Topic 05 -- Abstracts with Biological Entities (English) - 75 Topics / Sub-Topic Model 35 - 15 Topics

cite ad title authors publish year publish time dataset abstract mentions covid pmcid pubmed id doi cord uid topic weight Similarity scispacy Similarity specter
1 Wang_2009 Construction of plasmids expressing Sars-CoV encoding proteins and their effects on transcription of hfgl2 prothrombinase Wang, Hongwu; Han, Meifang; Yao, Huaning; Wang, Zhanhui; Xi, Dong; Yan, Weiming; Hou, Jinlin; Luo, Xiaoping; Ning, Qin 2009 2009-06-10 PMC N PMC7089052 19513614.0 10.1007/s11596-009-0311-1 1zoizzdp 0.932058 Meng_2006
2 Feng_2016 Endogenous Retrovirus ev21 Dose Not Recombine with ALV-J and Induces the Expression of ISGs in the Host Feng, Min; Tan, Yan; Dai, Manman; Li, Yuanfang; Xie, Tingting; Li, Hongmei; Shi, Meiqing; Zhang, Xiquan 2016 2016-10-25 COMM-USE N PMC5078265 27826543.0 10.3389/fcimb.2016.00140 bqv0nbo7 0.854214
3 Liu_B_2012 Construction of fat1 Gene Expression Vector and Its Catalysis Efficiency in Bovine Fetal Fibroblast Cells Liu, Boyang; Yang, Runjun; Li, Junya; Zhang, Lupei; Liu, Jing; Lu, Chunyan; Lian, Chuanjiang; Li, Zezhong; Zhang, Yonghong; Zhang, Liying; Zhao, Zhihui 2012 2012-05-01 NONCOMM N PMC4093122 25049605.0 10.5713/ajas.2011.11495 ly8fr7lc 0.808335 Brake_2008, Trobaugh_2017, Wang_2007
4 Lorenzo-Díaz_2014 Bringing them together: Plasmid pMV158 rolling circle replication and conjugation under an evolutionary perspective Lorenzo-Díaz, Fabián; Fernández-López, Cris; Garcillán-Barcia, M. Pilar; Espinosa, Manuel 2014 2014-07-31 None N PMC7103276 24942190.0 10.1016/j.plasmid.2014.05.004 hnodrgnp 0.737205
5 Qin_Z_2004 Silencing of SARS-CoV spike gene by small interfering RNA in HEK 293T cells Qin, Zhao-ling; Zhao, Ping; Zhang, Xiao-lian; Yu, Jian-guo; Cao, Ming-mei; Zhao, Lan-juan; Luan, Jie; Qi, Zhong-tian 2004 2004-11-26 PMC N PMC7092946 15504339.0 10.1016/j.bbrc.2004.09.180 es9zk553 0.708328 Brake_2008, Wang_2009, Li_T_2005, Sakamoto_2007, Meng_2006 Wang_2009, Haddad_2011, Zhao_2005, Li_T_2005
6 Li_T_2005 siRNA targeting the Leader sequence of SARS-CoV inhibits virus replication Li, T; Zhang, Y; Fu, L; Yu, C; Li, X; Li, Y; Zhang, X; Rong, Z; Wang, Y; Ning, H; Liang, R; Chen, W; Babiuk, L A; Chang, Z 2005 2005-03-17 PMC N PMC7091583 15772689.0 10.1038/sj.gt.3302479 n4r40yit 0.687505 Brake_2008, Trobaugh_2017 Wang_2009, Haddad_2011
7 Zhao_2005 Small interfering RNA inhibits SARS-CoV nucleocapsid gene expression in cultured cells and mouse muscles Zhao, Ping; Qin, Zhao-Ling; Ke, Jin-Shan; Lu, Yang; Liu, Min; Pan, Wei; Zhao, Lan-Juan; Cao, Jie; Qi, Zhong-Tian 2005 2005-04-25 PMC N PMC7094369 15848179.0 10.1016/j.febslet.2005.02.080 9966p02q 0.653094 Brake_2008, Sakamoto_2007, Li_T_2005 Wang_2009
8 Qin_Z_2007 siRNAs targeting terminal sequences of the SARS-associated coronavirus membrane gene inhibit M protein expression through degradation of M mRNA Qin, Zhao-ling; Zhao, Ping; Cao, Ming-mei; Qi, Zhong-tian 2007 2007-11-30 PMC N PMC7112935 17590445.0 10.1016/j.jviromet.2007.05.017 shrd1s7r 0.644660 Brake_2008 Wang_2009, Haddad_2011
9 Zhang_2020 Quantitative label-free proteomic analysis reveals differentially expressed proteins in the digestive juice of resistant versus susceptible silkworm strains and their predicted impacts on BmNPV infection Zhang, Shang-zhi; Wang, Jie; Zhu, Lin-bao; Toufeeq, Shahzad; Xu, Xin; You, Ling-ling; Li, Bing; Hu, Pei; Xu, Jia-ping 2020 2020-01-06 PMC N PMC7102787 31610263.0 10.1016/j.jprot.2019.103527 0isssmbl 0.587580 Trobaugh_2017, Haasnoot_2010, Herbert_2016 Yang_2017, Wang_2016
10 Dai_M_2016 Exogenous avian leukosis virus-induced activation of the ERK/AP1 pathway is required for virus replication and correlates with virus-induced tumorigenesis Dai, Manman; Feng, Min; Ye, Yu; Wu, Xiaochan; Liu, Di; Liao, Ming; Cao, Weisheng 2016 2016-01-12 COMM-USE N PMC4709637 26754177.0 10.1038/srep19226 63lnx2aj 0.576707
11 Cao_Y_2011 Identification and Characterization of Three Novel Small Interference RNAs That Effectively Down-Regulate the Isolated Nucleocapsid Gene Expression of SARS Coronavirus Cao, Ying-Li; Wang, Ying; Guo, Rong; Yang, Fan; Zhang, Yun; Wang, Shu-Hui; Liu, Li 2011 2011-02-11 COMM-USE N PMC6259856 21317844.0 10.3390/molecules16021544 q18b88lm 0.551549 Trobaugh_2017, Haasnoot_2010, Herbert_2016, Brake_2008, Wang_2007 Wang_2009, Wang_2010
12 Wang_2017 Role of transcription regulatory sequence in regulation of gene expression and replication of porcine reproductive and respiratory syndrome virus Wang, Chengbao; Meng, Han; Gao, Yujin; Gao, Hui; Guo, Kangkang; Almazan, Fernando; Sola, Isabel; Enjuanes, Luis; Zhang, Yanming; Abrahamyan, Levon 2017 2017-08-10 COMM-USE N PMC5553793 28797297.0 10.1186/s13567-017-0445-2 nxklhpor 0.540933
13 Xie_T_2019 Cholesterol-25-hydroxylase Is a Chicken ISG That Restricts ALV-J Infection by Producing 25-hydroxycholesterol Xie, Tingting; Feng, Min; Dai, Manman; Mo, Guodong; Ruan, Zhuohao; Wang, Guiyan; Shi, Meiqing; Zhang, Xiquan 2019 2019-05-30 COMM-USE N PMC6631237 31151272.0 10.3390/v11060498 9rx2vmjh 0.537494 Barber_2013
14 Muhammad_2019 Molecular Characterization of Two Mitogen-Activated Protein Kinases: p38 MAP Kinase and Ribosomal S6 Kinase From Bombyx mori (Lepidoptera: Bombycidae), and Insight Into Their Roles in Response to BmNPV Infection Muhammad, Azharuddin; Toufeeq, Shahzad; Yu, Hai-Zhong; Wang, Jie; Zhang, Shang-Zhi; Li, Bing; Li, Zhen; Yang, Li-Ang; Hu, Pei; Ma, Yan; Xu, Jia-Ping 2019 2019-02-02 NONCOMM N PMC6359879 30715437.0 10.1093/jisesa/iey134 2s3x6sj8 0.508046
15 Wang_2010 Small Interfering RNA Effectively Inhibits the Expression of SARS Coronavirus Membrane Gene at Two Novel Targeting Sites Wang, Ying; Cao, Ying-Li; Yang, Fan; Zhang, Yun; Wang, Shu-Hui; Liu, Li 2010 2010-10-18 COMM-USE N PMC6259191 20956884.0 10.3390/molecules15107197 vtkkczef 0.503451 Trobaugh_2017, Brake_2008, Wang_2007 Wang_2009, Haddad_2011
16 Meng_2006 Identification of effective siRNA blocking the expression of SARS viral envelope E and RDRP genes Meng, Bo; Lui, Yue-woon; Meng, Shi; Cao, Changxiu; Hu, Yinghe 2006 2006-01-01 PMC N PMC7090727 16757801.0 10.1385/mb:33:2:141 e49c42ix 0.503234 Haddad_2011, Wang_2009, Sui_H_2009
17 Wang_2016 Characterization of a protein tyrosine phosphatase as a host factor promoting baculovirus replication in silkworm, Bombyx mori Wang, Fei; Xue, Renju; Li, Xianyang; Hu, Cuimei; Xia, Qingyou 2016 2016-04-30 PMC N PMC7124732 26684065.0 10.1016/j.dci.2015.12.002 5xftvm8x 0.485302 Trobaugh_2017
18 Yue_H_2008 Short hairpin RNA targeting NP mRNA inhibiting Newcastle disease virus production and other viral structural mRNA transcription Yue, Hua; Deng, Shu; Yang, Fa-long; Li, Ding-fei; Fu, An-jing; Yang, Fan; Tang, Cheng 2008 2008-12-10 PMC N PMC7089332 19082701.0 10.1007/s11262-008-0309-y mbe6jd42 0.453792 Trobaugh_2017
19 Tang_2014 Identification of Sumoylated Proteins in the Silkworm Bombyx mori Tang, Xudong; Fu, Xuliang; Hao, Bifang; Zhu, Feng; Xiao, Shengyan; Xu, Li; Shen, Zhongyuan 2014 2014-12-01 COMM-USE N PMC4284691 25470021.0 10.3390/ijms151222011 ygljuzvq 0.449786
20 Lv_K_2009 Transient inhibition of foot-and-mouth disease virus replication by siRNAs silencing VP1 protein coding region Lv, Ke; Guo, Yingjun; Zhang, Yiliang; Wang, Kaiyu; Li, Ka; Zhu, Yan; Sun, Shuhan 2009 2009-06-30 PMC N PMC7127796 19062053.0 10.1016/j.rvsc.2008.10.011 2gpsu1y4 0.429774 Haddad_2011
21 Haddad_2011 Silencing of HTLV-1 gag and env genes by small interfering RNAs in HEK 293 cells Haddad, Rodrigo; Kashima, Simone; Rodrigues, Evandra Strazza; Azevedo, Rochele; Palma, Patrícia Vianna Bonini; de Magalhães, Danielle Aparecida Rosa; Zago, Marco Antonio; Covas, Dimas Tadeu 2011 2011-04-30 PMC N PMC7112899 21277903.0 10.1016/j.jviromet.2011.01.012 3mi2aop5 0.415429 Trobaugh_2017, Brake_2008 Wang_2009
22 Shobahah_2017 Quantitative phosphoproteome on the silkworm (Bombyx mori) cells infected with baculovirus Shobahah, Jauharotus; Xue, Shengjie; Hu, Dongbing; Zhao, Cui; Wei, Ming; Quan, Yanping; Yu, Wei 2017 2017-06-19 COMM-USE N PMC5477107 28629377.0 10.1186/s12985-017-0783-8 o0fp7v0y 0.413936 Trobaugh_2017 Tang_2014
23 Zhao_2012 RNA interference targeting virion core protein ORF095 inhibits Goatpox virus replication in Vero cells Zhao, Zhixun; Wu, Guohua; Zhu, Xueliang; Yan, Xinmin; Dou, Yongxi; Li, Jian; Zhu, Haixia; Zhang, Qiang; Cai, Xuepeng 2012 2012-02-17 COMM-USE N PMC3298800 22340205.0 10.1186/1743-422x-9-48 bxijla09 0.377988 Brake_2008, Sakamoto_2007 Haddad_2011, Lv_K_2009
24 Selinger_2019 Tick-borne encephalitis virus inhibits rRNA synthesis and host protein production in human cells of neural origin Selinger, Martin; Tykalová, Hana; Štěrba, Ján; Věchtová, Pavlína; Vavrušková, Zuzana; Lieskovská, Jaroslava; Kohl, Alain; Schnettler, Esther; Grubhoffer, Libor 2019 2019-09-27 COMM-USE N PMC6785130 31560682.0 10.1371/journal.pntd.0007745 bglrptqj 0.375226 Trobaugh_2017
25 Wang_2016 Comparative Transcriptome Analysis of Bombyx mori (Lepidoptera) Larval Midgut Response to BmNPV in Susceptible and Near-Isogenic Resistant Strains Wang, Xue-Yang; Yu, Hai-Zhong; Geng, Lei; Xu, Jia-Ping; Yu, Dong; Zhang, Shang-Zhi; Ma, Yan; Fei, Dong-Qiong 2016 2016-05-11 COMM-USE N PMC4864234 27168061.0 10.1371/journal.pone.0155341 z1b7pj3s 0.369949 Trobaugh_2017, Haasnoot_2010, Herbert_2016 Thibivilliers_2009
26 Hu_W_2012 SARS-CoV Regulates Immune Function-Related Gene Expression in Human Monocytic Cells Hu, Wanchung; Yen, Yu-Ting; Singh, Sher; Kao, Chuan-Liang; Wu-Hsieh, Betty A. 2012 2012-08-01 PMC N PMC3413073 22876772.0 10.1089/vim.2011.0099 k72ims2f 0.363882 Trobaugh_2017
27 Gu_Q_2006 Expression of Helicobacter pylori urease subunit B gene in transgenic rice Gu, Qing; Han, Ning; Liu, Jianyi; Zhu, Muyuan 2006 2006-08-16 PMC N PMC7088001 16912927.0 10.1007/s10529-006-9141-4 59sibx6a 0.359827 Rukavtsova_2007
28 Zhang_2004 Silencing SARS-CoV Spike protein expression in cultured cells by RNA interference Zhang, Yuanjiang; Li, Tieshi; Fu, Ling; Yu, Changming; Li, Yinghua; Xu, Xialian; Wang, Yinyin; Ning, Hongxiu; Zhang, Shuping; Chen, Wei; Babiuk, Lorne A; Chang, Zhijie 2004 2004-02-27 PMC Y PMC7127813 14988013.0 10.1016/s0014-5793(04)00087-0 3me20gsi 0.324800 Trobaugh_2017 Wang_2009
29 SHI_Y_2005 Inhibition of genes expression of SARS coronavirus by synthetic small interfering RNAs SHI, Yi; YANG, De Hua; XIONG, Jie; JIA, Jie; HUANG, Bing; JIN, You Xin 2005 2005-03-23 PMC N PMC7091820 15780182.0 10.1038/sj.cr.7290286 bgo8istm 0.323287 Brake_2008, Lieberman_2003, Trobaugh_2017 Haddad_2011, Sui_H_2009