Topic 05 -- Abstracts with Biological Entities (English) - 75 Topics / Sub-Topic Model 37 - 15 Topics

cite ad title authors publish year publish time dataset abstract mentions covid pmcid pubmed id doi cord uid topic weight Similarity scispacy Similarity specter
1 Wolf_2018 Origins and Evolution of the Global RNA Virome Wolf, Yuri I.; Kazlauskas, Darius; Iranzo, Jaime; Lucía-Sanz, Adriana; Kuhn, Jens H.; Krupovic, Mart; Dolja, Valerian V.; Koonin, Eugene V. 2018 2018-11-27 PMC N PMC6282212 30482837.0 10.1128/mbio.02329-18 p1b07b4t 0.987349 Wolf_2018
2 Wolf_2018 Origins and Evolution of the Global RNA Virome Yuri I. Wolf; Darius Kazlauskas; Jaime Iranzo; Adriana LucÍa-Sanz; Jens H. Kuhn; Mart Krupovic; Valerian V. Dolja; Eugene V. Koonin 2018 2018-10-24 BioRxiv N 10.1101/451740 8z78shbf 0.953863 Wolf_2018 Wolf_2018
3 Rawlings_2019 Origins of peptidases Rawlings, Neil D.; Bateman, Alex 2019 2019-11-30 PMC N PMC7117030 31377195.0 10.1016/j.biochi.2019.07.026 xdzbwa6z 0.945676 Mushegian_2018, Koonin_2015
4 Cann_2016 Chapter 3 Genomes Cann, Alan J. 2016 2016-12-31 PMC N PMC7150238 10.1016/b978-0-12-801946-7.00003-1 47q0yaxr 0.930024 Cann_2012
5 Szpara_2019 Mechanisms of DNA Virus Evolution Szpara, Moriah L.; Van Doorslaer, Koenraad 2019 2019-12-31 PMC N 10.1016/b978-0-12-809633-8.20993-x sx608o1u 0.861565
6 Malik_2017 Do Viruses Exchange Genes across Superkingdoms of Life? Malik, Shahana S.; Azem-e-Zahra, Syeda; Kim, Kyung Mo; Caetano-Anollés, Gustavo; Nasir, Arshan 2017 2017-10-31 COMM-USE N PMC5671483 29163404.0 10.3389/fmicb.2017.02110 12dee0lv 0.853089 Koonin_2015
7 Mushegian_2018 Sequence analysis of malacoherpesvirus proteins: Pan-herpesvirus capsid module and replication enzymes with an ancient connection to “Megavirales” Mushegian, Arcady; Karin, Eli Levy; Pupko, Tal 2018 2018-01-01 PMC N 29065352.0 10.1016/j.virol.2017.10.009 elmqg45v 0.828199
8 Koonin_2015 Origins and evolution of viruses of eukaryotes: The ultimate modularity Koonin, Eugene V.; Dolja, Valerian V.; Krupovic, Mart 2015 2015-05-31 PMC N 25771806.0 10.1016/j.virol.2015.02.039 rjthvtul 0.822596
9 Sällman_Almén_2012 The Dispanins: A Novel Gene Family of Ancient Origin That Contains 14 Human Members Sällman Almén, Markus; Bringeland, Nathalie; Fredriksson, Robert; Schiöth, Helgi B. 2012 2012-02-20 COMM-USE N PMC3282796 22363774.0 10.1371/journal.pone.0031961 dcid9emx 0.815597 Mushegian_2018, Odom_2009
10 Caprari_2015 Sequence and Structure Analysis of Distantly-Related Viruses Reveals Extensive Gene Transfer between Viruses and Hosts and among Viruses Caprari, Silvia; Metzler, Saskia; Lengauer, Thomas; Kalinina, Olga V. 2015 2015-10-19 COMM-USE N PMC4632390 26492264.0 10.3390/v7102882 jempqbk6 0.813305 Mushegian_2018, Odom_2009
11 Burrell_2017 Chapter 2 Classification of Viruses and Phylogenetic Relationships Burrell, Christopher J.; Howard, Colin R.; Murphy, Frederick A. 2017 2017-12-31 PMC N PMC7149777 10.1016/b978-0-12-375156-0.00002-3 y8c60w4a 0.765406 Chang_2011 Ward_1993, Kuhn_2020
12 Dolja_2018 Metagenomics reshapes the concepts of RNA virus evolution by revealing extensive horizontal virus transfer Dolja, Valerian V.; Koonin, Eugene V. 2018 2018-01-15 PMC N 29103997.0 10.1016/j.virusres.2017.10.020 3abf6al7 0.742191 Wolf_2018
13 Medvedev_2018 Functional and evolutionary analysis of viral proteins containing a Rossmann‐like fold Medvedev, Kirill E.; Kinch, Lisa N.; Grishin, Nick V. 2018 2018-06-13 PMC N PMC6153405 29722076.0 10.1002/pro.3438 4fota9rl 0.688412 Odom_2009, Mushegian_2018
14 Zmasek_2019 Classification of human Herpesviridae proteins using Domain-architecture Aware Inference of Orthologs (DAIO) Zmasek, Christian M.; Knipe, David M.; Pellett, Philip E.; Scheuermann, Richard H. 2019 2019-03-31 PMC N 30660046.0 10.1016/j.virol.2019.01.005 mqd4ioj4 0.686574 Cheng_2013, Chang_2011
15 Greninger_2018 A decade of RNA virus metagenomics is (not) enough Greninger, Alexander L. 2018 2018-01-15 PMC N PMC7114529 29055712.0 10.1016/j.virusres.2017.10.014 048xo7jn 0.664380 Shi_M_2018
16 Ward_1993 Progress towards a higher taxonomy of viruses Ward, C.W. 1993 1993-12-31 PMC N 8140287.0 10.1016/s0923-2516(06)80059-2 5xuh0960 0.652068
17 Cann_2012 Chapter 3 Genomes Cann, Alan J. 2012 2012-12-31 PMC N PMC7149632 10.1016/b978-0-12-384939-7.10003-1 aioomgjk 0.609486
18 Saitou_2013 Eukaryote Genomes Saitou, Naruya 2013 2013-08-22 PMC N PMC7119937 10.1007/978-1-4471-5304-7_8 ef6svn8f 0.605974 Cheng_2013, Francis_2016 Francis_2016
19 Gao_L_2007 Whole genome molecular phylogeny of large dsDNA viruses using composition vector method Gao, Lei; Qi, Ji 2007 2007-03-15 COMM-USE N PMC1839080 17359548.0 10.1186/1471-2148-7-41 p529ylc1 0.559965 Chang_2011, Francis_2016 Yu_Z_2010, Pride_2006
20 Gorbalenya_2018 Increasing the number of available ranks in virus taxonomy from five to ten and adopting the Baltimore classes as taxa at the basal rank Gorbalenya, Alexander E. 2018 2018-06-26 COMM-USE N PMC6132925 29942981.0 10.1007/s00705-018-3915-6 upi9ie6d 0.554407 Chang_2011 Ward_1993, Kuhn_2020
21 te_Velthuis_2014 Common and unique features of viral RNA-dependent polymerases te Velthuis, Aartjan J. W. 2014 2014-08-01 PMC N PMC4207942 25080879.0 10.1007/s00018-014-1695-z snth4ah6 0.545951
22 Villarreal_2008 Evolution of Viruses Villarreal, L.P. 2008 2008-12-31 PMC N PMC7149781 10.1016/b978-012374410-4.00706-8 01a8er2v 0.540809 Grewelle_2020
23 Holmes_2011 The Evolution of Endogenous Viral Elements Holmes, Edward C. 2011 2011-10-20 PMC N 22018237.0 10.1016/j.chom.2011.09.002 nyb20mhi 0.536789
24 Zhang_2018 The diversity, evolution and origins of vertebrate RNA viruses Zhang, Yong-Zhen; Wu, Wei-Chen; Shi, Mang; Holmes, Edward C 2018 2018-08-31 PMC N PMC7102767 30114593.0 10.1016/j.coviro.2018.07.017 ndt8f812 0.523179
25 Ackermann_1998 Tailed Bacteriophages: The Order Caudovirales Ackermann, Hans-W. 1998 1998-12-31 PMC N 9891587.0 10.1016/s0065-3527(08)60785-x v5avfe7l 0.516719 Mushegian_2018
26 HENNIG_2004 The revolution of the biology of the genome HENNIG, Wolfgang 2004 2004-02-23 PMC N PMC7091781 15040884.0 10.1038/sj.cr.7290196 bmfdd0e2 0.492906
27 O’Carroll_2016 Viral Nucleic Acids O’Carroll, I.P.; Rein, A. 2016 2016-12-31 PMC N 10.1016/b978-0-12-394447-4.10061-6 fyxn0g3v 0.480594
28 Palmeira_2010 PhEVER: a database for the global exploration of virus–host evolutionary relationships Palmeira, Leonor; Penel, Simon; Lotteau, Vincent; Rabourdin-Combe, Chantal; Gautier, Christian 2010 2010-11-16 NONCOMM N PMC3013642 21081560.0 10.1093/nar/gkq1013 b66bb2ri 0.479331 Cheng_2013
29 Sun_J_2010 Whole-genome based Archaea phylogeny and taxonomy: A composition vector approach Sun, JianDong; Xu, Zhao; Hao, BaiLin 2010 2010-08-11 PMC N PMC7089326 10.1007/s11434-010-3008-8 xjmicuki 0.477751 Cheng_2013, Chang_2011 Yu_Z_2010, Li_S_2014
30 Rosario_2015 Novel circular single-stranded DNA viruses identified in marine invertebrates reveal high sequence diversity and consistent predicted intrinsic disorder patterns within putative structural proteins Rosario, Karyna; Schenck, Ryan O.; Harbeitner, Rachel C.; Lawler, Stephanie N.; Breitbart, Mya 2015 2015-07-10 COMM-USE N PMC4498126 26217327.0 10.3389/fmicb.2015.00696 9o3ivbc2 0.472354 Mushegian_2018 Cook_2013, Lima_2015
31 Cheung_2013 A divergent clade of circular single-stranded DNA viruses from pig feces Cheung, Andrew K.; Ng, Terry F.; Lager, Kelly M.; Bayles, Darrell O.; Alt, David P.; Delwart, Eric L.; Pogranichniy, Roman M.; Kehrli, Marcus E. 2013 2013-04-24 PMC N PMC4175981 23612924.0 10.1007/s00705-013-1701-z tu6g977q 0.463749 Lima_2015
32 Shi_M_2018 Meta-transcriptomics and the evolutionary biology of RNA viruses Shi, Mang; Zhang, Yong-Zhen; Holmes, Edward C. 2018 2018-01-02 PMC N PMC7127328 29111455.0 10.1016/j.virusres.2017.10.016 5qri915n 0.447330 Siridechadilok_2013, Chang_2011, Grewelle_2020
33 Odom_2009 Poxvirus protein evolution: Family wide assessment of possible horizontal gene transfer events Odom, Mary R.; Curtis Hendrickson, R.; Lefkowitz, Elliot J. 2009 2009-09-30 None N PMC2779260 19464330.0 10.1016/j.virusres.2009.05.006 r397r5zv 0.438167 Mushegian_2018
34 Denner_2017 The porcine virome and xenotransplantation Denner, Joachim 2017 2017-09-06 COMM-USE N PMC5585927 28874166.0 10.1186/s12985-017-0836-z fxa2fagg 0.413894
35 Gardner_2008 Rfam: updates to the RNA families database Gardner, Paul P.; Daub, Jennifer; Tate, John G.; Nawrocki, Eric P.; Kolbe, Diana L.; Lindgreen, Stinus; Wilkinson, Adam C.; Finn, Robert D.; Griffiths-Jones, Sam; Eddy, Sean R.; Bateman, Alex 2008 2008-10-25 NONCOMM N PMC2686503 18953034.0 10.1093/nar/gkn766 wj7yonjw 0.412950 Cheng_2013, O'Leary_2016, Lee_C_2017
36 Renault_2012 Chapter 16 RNA Viruses in Parasitoid Wasps Renault, Sylvaine 2012 2012-12-31 PMC N PMC7150315 10.1016/b978-0-12-384858-1.00016-3 399umczz 0.370852
37 Okafor_2011 Taxonomy, Physiology, and Ecology of Aquatic Microorganisms Okafor, Nduka 2011 2011-03-04 PMC N PMC7120757 10.1007/978-94-007-1460-1_4 ho8k9qji 0.360245 Saitou_2013
38 Tischer_2012 Viral Bacterial Artificial Chromosomes: Generation, Mutagenesis, and Removal of Mini-F Sequences Tischer, B. Karsten; Kaufer, Benedikt B. 2012 2012-02-23 PMC N PMC3303620 22496607.0 10.1155/2012/472537 r1qzmzfe 0.314892
39 Urayama_2016 FLDS: A Comprehensive dsRNA Sequencing Method for Intracellular RNA Virus Surveillance Urayama, Syun-ichi; Takaki, Yoshihiro; Nunoura, Takuro 2016 2016-02-13 COMM-USE N PMC4791113 26877136.0 10.1264/jsme2.me15171 iwfidoer 0.302614