, Paul |
2016 |
2016-11-07 |
COMM-USE |
N |
PMC5127016 |
27827988.0 |
10.3390/v8110302 |
w2sj3dns |
0.620147 |
Brister_2015, Cheng_2013, Djikeng_2009 |
|
| 19 |
Chiu_2019 |
Clinical metagenomics |
Chiu, Charles Y.; Miller, Steven A. |
2019 |
2019-03-27 |
PMC |
N |
PMC6858796 |
30918369.0 |
10.1038/s41576-019-0113-7 |
3fsegyme |
0.601912 |
|
Li_C_2020, Baldwin_2014 |
| 20 |
Mihalov-Kovács_2014 |
The fecal virome of domesticated animals |
Mihalov-Kovács, Eszter; Fehér, Enikő; Martella, Vito; Bányai, Krisztián; Farkas, Szilvia L. |
2014 |
2014-02-01 |
PMC |
N |
PMC4188178 |
25674581.0 |
10.1007/s13337-014-0192-1 |
k0fw3vr3 |
0.579686 |
|
Knutson_2017 |
| 21 |
Wylie_2013 |
Virome genomics: a tool for defining the human virome |
Wylie, Kristine M; Weinstock, George M; Storch, Gregory A |
2013 |
2013-08-31 |
PMC |
N |
PMC3755052 |
23706900.0 |
10.1016/j.mib.2013.04.006 |
084o1dmp |
0.577214 |
|
|
| 22 |
Scarpellini_2015 |
The human gut microbiota and virome: Potential therapeutic implications |
Scarpellini, Emidio; Ianiro, Gianluca; Attili, Fabia; Bassanelli, Chiara; De Santis, Adriano; Gasbarrini, Antonio |
2015 |
2015-12-31 |
PMC |
N |
|
26257129.0 |
10.1016/j.dld.2015.07.008 |
51s1u7gd |
0.572334 |
|
Li_H_2019 |
| 23 |
Chiu_2013 |
Viral pathogen discovery |
Chiu, Charles Y |
2013 |
2013-05-29 |
None |
N |
PMC5964995 |
23725672.0 |
10.1016/j.mib.2013.05.001 |
qv5r8a0l |
0.569306 |
Djikeng_2009 |
Li_C_2020 |
| 24 |
Kohl_2015 |
Protocol for Metagenomic Virus Detection in Clinical Specimens |
Kohl, Claudia; Brinkmann, Annika; Dabrowski, Piotr W.; Radonić, Aleksandar; Nitsche, Andreas; Kurth, Andreas |
2015 |
2015-01-23 |
None |
N |
PMC4285256 |
25532973.0 |
10.3201/eid2101.140766 |
gx9oexv8 |
0.555025 |
Djikeng_2009, Mizutani_2007 |
|
| 25 |
Monaco_2018 |
Deconvoluting Virome-Wide Antiviral Antibody Profiling Data |
Daniel R. Monaco; Sanjay V. Kottapalli; Tiezheng Yuan; Florian P. Breitwieser; Danielle E. Anderson; Limin Wijaya; Kevin Tan; Wan Ni Chia; Kai Kammers; Mario Caturegli; Kathleen Waugh; Marian Rewers; Lin-Fa Wang; H. Benjamin Larman |
2018 |
2018-05-30 |
BioRxiv |
N |
|
|
10.1101/333625 |
pc4je19g |
0.550345 |
Chang_2011 |
|
| 26 |
Soueidan_2015 |
Finding and identifying the viral needle in the metagenomic haystack: trends and challenges |
Soueidan, Hayssam; Schmitt, Louise-Amélie; Candresse, Thierry; Nikolski, Macha |
2015 |
2015-01-07 |
COMM-USE |
N |
PMC4285800 |
25610431.0 |
10.3389/fmicb.2014.00739 |
bkreu1s2 |
0.547095 |
|
Dacheux_2014 |
| 27 |
Delwart_2012 |
Animal virus discovery: improving animal health, understanding zoonoses, and opportunities for vaccine development |
Delwart, Eric |
2012 |
2012-06-30 |
None |
N |
PMC3378828 |
22463981.0 |
10.1016/j.coviro.2012.02.012 |
dz6ez5mw |
0.547095 |
|
|
| 28 |
Li_L_2011 |
From orphan virus to pathogen: the path to the clinical lab |
Li, Linlin; Delwart, Eric |
2011 |
2011-10-01 |
PMC |
N |
PMC3190133 |
22003378.0 |
10.1016/j.coviro.2011.07.006 |
9v0f1v8m |
0.537580 |
Grewelle_2020 |
|
| 29 |
Barzon_2011 |
Applications of Next-Generation Sequencing Technologies to Diagnostic Virology |
Barzon, Luisa; Lavezzo, Enrico; Militello, Valentina; Toppo, Stefano; Palù, Giorgio |
2011 |
2011-11-14 |
COMM-USE |
N |
PMC3233444 |
22174638.0 |
10.3390/ijms12117861 |
01nuj0lk |
0.535257 |
Djikeng_2009 |
Yang_2018 |
| 30 |
Zhang_2019 |
Identification of viruses with the potential to infect human |
Zheng Zhang; Zena Cai; Zhiying Tan; Congyu Lu; Gaihua Zhang; Yousong Peng |
2019 |
2019-04-05 |
BioRxiv |
N |
|
|
10.1101/597963 |
lnch3qsq |
0.534442 |
Lee_C_2017, Chang_2011, Smits_2014 |
|
| 31 |
Kumar_2017 |
Evolution of selective-sequencing approaches for virus discovery and virome analysis |
Kumar, Arvind; Murthy, Satyapramod; Kapoor, Amit |
2017 |
2017-07-15 |
PMC |
N |
PMC5819613 |
28583442.0 |
10.1016/j.virusres.2017.06.005 |
lrrkuist |
0.518568 |
Djikeng_2009, Siridechadilok_2013, Yadav_2013, Deng_2015 |
Jensen_2015 |
| 32 |
Maurano_2020 |
Sequencing analysis of the spread of SARS-CoV2 in the Greater New York City region |
Matthew T Maurano; Sitharam Ramaswami; Gael Westby; Paul Zappile; Dacia Dimartino; Guomiao Shen; Xiaojun Feng; Andre M Ribeiro-dos-Santos; Nicholas A Vulpescu; Margaret Black; Megan Hogan; Christian Marier; Peter Meyn; Yutong Zhang; John Cadley; Raquel Ordonez; Raven Luther; Emily Huang; Emily Guzman; Antonio Serrano; Brendan Belovarac; Tatyana Gindin; Andrew Lytle; Jared Pinnell; Theodore Vougiouklakis; Ludovic Boytard; John Chen; Lawrence H Lin; Amy Rapkiewicz; Vanessa Raabe; Marie I Samanovic-Golden; George Jour; Iman Osman; Maria Aguero-Rosenfeld; Mark J Mulligan; Paolo Cotzia; Matija Snuderl; Adriana Heguy |
2020 |
2020-04-21 |
BioRxiv |
Y |
|
|
10.1101/2020.04.15.20064931 |
wzxcrwea |
0.517710 |
Brister_2015 |
|
| 33 |
Zhang_2019 |
Rapid identification of human‐infecting viruses |
Zhang, Zheng; Cai, Zena; Tan, Zhiying; Lu, Congyu; Jiang, Taijiao; Zhang, Gaihua; Peng, Yousong |
2019 |
2019-08-12 |
PMC |
N |
PMC7168554 |
31373773.0 |
10.1111/tbed.13314 |
mpp3ctem |
0.494859 |
Chang_2011, Lee_C_2017, Brister_2015, Deng_2015, Smits_2014 |
|
| 34 |
Young_2016 |
Optimizing Viral Discovery in Bats |
Young, Cristin C. W.; Olival, Kevin J. |
2016 |
2016-02-11 |
COMM-USE |
N |
PMC4750870 |
26867024.0 |
10.1371/journal.pone.0149237 |
xrfxfpuv |
0.484739 |
Chang_2011 |
Dacheux_2014, Lee_D_2019 |
| 35 |
Pokhriyal_2019 |
Bioinformatics and Microarray-Based Technologies to Viral Genome Sequence Analysis |
Pokhriyal, Mayank; Ratta, Barkha; Yadav, Brijesh S. |
2019 |
2019-11-06 |
PMC |
N |
PMC7121691 |
|
10.1007/978-981-13-8739-5_6 |
ag3n4ecn |
0.484062 |
Djikeng_2009, Yadav_2013 |
Wang_2003, Wang_2010, Baldwin_2014 |
| 36 |
Fredricks_2005 |
The infectious aetiology of disease: the search for new agents |
Fredricks, David N; Relman, David A |
2005 |
2005-03-01 |
PMC |
N |
PMC7128253 |
|
10.1383/medc.33.3.37.61122 |
cisrvghj |
0.483365 |
Grewelle_2020 |
|
| 37 |
Vinatzer_2019 |
Cyberbiosecurity Challenges of Pathogen Genome Databases |
Vinatzer, Boris A.; Heath, Lenwood S.; Almohri, Hussain M. J.; Stulberg, Michael J.; Lowe, Christopher; Li, Song |
2019 |
2019-05-15 |
COMM-USE |
N |
PMC6529814 |
31157218.0 |
10.3389/fbioe.2019.00106 |
x6s34z1s |
0.464485 |
|
|
| 38 |
Smits_2015 |
Recovering full-length viral genomes from metagenomes |
Smits, Saskia L.; Bodewes, Rogier; Ruiz-González, Aritz; Baumgärtner, Wolfgang; Koopmans, Marion P.; Osterhaus, Albert D. M. E.; Schürch, Anita C. |
2015 |
2015-10-01 |
COMM-USE |
N |
PMC4589665 |
26483782.0 |
10.3389/fmicb.2015.01069 |
tybes52g |
0.458980 |
Lee_C_2017, Chang_2011, Deng_2015, Smits_2014, Brister_2015 |
Li_C_2020 |
| 39 |
Djikeng_2009 |
Advancing full length genome sequencing for human RNA viral pathogens |
Djikeng, Appolinaire; Spiro, David |
2009 |
2009-01-01 |
PMC |
N |
PMC2638583 |
19884976.0 |
10.2217/17460794.4.1.47 |
uvm72cpi |
0.454543 |
Smith_2013 |
Viehweger_2019 |
| 40 |
Manning_2020 |
Rapid metagenomic characterization of a case of imported COVID-19 in Cambodia |
Jessica E. Manning; Jennifer A. Bohl; Sreyngim Lay; Sophana Chea; Ly Sovann; Yi Sengdoeurn; Seng Heng; Chan Vuthy; Katrina Kalantar; Vida Ahyong; Michelle Tan; Jonathan Sheu; Cristina M. Tato; Joseph L. DeRisi; Laurence Baril; Veasna Duong; Philippe Dussart; Erik A. Karlsson |
2020 |
2020-03-05 |
BioRxiv |
N |
|
|
10.1101/2020.03.02.968818 |
fu3cl7lq |
0.446883 |
Djikeng_2009 |
Knutson_2017 |
| 41 |
WILUSZ_2005 |
CHAPTER 3 The Fundamentals of Human Virology |
WILUSZ, JEFFREY |
2005 |
2005-12-31 |
PMC |
N |
|
|
10.1016/b978-012088483-4/50006-8 |
3mfighm4 |
0.441754 |
|
|
| 42 |
González-Candelas_2018 |
Population Genomics of Human Viruses |
González-Candelas, Fernando; Patiño-Galindo, Juan Ángel; Valiente-Mullor, Carlos |
2018 |
2018-06-04 |
PMC |
N |
PMC7123750 |
|
10.1007/13836_2018_31 |
8g8ppdxg |
0.423712 |
Grewelle_2020 |
|
| 43 |
Katsura_2019 |
Evolutionary Medicine of Retroviruses in the Human Genome |
Katsura, Yukako; Asai, Satoshi |
2019 |
2019-12-31 |
PMC |
N |
PMC7093845 |
31813465.0 |
10.1016/j.amjms.2019.09.007 |
p1lpa4fu |
0.409725 |
|
|
| 44 |
Xiao_2020 |
Multiple approaches for massively parallel sequencing of HCoV-19 (SARS-CoV-2) genomes directly from clinical samples |
Minfeng Xiao; Xiaoqing Liu; Jingkai Ji; Min Li; Jiandong Li; Lin Yang; Wanying Sun; Peidi Ren; Guifang Yang; Jincun Zhao; Tianzhu Liang; Huahui Ren; Tian Chen; Huanzi Zhong; Wenchen Song; Yanqun Wang; Ziqing Deng; Yanping Zhao; Zhihua Ou; Daxi Wang; Jielun Cai; Xinyi Cheng; Taiqing Feng; Honglong Wu; Yanping Gong; Huanming Yang; Jian Wang; Xun Xu; Shida Zhu; Fang Chen; Yanyan Zhang; Weijun Chen; Yimin Li; Junhua Li |
2020 |
2020-03-17 |
BioRxiv |
N |
|
|
10.1101/2020.03.16.993584 |
wbyqmvhs |
0.402737 |
Chang_2011, Lee_C_2017, Harel_2019, Djikeng_2009 |
Alquezar-Planas_2013 |
| 45 |
Roux_2019 |
Metagenomics in Virology |
Roux, Simon; Matthijnssens, Jelle; Dutilh, Bas E. |
2019 |
2019-12-31 |
PMC |
N |
PMC7157462 |
|
10.1016/b978-0-12-809633-8.20957-6 |
1qj9ri18 |
0.400365 |
Djikeng_2009 |
Li_C_2020, Dacheux_2014 |
| 46 |
Dudas_2019 |
The ability of single genes vs full genomes to resolve time and space in outbreak analysis |
Dudas, Gytis; Bedford, Trevor |
2019 |
2019-12-26 |
COMM-USE |
N |
PMC6933756 |
31878875.0 |
10.1186/s12862-019-1567-0 |
aupjlpfm |
0.391202 |
Chang_2011, Brister_2015, Harel_2019, Deng_2015, Cheng_2013 |
Wang_2010 |
| 47 |
Ducatez_2014 |
Identification of a Novel Coronavirus from Guinea Fowl Using Metagenomics |
Ducatez, Mariette F.; Guérin, Jean-Luc |
2014 |
2014-12-18 |
PMC |
N |
PMC7120858 |
25720467.0 |
10.1007/978-1-4939-2438-7_2 |
9iailgv0 |
0.390975 |
Djikeng_2009, Siridechadilok_2013 |
|
| 48 |
Osunmakinde_2018 |
Overview of Trends in the Application of Metagenomic Techniques in the Analysis of Human Enteric Viral Diversity in Africa’s Environmental Regimes |
Osunmakinde, Cecilia Oluseyi; Selvarajan, Ramganesh; Sibanda, Timothy; Mamba, Bhekie B; Msagati, Titus A.M |
2018 |
2018-08-14 |
COMM-USE |
N |
PMC6115975 |
30110939.0 |
10.3390/v10080429 |
ea9mzk6e |
0.387841 |
Djikeng_2009, Roux_2019 |
Dacheux_2014 |
| 49 |
Rose_2015 |
Challenges of the Unknown: Clinical Application of Microbial Metagenomics |
Rose, Graham; Wooldridge, David J.; Anscombe, Catherine; Mee, Edward T.; Misra, Raju V.; Gharbia, Saheer |
2015 |
2015-09-14 |
COMM-USE |
N |
PMC4584244 |
26451363.0 |
10.1155/2015/292950 |
n92j9y0j |
0.384896 |
Gamermann_2014, Djikeng_2009, Brister_2015, Deng_2015, Roux_2019 |
Li_C_2020, Miller_2013, Baldwin_2014 |
| 50 |
Cottam_2009 |
Full Sequencing of Viral Genomes: Practical Strategies Used for the Amplification and Characterization of Foot-and-Mouth Disease Virus |
Cottam, Eleanor M.; Wadsworth, Jemma; Knowles, Nick J.; King, Donald P. |
2009 |
2009-03-16 |
PMC |
N |
PMC7122775 |
19521878.0 |
10.1007/978-1-60327-999-4_17 |
a5myh752 |
0.384174 |
Djikeng_2009, Chang_2011, Brister_2015 |
|
| 51 |
Mirvish_2016 |
Strategies for Human Tumor Virus Discoveries: From Microscopic Observation to Digital Transcriptome Subtraction |
Mirvish, Ezra D.; Shuda, Masahiro |
2016 |
2016-05-13 |
COMM-USE |
N |
PMC4865503 |
27242703.0 |
10.3389/fmicb.2016.00676 |
e8cihwn1 |
0.382685 |
Djikeng_2009, Cheng_2013 |
|
| 52 |
Ganova-Raeva_2013 |
Application of mass spectrometry to molecular diagnostics of viral infections |
Ganova-Raeva, Lilia M; Khudyakov, Yury E |
2013 |
2013-05-01 |
PMC |
N |
PMC5831079 |
23638820.0 |
10.1586/erm.13.24 |
qh2kuzdc |
0.367350 |
Djikeng_2009, Yadav_2013 |
Camarasa_2018 |
| 53 |
Georgiev_2009 |
Genomic and Postgenomic Research |
Georgiev, Vassil St. |
2009 |
2009-01-01 |
PMC |
N |
PMC7122628 |
|
10.1007/978-1-60327-297-1_25 |
vmtjc8ct |
0.349974 |
Cheng_2013, O'Leary_2016 |
|
| 54 |
Priest_2012 |
From genotype to phenotype: can systems biology be used to predict Staphylococcus aureus virulence? |
Priest, Nicholas K.; Rudkin, Justine K.; Feil, Edward J.; van den Elsen, Jean M. H.; Cheung, Ambrose; Peacock, Sharon J.; Laabei, Maisem; Lucks, David A.; Recker, Mario; Massey, Ruth C. |
2012 |
2012-10-16 |
PMC |
N |
PMC7097209 |
23070558.0 |
10.1038/nrmicro2880 |
l40dlb5d |
0.347967 |
Chang_2011, Brister_2015, Francis_2016 |
|
| 55 |
Shi_M_2018 |
Meta-transcriptomics and the evolutionary biology of RNA viruses |
Shi, Mang; Zhang, Yong-Zhen; Holmes, Edward C. |
2018 |
2018-01-02 |
PMC |
N |
PMC7127328 |
29111455.0 |
10.1016/j.virusres.2017.10.016 |
5qri915n |
0.345273 |
Siridechadilok_2013, Chang_2011, Grewelle_2020 |
|
| 56 |
Tithi_2018 |
FastViromeExplorer: a pipeline for virus and phage identification and abundance profiling in metagenomics data |
Tithi, Saima Sultana; Aylward, Frank O.; Jensen, Roderick V.; Zhang, Liqing |
2018 |
2018-01-12 |
COMM-USE |
N |
PMC5768174 |
29340239.0 |
10.7717/peerj.4227 |
sjl8x1jt |
0.345110 |
Deng_2015, Cheng_2013, Chang_2011 |
Tithi_2017, Li_C_2020, Dacheux_2014 |
| 57 |
Zhang_2018 |
The diversity, evolution and origins of vertebrate RNA viruses |
Zhang, Yong-Zhen; Wu, Wei-Chen; Shi, Mang; Holmes, Edward C |
2018 |
2018-08-31 |
PMC |
N |
PMC7102767 |
30114593.0 |
10.1016/j.coviro.2018.07.017 |
ndt8f812 |
0.338187 |
|
|
| 58 |
Warwick-Dugdale_2019 |
Long-read viral metagenomics captures abundant and microdiverse viral populations and their niche-defining genomic islands |
Warwick-Dugdale, Joanna; Solonenko, Natalie; Moore, Karen; Chittick, Lauren; Gregory, Ann C.; Allen, Michael J.; Sullivan, Matthew B.; Temperton, Ben |
2019 |
2019-04-25 |
COMM-USE |
N |
PMC6487183 |
31086738.0 |
10.7717/peerj.6800 |
8pr5ispb |
0.335510 |
Deng_2015, Cheng_2013, Brister_2015, Chang_2011, Djikeng_2009 |
|
| 59 |
Hall_2014 |
Evaluation of rapid and simple techniques for the enrichment of viruses prior to metagenomic virus discovery |
Hall, Richard J.; Wang, Jing; Todd, Angela K.; Bissielo, Ange B.; Yen, Seiha; Strydom, Hugo; Moore, Nicole E.; Ren, Xiaoyun; Huang, Q. Sue; Carter, Philip E.; Peacey, Matthew |
2014 |
2014-01-31 |
PMC |
N |
PMC7113663 |
24036074.0 |
10.1016/j.jviromet.2013.08.035 |
n6xp5mlz |
0.335439 |
Chang_2011, Siridechadilok_2013, Lee_C_2017 |
Lewandowska_2017, Dacheux_2014, Shifman_2019 |
| 60 |
Han_L_2015 |
Inferring Infection Patterns Based on a Connectivity Map of Host Transcriptional Responses |
Han, Lu; He, Haochen; Li, Fei; Cui, Xiuliang; Xie, Dafei; Liu, Yang; Zheng, Xiaofei; Bai, Hui; Wang, Shengqi; Bo, Xiaochen |
2015 |
2015-10-28 |
COMM-USE |
N |
PMC4623713 |
26508266.0 |
10.1038/srep15820 |
jgwvjkbj |
0.333730 |
Gamermann_2014, Chang_2011 |
|
| 61 |
Naccache_2014 |
A cloud-compatible bioinformatics pipeline for ultrarapid pathogen identification from next-generation sequencing of clinical samples |
Naccache, Samia N.; Federman, Scot; Veeraraghavan, Narayanan; Zaharia, Matei; Lee, Deanna; Samayoa, Erik; Bouquet, Jerome; Greninger, Alexander L.; Luk, Ka-Cheung; Enge, Barryett; Wadford, Debra A.; Messenger, Sharon L.; Genrich, Gillian L.; Pellegrino, Kristen; Grard, Gilda; Leroy, Eric; Schneider, Bradley S.; Fair, Joseph N.; Martínez, Miguel A.; Isa, Pavel; Crump, John A.; DeRisi, Joseph L.; Sittler, Taylor; Hackett, John; Miller, Steve; Chiu, Charles Y. |
2014 |
2014-06-04 |
None |
N |
PMC4079973 |
24899342.0 |
10.1101/gr.171934.113 |
tg52towp |
0.333722 |
Deng_2015, Djikeng_2009, Cheng_2013, Manning_2020, Brister_2015 |
Tausch_2018, Li_C_2020, Lewandowski_2019 |
| 62 |
Niimi_2014 |
Virus purification and enrichment by hydroxyapatite chromatography on a chip |
Niimi, Miyako; Masuda, Taisuke; Kaihatsu, Kunihiro; Kato, Nobuo; Nakamura, Shota; Nakaya, Takaaki; Arai, Fumihito |
2014 |
2014-10-01 |
PMC |
N |
PMC7111472 |
|
10.1016/j.snb.2014.04.011 |
wph0lnzk |
0.313542 |
Djikeng_2009, Siridechadilok_2013, Mizutani_2007 |
|
| 63 |
Baldwin_2014 |
Metagenomic Assay for Identification of Microbial Pathogens in Tumor Tissues |
Baldwin, Don A.; Feldman, Michael; Alwine, James C.; Robertson, Erle S. |
2014 |
2014-09-16 |
NONCOMM |
N |
PMC4172075 |
25227467.0 |
10.1128/mbio.01714-14 |
xlqdn0c7 |
0.311493 |
Djikeng_2009, Chen_2018, Harel_2019 |
Li_C_2020 |
| 64 |
Kim_W_2016 |
Phylogeographic analysis of hemorrhagic fever with renal syndrome patients using multiplex PCR-based next generation sequencing |
Kim, Won-Keun; Kim, Jeong-Ah; Song, Dong Hyun; Lee, Daesang; Kim, Yong Chul; Lee, Sook-Young; Lee, Seung-Ho; No, Jin Sun; Kim, Ji Hye; Kho, Jeong Hoon; Gu, Se Hun; Jeong, Seong Tae; Wiley, Michael; Kim, Heung-Chul; Klein, Terry A.; Palacios, Gustavo; Song, Jin-Won |
2016 |
2016-05-25 |
COMM-USE |
N |
PMC4879520 |
27221218.0 |
10.1038/srep26017 |
zm38v6do |
0.308176 |
|
|
| 65 |
Kwok_2020 |
Virus Metagenomics in Farm Animals: A Systematic Review |
Kwok, Kirsty T. T.; Nieuwenhuijse, David F.; Phan, My V. T.; Koopmans, Marion P. G. |
2020 |
2020-01-16 |
None |
N |
PMC7019290 |
31963174.0 |
10.3390/v12010107 |
47e37xl0 |
0.305239 |
|
Dacheux_2014 |
| 66 |
Smeele_2018 |
Viruses associated with Antarctic wildlife: From serology based detection to identification of genomes using high throughput sequencing |
Smeele, Zoe E.; Ainley, David G.; Varsani, Arvind |
2018 |
2018-01-02 |
PMC |
N |
PMC7114543 |
29111456.0 |
10.1016/j.virusres.2017.10.017 |
jq3w0pnj |
0.305116 |
|
|
| 67 |
Greninger_2018 |
A decade of RNA virus metagenomics is (not) enough |
Greninger, Alexander L. |
2018 |
2018-01-15 |
PMC |
N |
PMC7114529 |
29055712.0 |
10.1016/j.virusres.2017.10.014 |
048xo7jn |
0.301852 |
|
Shi_M_2018 |