1 |
Wille_2019 |
Virome heterogeneity and connectivity in waterfowl and shorebird communities |
Wille, Michelle; Shi, Mang; Klaassen, Marcel; Hurt, Aeron C.; Holmes, Edward C. |
2019 |
2019-06-25 |
None |
N |
PMC6775988 |
31239538.0 |
10.1038/s41396-019-0458-0 |
9flgtv0z |
0.951861 |
|
Wille_2019 |
2 |
Holtz_2014 |
Geographic variation in the eukaryotic virome of human diarrhea |
Holtz, Lori R.; Cao, Song; Zhao, Guoyan; Bauer, Irma K.; Denno, Donna M.; Klein, Eileen J.; Antonio, Martin; Stine, O. Colin; Snelling, Thomas L.; Kirkwood, Carl D.; Wang, David |
2014 |
2014-11-30 |
None |
N |
PMC4254309 |
25262473.0 |
10.1016/j.virol.2014.09.012 |
e8ljkv2y |
0.939346 |
|
|
3 |
Wille_2019 |
Virome heterogeneity and connectivity in waterfowl and shorebird communities |
Michelle Wille; Mang Shi; Marcel Klaassen; Aeron C. Hurt; Edward C. Holmes |
2019 |
2019-01-29 |
BioRxiv |
N |
|
|
10.1101/528174 |
yzjh6ot3 |
0.926524 |
|
Wille_2019 |
4 |
Gu_X_2018 |
Geospatial distribution of viromes in tropical freshwater ecosystems |
Gu, Xiaoqiong; Tay, Qi Xiang Martin; Te, Shu Harn; Saeidi, Nazanin; Goh, Shin Giek; Kushmaro, Ariel; Thompson, Janelle R.; Gin, Karina Yew-Hoong |
2018 |
2018-06-15 |
PMC |
N |
PMC7112100 |
29550725.0 |
10.1016/j.watres.2018.03.017 |
355q6k6k |
0.924753 |
|
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5 |
Moreno_2017 |
Characterisation of the canine faecal virome in healthy dogs and dogs with acute diarrhoea using shotgun metagenomics |
Moreno, Paloma S.; Wagner, Josef; Mansfield, Caroline S.; Stevens, Matthew; Gilkerson, James R.; Kirkwood, Carl D. |
2017 |
2017-06-01 |
COMM-USE |
N |
PMC5453527 |
28570584.0 |
10.1371/journal.pone.0178433 |
pue5q5wp |
0.882208 |
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6 |
Sachsenröder_2014 |
The General Composition of the Faecal Virome of Pigs Depends on Age, but Not on Feeding with a Probiotic Bacterium |
Sachsenröder, Jana; Twardziok, Sven O.; Scheuch, Matthias; Johne, Reimar |
2014 |
2014-02-19 |
COMM-USE |
N |
PMC3929612 |
24586429.0 |
10.1371/journal.pone.0088888 |
yjaiybwf |
0.881674 |
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7 |
Zhao_2018 |
Metagenomic Analysis of the Jinding Duck Fecal Virome |
Zhao, Lili; Niu, Yinjie; Lu, Taofeng; Yin, Haichang; Zhang, Yuanyuan; Xu, Lijing; Wang, Yiping; Chen, Hongyan |
2018 |
2018-01-24 |
PMC |
N |
PMC7080049 |
29368024.0 |
10.1007/s00284-018-1430-3 |
r03hisns |
0.868071 |
|
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8 |
Woo_P_2014 |
Metagenomic analysis of viromes of dromedary camel fecal samples reveals large number and high diversity of circoviruses and picobirnaviruses |
Woo, Patrick C.Y.; Lau, Susanna K.P.; Teng, Jade L.L.; Tsang, Alan K.L.; Joseph, Marina; Wong, Emily Y.M.; Tang, Ying; Sivakumar, Saritha; Bai, Ru; Wernery, Renate; Wernery, Ulrich; Yuen, Kwok-Yung |
2014 |
2014-12-31 |
PMC |
N |
PMC7112128 |
25461537.0 |
10.1016/j.virol.2014.09.020 |
81t59up3 |
0.840721 |
|
Conceição-Neto_2015, Lee_D_2019 |
9 |
Devaney_2016 |
A metagenomic comparison of endemic viruses from broiler chickens with runting-stunting syndrome and from normal birds |
Devaney, Ryan; Trudgett, James; Trudgett, Alan; Meharg, Caroline; Smyth, Victoria |
2016 |
2016-10-04 |
PMC |
N |
PMC7113909 |
27215546.0 |
10.1080/03079457.2016.1193123 |
wbkfjz8r |
0.801950 |
|
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10 |
Zhang_2005 |
RNA Viral Community in Human Feces: Prevalence of Plant Pathogenic Viruses |
Zhang, Tao; Breitbart, Mya; Lee, Wah Heng; Run, Jin-Quan; Wei, Chia Lin; Soh, Shirlena Wee Ling; Hibberd, Martin L; Liu, Edison T; Rohwer, Forest; Ruan, Yijun |
2005 |
2005-12-20 |
COMM-USE |
N |
PMC1310650 |
16336043.0 |
10.1371/journal.pbio.0040003 |
rxbcuseq |
0.799476 |
|
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11 |
Chong_2018 |
Characterisation of the faecal virome of captive and wild Tasmanian devils using virus-like particles metagenomics and meta-transcriptomics |
Rowena Chong; Mang Shi; Catherine E Grueber; Edward C Holmes; Carolyn Hogg; Katherine Belov; Vanessa R Barrs |
2018 |
2018-10-15 |
BioRxiv |
N |
|
|
10.1101/443457 |
4uahwkp8 |
0.798407 |
|
Chong_2019, Conceição-Neto_2015 |
12 |
Fontenele_2019 |
Single Stranded DNA Viruses Associated with Capybara Faeces Sampled in Brazil |
Fontenele, Rafaela S.; Lacorte, Cristiano; Lamas, Natalia S.; Schmidlin, Kara; Varsani, Arvind; Ribeiro, Simone G. |
2019 |
2019-08-02 |
COMM-USE |
N |
PMC6723397 |
31382446.0 |
10.3390/v11080710 |
4e3wgv4e |
0.787945 |
|
Lee_D_2019 |
13 |
Conceição-Neto_2015 |
Fecal virome analysis of three carnivores reveals a novel nodavirus and multiple gemycircularviruses |
Conceição-Neto, Nádia; Zeller, Mark; Heylen, Elisabeth; Lefrère, Hanne; Mesquita, João Rodrigo; Matthijnssens, Jelle |
2015 |
2015-05-20 |
COMM-USE |
N |
PMC4459443 |
25986582.0 |
10.1186/s12985-015-0305-5 |
7x5dckk7 |
0.784424 |
|
Lee_D_2019 |
14 |
Li_Y_2017 |
Identification of diverse viruses in upper respiratory samples in dromedary camels from United Arab Emirates |
Li, Yan; Khalafalla, Abdelmalik Ibrahim; Paden, Clinton R.; Yusof, Mohammed F.; Eltahir, Yassir M.; Al Hammadi, Zulaikha M.; Tao, Ying; Queen, Krista; Hosani, Farida Al; Gerber, Susan I.; Hall, Aron J.; Al Muhairi, Salama; Tong, Suxiang |
2017 |
2017-09-13 |
COMM-USE |
N |
PMC5597213 |
28902913.0 |
10.1371/journal.pone.0184718 |
udlf9t1t |
0.770085 |
|
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15 |
Brisebois_2018 |
Human viral pathogens are pervasive in wastewater treatment center aerosols |
Brisebois, Evelyne; Veillette, Marc; Dion-Dupont, Vanessa; Lavoie, Jacques; Corbeil, Jacques; Culley, Alexander; Duchaine, Caroline |
2018 |
2018-05-31 |
PMC |
N |
PMC7128102 |
29778173.0 |
10.1016/j.jes.2017.07.015 |
jgrl4okd |
0.732394 |
|
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16 |
Cortey_2019 |
High levels of unreported intraspecific diversity among RNA viruses in faeces of neonatal piglets with diarrhoea |
Cortey, Martí; Díaz, Ivan; Vidal, Anna; Martín-Valls, Gerard; Franzo, Giovanni; Gómez de Nova, Pedro José; Darwich, Laila; Puente, Héctor; Carvajal, Ana; Martín, Marga; Mateu, Enric |
2019 |
2019-12-05 |
COMM-USE |
N |
PMC6896758 |
31805938.0 |
10.1186/s12917-019-2204-2 |
aaxvlktp |
0.720040 |
|
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17 |
Xie_X_2018 |
Prevalence of fecal viruses and bacteriophage in Canadian farmed mink (Neovison vison) |
Xie, Xiao‐Ting; Kropinski, Andrew M.; Tapscott, Brian; Weese, J. Scott; Turner, Patricia V. |
2018 |
2018-04-10 |
COMM-USE |
N |
PMC6341152 |
29635866.0 |
10.1002/mbo3.622 |
qcpcr7uv |
0.717172 |
Taboada_2016 |
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18 |
Caddy_2018 |
New viruses associated with canine gastroenteritis |
Caddy, S.L. |
2018 |
2018-02-28 |
PMC |
N |
PMC7110870 |
29428093.0 |
10.1016/j.tvjl.2017.12.009 |
sp45lrz5 |
0.712056 |
|
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19 |
Day_J_2015 |
Comparative Analysis of the Intestinal Bacterial and RNA Viral Communities from Sentinel Birds Placed on Selected Broiler Chicken Farms |
Day, J. Michael; Oakley, Brian B.; Seal, Bruce S.; Zsak, Laszlo |
2015 |
2015-01-30 |
COMM-USE |
N |
PMC4311960 |
25635690.0 |
10.1371/journal.pone.0117210 |
xgnisa56 |
0.700418 |
|
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20 |
Vibin_2018 |
Metagenomics detection and characterisation of viruses in faecal samples from Australian wild birds |
Vibin, Jessy; Chamings, Anthony; Collier, Fiona; Klaassen, Marcel; Nelson, Tiffanie M.; Alexandersen, Soren |
2018 |
2018-06-06 |
None |
N |
PMC5989203 |
29875375.0 |
10.1038/s41598-018-26851-1 |
l2n0xvmd |
0.681177 |
|
Dacheux_2014 |
21 |
Chong_2019 |
Fecal Viral Diversity of Captive and Wild Tasmanian Devils Characterized Using Virion-Enriched Metagenomics and Metatranscriptomics |
Chong, Rowena; Shi, Mang; Grueber, Catherine E.; Holmes, Edward C.; Hogg, Carolyn J.; Belov, Katherine; Barrs, Vanessa R. |
2019 |
2019-05-15 |
COMM-USE |
N |
PMC6532096 |
30867308.0 |
10.1128/jvi.00205-19 |
t1anr8gd |
0.680285 |
Grewelle_2020, Roux_2019 |
Chong_2018, Conceição-Neto_2015 |
22 |
Liu_P_2019 |
Viral Metagenomics Revealed Sendai Virus and Coronavirus Infection of Malayan Pangolins (Manis javanica) |
Liu, Ping; Chen, Wu; Chen, Jin-Ping |
2019 |
2019-10-24 |
COMM-USE |
N |
PMC6893680 |
31652964.0 |
10.3390/v11110979 |
wrmfxkoa |
0.668080 |
Grewelle_2020 |
|
23 |
Zhang_2014 |
What is for dinner? Viral metagenomics of US store bought beef, pork, and chicken |
Zhang, Wen; Li, Linlin; Deng, Xutao; Kapusinszky, Beatrix; Delwart, Eric |
2014 |
2014-11-30 |
PMC |
N |
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25217712.0 |
10.1016/j.virol.2014.08.025 |
udo5x2nx |
0.668033 |
|
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24 |
Fawaz_2016 |
Duck gut viral metagenome analysis captures snapshot of viral diversity |
Fawaz, Mohammed; Vijayakumar, Periyasamy; Mishra, Anamika; Gandhale, Pradeep N.; Dutta, Rupam; Kamble, Nitin M.; Sudhakar, Shashi B.; Roychoudhary, Parimal; Kumar, Himanshu; Kulkarni, Diwakar D.; Raut, Ashwin Ashok |
2016 |
2016-06-09 |
COMM-USE |
N |
PMC4899906 |
27284287.0 |
10.1186/s13099-016-0113-5 |
54s1fae3 |
0.642180 |
|
Dacheux_2014 |
25 |
Shah_2014 |
Comparison of tissue sample processing methods for harvesting the viral metagenome and a snapshot of the RNA viral community in a turkey gut |
Shah, Jigna D.; Baller, Joshua; Zhang, Ying; Silverstein, Kevin; Xing, Zheng; Cardona, Carol J. |
2014 |
2014-12-01 |
PMC |
N |
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25181646.0 |
10.1016/j.jviromet.2014.08.011 |
rh1ad6bv |
0.641105 |
Smits_2014 |
|
26 |
Li_W_2020 |
Virome diversity analysis reveals novel enteroviruses and a human picobirnavirus in stool samples from African green monkeys with diarrhea |
Li, Wenjuan; Qiang, Xin; Qin, Si; Huang, Yong; Hu, Yan; Bai, Bingke; Hou, Jun; Gao, Rong; Zhang, Xianglilan; Mi, Zhiqiang; Fan, Hang; Ye, Huahu; Tong, Yigang; Mao, Panyong |
2020 |
2020-08-31 |
PMC |
N |
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32165243.0 |
10.1016/j.meegid.2020.104279 |
5q7wdamu |
0.605542 |
|
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27 |
Wang_2018 |
The fecal virome of red-crowned cranes |
Wang, Yan; Yang, Shixing; Liu, Dawei; Zhou, Chenglin; Li, Wang; Lin, Yuan; Wang, Xiaochun; Shen, Quan; Wang, Hua; Li, Chuang; Zong, Minghui; Ding, Yuzhu; Song, Qianben; Deng, Xutao; Qi, Dunwu; Zhang, Wen; Delwart, Eric |
2018 |
2018-09-17 |
PMC |
N |
PMC7086969 |
30225519.0 |
10.1007/s00705-018-4037-x |
db45qdjl |
0.573767 |
|
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28 |
Calusinska_2016 |
Analysis of dsDNA and RNA viromes in methanogenic digesters reveals novel viral genetic diversity |
Calusinska, Magdalena; Marynowska, Martyna; Goux, Xavier; Lentzen, Esther; Delfosse, Philippe |
2016 |
2016-01-18 |
NONCOMM |
N |
PMC7163765 |
26568175.0 |
10.1111/1462-2920.13127 |
au5aqr02 |
0.567575 |
Francis_2016, Koonin_2015 |
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29 |
Hewson_2011 |
Description of viral assemblages associated with the Gorgonia ventalina holobiont |
Hewson, I.; Brown, J. M.; Burge, C. A.; Couch, C. S.; LaBarre, B. A.; Mouchka, M. E.; Naito, M.; Harvell, C. D. |
2011 |
2011-12-29 |
PMC |
N |
PMC7087884 |
|
10.1007/s00338-011-0864-x |
cy049zbi |
0.558430 |
|
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30 |
Dumarest_2015 |
Viral diversity in swine intestinal mucus used for the manufacture of heparin as analyzed by high-throughput sequencing |
Dumarest, Marine; Muth, Erika; Cheval, Justine; Gratigny, Marlène; Hébert, Charles; Gagnieur, Léa; Eloit, Marc |
2015 |
2015-01-31 |
PMC |
N |
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25466699.0 |
10.1016/j.biologicals.2014.10.004 |
dkqi22z0 |
0.545821 |
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31 |
Sachsenröder_2012 |
Simultaneous Identification of DNA and RNA Viruses Present in Pig Faeces Using Process-Controlled Deep Sequencing |
Sachsenröder, Jana; Twardziok, Sven; Hammerl, Jens A.; Janczyk, Pawel; Wrede, Paul; Hertwig, Stefan; Johne, Reimar |
2012 |
2012-04-13 |
COMM-USE |
N |
PMC3326065 |
22514648.0 |
10.1371/journal.pone.0034631 |
jwbuwa9k |
0.528648 |
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32 |
He_B_2013 |
Virome Profiling of Bats from Myanmar by Metagenomic Analysis of Tissue Samples Reveals More Novel Mammalian Viruses |
He, Biao; Li, Zuosheng; Yang, Fanli; Zheng, Junfeng; Feng, Ye; Guo, Huancheng; Li, Yingying; Wang, Yiyin; Su, Nan; Zhang, Fuqiang; Fan, Quanshui; Tu, Changchun |
2013 |
2013-04-22 |
COMM-USE |
N |
PMC3632529 |
23630620.0 |
10.1371/journal.pone.0061950 |
04d0koah |
0.520149 |
|
Lee_D_2019 |
33 |
Dacheux_2014 |
A Preliminary Study of Viral Metagenomics of French Bat Species in Contact with Humans: Identification of New Mammalian Viruses |
Dacheux, Laurent; Cervantes-Gonzalez, Minerva; Guigon, Ghislaine; Thiberge, Jean-Michel; Vandenbogaert, Mathias; Maufrais, Corinne; Caro, Valérie; Bourhy, Hervé |
2014 |
2014-01-29 |
None |
N |
PMC3906132 |
24489870.0 |
10.1371/journal.pone.0087194 |
g3rfwhwr |
0.479204 |
|
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34 |
Qin_S_2018 |
Viral communities associated with porcine respiratory disease complex in intensive commercial farms in Sichuan province, China |
Qin, Sinan; Ruan, Wenqiang; Yue, Hua; Tang, Cheng; Zhou, Kelei; Zhang, Bin |
2018 |
2018-09-06 |
COMM-USE |
N |
PMC6127300 |
30190594.0 |
10.1038/s41598-018-31554-8 |
i7fkaohw |
0.468178 |
|
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35 |
Linsuwanon_2015 |
The Fecal Virome of Children with Hand, Foot, and Mouth Disease that Tested PCR Negative for Pathogenic Enteroviruses |
Linsuwanon, Piyada; Poovorawan, Yong; Li, Linlin; Deng, Xutao; Vongpunsawad, Sompong; Delwart, Eric |
2015 |
2015-08-19 |
COMM-USE |
N |
PMC4545796 |
26288145.0 |
10.1371/journal.pone.0135573 |
84hxim2n |
0.437807 |
|
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36 |
Geldenhuys_2018 |
A metagenomic viral discovery approach identifies potential zoonotic and novel mammalian viruses in Neoromicia bats within South Africa |
Geldenhuys, Marike; Mortlock, Marinda; Weyer, Jacqueline; Bezuidt, Oliver; Seamark, Ernest C. J.; Kearney, Teresa; Gleasner, Cheryl; Erkkila, Tracy H.; Cui, Helen; Markotter, Wanda |
2018 |
2018-03-26 |
COMM-USE |
N |
PMC5868816 |
29579103.0 |
10.1371/journal.pone.0194527 |
uf7usvuu |
0.431995 |
|
Lee_D_2019, Dacheux_2014 |
37 |
Mihalov-Kovács_2014 |
The fecal virome of domesticated animals |
Mihalov-Kovács, Eszter; Fehér, Enikő; Martella, Vito; Bányai, Krisztián; Farkas, Szilvia L. |
2014 |
2014-02-01 |
PMC |
N |
PMC4188178 |
25674581.0 |
10.1007/s13337-014-0192-1 |
k0fw3vr3 |
0.401890 |
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Knutson_2017 |
38 |
Lojkić_2016 |
Faecal virome of red foxes from peri-urban areas |
Lojkić, Ivana; Biđin, Marina; Prpić, Jelena; Šimić, Ivana; Krešić, Nina; Bedeković, Tomislav |
2016 |
2016-04-30 |
PMC |
N |
PMC7112549 |
27012914.0 |
10.1016/j.cimid.2016.01.005 |
neqj85xf |
0.397137 |
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Lee_D_2019 |
39 |
Knutson_2017 |
A porcine enterovirus G associated with enteric disease contains a novel papain-like cysteine protease |
Knutson, Todd P.; Velayudhan, Binu T.; Marthaler, Douglas G. |
2017 |
2017-06-08 |
COMM-USE |
N |
PMC5656790 |
28590234.0 |
10.1099/jgv.0.000799 |
og2vsgjn |
0.374273 |
Langelier_2017, Smits_2014, Deng_2015, Cheng_2013 |
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40 |
Soffer_2013 |
Potential role of viruses in white plague coral disease |
Soffer, Nitzan; Brandt, Marilyn E; Correa, Adrienne MS; Smith, Tyler B; Thurber, Rebecca Vega |
2013 |
2013-08-15 |
PMC |
N |
PMC3906806 |
23949663.0 |
10.1038/ismej.2013.137 |
pgqsezq2 |
0.365584 |
|
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41 |
Lian_2014 |
Novel Circovirus from Mink, China |
Lian, Hai; Liu, Ye; Li, Nan; Wang, Yuying; Zhang, Shoufeng; Hu, Rongliang |
2014 |
2014-09-23 |
PMC |
N |
PMC4178405 |
25148585.0 |
10.3201/eid2009.140015 |
w9vnk3i6 |
0.354978 |
|
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42 |
Swanson_2010 |
Phylogenetic and gene-centric metagenomics of the canine intestinal microbiome reveals similarities with humans and mice |
Swanson, Kelly S; Dowd, Scot E; Suchodolski, Jan S; Middelbos, Ingmar S; Vester, Brittany M; Barry, Kathleen A; Nelson, Karen E; Torralba, Manolito; Henrissat, Bernard; Coutinho, Pedro M; Cann, Isaac KO; White, Bryan A; Fahey, George C |
2010 |
2010-10-21 |
PMC |
N |
PMC3105739 |
20962874.0 |
10.1038/ismej.2010.162 |
nmmkkvaq |
0.349637 |
Francis_2016 |
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43 |
Manara_2019 |
Microbial genomes from non-human primate gut metagenomes expand the primate-associated bacterial tree of life with over 1000 novel species |
Manara, Serena; Asnicar, Francesco; Beghini, Francesco; Bazzani, Davide; Cumbo, Fabio; Zolfo, Moreno; Nigro, Eleonora; Karcher, Nicolai; Manghi, Paolo; Metzger, Marisa Isabell; Pasolli, Edoardo; Segata, Nicola |
2019 |
2019-12-28 |
COMM-USE |
N |
PMC6935492 |
31883524.0 |
10.1186/s13059-019-1923-9 |
ehcu68cg |
0.348306 |
Delwart_2012, Roux_2019 |
Li_H_2019 |
44 |
Wittekindt_2010 |
Nodeomics: Pathogen Detection in Vertebrate Lymph Nodes Using Meta-Transcriptomics |
Wittekindt, Nicola E.; Padhi, Abinash; Schuster, Stephan C.; Qi, Ji; Zhao, Fangqing; Tomsho, Lynn P.; Kasson, Lindsay R.; Packard, Michael; Cross, Paul; Poss, Mary |
2010 |
2010-10-18 |
COMM-USE |
N |
PMC2956653 |
20976145.0 |
10.1371/journal.pone.0013432 |
v4jochbe |
0.341429 |
|
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45 |
Wang_2016 |
Metagenomic analysis of viral genetic diversity in respiratory samples from children with severe acute respiratory infection in China |
Wang, Y.; Zhu, N.; Li, Y.; Lu, R.; Wang, H.; Liu, G.; Zou, X.; Xie, Z.; Tan, W. |
2016 |
2016-05-31 |
PMC |
N |
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26802214.0 |
10.1016/j.cmi.2016.01.006 |
p0cxsrzb |
0.335644 |
Zhang_2020 |
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46 |
Kraberger_2019 |
Novel smacoviruses identified in the faeces of two wild felids: North American bobcat and African lion |
Kraberger, Simona; Serieys, Laurel; Fountain-Jones, Nicolas; Packer, Craig; Riley, Seth; Varsani, Arvind |
2019 |
2019-06-22 |
PMC |
N |
PMC7086625 |
31240485.0 |
10.1007/s00705-019-04329-3 |
4ipimv1a |
0.314143 |
|
Lee_D_2019 |
47 |
Rosario_2015 |
Novel circular single-stranded DNA viruses identified in marine invertebrates reveal high sequence diversity and consistent predicted intrinsic disorder patterns within putative structural proteins |
Rosario, Karyna; Schenck, Ryan O.; Harbeitner, Rachel C.; Lawler, Stephanie N.; Breitbart, Mya |
2015 |
2015-07-10 |
COMM-USE |
N |
PMC4498126 |
26217327.0 |
10.3389/fmicb.2015.00696 |
9o3ivbc2 |
0.305061 |
Mushegian_2018 |
Cook_2013, Lima_2015 |
48 |
Kwok_2020 |
Virus Metagenomics in Farm Animals: A Systematic Review |
Kwok, Kirsty T. T.; Nieuwenhuijse, David F.; Phan, My V. T.; Koopmans, Marion P. G. |
2020 |
2020-01-16 |
None |
N |
PMC7019290 |
31963174.0 |
10.3390/v12010107 |
47e37xl0 |
0.304401 |
|
Dacheux_2014 |