Topic 12 -- Abstracts with Biological Entities (English) - 75 Topics / Sub-Topic Model 37 - 15 Topics

cite ad title authors publish year publish time dataset abstract mentions covid pmcid pubmed id doi cord uid topic weight Similarity scispacy Similarity specter
1 Kriesel_2017 Enrichment of Retroviral Sequences in Brain Tissue from Patients with Severe Demyelinating Diseases Kriesel, JD; Bhetariya, PJ; Chan, BK; Wilson, T; Fischer, KF 2017 2017-07-16 COMM-USE N PMC5707126 29202119.0 jrlkp0pf 0.793080
2 Moreira_2012 Transcriptomics of In Vitro Immune-Stimulated Hemocytes from the Manila Clam Ruditapes philippinarum Using High-Throughput Sequencing Moreira, Rebeca; Balseiro, Pablo; Planas, Josep V.; Fuste, Berta; Beltran, Sergi; Novoa, Beatriz; Figueras, Antonio 2012 2012-04-19 COMM-USE N PMC3334963 22536348.0 10.1371/journal.pone.0035009 mkwpuav6 0.710708 Cheng_2013, Francis_2016, Deng_2015, Chang_2011
3 Tchitchek_2014 Sequencing, Annotation and Analysis of the Syrian Hamster (Mesocricetus auratus) Transcriptome Tchitchek, Nicolas; Safronetz, David; Rasmussen, Angela L.; Martens, Craig; Virtaneva, Kimmo; Porcella, Stephen F.; Feldmann, Heinz; Ebihara, Hideki; Katze, Michael G. 2014 2014-11-14 COMM-USE N PMC4232415 25398096.0 10.1371/journal.pone.0112617 4ueabl9p 0.691521 Cheng_2013, Francis_2016, Chang_2011
4 Kriesel_2012 Deep Sequencing for the Detection of Virus-Like Sequences in the Brains of Patients with Multiple Sclerosis: Detection of GBV-C in Human Brain Kriesel, John D.; Hobbs, Maurine R.; Jones, Brandt B.; Milash, Brett; Nagra, Rashed M.; Fischer, Kael F. 2012 2012-03-08 COMM-USE N PMC3297595 22412845.0 10.1371/journal.pone.0031886 liqhbqxl 0.659744 Langelier_2017 Kriesel_2017
5 Kang_2020 A chromosome-scale genome assembly of Isatis indigotica, an important medicinal plant used in traditional Chinese medicine: An Isatis genome Kang, Minghui; Wu, Haolin; Yang, Qiao; Huang, Li; Hu, Quanjun; Ma, Tao; Li, Zaiyun; Liu, Jianquan 2020 2020-02-01 COMM-USE N PMC6994597 32025321.0 10.1038/s41438-020-0240-5 cxrjzva4 0.646747 Francis_2016, Cheng_2013
6 Wang_2013 De novo Sequence Assembly and Characterization of Lycoris aurea Transcriptome Using GS FLX Titanium Platform of 454 Pyrosequencing Wang, Ren; Xu, Sheng; Jiang, Yumei; Jiang, Jingwei; Li, Xiaodan; Liang, Lijian; He, Jia; Peng, Feng; Xia, Bing 2013 2013-04-09 COMM-USE N PMC3621892 23593220.0 10.1371/journal.pone.0060449 cg463fbn 0.634111 Cheng_2013, Deng_2015, O'Leary_2016, Whiteford_2005
7 Wei_L_2014 Transcriptome Analysis of Houttuynia cordata Thunb. by Illumina Paired-End RNA Sequencing and SSR Marker Discovery Wei, Lin; Li, Shenghua; Liu, Shenggui; He, Anna; Wang, Dan; Wang, Jie; Tang, Yulian; Wu, Xianjin 2014 2014-01-02 COMM-USE N PMC3879290 24392108.0 10.1371/journal.pone.0084105 9z4qcoqz 0.604306 Cheng_2013, Whiteford_2005, Deng_2015
8 Rego_2012 Search for an aetiological virus candidate in chronic lymphocytic leukaemia by extensive transcriptome analysis Rego, Natalia; Bianchi, Sergio; Moreno, Pilar; Persson, Helena; Kvist, Anders; Pena, Alvaro; Oppezzo, Pablo; Naya, Hugo; Rovira, Carlos; Dighiero, Guillermo; Pritsch, Otto 2012 2012-04-10 None N PMC7161782 22489537.0 10.1111/j.1365-2141.2012.09116.x 71fp78kx 0.600995 Cheng_2013, Langelier_2017, Whiteford_2005, O'Leary_2016
9 Pontius_2007 Initial sequence and comparative analysis of the cat genome Pontius, Joan U.; Mullikin, James C.; Smith, Douglas R.; Lindblad-Toh, Kerstin; Gnerre, Sante; Clamp, Michele; Chang, Jean; Stephens, Robert; Neelam, Beena; Volfovsky, Natalia; Schäffer, Alejandro A.; Agarwala, Richa; Narfström, Kristina; Murphy, William J.; Giger, Urs; Roca, Alfred L.; Antunes, Agostinho; Menotti-Raymond, Marilyn; Yuhki, Naoya; Pecon-Slattery, Jill; Johnson, Warren E.; Bourque, Guillaume; Tesler, Glenn; O’Brien, Stephen J. 2007 2007-11-01 None N PMC2045150 17975172.0 10.1101/gr.6380007 x7e6e77d 0.582111 Cheng_2013, Whiteford_2005, Francis_2016
10 Twin_2013 The Potential of Metatranscriptomics for Identifying Screening Targets for Bacterial Vaginosis Twin, Jimmy; Bradshaw, Catriona S.; Garland, Suzanne M.; Fairley, Christopher K.; Fethers, Katherine; Tabrizi, Sepehr N. 2013 2013-09-27 COMM-USE N PMC3785445 24086764.0 10.1371/journal.pone.0076892 qg2r691d 0.436039 Phillippy_2009, Whiteford_2005, Cheng_2013, Francis_2016, Chang_2011
11 Chan_2014 Deep Sequencing to Identify the Causes of Viral Encephalitis Chan, Benjamin K.; Wilson, Theodore; Fischer, Kael F.; Kriesel, John D. 2014 2014-04-03 COMM-USE N PMC3974838 24699691.0 10.1371/journal.pone.0093993 65drhnk8 0.408316
12 Cifaldi_2019 Targeted NGS Platforms for Genetic Screening and Gene Discovery in Primary Immunodeficiencies Cifaldi, Cristina; Brigida, Immacolata; Barzaghi, Federica; Zoccolillo, Matteo; Ferradini, Valentina; Petricone, Davide; Cicalese, Maria Pia; Lazarevic, Dejan; Cittaro, Davide; Omrani, Maryam; Attardi, Enrico; Conti, Francesca; Scarselli, Alessia; Chiriaco, Maria; Di Cesare, Silvia; Licciardi, Francesco; Davide, Montin; Ferrua, Francesca; Canessa, Clementina; Pignata, Claudio; Giliani, Silvia; Ferrari, Simona; Fousteri, Georgia; Barera, Graziano; Merli, Pietro; Palma, Paolo; Cesaro, Simone; Gattorno, Marco; Trizzino, Antonio; Moschese, Viviana; Chini, Loredana; Villa, Anna; Azzari, Chiara; Finocchi, Andrea; Locatelli, Franco; Rossi, Paolo; Sangiuolo, Federica; Aiuti, Alessandro; Cancrini, Caterina; Di Matteo, Gigliola 2019 2019-04-11 COMM-USE N PMC6470723 31031743.0 10.3389/fimmu.2019.00316 ds9se405 0.389466 Deng_2015, Harel_2019, Phillippy_2009, Whiteford_2005
13 Herring_2007 An evaluation of Comparative Genome Sequencing (CGS) by comparing two previously-sequenced bacterial genomes Herring, Christopher D; Palsson, Bernhard Ø 2007 2007-08-14 COMM-USE N PMC2072959 17697331.0 10.1186/1471-2164-8-274 sabz03c0 0.360418 Chang_2011, Phillippy_2009, Whiteford_2005, Francis_2016, Harel_2019 Vashee_2017
14 Law_J_2013 Identification of Hepatotropic Viruses from Plasma Using Deep Sequencing: A Next Generation Diagnostic Tool Law, John; Jovel, Juan; Patterson, Jordan; Ford, Glenn; O’keefe, Sandra; Wang, Weiwei; Meng, Bo; Song, Deyong; Zhang, Yong; Tian, Zhijian; Wasilenko, Shawn T.; Rahbari, Mandana; Mitchell, Troy; Jordan, Tracy; Carpenter, Eric; Mason, Andrew L.; Wong, Gane Ka-Shu 2013 2013-04-17 COMM-USE N PMC3629200 23613733.0 10.1371/journal.pone.0060595 8vk89i4h 0.357517