1 |
Cong_2013 |
Transcriptome analysis of chicken kidney tissues following coronavirus avian infectious bronchitis virus infection |
Cong, Feng; Liu, Xiaoli; Han, Zongxi; Shao, Yuhao; Kong, Xiangang; Liu, Shengwang |
2013 |
2013-10-30 |
COMM-USE |
N |
PMC3870970 |
24168272.0 |
10.1186/1471-2164-14-743 |
trhkv18o |
0.925330 |
Trobaugh_2017, Haasnoot_2010 |
Cao_Z_2011 |
2 |
Barber_2013 |
Identification of avian RIG-I responsive genes during influenza infection |
Barber, Megan RW; Aldridge, Jerry R; Fleming-Canepa, Ximena; Wang, Yong-Dong; Webster, Robert G; Magor, Katharine E |
2013 |
2013-05-01 |
PMC |
N |
PMC3565471 |
23220072.0 |
10.1016/j.molimm.2012.10.038 |
ql7tq62p |
0.837497 |
|
Vanderven_2012 |
3 |
Miao_2015 |
Transcriptional Profiling of Host Gene Expression in Chicken Embryo Fibroblasts Infected with Reticuloendotheliosis Virus Strain HA1101 |
Miao, Ji; Bao, Yanqing; Ye, Jianqiang; Shao, Hongxia; Qian, Kun; Qin, Aijian |
2015 |
2015-05-14 |
COMM-USE |
N |
PMC4431687 |
25973612.0 |
10.1371/journal.pone.0126992 |
7zw2kue9 |
0.812626 |
Trobaugh_2017, Haasnoot_2010, Herbert_2016 |
|
4 |
Zhang_2006 |
Signature patterns revealed by microarray analyses of mice infected with influenza virus A and Streptococcus pneumoniae |
Zhang, Hong; Su, Yan A.; Hu, Peisheng; Yang, Jun; Zheng, Biyu; Wu, Peter; Peng, Jingzhong; Tang, Yanlin; Zhang, Lin |
2006 |
2006-07-31 |
PMC |
N |
PMC7110625 |
16797204.0 |
10.1016/j.micinf.2006.04.018 |
78xll47t |
0.809218 |
Trobaugh_2017, Haasnoot_2010, Herbert_2016 |
|
5 |
Dar_A_2005 |
Transcriptional analysis of avian embryonic tissues following infection with avian infectious bronchitis virus |
Dar, Arshud; Munir, Shirin; Vishwanathan, Satya; Manuja, Anju; Griebel, Philip; Tikoo, Suresh; Townsend, Hugh; Potter, Andrew; Kapur, Vivek; Babiuk, Lorne A. |
2005 |
2005-06-30 |
PMC |
N |
PMC7114260 |
15845254.0 |
10.1016/j.virusres.2005.01.006 |
71trm8pq |
0.799950 |
Trobaugh_2017, Herbert_2016 |
|
6 |
Vanderven_2012 |
Avian influenza rapidly induces antiviral genes in duck lung and intestine |
Vanderven, Hillary A.; Petkau, Kristina; Ryan-Jean, Kieran E. E.; Aldridge, Jerry R.; Webster, Robert G.; Magor, Katharine E. |
2012 |
2012-07-01 |
PMC |
N |
PMC3358531 |
22534314.0 |
10.1016/j.molimm.2012.03.034 |
dh2hxqsv |
0.745408 |
Barber_2013 |
Barber_2013 |
7 |
Chang_2011 |
Next-Generation Sequencing Reveals HIV-1-Mediated Suppression of T Cell Activation and RNA Processing and Regulation of Noncoding RNA Expression in a CD4(+) T Cell Line |
Chang, Stewart T.; Sova, Pavel; Peng, Xinxia; Weiss, Jeffrey; Law, G. Lynn; Palermo, Robert E.; Katze, Michael G. |
2011 |
2011-09-20 |
NONCOMM |
N |
PMC3175625 |
21933919.0 |
10.1128/mbio.00134-11 |
zyzgk2z3 |
0.725176 |
Trobaugh_2017, Herbert_2016 |
|
8 |
Chasman_2016 |
Integrating Transcriptomic and Proteomic Data Using Predictive Regulatory Network Models of Host Response to Pathogens |
Chasman, Deborah; Walters, Kevin B.; Lopes, Tiago J. S.; Eisfeld, Amie J.; Kawaoka, Yoshihiro; Roy, Sushmita |
2016 |
2016-07-12 |
COMM-USE |
N |
PMC4942116 |
27403523.0 |
10.1371/journal.pcbi.1005013 |
zlqh436d |
0.722880 |
Trobaugh_2017, Haasnoot_2010 |
Trypsteen_2016 |
9 |
Liu_X_2015 |
The Porcine MicroRNA Transcriptome Response to Transmissible Gastroenteritis Virus Infection |
Liu, Xiao; Zhu, Ling; Liao, Shan; Xu, Zhiwen; Zhou, Yuancheng |
2015 |
2015-03-17 |
COMM-USE |
N |
PMC4363316 |
25781021.0 |
10.1371/journal.pone.0120377 |
su6mcaf1 |
0.707495 |
Trobaugh_2017, Haasnoot_2010, Herbert_2016 |
Liu_X_2018, Liui_2020 |
10 |
Yu_G_2018 |
Comparative Transcriptomic Analysis of Immune-Related Gene Expression in Duck Embryo Fibroblasts Following Duck Tembusu Virus Infection |
Yu, Guanliu; Lin, Yun; Tang, Yi; Diao, Youxiang |
2018 |
2018-08-08 |
COMM-USE |
N |
PMC6121397 |
30096804.0 |
10.3390/ijms19082328 |
254pm5cr |
0.694492 |
|
|
11 |
Xiaoyang_2013 |
Global analysis of differential expressed genes in ECV304 Endothelial-like cells infected with human cytomegalovirus |
Xiaoyang, Mo; Haiquan, Z; Huanying, Z; Changwen, K; Wenling, Z; Yanyang, Tu; Yongsheng, Z |
2013 |
2013-09-05 |
PMC |
N |
PMC3824489 |
24235919.0 |
10.4314/ahs.v13i2.6 |
73j6vpol |
0.693508 |
Trobaugh_2017, Haasnoot_2010, Herbert_2016 |
Zhang_2014, Liu_W_2018, Zhang_2016, Wang_2009 |
12 |
Zhang_2014 |
Differential expressed genes in ECV304 Endothelial-like Cells infected with Human Cytomegalovirus |
Zhang, Yali; Ma, Wenli; Mo, Xiaoyang; Zhao, Haiquan; Zheng, Huanying; Ke, Changwen; Zheng, Wenling; Tu, Yanyang; Zhang, Yongsheng |
2014 |
2014-01-23 |
PMC |
N |
PMC4056481 |
24940306.0 |
10.4314/ahs.v13i4.2 |
8lurg2tx |
0.686317 |
Trobaugh_2017, Haasnoot_2010, Herbert_2016 |
Xiaoyang_2013, Zhang_2016, Wang_2009 |
13 |
Lederer_2006 |
Distinct cellular responses differentiating alcohol- and hepatitis C virus-induced liver cirrhosis |
Lederer, Sharon L; Walters, Kathie-Anne; Proll, Sean; Paeper, Bryan; Robinzon, Shahar; Boix, Loreto; Fausto, Nelson; Bruix, Jordi; Katze, Michael G |
2006 |
2006-11-22 |
COMM-USE |
N |
PMC1676004 |
17121680.0 |
10.1186/1743-422x-3-98 |
phkoh08y |
0.681751 |
Trobaugh_2017, Haasnoot_2010, Herbert_2016 |
|
14 |
Chen_2019 |
Profile analysis of circRNAs induced by porcine endemic diarrhea virus infection in porcine intestinal epithelial cells |
Chen, Jianing; Wang, Haiwen; Jin, Li; Wang, Liyuan; Huang, Xin; Chen, Wenwen; Yan, Miaomiao; Liu, Guangliang |
2019 |
2019-01-15 |
None |
N |
PMC7112103 |
30530223.0 |
10.1016/j.virol.2018.11.014 |
j7pde2la |
0.677538 |
Trobaugh_2017, Haasnoot_2010 |
Liui_2020 |
15 |
Josset_2014 |
Annotation of long non-coding RNAs expressed in Collaborative Cross founder mice in response to respiratory virus infection reveals a new class of interferon-stimulated transcripts |
Josset, Laurence; Tchitchek, Nicolas; Gralinski, Lisa E; Ferris, Martin T; Eisfeld, Amie J; Green, Richard R; Thomas, Matthew J; Tisoncik-Go, Jennifer; Schroth, Gary P; Kawaoka, Yoshihiro; Pardo-Manuel de Villena, Fernando; Baric, Ralph S; Heise, Mark T; Peng, Xinxia; Katze, Michael G |
2014 |
2014-06-12 |
None |
N |
PMC4179962 |
24922324.0 |
10.4161/rna.29442 |
qwwmf4p1 |
0.662318 |
Trobaugh_2017, Haasnoot_2010, Herbert_2016, Atianand_2014 |
Trypsteen_2016, Liu_W_2018, Peng_2011 |
16 |
Reza_Etemadi_2017 |
Gene expression patterns induced at different stages of rhinovirus infection in human alveolar epithelial cells |
Reza Etemadi, Mohammad; Ling, King-Hwa; Zainal Abidin, Shahidee; Chee, Hui-Yee; Sekawi, Zamberi |
2017 |
2017-05-30 |
COMM-USE |
N |
PMC5448745 |
28558071.0 |
10.1371/journal.pone.0176947 |
w77jb4s8 |
0.657779 |
Trobaugh_2017, Haasnoot_2010 |
Ding_2012 |
17 |
Peng_2010 |
Unique Signatures of Long Noncoding RNA Expression in Response to Virus Infection and Altered Innate Immune Signaling |
Peng, Xinxia; Gralinski, Lisa; Armour, Christopher D.; Ferris, Martin T.; Thomas, Matthew J.; Proll, Sean; Bradel-Tretheway, Birgit G.; Korth, Marcus J.; Castle, John C.; Biery, Matthew C.; Bouzek, Heather K.; Haynor, David R.; Frieman, Matthew B.; Heise, Mark; Raymond, Christopher K.; Baric, Ralph S.; Katze, Michael G. |
2010 |
2010-10-26 |
NONCOMM |
N |
PMC2962437 |
20978541.0 |
10.1128/mbio.00206-10 |
iftvp09u |
0.649339 |
Trobaugh_2017, Herbert_2016, Haasnoot_2010 |
|
18 |
Ma_R_2014 |
Proteome Profile of Swine Testicular Cells Infected with Porcine Transmissible Gastroenteritis Coronavirus |
Ma, Ruili; Zhang, Yanming; Liu, Haiquan; Ning, Pengbo |
2014 |
2014-10-21 |
COMM-USE |
N |
PMC4204940 |
25333634.0 |
10.1371/journal.pone.0110647 |
llnqzkqt |
0.647317 |
Trobaugh_2017, Haasnoot_2010 |
Ding_2012 |
19 |
Liu_H_2017 |
Comparative transcriptome analysis reveals induction of apoptosis in chicken kidney cells associated with the virulence of nephropathogenic infectious bronchitis virus |
Liu, Hui; Yang, Xin; Zhang, Zhikun; Li, Jianan; Zou, Wencheng; Zeng, Fanya; Wang, Hongning |
2017 |
2017-12-31 |
PMC |
N |
PMC7126322 |
29174688.0 |
10.1016/j.micpath.2017.11.031 |
6zc603yw |
0.633841 |
|
Cong_2013, Cao_Z_2011 |
20 |
Juranic_Lisnic_2013 |
Dual Analysis of the Murine Cytomegalovirus and Host Cell Transcriptomes Reveal New Aspects of the Virus-Host Cell Interface |
Juranic Lisnic, Vanda; Babic Cac, Marina; Lisnic, Berislav; Trsan, Tihana; Mefferd, Adam; Das Mukhopadhyay, Chitrangada; Cook, Charles H.; Jonjic, Stipan; Trgovcich, Joanne |
2013 |
2013-09-26 |
COMM-USE |
N |
PMC3784481 |
24086132.0 |
10.1371/journal.ppat.1003611 |
jvl63652 |
0.633695 |
Trobaugh_2017, Haasnoot_2010, Herbert_2016 |
Trypsteen_2016 |
21 |
Cho_W_2012 |
Genome-wide expression profiling shows transcriptional reprogramming in Fusarium graminearum by Fusarium graminearum virus 1-DK21 infection |
Cho, Won Kyong; Yu, Jisuk; Lee, Kyung-Mi; Son, Moonil; Min, Kyunghun; Lee, Yin-Won; Kim, Kook-Hyung |
2012 |
2012-05-06 |
COMM-USE |
N |
PMC3478160 |
22559730.0 |
10.1186/1471-2164-13-173 |
kf9m4zho |
0.614677 |
Trobaugh_2017, Haasnoot_2010, Herbert_2016 |
Thibivilliers_2009 |
22 |
GU_S_2014 |
Aberrant expression of long noncoding RNAs in chronic thromboembolic pulmonary hypertension |
GU, SONG; LI, GUANGHUI; ZHANG, XITAO; YAN, JUN; GAO, JIE; AN, XIANGGUANG; LIU, YAN; SU, PIXIONG |
2014 |
2014-12-17 |
COMM-USE |
N |
PMC4337719 |
25522749.0 |
10.3892/mmr.2014.3102 |
vldknsrm |
0.610797 |
Trobaugh_2017, Haasnoot_2010, Atianand_2014, Wang_2007, Trypsteen_2016 |
Trypsteen_2016, Liui_2020, Liu_W_2018, Li_Y_2017 |
23 |
Liui_2020 |
Comprehensive Genomic Characterization Analysis of lncRNAs in Cells With Porcine Delta Coronavirus Infection |
Liui, Junli; Wang, Fangfang; Du, Liuyang; Li, Juan; Yu, Tianqi; Jin, Yulan; Yan, Yan; Zhou, Jiyong; Gu, Jinyan |
2020 |
2020-01-01 |
COMM-USE |
N |
PMC6999024 |
32063887.0 |
10.3389/fmicb.2019.03036 |
fmb5nyxu |
0.607242 |
Trobaugh_2017, Haasnoot_2010, Zhang_2013, Atianand_2014 |
Tang_2019, Trypsteen_2016, Chen_2019, Liu_X_2015 |
24 |
Lee_J_2012 |
Genome-wide host responses against infectious laryngotracheitis virus vaccine infection in chicken embryo lung cells |
Lee, Jeongyoon; Bottje, Walter G; Kong, Byung-Whi |
2012 |
2012-04-24 |
COMM-USE |
N |
PMC3353197 |
22530940.0 |
10.1186/1471-2164-13-143 |
u1uvnlk2 |
0.602073 |
|
|
25 |
Nam_G_2018 |
Gene expression profiles alteration after infection of virus, bacteria, and parasite in the Olive flounder (Paralichthys olivaceus) |
Nam, Gyu-Hwi; Mishra, Anshuman; Gim, Jeong-An; Lee, Hee-Eun; Jo, Ara; Yoon, Dahye; Kim, Ahran; Kim, Woo-Jin; Ahn, Kung; Kim, Do-Hyung; Kim, Suhkmann; Cha, Hee-Jae; Choi, Yung Hyun; Park, Chan-Il; Kim, Heui-Soo |
2018 |
2018-12-24 |
COMM-USE |
N |
PMC6305387 |
30584247.0 |
10.1038/s41598-018-36342-y |
82573enr |
0.600030 |
Trobaugh_2017, Haasnoot_2010 |
Xing_2019, Harun_2013 |
26 |
VanLeuven_2017 |
Lung epithelial cells have virus-specific and shared gene expression responses to infection by diverse respiratory viruses |
VanLeuven, James T.; Ridenhour, Benjamin J.; Gonzalez, Andres J.; Miller, Craig R.; Miura, Tanya A. |
2017 |
2017-06-02 |
COMM-USE |
N |
PMC5456070 |
28575086.0 |
10.1371/journal.pone.0178408 |
b831y105 |
0.596598 |
Trobaugh_2017 |
VanLeuven_2016 |
27 |
Gardiner_2013 |
Gene expression analysis reveals schizophrenia-associated dysregulation of immune pathways in peripheral blood mononuclear cells |
Gardiner, Erin J.; Cairns, Murray J.; Liu, Bing; Beveridge, Natalie J.; Carr, Vaughan; Kelly, Brian; Scott, Rodney J.; Tooney, Paul A. |
2013 |
2013-04-30 |
PMC |
N |
PMC7094548 |
23218666.0 |
10.1016/j.jpsychires.2012.11.007 |
qnwgiqfn |
0.576121 |
Wang_2007, Trobaugh_2017, Haasnoot_2010, Yu_H_2007 |
Liu_W_2018 |
28 |
VanLeuven_2016 |
Lung epithelial cells have virus-specific and shared gene expression responses to infection by diverse respiratory viruses |
James T. VanLeuven; Benjamin J. Ridenhour; Craig R. Miller; Tanya A. Miura |
2016 |
2016-12-02 |
BioRxiv |
N |
|
|
10.1101/090936 |
iedh762s |
0.567393 |
Trobaugh_2017 |
VanLeuven_2017 |
29 |
Ebenezer_2019 |
Genetic deletion of Sphk2 confers protection against Pseudomonas aeruginosa mediated differential expression of genes related to virulent infection and inflammation in mouse lung |
Ebenezer, David L.; Fu, Panfeng; Krishnan, Yashaswin; Maienschein-Cline, Mark; Hu, Hong; Jung, Segun; Madduri, Ravi; Arbieva, Zarema; Harijith, Anantha; Natarajan, Viswanathan |
2019 |
2019-12-16 |
COMM-USE |
N |
PMC6916461 |
31842752.0 |
10.1186/s12864-019-6367-9 |
4ctnup7c |
0.567117 |
Trobaugh_2017, Haasnoot_2010, Herbert_2016 |
|
30 |
Wang_2019 |
Identification of DNA methylation regulated novel host genes relevant to inhibition of virus replication in porcine PK15 cell using double stranded RNA mimics and DNA methyltransferase inhibitor |
Wang, Xiaoshuo; Ao, Hong; Song, Minyan; Bai, Lijing; He, Weiyong; Wang, Chuduan; Yu, Ying |
2019 |
2019-12-31 |
None |
N |
PMC7125705 |
30315899.0 |
10.1016/j.ygeno.2018.09.020 |
cwlo3qpg |
0.567057 |
Trobaugh_2017, Haasnoot_2010, Herbert_2016 |
Trypsteen_2016, Zhong_2017 |
31 |
Cao_Z_2011 |
Proteomic analysis of chicken embryonic trachea and kidney tissues after infection in ovo by avian infectious bronchitis coronavirus |
Cao, Zhongzan; Han, Zongxi; Shao, Yuhao; Geng, Heyuan; Kong, Xiangang; Liu, Shengwang |
2011 |
2011-03-08 |
COMM-USE |
N |
PMC3060854 |
21385394.0 |
10.1186/1477-5956-9-11 |
6io780dm |
0.565679 |
Trobaugh_2017 |
Ding_2012 |
32 |
Peng_2011 |
Integrative Deep Sequencing of the Mouse Lung Transcriptome Reveals Differential Expression of Diverse Classes of Small RNAs in Response to Respiratory Virus Infection |
Peng, Xinxia; Gralinski, Lisa; Ferris, Martin T.; Frieman, Matthew B.; Thomas, Matthew J.; Proll, Sean; Korth, Marcus J.; Tisoncik, Jennifer R.; Heise, Mark; Luo, Shujun; Schroth, Gary P.; Tumpey, Terrence M.; Li, Chengjun; Kawaoka, Yoshihiro; Baric, Ralph S.; Katze, Michael G. |
2011 |
2011-11-15 |
NONCOMM |
N |
PMC3221602 |
22086488.0 |
10.1128/mbio.00198-11 |
hzh5tyoo |
0.565065 |
Trobaugh_2017, Herbert_2016, Haasnoot_2010 |
|
33 |
Chen_2009 |
Understanding Haemophilus parasuis infection in porcine spleen through a transcriptomics approach |
Chen, Hongbo; Li, Changchun; Fang, Mingdi; Zhu, Mengjin; Li, Xinyun; Zhou, Rui; Li, Kui; Zhao, Shuhong |
2009 |
2009-02-05 |
COMM-USE |
N |
PMC2660370 |
19196461.0 |
10.1186/1471-2164-10-64 |
kyw4ptr2 |
0.562962 |
Haasnoot_2010, Trobaugh_2017, Wang_2007, Atianand_2014, Juranic_Lisnic_2013 |
|
34 |
Song_2015 |
Transmissible Gastroenteritis Virus (TGEV) Infection Alters the Expression of Cellular MicroRNA Species That Affect Transcription of TGEV Gene 7 |
Song, Xiangjun; Zhao, Xiaomin; Huang, Yong; Xiang, Hailing; Zhang, Wenlong; Tong, Dewen |
2015 |
2015-06-07 |
PMC |
N |
PMC4495409 |
26157346.0 |
10.7150/ijbs.11585 |
5vj3oasa |
0.560052 |
Trobaugh_2017, Haasnoot_2010, Herbert_2016 |
|
35 |
Reghunathan_2005 |
Expression profile of immune response genes in patients with Severe Acute Respiratory Syndrome |
Reghunathan, Renji; Jayapal, Manikandan; Hsu, Li-Yang; Chng, Hiok-Hee; Tai, Dessmon; Leung, Bernard P; Melendez, Alirio J |
2005 |
2005-01-18 |
COMM-USE |
Y |
PMC546205 |
15655079.0 |
10.1186/1471-2172-6-2 |
ic4d9dhk |
0.559207 |
Trobaugh_2017, Haasnoot_2010, Herbert_2016 |
Hu_W_2012 |
36 |
Trypsteen_2016 |
Differential expression of lncRNAs during the HIV replication cycle: an underestimated layer in the HIV-host interplay |
Trypsteen, Wim; Mohammadi, Pejman; Van Hecke, Clarissa; Mestdagh, Pieter; Lefever, Steve; Saeys, Yvan; De Bleser, Pieter; Vandesompele, Jo; Ciuffi, Angela; Vandekerckhove, Linos; De Spiegelaere, Ward |
2016 |
2016-10-26 |
None |
N |
PMC5080576 |
27782208.0 |
10.1038/srep36111 |
er3kkn9m |
0.558385 |
Trobaugh_2017, Haasnoot_2010, Atianand_2014, Herbert_2016 |
Liu_W_2018 |
37 |
Tong_2017 |
Quantitative Analysis of Cellular Proteome Alterations in CDV-Infected Mink Lung Epithelial Cells |
Tong, Mingwei; Yi, Li; Sun, Na; Cheng, Yuening; Cao, Zhigang; Wang, Jianke; Li, Shuang; Lin, Peng; Sun, Yaru; Cheng, Shipeng |
2017 |
2017-12-22 |
COMM-USE |
N |
PMC5743685 |
29312244.0 |
10.3389/fmicb.2017.02564 |
mu9jt1ul |
0.557871 |
Trobaugh_2017 |
Ding_2012 |
38 |
Cong_2017 |
Global miRNA expression profiling of domestic cat livers following acute Toxoplasma gondii infection |
Cong, Wei; Zhang, Xiao-Xuan; He, Jun-Jun; Li, Fa-Cai; Elsheikha, Hany M.; Zhu, Xing-Quan |
2017 |
2017-03-10 |
COMM-USE |
N |
PMC5421954 |
28424428.0 |
10.18632/oncotarget.16108 |
05tshufp |
0.552093 |
Trobaugh_2017, Haasnoot_2010, Wang_2007, Atianand_2014, Herbert_2016 |
Xun_M_2015, Liui_2020, Liu_W_2018, Liu_X_2015 |
39 |
Ma_X_2019 |
Identification and analysis of long non-coding RNAs that are involved in inflammatory process in response to transmissible gastroenteritis virus infection |
Ma, Xuelian; Zhao, Xiaomin; Wang, Kaili; Tang, Xiaoyi; Guo, Jianxiong; Mi, Mi; Qi, Yanping; Chang, Lingling; Huang, Yong; Tong, Dewen |
2019 |
2019-11-04 |
COMM-USE |
N |
PMC6829948 |
31684870.0 |
10.1186/s12864-019-6156-5 |
k62mtr9j |
0.551268 |
Trobaugh_2017, Herbert_2016, Haasnoot_2010, Zhang_2013 |
Liui_2020, Liu_W_2018, Trypsteen_2016 |
40 |
Wang_2016 |
Comparative Transcriptome Analysis of Bombyx mori (Lepidoptera) Larval Midgut Response to BmNPV in Susceptible and Near-Isogenic Resistant Strains |
Wang, Xue-Yang; Yu, Hai-Zhong; Geng, Lei; Xu, Jia-Ping; Yu, Dong; Zhang, Shang-Zhi; Ma, Yan; Fei, Dong-Qiong |
2016 |
2016-05-11 |
COMM-USE |
N |
PMC4864234 |
27168061.0 |
10.1371/journal.pone.0155341 |
z1b7pj3s |
0.549648 |
Trobaugh_2017, Haasnoot_2010, Herbert_2016 |
Thibivilliers_2009 |
41 |
Chen_2019 |
Porcine endemic diarrhea virus infection regulates long noncoding RNA expression |
Chen, Jianing; Zhang, Chenyu; Zhang, Na; Liu, Guangliang |
2019 |
2019-01-15 |
PMC |
N |
PMC7112091 |
30471453.0 |
10.1016/j.virol.2018.11.007 |
vourst8d |
0.549577 |
Trobaugh_2017, Haasnoot_2010, Herbert_2016 |
Liui_2020, Trypsteen_2016, Liu_W_2018, Tang_2019 |
42 |
Sun_P_2019 |
Transcriptomic analysis of small intestinal mucosa from porcine epidemic diarrhea virus infected piglets |
Sun, Pei; Fahd, Qarih; Li, Yezhen; Sun, Yao; Li, Jie; Qaria, Majjid A.; He, Zhan Song; Fan, Yuzhen; Zhang, Qiang; Xu, Qianming; Yin, Zongjun; Xu, Xingang; Li, Yu |
2019 |
2019-07-31 |
PMC |
N |
PMC7125762 |
31026494.0 |
10.1016/j.micpath.2019.04.033 |
ior76hux |
0.548885 |
Trobaugh_2017, Haasnoot_2010, Juranic_Lisnic_2013, Liu_X_2015 |
|
43 |
Xun_M_2015 |
Differential expression of miRNAs in enterovirus 71-infected cells |
Xun, Meng; Ma, Chao-Feng; Du, Quan-Li; Ji, Yan-Hong; Xu, Ji-Ru |
2015 |
2015-04-10 |
COMM-USE |
N |
PMC4416288 |
25889836.0 |
10.1186/s12985-015-0288-2 |
iumo7ioe |
0.546027 |
Trobaugh_2017, Haasnoot_2010, Atianand_2014 |
Liu_X_2015 |
44 |
Zhao_2016 |
Distinct temporal changes in host cell lncRNA expression during the course of an adenovirus infection |
Zhao, Hongxing; Chen, Maoshan; Lind, Sara Bergström; Pettersson, Ulf |
2016 |
2016-05-31 |
PMC |
N |
PMC7111612 |
27003248.0 |
10.1016/j.virol.2016.02.017 |
jx23qa3v |
0.544085 |
Trobaugh_2017, Wang_2007, Haasnoot_2010, Herbert_2016, Atianand_2014 |
Trypsteen_2016, Liui_2020 |
45 |
Wang_2018 |
Transcriptomic insights into the early host-pathogen interaction of cat intestine with Toxoplasma gondii |
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2018 |
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COMM-USE |
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PMC6236892 |
30428922.0 |
10.1186/s13071-018-3179-8 |
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Trobaugh_2017, Wang_2007, Yu_H_2007, Haasnoot_2010 |
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Transcriptome analysis of avian reovirus-mediated changes in gene expression of normal chicken fibroblast DF-1 cells |
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2017 |
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COMM-USE |
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PMC5702118 |
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10.1186/s12864-017-4310-5 |
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Trobaugh_2017, Haasnoot_2010, Wang_2007 |
Chen_2014 |
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Cann_2016 |
Chapter 5 Expression |
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2016-12-31 |
PMC |
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Potential mechanism and drug candidates for sepsis-induced acute lung injury |
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2018 |
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NONCOMM |
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PMC5952104 |
29805488.0 |
10.3892/etm.2018.6001 |
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Haasnoot_2010, Wang_2007, Trobaugh_2017, Atianand_2014 |
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Global Mapping of H3K4 Trimethylation (H3K4me3) and Transcriptome Analysis Reveal Genes Involved in the Response to Epidemic Diarrhea Virus Infections in Pigs |
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2019 |
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COMM-USE |
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PMC6719071 |
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10.3390/ani9080523 |
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Trobaugh_2017, Haasnoot_2010, Bedadala_2007, Herbert_2016 |
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Microarray analysis of infectious bronchitis virus infection of chicken primary dendritic cells |
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COMM-USE |
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PMC6615177 |
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Type I Interferon Regulates the Expression of Long Non-Coding RNAs |
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COMM-USE |
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PMC4222131 |
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10.3389/fimmu.2014.00548 |
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Trobaugh_2017, Haasnoot_2010, Herbert_2016, Wang_2007 |
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lncRNA-mediated regulation of the interferon response |
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2016 |
2016-01-02 |
None |
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PMC4744491 |
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10.1016/j.virusres.2015.09.023 |
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Trobaugh_2017, Herbert_2016, Haasnoot_2010 |
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Reactomes of Porcine Alveolar Macrophages Infected with Porcine Reproductive and Respiratory Syndrome Virus |
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COMM-USE |
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PMC3602036 |
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10.1371/journal.pone.0059229 |
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Haasnoot_2010, Trobaugh_2017, Chasman_2016 |
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PMC3415036 |
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10.1258/ebm.2010.010272 |
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Trobaugh_2017, Haasnoot_2010 |
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Transcriptome Analysis Reveals Dynamic Gene Expression Profiles in Porcine Alveolar Macrophages in Response to the Chinese Highly Pathogenic Porcine Reproductive and Respiratory Syndrome Virus |
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COMM-USE |
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PMC5949201 |
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10.1155/2018/1538127 |
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Trobaugh_2017, Herbert_2016, Haasnoot_2010 |
Liui_2020 |
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Transcriptome altered by latent human cytomegalovirus infection on THP-1 cells using RNA-seq |
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2016 |
2016-12-05 |
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PMC7126988 |
27623506.0 |
10.1016/j.gene.2016.09.014 |
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Trobaugh_2017, Haasnoot_2010, Zhang_2013, Herbert_2016, Wang_2007 |
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Bioinformatics Analysis of Genes and Pathways of CD11b(+)/Ly6C(intermediate) Macrophages after Renal Ischemia-Reperfusion Injury |
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2018 |
2018-03-15 |
PMC |
N |
PMC7089064 |
30074154.0 |
10.1007/s11596-018-1848-7 |
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Haasnoot_2010, Trobaugh_2017, Wang_2007, Atianand_2014 |
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Expression Profiles of mRNA and lncRNA in HCT-8 Cells Infected With Cryptosporidium parvum IId Subtype |
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2018 |
2018-06-27 |
COMM-USE |
N |
PMC6036261 |
30013528.0 |
10.3389/fmicb.2018.01409 |
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Trobaugh_2017, Haasnoot_2010, Wang_2007, Herbert_2016 |
Liui_2020, Trypsteen_2016, Liu_W_2018 |
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MicroRNA transcriptome analysis of porcine vital organ responses to immunosuppressive porcine cytomegalovirus infection |
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2018 |
2018-01-18 |
COMM-USE |
N |
PMC5774105 |
29347945.0 |
10.1186/s12985-018-0922-x |
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Trobaugh_2017, Haasnoot_2010, Herbert_2016 |
Liu_X_2015 |
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Microarray Analysis Identifies the Potential Role of Long Non-Coding RNA in Regulating Neuroinflammation during Japanese Encephalitis Virus Infection |
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2017 |
2017-09-29 |
COMM-USE |
N |
PMC5626832 |
29033949.0 |
10.3389/fimmu.2017.01237 |
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Trobaugh_2017, Haasnoot_2010, Herbert_2016, Atianand_2014 |
Trypsteen_2016, Liu_W_2018, Liui_2020 |
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Quantitative Proteomic Analysis of Duck Ovarian Follicles Infected with Duck Tembusu Virus by Label-Free LC-MS |
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2016 |
2016-03-31 |
COMM-USE |
N |
PMC4815560 |
27066001.0 |
10.3389/fmicb.2016.00463 |
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Trobaugh_2017, Haasnoot_2010 |
Ding_2012, Cao_Z_2011 |
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Proteomic analysis of sheep primary testicular cells infected with bluetongue virus |
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2016 |
2016-04-13 |
PMC |
N |
PMC7168089 |
26989863.0 |
10.1002/pmic.201500275 |
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Trobaugh_2017, Haasnoot_2010 |
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Microarray analysis of long non-coding RNA expression profiles uncovers a Toxoplasma-induced negative regulation of host immune signaling |
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2018 |
2018-03-12 |
COMM-USE |
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PMC5848448 |
29530077.0 |
10.1186/s13071-018-2697-8 |
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Trobaugh_2017, Herbert_2016, Haasnoot_2010 |
Trypsteen_2016, Liui_2020, Zhang_2016 |
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Transcriptional profiling of feline infectious peritonitis virus infection in CRFK cells and in PBMCs from FIP diagnosed cats |
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2013 |
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COMM-USE |
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PMC3829811 |
24209771.0 |
10.1186/1743-422x-10-329 |
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Wang_2009 |
Mehrbod_2014 |
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Detection and characterization of microRNA expression profiling and its target genes in response to canine parvovirus in Crandell Reese Feline Kidney cells |
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2020 |
2020-02-12 |
COMM-USE |
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PMC7023829 |
32095352.0 |
10.7717/peerj.8522 |
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Trobaugh_2017, Haasnoot_2010, Atianand_2014, Zhang_2013 |
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Gene Expression Profiling in Cells with Enhanced γ-Secretase Activity |
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COMM-USE |
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PMC2739295 |
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10.1371/journal.pone.0006952 |
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Allele-Specific Expression of CD4(+) T Cells in Response to Marek’s Disease Virus Infection |
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COMM-USE |
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PMC6770979 |
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10.3390/genes10090718 |
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Haasnoot_2010, Trobaugh_2017 |
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Dysregulation of Long Non-coding RNA (lncRNA) Genes and Predicted lncRNA-Protein Interactions during Zika Virus Infection |
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BioRxiv |
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Trobaugh_2017, Haasnoot_2010, Herbert_2016, Atianand_2014 |
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iTRAQ-based high-throughput proteomics analysis reveals alterations of plasma proteins in patients infected with human bocavirus |
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2019 |
2019-11-21 |
COMM-USE |
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PMC6872134 |
31751365.0 |
10.1371/journal.pone.0225261 |
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Trobaugh_2017, Haasnoot_2010 |
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Identification and characterization of a long non-coding RNA up-regulated during HIV-1 infection |
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2017 |
2017-11-30 |
None |
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PMC5623643 |
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10.1016/j.virol.2017.08.006 |
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Trobaugh_2017, Haasnoot_2010, Wang_2007, Herbert_2016 |
Trypsteen_2016, Liu_W_2018 |
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Changes in the Transcriptome of Human Astrocytes Accompanying Oxidative Stress-Induced Senescence |
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2016 |
2016-08-31 |
COMM-USE |
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PMC5005348 |
27630559.0 |
10.3389/fnagi.2016.00208 |
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Haasnoot_2010, Trobaugh_2017 |
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Next-Generation Sequencing of Small RNAs from HIV-Infected Cells Identifies Phased microRNA Expression Patterns and Candidate Novel microRNAs Differentially Expressed upon Infection |
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2013 |
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NONCOMM |
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PMC3560529 |
23386435.0 |
10.1128/mbio.00549-12 |
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Trobaugh_2017, Haasnoot_2010, Herbert_2016 |
Trypsteen_2016 |
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Transcriptome analysis of responses to bluetongue virus infection in Aedes albopictus cells |
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2019 |
2019-06-10 |
COMM-USE |
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PMC6558886 |
31182015.0 |
10.1186/s12866-019-1498-3 |
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Trobaugh_2017 |
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Transcriptome Analysis of the Initial Stage of Acute WSSV Infection Caused by Temperature Change |
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2014 |
2014-03-04 |
COMM-USE |
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PMC3942461 |
24595043.0 |
10.1371/journal.pone.0090732 |
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Trobaugh_2017, Haasnoot_2010, Herbert_2016, Wang_2007 |
Thibivilliers_2009 |
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Gene-expression reversal of lncRNAs and associated mRNAs expression in active vs latent HIV infection |
Nair, Madhavan; Sagar, Vidya; Pilakka-Kanthikeel, Sudheesh |
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2016-10-19 |
COMM-USE |
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PMC5069461 |
27756902.0 |
10.1038/srep34862 |
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Trobaugh_2017, Haasnoot_2010, Herbert_2016, Atianand_2014 |
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Transcriptomic and proteomic analyses of rhabdomyosarcoma cells reveal differential cellular gene expression in response to enterovirus 71 infection |
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2005 |
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PMC |
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PMC7162300 |
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10.1111/j.1462-5822.2005.00644.x |
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Trobaugh_2017, Haasnoot_2010, Herbert_2016 |
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Perturbations in neuroinflammatory pathways are associated with paclitaxel-induced peripheral neuropathy in breast cancer survivors |
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2019 |
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PMC |
N |
PMC6788784 |
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10.1016/j.jneuroim.2019.577019 |
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Haasnoot_2010 |
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Chapter 61 The cat with a cloudy eye |
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Detection of SARS-CoV-2 Among Residents and Staff Members of an Independent and Assisted Living Community for Older Adults — Seattle, Washington, 2020 |
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2020 |
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COMM-USE |
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PMC7147909 |
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10.15585/mmwr.mm6914e2 |
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Long noncoding RNAs (lncRNAs) dynamics evidence immunomodulation during ISAV-Infected Atlantic salmon (Salmo salar) |
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COMM-USE |
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PMC4778034 |
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10.1038/srep22698 |
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SARS-CoV Regulates Immune Function-Related Gene Expression in Human Monocytic Cells |
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PMC |
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PMC3413073 |
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10.1089/vim.2011.0099 |
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MiR-10a-5p-Mediated Syndecan 1 Suppression Restricts Porcine Hemagglutinating Encephalomyelitis Virus Replication |
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2020 |
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COMM-USE |
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PMC7044266 |
32153518.0 |
10.3389/fmicb.2020.00105 |
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Trobaugh_2017, Herbert_2016, Haasnoot_2010 |
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A de novo transcriptome analysis shows that modulation of the JAK-STAT signaling pathway by salmonid alphavirus subtype 3 favors virus replication in macrophage/dendritic-like TO-cells |
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COMM-USE |
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PMC4878077 |
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10.1186/s12864-016-2739-6 |
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De-Novo Transcriptome Sequencing of a Normalized cDNA Pool from Influenza Infected Ferrets |
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COMM-USE |
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10.1371/journal.pone.0037104 |
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Proteomic analysis of primary duck hepatocytes infected with duck hepatitis B virus |
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COMM-USE |
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PMC2904733 |
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Trobaugh_2017 |
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18S rRNA is a reliable normalisation gene for real time PCR based on influenza virus infected cells |
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COMM-USE |
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PMC3499178 |
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10.1186/1743-422x-9-230 |
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Global profiling of megalocytivirus-induced proteins in tongue sole (Cynoglossus semilaevis) spleen identifies cellular processes essential to viral infection |
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2019-03-31 |
PMC |
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PMC7102559 |
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10.1016/j.dci.2018.11.006 |
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Trobaugh_2017, Herbert_2016 |
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Comparative in vitro transcriptomic analyses of COVID-19 candidate therapy hydroxychloroquine suggest limited immunomodulatory evidence of SARS-CoV-2 host response genes. |
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BioRxiv |
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Proteomics analysis of differentially expressed proteins in chicken trachea and kidney after infection with the highly virulent and attenuated coronavirus infectious bronchitis virus in vivo |
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2012 |
2012-03-31 |
COMM-USE |
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PMC3342233 |
22463732.0 |
10.1186/1477-5956-10-24 |
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Trobaugh_2017 |
Cao_Z_2011, Ding_2012 |
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Network perturbation analysis of gene transcriptional profiles reveals protein targets and mechanism of action of drugs and influenza A viral infection |
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10.1093/nar/gkx1314 |
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Trobaugh_2017, Haasnoot_2010, Atianand_2014, Chasman_2016 |
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PMC4619110 |
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PMC7092954 |
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PMC5322194 |
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PMC7088819 |
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10.1007/s11596-017-1781-1 |
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PMC4253007 |
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10.1186/s12865-014-0038-z |
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Haasnoot_2010, Trobaugh_2017, Herbert_2016, Camp_2012 |
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Long noncoding RNAs in innate immunity |
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10.1038/cmi.2015.68 |
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Atianand_2014, Trobaugh_2017 |
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Identifcation of differentially expressed long non-coding RNAs in CD4+ T cells response to latent tuberculosis infection |
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PMC7112653 |
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Trobaugh_2017, Haasnoot_2010, Atianand_2014, Wang_2007 |
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Ubiquitin–Proteasome System Is Required for Efficient Replication of Singapore Grouper Iridovirus |
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COMM-USE |
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Transcriptome Analysis of Feline Infectious Peritonitis Virus Infection |
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PMC7121011 |
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10.1007/978-1-4939-2438-7_20 |
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Comparative Analysis of Transcriptional Profiles of Adult Schistosoma japonicum from Different Laboratory Animals and the Natural Host, Water Buffalo |
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COMM-USE |
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PMC4540470 |
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10.1371/journal.pntd.0003993 |
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Analysis of protein expression changes of the Vero E6 cells infected with classic PEDV strain CV777 by using quantitative proteomic technique |
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PMC |
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PMC7113725 |
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10.1016/j.jviromet.2015.03.002 |
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Trobaugh_2017, Haasnoot_2010 |
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Characterization of plasma proteins in children of different Mycobacterium tuberculosis infection status using label-free quantitative proteomics |
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PMC5732728 |
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10.18632/oncotarget.21179 |
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Haasnoot_2010, Trobaugh_2017 |
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Comparative transcriptional analysis reveals distinct expression patterns of channel catfish genes after the first infection and re-infection with Aeromonas hydrophila |
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PMC |
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PMC7111657 |
24036330.0 |
10.1016/j.fsi.2013.08.027 |
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Thibivilliers_2009, Olsvik_2008, Chen_2009 |
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Host genes regulate transcription of sperm-introduced hepatitis B virus genes in embryo |
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2017-10-31 |
PMC |
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PMC7127588 |
28822827.0 |
10.1016/j.reprotox.2017.08.009 |
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Trobaugh_2017, Wang_2007, Brake_2008 |
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Network Clustering Revealed the Systemic Alterations of Mitochondrial Protein Expression |
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COMM-USE |
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PMC3127811 |
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10.1371/journal.pcbi.1002093 |
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Trobaugh_2017, Haasnoot_2010, Wang_2007 |
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Proteomics Analysis of the DF-1 Chicken Fibroblasts Infected with Avian Reovirus Strain S1133 |
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COMM-USE |
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PMC3965424 |
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10.1371/journal.pone.0092154 |
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Trobaugh_2017, Haasnoot_2010, Herbert_2016 |
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The regulation mechanism of lncRNAs and mRNAs in sea cucumbers under global climate changes: Defense against thermal and hypoxic stresses |
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PMC |
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PMC7144348 |
31905562.0 |
10.1016/j.scitotenv.2019.136045 |
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A Subcellular Quantitative Proteomic Analysis of Herpes Simplex Virus Type 1-Infected HEK 293T Cells |
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2019 |
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COMM-USE |
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PMC6930547 |
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10.3390/molecules24234215 |
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Analyses of the spleen proteome of chickens infected with Marek's disease virus |
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PMC |
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PMC7103390 |
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10.1016/j.virol.2009.05.020 |
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Trobaugh_2017, Haasnoot_2010 |
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Characterization and anti-inflammation role of swine IFITM3 gene |
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PMC5650283 |
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10.18632/oncotarget.20568 |
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Reference gene selection for normalization of PCR analysis in chicken embryo fibroblast infected with H5N1 AIV |
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PMC |
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PMC7090763 |
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10.1007/s12250-010-3114-4 |
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Long non-coding RNA expression profiles in different severity EV71-infected hand foot and mouth disease patients |
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PMC |
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PMC7092854 |
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10.1016/j.bbrc.2017.09.141 |
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Trobaugh_2017, Haasnoot_2010, Zhang_2013, Atianand_2014, Poltronieri_2015 |
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Proteomic analysis of the response of porcine adrenal gland to heat stress |
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PMC |
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PMC7111741 |
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10.1016/j.rvsc.2018.11.004 |
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Haasnoot_2010, Trobaugh_2017, Atianand_2014 |
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Integrative QTL analysis of gene expression and chromatin accessibility identifies multi-tissue patterns of genetic regulation |
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2020-01-21 |
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PMC7010298 |
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10.1371/journal.pgen.1008537 |
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Wang_2007, Trobaugh_2017, Atianand_2014, Haasnoot_2010 |
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Proteomic alteration of Marc-145 cells and PAMs after infection by porcine reproductive and respiratory syndrome virus |
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PMC |
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PMC7112595 |
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10.1016/j.vetimm.2011.11.005 |
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Generation of Phaseolus vulgaris ESTs and investigation of their regulation upon Uromyces appendiculatus infection |
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COMM-USE |
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PMC2684537 |
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10.1186/1471-2229-9-46 |
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Proteome analysis of porcine epidemic diarrhea virus (PEDV)‐infected Vero cells |
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2015 |
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PMC |
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PMC7167732 |
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10.1002/pmic.201400458 |
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Analysis of the spleen proteome of chickens infected with reticuloendotheliosis virus |
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COMM-USE |
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PMC5387025 |
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10.1007/s00705-016-3180-5 |
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Trobaugh_2017, Haasnoot_2010 |
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Comparative transcriptome analysis reveals the role of p53 signalling pathway during red‐spotted grouper nervous necrosis virus infection in Lateolabrax japonicus brain cells |
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PMC |
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PMC7166548 |
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MicroRNA Regulation of RNA Virus Replication and Pathogenesis |
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PMC5836316 |
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10.1016/j.molmed.2016.11.003 |
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Characterization of the Transcriptome and Gene Expression of Brain Tissue in Sevenband Grouper (Hyporthodus septemfasciatus) in Response to NNV Infection |
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PMC |
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PMC7094120 |
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10.1016/j.jtbi.2011.07.018 |
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Haasnoot_2010, Trobaugh_2017, Atianand_2014 |
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Detection of Nuclear Protein Profile Changes by Human Metapneumovirus M2-2 Protein Using Quantitative Differential Proteomics |
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COMM-USE |
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PMC5748611 |
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10.3390/vaccines5040045 |
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Trobaugh_2017, Haasnoot_2010 |
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Peripheral Blood Mononuclear Cell Gene Expression in Chronic Obstructive Pulmonary Disease |
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PMC |
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PMC3824029 |
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10.1165/rcmb.2012-0230oc |
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Cholesterol-25-hydroxylase Is a Chicken ISG That Restricts ALV-J Infection by Producing 25-hydroxycholesterol |
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PMC6631237 |
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Evidence for a crucial role of a host non-coding RNA in influenza A virus replication |
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PMC3929426 |
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10.4161/rna.27504 |
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Trobaugh_2017, Haasnoot_2010, Herbert_2016 |
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Transcriptomics analysis reveals candidate genes and pathways for susceptibility or resistance to Singapore grouper iridovirus in orange-spotted grouper (Epinephelus coioides) |
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PMC |
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10.1016/j.dci.2018.09.003 |
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Early transcriptional response in the jejunum of germ-free piglets after oral infection with virulent rotavirus |
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PMC |
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PMC2441536 |
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10.1007/s00705-008-0118-6 |
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Herbert_2016, Trobaugh_2017, Wang_2007, Haasnoot_2010 |
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Gene Expression Profile during Chondrogenesis in Human Bone Marrow derived Mesenchymal Stem Cells using a cDNA Microarray |
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NONCOMM |
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PMC3124712 |
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10.3346/jkms.2011.26.7.851 |
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Identification of Sumoylated Proteins in the Silkworm Bombyx mori |
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COMM-USE |
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PMC4284691 |
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10.3390/ijms151222011 |
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Alveolar macrophages in allergic asthma: An expression signature characterized by heat shock protein pathways |
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PMC |
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PMC7124256 |
19913588.0 |
10.1016/j.humimm.2009.11.005 |
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0.362670 |
Wang_2007, Haasnoot_2010, Trobaugh_2017 |
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Differentially profiling the low-expression transcriptomes of human hepatoma using a novel SSH/microarray approach |
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2006 |
2006-05-31 |
COMM-USE |
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PMC1522022 |
16737534.0 |
10.1186/1471-2164-7-131 |
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0.361008 |
Yu_H_2007, Wang_2007 |
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Impact of MicroRNA in Normal and Pathological Respiratory Epithelia |
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2011 |
2011-01-19 |
PMC |
N |
PMC7121186 |
21594785.0 |
10.1007/978-1-61779-117-8_12 |
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0.353135 |
Trobaugh_2017, Haasnoot_2010, Atianand_2014 |
Trypsteen_2016 |
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Fish Autophagy Protein 5 Exerts Negative Regulation on Antiviral Immune Response Against Iridovirus and Nodavirus |
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COMM-USE |
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PMC6433989 |
30941145.0 |
10.3389/fimmu.2019.00517 |
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0.352669 |
Trobaugh_2017 |
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miR-1306 Mediates the Feedback Regulation of the TGF-β/SMAD Signaling Pathway in Granulosa Cells |
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2019 |
2019-03-31 |
COMM-USE |
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PMC6523565 |
30935128.0 |
10.3390/cells8040298 |
16qix4ab |
0.351686 |
Bedadala_2007 |
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Effects of lactation and pregnancy on gene expression of endometrium of Holstein cows at day 17 of the estrous cycle or pregnancy |
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2012-10-31 |
None |
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PMC7094660 |
22884349.0 |
10.3168/jds.2011-5114 |
e3wx096u |
0.351050 |
Wang_2007, Yi_Z_2014, Liu_X_2015, Zhang_2016 |
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Transcriptome and Comparative Gene Expression Analysis of Sogatella furcifera (Horváth) in Response to Southern Rice Black-Streaked Dwarf Virus |
Xu, Yi; Zhou, Wenwu; Zhou, Yijun; Wu, Jianxiang; Zhou, Xueping |
2012 |
2012-04-27 |
COMM-USE |
N |
PMC3338671 |
22558400.0 |
10.1371/journal.pone.0036238 |
i05h8csb |
0.350361 |
Trobaugh_2017 |
Thibivilliers_2009 |
144 |
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iTRAQ-based Proteomic Analysis of Porcine Kidney Epithelial PK15 cells Infected with Pseudorabies virus |
Yang, Songbai; Pei, Yue; Zhao, Ayong |
2017 |
2017-04-04 |
COMM-USE |
N |
PMC5379687 |
28374783.0 |
10.1038/srep45922 |
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0.349405 |
Trobaugh_2017, Haasnoot_2010 |
Ding_2012 |
145 |
Chen_2018 |
Genome-wide identification and characterization of long non-coding RNAs involved in the early somatic embryogenesis in Dimocarpus longan Lour |
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2018 |
2018-11-06 |
COMM-USE |
N |
PMC6219066 |
30400813.0 |
10.1186/s12864-018-5158-z |
93ldjyi5 |
0.346480 |
Wang_2007, Zhang_2013, Atianand_2014, Haasnoot_2010, Trobaugh_2017 |
Liui_2020, Trypsteen_2016, Liu_W_2018 |
146 |
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Characterization of a protein tyrosine phosphatase as a host factor promoting baculovirus replication in silkworm, Bombyx mori |
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2016 |
2016-04-30 |
PMC |
N |
PMC7124732 |
26684065.0 |
10.1016/j.dci.2015.12.002 |
5xftvm8x |
0.340825 |
Trobaugh_2017 |
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147 |
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Immune function of an angiotensin-converting enzyme against Rice stripe virus infection in a vector insect |
Wang, Xue; Wang, Wei; Zhang, Wenzhong; Li, Jing; Cui, Feng; Qiao, Luqin |
2019 |
2019-07-31 |
PMC |
N |
PMC7127076 |
31247402.0 |
10.1016/j.virol.2019.05.007 |
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0.340825 |
Trobaugh_2017, Herbert_2016, Haasnoot_2010 |
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Jeswin_2016 |
Proteomic analysis by iTRAQ in red claw crayfish, Cherax quadricarinatus, hematopoietic tissue cells post white spot syndrome virus infection |
Jeswin, Joseph; Xie, Xiao-lu; Ji, Qiao-lin; Wang, Ke-jian; Liu, Hai-peng |
2016 |
2016-03-31 |
PMC |
N |
PMC7111676 |
26845698.0 |
10.1016/j.fsi.2016.01.035 |
upsn0zb4 |
0.338857 |
Trobaugh_2017 |
Yang_2017 |
149 |
Kutuzova_2004 |
Gene expression profiles in rat intestine identify pathways for 1,25-dihydroxyvitamin D3 stimulated calcium absorption and clarify its immunomodulatory properties |
Kutuzova, Galina D.; DeLuca, Hector F. |
2004 |
2004-12-15 |
PMC |
N |
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15542054.0 |
10.1016/j.abb.2004.09.004 |
qr8bzp4r |
0.338626 |
Trobaugh_2017 |
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150 |
Espindola_2018 |
Inferring the presence of aflatoxin-producing Aspergillus flavus strains using RNA sequencing and electronic probes as a transcriptomic screening tool |
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2018 |
2018-07-09 |
BioRxiv |
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10.1101/365254 |
hdwn2fkj |
0.337745 |
Yu_H_2007 |
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Zirger_2012 |
Immune-mediated Loss of Transgene Expression From Virally Transduced Brain Cells Is Irreversible, Mediated by IFNγ, Perforin, and TNFα, and due to the Elimination of Transduced Cells |
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2012 |
2012-04-01 |
PMC |
N |
PMC3321600 |
22233583.0 |
10.1038/mt.2011.243 |
ahx74893 |
0.337049 |
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Aurisicchio_2002 |
152 |
Cho_Y_2008 |
Differential modulations of two glyceraldehyde 3-phosphate dehydrogenase mRNAs in response to bacterial and viral challenges in a marine teleost Oplegnathus fasciatus (Perciformes) |
Cho, Young Sun; Lee, Sang Yoon; Kim, Ki Hong; Nam, Yoon Kwon |
2008 |
2008-11-30 |
PMC |
N |
PMC7129407 |
18692141.0 |
10.1016/j.fsi.2008.07.007 |
h9c6z4an |
0.336275 |
Wang_2007, Herbert_2016, Haasnoot_2010, Trobaugh_2017 |
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153 |
Silveyra_2014 |
Knockdown of Drosha in human alveolar type II cells alters expression of SP-A in culture: a pilot study |
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2014 |
2014-07-24 |
PMC |
N |
PMC4197128 |
25058539.0 |
10.3109/01902148.2014.929757 |
22h4242g |
0.333889 |
Trobaugh_2017, Haasnoot_2010, Wang_2007, Herbert_2016 |
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154 |
Watson_2007 |
Determination of suitable housekeeping genes for normalisation of quantitative real time PCR analysis of cells infected with human immunodeficiency virus and herpes viruses |
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2007 |
2007-12-03 |
COMM-USE |
N |
PMC2216015 |
18053162.0 |
10.1186/1743-422x-4-130 |
qf2zwbjg |
0.330411 |
Trobaugh_2017 |
Kuchipudi_2012 |
155 |
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Global Expression Profiling in Epileptogenesis: Does It Add to the Confusion? |
Wang, Yi Yuen; Smith, Paul; Murphy, Michael; Cook, Mark |
2010 |
2010-01-23 |
COMM-USE |
N |
PMC2805866 |
19243383.0 |
10.1111/j.1750-3639.2008.00254.x |
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0.330056 |
Haasnoot_2010 |
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Ding_2015 |
Characterization of two novel ADP ribosylation factors from giant freshwater prawn Macrobrachium rosenbergii and their responses to WSSV challenge |
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2015 |
2015-01-31 |
None |
N |
PMC7124501 |
25451300.0 |
10.1016/j.dci.2014.10.006 |
o1dj3b3z |
0.327191 |
Trobaugh_2017, Haasnoot_2010, Wang_2007 |
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Kim_T_2013 |
Escherichia coli YmdB regulates biofilm formation independently of its role as an RNase III modulator |
Kim, Taeyeon; Lee, Juyeon; Kim, Kwang-sun |
2013 |
2013-11-24 |
COMM-USE |
N |
PMC4222554 |
24267348.0 |
10.1186/1471-2180-13-266 |
zz3taimh |
0.326794 |
Haasnoot_2010, Trobaugh_2017 |
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Radonić_2005 |
Reference gene selection for quantitative real-time PCR analysis in virus infected cells: SARS corona virus, Yellow fever virus, Human Herpesvirus-6, Camelpox virus and Cytomegalovirus infections |
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2005 |
2005-02-10 |
COMM-USE |
N |
PMC549079 |
15705200.0 |
10.1186/1743-422x-2-7 |
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0.325954 |
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Differential expression analysis of the broiler tracheal proteins responsible for the immune response and muscle contraction induced by high concentration of ammonia using iTRAQ-coupled 2D LC-MS/MS |
Xiong, Yan; Tang, Xiangfang; Meng, Qingshi; Zhang, Hongfu |
2016 |
2016-10-17 |
COMM-USE |
N |
PMC7089013 |
27761697.0 |
10.1007/s11427-016-0202-8 |
6sivggy0 |
0.325618 |
Haasnoot_2010, Wang_2007, Trobaugh_2017 |
Cao_Z_2011, Yang_2017, Chen_2009 |
160 |
Sun_J_2013 |
Cellular microRNA miR-181b Inhibits Replication of Mink Enteritis Virus by Repression of Non-Structural Protein 1 Translation |
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2013 |
2013-12-11 |
COMM-USE |
N |
PMC3859502 |
24349084.0 |
10.1371/journal.pone.0081515 |
36f6amze |
0.323007 |
Trobaugh_2017, Haasnoot_2010, Herbert_2016 |
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Hu_F_2019 |
Expression and role of HEPIS in breast cancer |
Hu, Fen; Zhang, Yunfeng; Li, Mi; Bai, Yun; Zhang, Xiujun |
2019 |
2019-10-17 |
NONCOMM |
N |
PMC6865829 |
31788121.0 |
10.3892/ol.2019.10993 |
ekjk9ycx |
0.321215 |
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Hu_F_2017 |
162 |
Shobahah_2017 |
Quantitative phosphoproteome on the silkworm (Bombyx mori) cells infected with baculovirus |
Shobahah, Jauharotus; Xue, Shengjie; Hu, Dongbing; Zhao, Cui; Wei, Ming; Quan, Yanping; Yu, Wei |
2017 |
2017-06-19 |
COMM-USE |
N |
PMC5477107 |
28629377.0 |
10.1186/s12985-017-0783-8 |
o0fp7v0y |
0.320171 |
Trobaugh_2017 |
Tang_2014 |
163 |
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Involvement of caveolin-1 in the Jak–Stat signaling pathway and infectious spleen and kidney necrosis virus infection in mandarin fish (Siniperca chuatsi) |
Guo, Chang-Jun; Yang, Xiao-Bo; Wu, Yan-Yan; Yang, Li-Shi; Mi, Shu; Liu, Zhao-Yu; Jia, Kun-Tong; Huang, Yu-Xin; Weng, Shao-Ping; Yu, Xiao-Qiang; He, Jian-Guo |
2011 |
2011-04-30 |
PMC |
N |
PMC7112660 |
21296425.0 |
10.1016/j.molimm.2011.01.001 |
ihn3kay1 |
0.318275 |
Trobaugh_2017 |
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Almansa_2012 |
Critical COPD respiratory illness is linked to increased transcriptomic activity of neutrophil proteases genes |
Almansa, Raquel; Socias, Lorenzo; Sanchez-Garcia, Monica; Martín-Loeches, Ignacio; del Olmo, Milagros; Andaluz-Ojeda, David; Bobillo, Felipe; Rico, Lucia; Herrero, Agueda; Roig, Vicente; San-Jose, C Alicia; Rosich, Sara; Barbado, Julia; Disdier, Carlos; de Lejarazu, Raúl Ortiz; Gallegos, Maria C; Fernandez, Victoria; Bermejo-Martin, Jesus F |
2012 |
2012-08-02 |
COMM-USE |
N |
PMC3475085 |
22852767.0 |
10.1186/1756-0500-5-401 |
bw2zz5he |
0.318042 |
Yu_H_2007 |
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Fei_T_2009 |
Genome-wide mapping of SMAD target genes reveals the role of BMP signaling in embryonic stem cell fate determination |
Fei, Teng; Xia, Kai; Li, Zhongwei; Zhou, Bing; Zhu, Shanshan; Chen, Hua; Zhang, Jianping; Chen, Zhang; Xiao, Huasheng; Han, Jing-Dong J.; Chen, Ye-Guang |
2009 |
2009-11-19 |
None |
N |
PMC2798829 |
19926752.0 |
10.1101/gr.092114.109 |
t014t7do |
0.317161 |
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166 |
Haasnoot_2010 |
RNAi and Cellular miRNAs in Infections by Mammalian Viruses |
Haasnoot, Joost; Berkhout, Ben |
2010 |
2010-11-19 |
PMC |
N |
PMC7120436 |
21431677.0 |
10.1007/978-1-61779-037-9_2 |
tg1310br |
0.312367 |
Trobaugh_2017, Herbert_2016 |
Trobaugh_2017, Carnero_2011 |
167 |
Zheng_2018 |
MicroRNA-221-5p Inhibits Porcine Epidemic Diarrhea Virus Replication by Targeting Genomic Viral RNA and Activating the NF-κB Pathway |
Zheng, Hongqing; Xu, Lei; Liu, Yuzhong; Li, Cheng; Zhang, Liang; Wang, Tao; Zhao, Di; Xu, Xingang; Zhang, Yanming |
2018 |
2018-10-29 |
COMM-USE |
N |
PMC6274926 |
30380612.0 |
10.3390/ijms19113381 |
4bkemil0 |
0.312056 |
Trobaugh_2017, Haasnoot_2010, Herbert_2016 |
Hu_S_2020 |
168 |
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Tick-borne encephalitis virus inhibits rRNA synthesis and host protein production in human cells of neural origin |
Selinger, Martin; Tykalová, Hana; Štěrba, Ján; Věchtová, Pavlína; Vavrušková, Zuzana; Lieskovská, Jaroslava; Kohl, Alain; Schnettler, Esther; Grubhoffer, Libor |
2019 |
2019-09-27 |
COMM-USE |
N |
PMC6785130 |
31560682.0 |
10.1371/journal.pntd.0007745 |
bglrptqj |
0.311783 |
Trobaugh_2017 |
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A Tale of Two RNAs during Viral Infection: How Viruses Antagonize mRNAs and Small Non-Coding RNAs in The Host Cell |
Herbert, Kristina M.; Nag, Anita |
2016 |
2016-06-02 |
COMM-USE |
N |
PMC4926174 |
27271653.0 |
10.3390/v8060154 |
btwn1jy0 |
0.310515 |
Trobaugh_2017 |
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170 |
Muhammad_2019 |
Molecular Characterization of Two Mitogen-Activated Protein Kinases: p38 MAP Kinase and Ribosomal S6 Kinase From Bombyx mori (Lepidoptera: Bombycidae), and Insight Into Their Roles in Response to BmNPV Infection |
Muhammad, Azharuddin; Toufeeq, Shahzad; Yu, Hai-Zhong; Wang, Jie; Zhang, Shang-Zhi; Li, Bing; Li, Zhen; Yang, Li-Ang; Hu, Pei; Ma, Yan; Xu, Jia-Ping |
2019 |
2019-02-02 |
NONCOMM |
N |
PMC6359879 |
30715437.0 |
10.1093/jisesa/iey134 |
2s3x6sj8 |
0.304968 |
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171 |
Zhao_2019 |
Dynamic profiles, biodistribution and integration evaluation after intramuscular/intravenous delivery of a novel therapeutic DNA vaccine encoding chicken type II collagen for rheumatoid arthritis in vaccinated normal rodent |
Zhao, Xiao; Long, Juan; Liang, Fei; Liu, Nan; Sun, Yuying; Xi, Yongzhi |
2019 |
2019-09-06 |
COMM-USE |
N |
PMC6729025 |
31492169.0 |
10.1186/s12951-019-0528-5 |
vt930bns |
0.304013 |
Brake_2008, Wang_2007, Chang_2011 |
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Kneller_2007 |
Using LongSAGE to Detect Biomarkers of Cervical Cancer Potentially Amenable to Optical Contrast Agent Labelling |
Kneller, Julie M.; Ehlen, Thomas; Matisic, Jasenka P.; Miller, Dianne; Van Niekerk, Dirk; Lam, Wan L.; Marra, Marco; Richards-Kortum, Rebecca; Follen, Michelle; MacAulay, Calum; Jones, Steven J. M. |
2007 |
2007-12-11 |
COMM-USE |
N |
PMC2717845 |
19662225.0 |
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377a16tn |
0.303748 |
Yu_H_2007, Trobaugh_2017, Haasnoot_2010 |
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