Topic 11 -- Abstracts with Biological Entities (English) - 75 Topics / Sub-Topic Model 37 - 15 Topics

cite ad title authors publish year publish time dataset abstract mentions covid pmcid pubmed id doi cord uid topic weight Similarity scispacy Similarity specter
1 Sun_Y_2019 A specific sequence in the genome of respiratory syncytial virus regulates the generation of copy-back defective viral genomes Sun, Yan; Kim, Eun Ji; Felt, Sébastien A.; Taylor, Louis J.; Agarwal, Divyansh; Grant, Gregory R.; López, Carolina B. 2019 2019-04-17 COMM-USE N PMC6504078 30995283.0 10.1371/journal.ppat.1007707 nivrrsqg 0.866342 Sun_Y_2018
2 Sun_Y_2018 A specific sequence in the genome of respiratory syncytial virus regulates the generation of copy-back defective viral genomes Yan Sun; Eun Ji Kim; Sébastien A. Felt; Louis J. Taylor; Divyansh Agarwal; Gregory R. Grant; Carolina B. López 2018 2018-06-15 BioRxiv N 10.1101/349001 zj8gf45p 0.783081 Sun_Y_2019
3 Cleemput_2020 Genome Detective Coronavirus Typing Tool for rapid identification and characterization of novel coronavirus genomes Cleemput, Sara; Dumon, Wim; Fonseca, Vagner; Karim, Wasim Abdool; Giovanetti, Marta; Alcantara, Luiz Carlos; Deforche, Koen; de Oliveira, Tulio 2020 2020-02-28 None Y PMC7112083 32108862.0 10.1093/bioinformatics/btaa145 st5idleq 0.768398 Cheng_2013, Brister_2015, Lee_C_2017 Cleemput_2020
4 Cleemput_2020 Genome Detective Coronavirus Typing Tool for rapid identification and characterization of novel coronavirus genomes Sara Cleemput; Wim Dumon; Vagner Fonseca; Wasim Abdool Karim; Marta Giovanetti; Luiz Carlos Alcantara; Koen Deforche; Tulio de Oliveira 2020 2020-02-02 BioRxiv Y 10.1101/2020.01.31.928796 gxstlzuk 0.767626 Cheng_2013, Brister_2015, Lee_C_2017 Cleemput_2020
5 Zahin_2018 Identification of G-quadruplex forming sequences in three manatee papillomaviruses Zahin, Maryam; Dean, William L.; Ghim, Shin-je; Joh, Joongho; Gray, Robert D.; Khanal, Sujita; Bossart, Gregory D.; Mignucci-Giannoni, Antonio A.; Rouchka, Eric C.; Jenson, Alfred B.; Trent, John O.; Chaires, Jonathan B.; Chariker, Julia H. 2018 2018-04-09 COMM-USE N PMC5891072 29630682.0 10.1371/journal.pone.0195625 wbs5xvbp 0.765905
6 Lavezzo_2018 G-quadruplex forming sequences in the genome of all known human viruses: a comprehensive guide Enrico Lavezzo; Michele Berselli; Ilaria Frasson; Rosalba Perrone; Giorgio Palù; Alessandra R. Brazzale; Sara N. Richter; Stefano Toppo 2018 2018-06-11 BioRxiv N 10.1101/344127 c3lmmll6 0.621923 Chang_2011, Gardner_2004 Lavezzo_2018
7 Lavezzo_2018 G-quadruplex forming sequences in the genome of all known human viruses: A comprehensive guide Lavezzo, Enrico; Berselli, Michele; Frasson, Ilaria; Perrone, Rosalba; Palù, Giorgio; Brazzale, Alessandra R.; Richter, Sara N.; Toppo, Stefano 2018 2018-12-13 COMM-USE N PMC6307822 30543627.0 10.1371/journal.pcbi.1006675 csl766xl 0.582703 Chang_2011, Gardner_2004, Francis_2016
8 Wassenaar_2020 2019_nCoV/SARS‐CoV‐2: rapid classification of betacoronaviruses and identification of Traditional Chinese Medicine as potential origin of zoonotic coronaviruses Wassenaar, T.M.; Zou, Y. 2020 2020-02-28 NONCOMM Y PMC7165814 32060933.0 10.1111/lam.13285 rq9hmjsx 0.582276 Grewelle_2020
9 Wu_A_2020 Genome Composition and Divergence of the Novel Coronavirus (2019-nCoV) Originating in China Wu, Aiping; Peng, Yousong; Huang, Baoying; Ding, Xiao; Wang, Xianyue; Niu, Peihua; Meng, Jing; Zhu, Zhaozhong; Zhang, Zheng; Wang, Jiangyuan; Sheng, Jie; Quan, Lijun; Xia, Zanxian; Tan, Wenjie; Cheng, Genhong; Jiang, Taijiao 2020 2020-03-11 None Y PMC7154514 32035028.0 10.1016/j.chom.2020.02.001 orqlbw9m 0.581166
10 Wong_2020 Evidence of recombination in coronaviruses implicating pangolin origins of nCoV-2019 Matthew C. Wong; Sara J. Javornik Cregeen; Nadim J. Ajami; Joseph F. Petrosino 2020 2020-02-13 BioRxiv Y 10.1101/2020.02.07.939207 dnxhtbxn 0.563700 Taboada_2016
11 Tausch_2018 PathoLive - Real-time pathogen identification from metagenomic Illumina datasets Simon H. Tausch; Tobias P. Loka; Jakob M. Schulze; Andreas Andrusch; Jeanette Klenner; Piotr Wojciech Dabrowski; Martin S. Lindner; Andreas Nitsche; Bernhard Y. Renard 2018 2018-08-31 BioRxiv Y 10.1101/402370 wk70iipl 0.415023 Lee_C_2017, Chang_2011, Cheng_2013, Deng_2015, Brister_2015 Zinter_2018, Li_C_2020
12 Noell_2019 Further Defining the Human Virome using NGS: Identification of Redondoviridae Noell, Kristin; Kolls, Jay K. 2019 2019-05-08 PMC N PMC6849504 31071291.0 10.1016/j.chom.2019.04.010 ru8nyydl 0.367455
13 Zhou_2006 An Oligonucleotide Microarray for High-Throughput Sequencing of the Mitochondrial Genome Zhou, Shaoyu; Kassauei, Keyaunoosh; Cutler, David J.; Kennedy, Giulia C.; Sidransky, David; Maitra, Anirban; Califano, Joseph 2006 2006-09-01 PMC N PMC1867623 16931588.0 10.2353/jmoldx.2006.060008 hr1ehth1 0.337599 Whiteford_2005, Phillippy_2009, Harel_2019, Langelier_2017
14 Wahba_2020 Identification of a Pangolin Niche for a 2019-nCoV-like Coronavirus via an Extensive Meta-metagenomic Search Lamia Wahba; Nimit Jain; Andrew Z. Fire; Massa J. Shoura; Karen L. Artiles; Matthew J. McCoy; Dae-Eun Jeong 2020 2020-02-14 BioRxiv Y 10.1101/2020.02.08.939660 emr0eh0i 0.314065 Cheng_2013, Lee_C_2017, O'Leary_2016, Deng_2015, Brister_2015
15 Wilkinson_2020 Partial RdRp sequences offer a robust method for Coronavirus subgenus classification David A Wilkinson; Lea Joffrin; Camille Lebarbenchon; Patrick Mavingui 2020 2020-03-06 BioRxiv N 10.1101/2020.03.02.974311 jjraqr85 0.314020 Chang_2011, Lee_C_2017, Gardner_2004
16 Leclercq_2010 Use of consensus sequences for the design of high density resequencing microarrays: the influenza virus paradigm Leclercq, India; Berthet, Nicolas; Batéjat, Christophe; Rousseaux, Claudine; Dickinson, Philip; Old, Iain G; Kong, Katherine; Kennedy, Giulia C; Cole, Stewart T; Manuguerra, Jean-Claude 2010 2010-10-20 COMM-USE N PMC3091733 20961419.0 10.1186/1471-2164-11-586 t3etupgh 0.309575 Chang_2011, Gardner_2004