| 1 |
Ho_Y_2011 |
Advances in mass spectrometry for the identification of pathogens |
Ho, Yen‐Peng; Reddy, P. Muralidhar |
2011 |
2011-05-09 |
PMC |
N |
PMC7168406 |
21557290.0 |
10.1002/mas.20320 |
ymw9avlm |
0.980134 |
Hager_2003, Camarasa_2018, Ho_Y_2010 |
|
| 2 |
Ho_Y_2010 |
Identification of Pathogens by Mass Spectrometry |
Ho, Yen-Peng; Reddy, P Muralidhar |
2010 |
2010-04-01 |
PMC |
N |
PMC7108202 |
20167691.0 |
10.1373/clinchem.2009.138867 |
6j05yjjj |
0.900646 |
Yadav_2013 |
Kaleta_2011 |
| 3 |
Kaleta_2011 |
Comparative Analysis of PCR–Electrospray Ionization/Mass Spectrometry (MS) and MALDI-TOF/MS for the Identification of Bacteria and Yeast from Positive Blood Culture Bottles |
Kaleta, Erin J; Clark, Andrew E; Cherkaoui, Abdessalam; Wysocki, Vicki H; Ingram, Elizabeth L; Schrenzel, Jacques; Wolk, Donna M |
2011 |
2011-07-01 |
PMC |
N |
PMC7108470 |
21576270.0 |
10.1373/clinchem.2011.161968 |
j0ntljqm |
0.844786 |
Chang_2011, Urisman_2005 |
|
| 4 |
Fasolo_2009 |
Protein Microarrays |
Fasolo, Joseph; Snyder, Michael |
2009 |
2009-04-01 |
PMC |
N |
PMC7122403 |
19521827.0 |
10.1007/978-1-59745-540-4_12 |
39ix21x1 |
0.822596 |
Cox_E_2015 |
|
| 5 |
Ecker_2008 |
Ibis T5000: a universal biosensor approach for microbiology |
Ecker, David J.; Sampath, Rangarajan; Massire, Christian; Blyn, Lawrence B.; Hall, Thomas A.; Eshoo, Mark W.; Hofstadler, Steven A. |
2008 |
2008-06-03 |
PMC |
N |
PMC7097577 |
18521073.0 |
10.1038/nrmicro1918 |
fduv4yk2 |
0.745140 |
Djikeng_2009 |
|
| 6 |
Berthet_2007 |
Massively parallel pathogen identification using high‐density microarrays |
Berthet, Nicolas; Dickinson, Philip; Filliol, Ingrid; Reinhardt, Anita K.; Batejat, Christophe; Vallaeys, Tatiana; Kong, Katherine A.; Davies, Christopher; Lee, Walter; Zhang, Shenglan; Turpaz, Yaron; Heym, Beate; Coralie, Gilberte; Dacheux, Laurent; Burguière, Ana Maria; Bourhy, Hervé; Old, Iain G.; Manuguerra, Jean‐Claude; Cole, Stewart T.; Kennedy, Giulia C. |
2007 |
2007-11-22 |
None |
N |
PMC3864434 |
21261824.0 |
10.1111/j.1751-7915.2007.00012.x |
f9fhov0y |
0.743405 |
Priest_2012, Chang_2011, Dorrell_2005 |
Li_C_2020, Lee_J_2017 |
| 7 |
Zhu_X_2006 |
ProCAT: a data analysis approach for protein microarrays |
Zhu, Xiaowei; Gerstein, Mark; Snyder, Michael |
2006 |
2006-11-16 |
COMM-USE |
N |
PMC1794587 |
17109749.0 |
10.1186/gb-2006-7-11-r110 |
ps3mnpzq |
0.736140 |
Chang_2011 |
|
| 8 |
Urisman_2005 |
E-Predict: a computational strategy for species identification based on observed DNA microarray hybridization patterns |
Urisman, Anatoly; Fischer, Kael F; Chiu, Charles Y; Kistler, Amy L; Beck, Shoshannah; Wang, David; DeRisi, Joseph L |
2005 |
2005-08-30 |
COMM-USE |
N |
PMC1242213 |
16168085.0 |
10.1186/gb-2005-6-9-r78 |
kqithgfo |
0.717783 |
Chang_2011, Gamermann_2014, Deng_2015 |
|
| 9 |
Hager_2003 |
Recent trends in mass spectrometer development |
Hager, James W. |
2003 |
2003-11-04 |
PMC |
N |
PMC7079868 |
14598011.0 |
10.1007/s00216-003-2287-1 |
o61jmpdf |
0.716406 |
Camarasa_2018, Majchrzykiewicz-Koehorst_2015, Thompson_2007 |
Schlüter_2008 |
| 10 |
Camarasa_2018 |
Chapter Twelve Application of MALDI-TOF Mass Spectrometry in Clinical Virology |
Camarasa, Cristina Gómez; Cobo, Fernando |
2018 |
2018-12-31 |
PMC |
N |
PMC7150354 |
|
10.1016/b978-0-12-814451-0.00012-5 |
izjcyd4d |
0.712875 |
Hager_2003 |
|
| 11 |
Thompson_2007 |
Electrospray ionisation-cleavable tandem nucleic acid mass tag–peptide nucleic acid conjugates: synthesis and applications to quantitative genomic analysis using electrospray ionisation-MS/MS |
Thompson, Andrew; Prescott, Mark; Chelebi, Noorhan; Smith, John; Brown, Tom; Schmidt, Günter |
2007 |
2007-01-26 |
NONCOMM |
N |
PMC1994780 |
17259215.0 |
10.1093/nar/gkl1123 |
gyzbzx53 |
0.667773 |
Hager_2003 |
Kaleta_2011 |
| 12 |
Ye_Y_2010 |
Application of proteomics methods for pathogen discovery |
Ye, Yiming; Mar, Eng-Chun; Tong, Suxiang; Sammons, Scott; Fang, Sunan; Anderson, Larry J.; Wang, Dongxia |
2010 |
2010-01-31 |
PMC |
N |
PMC7119679 |
19751767.0 |
10.1016/j.jviromet.2009.09.002 |
pfzb4is7 |
0.667613 |
Djikeng_2009 |
|
| 13 |
Gibbs_2005 |
Individual sequences in large sets of gene sequences may be distinguished efficiently by combinations of shared sub-sequences |
Gibbs, Mark J; Armstrong, John S; Gibbs, Adrian J |
2005 |
2005-04-08 |
COMM-USE |
N |
PMC1090557 |
15817134.0 |
10.1186/1471-2105-6-90 |
oad4l4fa |
0.577054 |
Chang_2011, Gardner_2004, Phillippy_2009, Lee_C_2017 |
Schlub_2018 |
| 14 |
Fischer_2008 |
Diagnostic Techniques: Microarrays |
Fischer, K.; Urisman, A.; DeRisi, J. |
2008 |
2008-12-31 |
PMC |
N |
PMC7149722 |
|
10.1016/b978-012374410-4.00704-4 |
lgzjnivt |
0.564596 |
Djikeng_2009 |
Wang_2003 |
| 15 |
Slezak_2011 |
Chapter 29 Design of Genomic Signatures for Pathogen Identification and Characterization |
Slezak, Tom; Gardner, Shea; Allen, Jonathan; Vitalis, Elizabeth; Torres, Marisa; Torres, Clinton; Jaing, Crystal |
2011 |
2011-12-31 |
PMC |
N |
PMC7149865 |
|
10.1016/b978-0-12-382006-8.00029-3 |
7avs10yv |
0.526386 |
Gamermann_2014, Chang_2011 |
Lee_J_2017 |
| 16 |
Ambrose_2006 |
Virus discovery by sequence‐independent genome amplification |
Ambrose, Helen E.; Clewley, Jonathan P. |
2006 |
2006-08-23 |
PMC |
N |
PMC7169205 |
16929467.0 |
10.1002/rmv.515 |
amm0hmji |
0.505551 |
Lee_C_2017, Brister_2015, Harel_2019, Smits_2014 |
|
| 17 |
Phillippy_2009 |
Efficient oligonucleotide probe selection for pan-genomic tiling arrays |
Phillippy, Adam M; Deng, Xiangyu; Zhang, Wei; Salzberg, Steven L |
2009 |
2009-09-16 |
COMM-USE |
N |
PMC2753849 |
19758451.0 |
10.1186/1471-2105-10-293 |
g4sjyytr |
0.493839 |
Cheng_2013, Chang_2011, Deng_2015, Whiteford_2005 |
Wang_2010 |
| 18 |
Sampath_2012 |
Comprehensive Biothreat Cluster Identification by PCR/Electrospray-Ionization Mass Spectrometry |
Sampath, Rangarajan; Mulholland, Niveen; Blyn, Lawrence B.; Massire, Christian; Whitehouse, Chris A.; Waybright, Nicole; Harter, Courtney; Bogan, Joseph; Miranda, Mary Sue; Smith, David; Baldwin, Carson; Wolcott, Mark; Norwood, David; Kreft, Rachael; Frinder, Mark; Lovari, Robert; Yasuda, Irene; Matthews, Heather; Toleno, Donna; Housley, Roberta; Duncan, David; Li, Feng; Warren, Robin; Eshoo, Mark W.; Hall, Thomas A.; Hofstadler, Steven A.; Ecker, David J. |
2012 |
2012-06-29 |
COMM-USE |
N |
PMC3387173 |
22768032.0 |
10.1371/journal.pone.0036528 |
w75flrwv |
0.493486 |
Gardner_2004, Chang_2011, Priest_2012, Gamermann_2014 |
|
| 19 |
Majchrzykiewicz-Koehorst_2015 |
Rapid and generic identification of influenza A and other respiratory viruses with mass spectrometry |
Majchrzykiewicz-Koehorst, Joanna A.; Heikens, Esther; Trip, Hein; Hulst, Albert G.; de Jong, Ad L.; Viveen, Marco C.; Sedee, Norbert J.A.; van der Plas, Jan; Coenjaerts, Frank E.J.; Paauw, Armand |
2015 |
2015-03-01 |
PMC |
N |
PMC7113647 |
25500183.0 |
10.1016/j.jviromet.2014.11.014 |
x7qtxaum |
0.492737 |
Hager_2003, Camarasa_2018 |
|
| 20 |
Metsky_2019 |
Capturing sequence diversity in metagenomes with comprehensive and scalable probe design |
Metsky, Hayden C.; Siddle, Katherine J.; Gladden-Young, Adrianne; Qu, James; Yang, David K.; Brehio, Patrick; Goldfarb, Andrew; Piantadosi, Anne; Wohl, Shirlee; Carter, Amber; Lin, Aaron E.; Barnes, Kayla G.; Tully, Damien C.; Corleis, Bjӧrn; Hennigan, Scott; Barbosa-Lima, Giselle; Vieira, Yasmine R.; Paul, Lauren M.; Tan, Amanda L.; Garcia, Kimberly F.; Parham, Leda A.; Odia, Ikponmwosa; Eromon, Philomena; Folarin, Onikepe A.; Goba, Augustine; Simon-Lorière, Etienne; Hensley, Lisa; Balmaseda, Angel; Harris, Eva; Kwon, Douglas S.; Allen, Todd M.; Runstadler, Jonathan A.; Smole, Sandra; Bozza, Fernando A.; Souza, Thiago M. L.; Isern, Sharon; Michael, Scott F.; Lorenzana, Ivette; Gehrke, Lee; Bosch, Irene; Ebel, Gregory; Grant, Donald S.; Happi, Christian T.; Park, Daniel J.; Gnirke, Andreas; Sabeti, Pardis C.; Matranga, Christian B. |
2019 |
2019-02-04 |
None |
N |
PMC6587591 |
30718881.0 |
10.1038/s41587-018-0006-x |
hyg14q69 |
0.471608 |
Chang_2011, Deng_2015, Cheng_2013, Smits_2014 |
Metsky_2018, Li_C_2020 |
| 21 |
Metsky_2018 |
Capturing diverse microbial sequence with comprehensive and scalable probe design |
Hayden C. Metsky; Katherine J. Siddle; Adrianne Gladden-Young; James Qu; David K. Yang; Patrick Brehio; Andrew Goldfarb; Anne Piantadosi; Shirlee Wohl; Amber Carter; Aaron E. Lin; Kayla G. Barnes; Damien C. Tully; Björn Corleis; Scott Hennigan; Giselle Barbosa-Lima; Yasmine R. Vieira; Lauren M. Paul; Amanda L. Tan; Kimberly F. Garcia; Leda A. Parham; Ikponmwonsa Odia; Philomena Eromon; Onikepe A. Folarin; Augustine Goba; Etienne Simon-Lorière; Lisa Hensley; Angel Balmaseda; Eva Harris; Douglas Kwon; Todd M. Allen; Jonathan A. Runstadler; Sandra Smole; Fernando A. Bozza; Thiago M. L. Souza; Sharon Isern; Scott F. Michael; Ivette Lorenzana; Lee Gehrke; Irene Bosch; Gregory Ebel; Donald Grant; Christian Happi; Daniel J. Park; Andreas Gnirke; Pardis C. Sabeti; Christian B. Matranga |
2018 |
2018-03-12 |
BioRxiv |
N |
|
|
10.1101/279570 |
a9lkhayg |
0.466782 |
Chang_2011, Deng_2015, Cheng_2013, Gardner_2004, Brister_2015 |
Metsky_2019, Li_C_2020, Lewandowski_2019 |
| 22 |
Kew_O_1984 |
2 Applications of Oligonucleotide Fingerprinting to the Identification of Viruses |
Kew, Olen M.; Nottay, Baldev K.; Obijeski, John F. |
1984 |
1984-12-31 |
PMC |
N |
|
|
10.1016/b978-0-12-470208-0.50008-6 |
06pj7zkp |
0.463442 |
Chang_2011, Lee_C_2017, Schlub_2018, Harel_2019, Deng_2015 |
|
| 23 |
Gardner_2010 |
A microbial detection array (MDA) for viral and bacterial detection |
Gardner, Shea N; Jaing, Crystal J; McLoughlin, Kevin S; Slezak, Tom R |
2010 |
2010-11-25 |
COMM-USE |
N |
PMC3017867 |
21108826.0 |
10.1186/1471-2164-11-668 |
qi2knswx |
0.453744 |
Gardner_2004, Chang_2011, Smits_2014, Phillippy_2009 |
Wang_2003 |
| 24 |
Jackman_2011 |
The Microbe: The Basics of Structure, Morphology, and Physiology as They Relate to Microbial Characterization and Attribution |
Jackman, Joany |
2011 |
2011-11-19 |
PMC |
N |
PMC7123343 |
|
10.1007/978-1-60327-219-3_2 |
1lb4g8tt |
0.437004 |
Gamermann_2014, Chang_2011 |
|
| 25 |
Dorrell_2005 |
Comparative phylogenomics of pathogenic bacteria by microarray analysis |
Dorrell, Nick; Hinchliffe, Stewart J; Wren, Brendan W |
2005 |
2005-10-31 |
PMC |
N |
PMC7108221 |
16125441.0 |
10.1016/j.mib.2005.08.012 |
16e51s0a |
0.429185 |
Roux_2019 |
|
| 26 |
Bellehumeur_2015 |
Propidium monoazide (PMA) and ethidium bromide monoazide (EMA) improve DNA array and high-throughput sequencing of porcine reproductive and respiratory syndrome virus identification |
Bellehumeur, Christian; Boyle, Brian; Charette, Steve J.; Harel, Josée; L’Homme, Yvan; Masson, Luke; Gagnon, Carl A. |
2015 |
2015-09-15 |
None |
N |
PMC7119533 |
26129867.0 |
10.1016/j.jviromet.2015.06.014 |
7lrmc3qb |
0.427907 |
Oba_M_2018 |
|
| 27 |
Chou_2006 |
Design of microarray probes for virus identification and detection of emerging viruses at the genus level |
Chou, Cheng-Chung; Lee, Te-Tsui; Chen, Chun-Houh; Hsiao, Hsiang-Yun; Lin, Yi-Ling; Ho, Mei-Shang; Yang, Pan-Chyr; Peck, Konan |
2006 |
2006-04-28 |
COMM-USE |
N |
PMC1523220 |
16643672.0 |
10.1186/1471-2105-7-232 |
xz7rzjqv |
0.427841 |
Chang_2011 |
Wang_2003 |
| 28 |
Lee_J_2017 |
Targeted Enrichment for Pathogen Detection and Characterization in Three Felid Species |
Lee, Justin S.; Mackie, Ryan S.; Harrison, Thomas; Shariat, Basir; Kind, Trey; Kehl, Timo; Löchelt, Martin; Boucher, Christina; VandeWoude, Sue |
2017 |
2017-05-23 |
COMM-USE |
N |
PMC5442522 |
28330894.0 |
10.1128/jcm.01463-16 |
qohrnpgq |
0.408486 |
Djikeng_2009, Priest_2012, Urisman_2005, Gardner_2004 |
|
| 29 |
Sampath_2005 |
Rapid Identification of Emerging Pathogens: Coronavirus |
Sampath, Rangarajan; Hofstadler, Steven A.; Blyn, Lawrence B.; Eshoo, Mark W.; Hall, Thomas A.; Massire, Christian; Levene, Harold M.; Hannis, James C.; Harrell, Patina M.; Neuman, Benjamin; Buchmeier, Michael J.; Jiang, Yun; Ranken, Raymond; Drader, Jared J.; Samant, Vivek; Griffey, Richard H.; McNeil, John A.; Crooke, Stanley T.; Ecker, David J. |
2005 |
2005-03-23 |
PMC |
N |
PMC3298233 |
15757550.0 |
10.3201/eid1103.040629 |
ll6lkhyd |
0.391323 |
|
|
| 30 |
Huang_2013 |
An easy operating pathogen microarray (EOPM) platform for rapid screening of vertebrate pathogens |
Huang, Weiwei; Yang, Yinhui; Zhang, Xinlei; Zhao, Changan; Yin, Aihua; Zhang, Xiaozhuang; He, Zhengxin; Jiang, Yongqiang; Zhang, Liang |
2013 |
2013-09-20 |
COMM-USE |
N |
PMC3848773 |
24053492.0 |
10.1186/1471-2334-13-437 |
cxqzac4a |
0.375337 |
Djikeng_2009, Cheng_2013 |
Lee_J_2017 |
| 31 |
Lin_B_2006 |
Broad-spectrum respiratory tract pathogen identification using resequencing DNA microarrays |
Lin, Baochuan; Wang, Zheng; Vora, Gary J.; Thornton, Jennifer A.; Schnur, Joel M.; Thach, Dzung C.; Blaney, Kate M.; Ligler, Adam G.; Malanoski, Anthony P.; Santiago, Jose; Walter, Elizabeth A.; Agan, Brian K.; Metzgar, David; Seto, Donald; Daum, Luke T.; Kruzelock, Russell; Rowley, Robb K.; Hanson, Eric H.; Tibbetts, Clark; Stenger, David A. |
2006 |
2006-03-13 |
None |
N |
PMC1457032 |
16481660.0 |
10.1101/gr.4337206 |
l4b5pezm |
0.367410 |
Djikeng_2009, Brister_2015, Chang_2011, Deng_2015 |
|
| 32 |
Ganova-Raeva_2013 |
Application of mass spectrometry to molecular diagnostics of viral infections |
Ganova-Raeva, Lilia M; Khudyakov, Yury E |
2013 |
2013-05-01 |
PMC |
N |
PMC5831079 |
23638820.0 |
10.1586/erm.13.24 |
qh2kuzdc |
0.357167 |
Djikeng_2009, Yadav_2013 |
Camarasa_2018 |
| 33 |
Osunmakinde_2018 |
Overview of Trends in the Application of Metagenomic Techniques in the Analysis of Human Enteric Viral Diversity in Africa’s Environmental Regimes |
Osunmakinde, Cecilia Oluseyi; Selvarajan, Ramganesh; Sibanda, Timothy; Mamba, Bhekie B; Msagati, Titus A.M |
2018 |
2018-08-14 |
COMM-USE |
N |
PMC6115975 |
30110939.0 |
10.3390/v10080429 |
ea9mzk6e |
0.356060 |
Djikeng_2009, Roux_2019 |
Dacheux_2014 |
| 34 |
Schlüter_2008 |
Mass spectrometry for monitoring protease reactions |
Schlüter, H.; Hildebrand, D.; Gallin, C.; Schulz, A.; Thiemann, J.; Trusch, M. |
2008 |
2008-06-27 |
PMC |
N |
PMC7080141 |
18584157.0 |
10.1007/s00216-008-2213-7 |
ozljm6kl |
0.354059 |
Lee_C_2017 |
|
| 35 |
Niimi_2014 |
Virus purification and enrichment by hydroxyapatite chromatography on a chip |
Niimi, Miyako; Masuda, Taisuke; Kaihatsu, Kunihiro; Kato, Nobuo; Nakamura, Shota; Nakaya, Takaaki; Arai, Fumihito |
2014 |
2014-10-01 |
PMC |
N |
PMC7111472 |
|
10.1016/j.snb.2014.04.011 |
wph0lnzk |
0.342781 |
Djikeng_2009, Siridechadilok_2013, Mizutani_2007 |
|
| 36 |
Briese_2015 |
Virome Capture Sequencing Enables Sensitive Viral Diagnosis and Comprehensive Virome Analysis |
Briese, Thomas; Kapoor, Amit; Mishra, Nischay; Jain, Komal; Kumar, Arvind; Jabado, Omar J.; Lipkin, W. Ian |
2015 |
2015-09-22 |
NONCOMM |
N |
PMC4611031 |
26396248.0 |
10.1128/mbio.01491-15 |
gbguv4r2 |
0.327569 |
Oba_M_2018, Chen_2018 |
Yang_2018, Li_L_2015 |
| 37 |
Sintchenko_2007 |
Pathogen profiling for disease management and surveillance |
Sintchenko, Vitali; Iredell, Jonathan R.; Gilbert, Gwendolyn L. |
2007 |
2007-05-08 |
PMC |
N |
PMC7097369 |
17487146.0 |
10.1038/nrmicro1656 |
71o58gcq |
0.322757 |
|
Miller_2013 |
| 38 |
Renault_2012 |
Chapter 16 RNA Viruses in Parasitoid Wasps |
Renault, Sylvaine |
2012 |
2012-12-31 |
PMC |
N |
PMC7150315 |
|
10.1016/b978-0-12-384858-1.00016-3 |
399umczz |
0.319857 |
|
|
| 39 |
SCHAT_2008 |
16 AVIAN IMMUNOSUPPRESSIVE DISEASES AND IMMUNE EVASION |
SCHAT, KAREL A.; SKINNER, MICHAEL A. |
2008 |
2008-12-31 |
PMC |
N |
PMC7150292 |
|
10.1016/b978-012370634-8.50019-6 |
9qsce2jg |
0.316770 |
|
|
| 40 |
Wong_2004 |
Tracking the Evolution of the SARS Coronavirus Using High-Throughput, High-Density Resequencing Arrays |
Wong, Christopher W.; Albert, Thomas J.; Vega, Vinsensius B.; Norton, Jason E.; Cutler, David J.; Richmond, Todd A.; Stanton, Lawrence W.; Liu, Edison T.; Miller, Lance D. |
2004 |
2004-03-01 |
None |
N |
PMC353227 |
14993206.0 |
10.1101/gr.2141004 |
2d7ekiyh |
0.315274 |
Chang_2011, Harel_2019, Deng_2015, Phillippy_2009 |
|
| 41 |
Cox_E_2015 |
Identification of SUMO E3 Ligase-Specific Substrates Using the HuProt Human Proteome Microarray |
Cox, Eric; Uzoma, Ijeoma; Guzzo, Catherine; Jeong, Jun Seop; Matunis, Michael; Blackshaw, Seth; Zhu, Heng |
2015 |
2015-01-01 |
PMC |
N |
PMC5882486 |
25820740.0 |
10.1007/978-1-4939-2550-6_32 |
g15gtag8 |
0.311078 |
|
|