| 1 |
Khan_2008 |
Bayesian, Maximum Parsimony and UPGMA Models for Inferring the Phylogenies of Antelopes Using Mitochondrial Markers |
Khan, Haseeb A.; Arif, Ibrahim A.; Bahkali, Ali H.; Al Farhan, Ahmad H.; Al Homaidan, Ali A. |
2008 |
2008-10-06 |
COMM-USE |
N |
PMC2614192 |
19204824.0 |
|
r97x0paz |
0.950152 |
Chang_2011 |
|
| 2 |
Gamermann_2014 |
New Approach for Phylogenetic Tree Recovery Based on Genome-Scale Metabolic Networks |
Gamermann, Daniel; Montagud, Arnaud; Conejero, J. Alberto; Urchueguía, Javier F.; de Córdoba, Pedro Fernández |
2014 |
2014-07-01 |
PMC |
N |
PMC4082356 |
24611553.0 |
10.1089/cmb.2013.0150 |
qlwc8g2s |
0.590345 |
Chang_2011 |
Zhang_2017, Francis_2016 |
| 3 |
Ai_Y_2013 |
GenomeFingerprinter: The Genome Fingerprint and the Universal Genome Fingerprint Analysis for Systematic Comparative Genomics |
Ai, Yuncan; Ai, Hannan; Meng, Fanmei; Zhao, Lei |
2013 |
2013-10-29 |
COMM-USE |
N |
PMC3812135 |
24205026.0 |
10.1371/journal.pone.0077912 |
b8jlvkg7 |
0.539728 |
Chang_2011, Cheng_2013 |
Cheng_2013, Phillippy_2009 |
| 4 |
Cheng_2013 |
CGAP: a new comprehensive platform for the comparative analysis of chloroplast genomes |
Cheng, Jinkui; Zeng, Xu; Ren, Guomin; Liu, Zhihua |
2013 |
2013-03-14 |
COMM-USE |
N |
PMC3636126 |
23496817.0 |
10.1186/1471-2105-14-95 |
tg06vxza |
0.535091 |
O'Leary_2016 |
Wang_2010, Francis_2016, Yu_Z_2010 |
| 5 |
Yu_Z_2010 |
Whole-proteome phylogeny of large dsDNA viruses and parvoviruses through a composition vector method related to dynamical language model |
Yu, Zu-Guo; Chu, Ka Hou; Li, Chi Pang; Anh, Vo; Zhou, Li-Qian; Wang, Roger Wei |
2010 |
2010-06-22 |
COMM-USE |
N |
PMC2898692 |
20565983.0 |
10.1186/1471-2148-10-192 |
gf718lbl |
0.519854 |
Chang_2011, Lee_C_2017, Cheng_2013 |
|
| 6 |
Kraberger_2019 |
Novel smacoviruses identified in the faeces of two wild felids: North American bobcat and African lion |
Kraberger, Simona; Serieys, Laurel; Fountain-Jones, Nicolas; Packer, Craig; Riley, Seth; Varsani, Arvind |
2019 |
2019-06-22 |
PMC |
N |
PMC7086625 |
31240485.0 |
10.1007/s00705-019-04329-3 |
4ipimv1a |
0.469701 |
|
Lee_D_2019 |
| 7 |
Scheuch_2015 |
RIEMS: a software pipeline for sensitive and comprehensive taxonomic classification of reads from metagenomics datasets |
Scheuch, Matthias; Höper, Dirk; Beer, Martin |
2015 |
2015-03-03 |
COMM-USE |
N |
PMC4351923 |
25886935.0 |
10.1186/s12859-015-0503-6 |
p6075gva |
0.421312 |
Cheng_2013 |
Twin_2013, Shcherbina_2016, Morfopoulou_2015, Morfopoulou_2014 |
| 8 |
Kilianski_2015 |
Pathosphere.org: pathogen detection and characterization through a web-based, open source informatics platform |
Kilianski, Andy; Carcel, Patrick; Yao, Shijie; Roth, Pierce; Schulte, Josh; Donarum, Greg B.; Fochler, Ed T.; Hill, Jessica M.; Liem, Alvin T.; Wiley, Michael R.; Ladner, Jason T.; Pfeffer, Bradley P.; Elliot, Oliver; Petrosov, Alexandra; Jima, Dereje D.; Vallard, Tyghe G.; Melendrez, Melanie C.; Skowronski, Evan; Quan, Phenix-Lan; Lipkin, W. Ian; Gibbons, Henry S.; Hirschberg, David L.; Palacios, Gustavo F.; Rosenzweig, C. Nicole |
2015 |
2015-12-29 |
COMM-USE |
N |
PMC4696252 |
26714571.0 |
10.1186/s12859-015-0840-5 |
9d6pqx19 |
0.417401 |
Cheng_2013 |
Tausch_2018 |
| 9 |
Wei_C_2011 |
Identification and Typing of Human Enterovirus: A Genomic Barcode Approach |
Wei, Chengguo; Wang, Guoqing; Chen, Xin; Huang, Honglan; Liu, Bin; Xu, Ying; Li, Fan |
2011 |
2011-10-14 |
COMM-USE |
N |
PMC3194813 |
22022592.0 |
10.1371/journal.pone.0026296 |
qkymwvwb |
0.383890 |
Chang_2011, Lee_C_2017 |
|
| 10 |
Zhang_2018 |
Metagenomic analysis of viral nucleic acid extraction methods in respiratory clinical samples |
Zhang, Dan; Lou, Xiuyu; Yan, Hao; Pan, Junhang; Mao, Haiyan; Tang, Hongfeng; Shu, Yan; Zhao, Yun; Liu, Lei; Li, Junping; Chen, Jiang; Zhang, Yanjun; Ma, Xuejun |
2018 |
2018-10-25 |
COMM-USE |
N |
PMC6202819 |
30359242.0 |
10.1186/s12864-018-5152-5 |
1vo72gop |
0.374408 |
Chen_2018 |
|
| 11 |
Zuo_G_2015 |
CVTree3 Web Server for Whole-genome-based and Alignment-free Prokaryotic Phylogeny and Taxonomy |
Zuo, Guanghong; Hao, Bailin |
2015 |
2015-11-10 |
None |
N |
PMC4678791 |
26563468.0 |
10.1016/j.gpb.2015.08.004 |
qutbqcwb |
0.363120 |
Chang_2011, Cheng_2013, Lee_C_2017 |
Yu_Z_2010 |
| 12 |
van_Hemert_2018 |
Euclidean Distance Analysis Enables Nucleotide Skew Analysis in Viral Genomes |
van Hemert, Formijn; Jebbink, Maarten; van der Ark, Andries; Scholer, Frits; Berkhout, Ben |
2018 |
2018-10-30 |
COMM-USE |
N |
PMC6232797 |
30510593.0 |
10.1155/2018/6490647 |
fl5tybzb |
0.354983 |
Chang_2011, Lee_C_2017 |
|
| 13 |
Sintchenko_2007 |
Pathogen profiling for disease management and surveillance |
Sintchenko, Vitali; Iredell, Jonathan R.; Gilbert, Gwendolyn L. |
2007 |
2007-05-08 |
PMC |
N |
PMC7097369 |
17487146.0 |
10.1038/nrmicro1656 |
71o58gcq |
0.350878 |
|
Miller_2013 |
| 14 |
Takano_2018 |
Novel single-stranded, circular DNA virus identified in cats in Japan |
Takano, Tomomi; Yanai, Yoshitomo; Hiramatsu, Kanae; Doki, Tomoyoshi; Hohdatsu, Tsutomu |
2018 |
2018-09-14 |
PMC |
N |
PMC7087140 |
30218220.0 |
10.1007/s00705-018-4020-6 |
h9smg0w9 |
0.326730 |
|
Lima_2015 |
| 15 |
Shepard_2016 |
Viral deep sequencing needs an adaptive approach: IRMA, the iterative refinement meta-assembler |
Shepard, Samuel S.; Meno, Sarah; Bahl, Justin; Wilson, Malania M.; Barnes, John; Neuhaus, Elizabeth |
2016 |
2016-09-05 |
COMM-USE |
N |
PMC5011931 |
27595578.0 |
10.1186/s12864-016-3030-6 |
xyru2q9o |
0.322907 |
Cheng_2013, Deng_2015, Lee_C_2017, Chang_2011 |
|
| 16 |
Wang_2018 |
The fecal virome of red-crowned cranes |
Wang, Yan; Yang, Shixing; Liu, Dawei; Zhou, Chenglin; Li, Wang; Lin, Yuan; Wang, Xiaochun; Shen, Quan; Wang, Hua; Li, Chuang; Zong, Minghui; Ding, Yuzhu; Song, Qianben; Deng, Xutao; Qi, Dunwu; Zhang, Wen; Delwart, Eric |
2018 |
2018-09-17 |
PMC |
N |
PMC7086969 |
30225519.0 |
10.1007/s00705-018-4037-x |
db45qdjl |
0.308670 |
|
|
| 17 |
Duraisamy_2018 |
Detection of novel RNA viruses from free-living gorillas, Republic of the Congo: genetic diversity of picobirnaviruses |
Duraisamy, Raja; Akiana, Jean; Davoust, Bernard; Mediannikov, Oleg; Michelle, Caroline; Robert, Catherine; Parra, Henri-Joseph; Raoult, Didier; Biagini, Philippe; Desnues, Christelle |
2018 |
2018-02-23 |
PMC |
N |
PMC7088520 |
29476397.0 |
10.1007/s11262-018-1543-6 |
4lsz69h6 |
0.307920 |
|
|