Topic 04 -- Abstracts with Biological Entities (English) - 75 Topics / Sub-Topic Model 35 - 15 Topics

cite ad title authors publish year publish time dataset abstract mentions covid pmcid pubmed id doi cord uid topic weight Similarity scispacy Similarity specter
1 Berrospi_2019 A comprehensive annotation and differential expression analysis of short and long non-coding RNAs in 16 bat genomes Nelly Mostajo Berrospi; Marie Lataretu; Sebastian Krautwurst; Florian Mock; Daniel Desirò; Kevin Lamkiewicz; Maximilian Collatz; Andreas Schoen; Friedemann Weber; Manja Marz; Martin Hölzer 2019 2019-08-19 BioRxiv N 10.1101/738526 ihqvcxv6 0.986239 Wang_2017, Mostajo_2019, Wang_2007 Mostajo_2019, Xu_X_2018, Xu_X_2019, Trypsteen_2016
2 Mostajo_2019 A comprehensive annotation and differential expression analysis of short and long non-coding RNAs in 16 bat genomes Mostajo, Nelly F; Lataretu, Marie; Krautwurst, Sebastian; Mock, Florian; Desirò, Daniel; Lamkiewicz, Kevin; Collatz, Maximilian; Schoen, Andreas; Weber, Friedemann; Marz, Manja; Hölzer, Martin 2019 2019-09-30 COMM-USE N PMC7108008 10.1093/nargab/lqz006 ph576eji 0.977587 Wang_2017, Trobaugh_2017, Wang_2007 Berrospi_2019, Trypsteen_2016, Xu_X_2018, Xu_X_2019
3 Atianand_2014 Long non-coding RNAs and control of gene expression in the immune system Atianand, Maninjay K.; Fitzgerald, Katherine A. 2014 2014-11-30 None N PMC4252818 25262537.0 10.1016/j.molmed.2014.09.002 jcfe36u6 0.887820 Trobaugh_2017, Haasnoot_2010, Herbert_2016 Trypsteen_2016, Zhang_2015
4 Wang_2017 Current Research on Non-Coding Ribonucleic Acid (RNA) Wang, Jing; Samuels, David C.; Zhao, Shilin; Xiang, Yu; Zhao, Ying-Yong; Guo, Yan 2017 2017-12-05 COMM-USE N PMC5748684 29206165.0 10.3390/genes8120366 mzwkz0xx 0.870921
5 Yang_2017 Small non-coding RNAs-based bone regulation and targeting therapeutic strategies Yang, Ying; Fang, Sijie 2017 2017-11-15 PMC N PMC7116989 27888003.0 10.1016/j.mce.2016.11.018 9mwr6a4x 0.863389 Trobaugh_2017, Haasnoot_2010, Atianand_2014, Poltronieri_2015, Herbert_2016 Fujita_2013
6 Chen_2019 Online Databases and Non-coding RNAs in Cardiovascular Diseases Chen, Rui; Shi, Chao; Yao, Jianhua; Chen, Wei 2019 2019-12-26 PMC N PMC7153034 10.1007/978-981-15-1671-9_3 wq8zmyhv 0.842485 Haasnoot_2010, Trobaugh_2017, Atianand_2014, Wang_2017, Poltronieri_2015 Yang_2017
7 Huang_2012 Regulatory long non-coding RNA and its functions Huang, Yong; Liu, Ning; Wang, Jian Ping; Wang, Yu Qin; Yu, Xue Li; Wang, Zhan Bin; Cheng, Xiang Chao; Zou, Quan 2012 2012-04-26 PMC N PMC7098196 22535282.0 10.1007/s13105-012-0166-y ezax8c1u 0.814084 Atianand_2014, Haasnoot_2010, Trobaugh_2017, Gullerova_2015 Zhang_2015, Trypsteen_2016, Atianand_2014
8 Satyavathi_2017 Long Non-Coding RNAs Regulating Immunity in Insects Satyavathi, Valluri; Ghosh, Rupam; Subramanian, Srividya 2017 2017-03-16 COMM-USE N PMC5832008 29657286.0 10.3390/ncrna3010014 wb5m8460 0.773242 Trobaugh_2017, Haasnoot_2010, Atianand_2014, Herbert_2016 Zhang_2015, Trypsteen_2016
9 Gullerova_2015 Long Non-coding RNA Gullerova, Monika 2015 2015-06-24 PMC N PMC7121004 10.1007/978-1-4939-3070-8_4 5yjakk5e 0.755005 Atianand_2014, Trobaugh_2017, Haasnoot_2010, Zhang_2013 Huang_2012, Atianand_2014, Trypsteen_2016, Satyavathi_2017
10 Xu_X_2018 Using pan RNA-seq analysis to reveal the ubiquitous existence of 5’ end and 3’ end small RNAs Xiaofeng Xu; Haishuo Ji; Zhi Cheng; Xiufeng Jin; Xue Yao; Yanqiang Liu; Qiang Zhao; Tao Zhang; Jishou Ruan; Wenjun Bu; Ze Chen; Shan Gao 2018 2018-10-15 BioRxiv N 10.1101/444117 zm3k337a 0.735654 Wang_2017, Trobaugh_2017, Wang_2007 Xu_X_2019
11 Xu_X_2019 Using Pan RNA-Seq Analysis to Reveal the Ubiquitous Existence of 5′ and 3′ End Small RNAs Xu, Xiaofeng; Ji, Haishuo; Jin, Xiufeng; Cheng, Zhi; Yao, Xue; Liu, Yanqiang; Zhao, Qiang; Zhang, Tao; Ruan, Jishou; Bu, Wenjun; Chen, Ze; Gao, Shan 2019 2019-02-14 COMM-USE N PMC6382676 30838030.0 10.3389/fgene.2019.00105 drxwihh2 0.722484 Wang_2017, Wang_2007, Trobaugh_2017 Xu_X_2018
12 Cui_L_2018 Diagnosis and Assessment of Microbial Infections with Host and Microbial MicroRNA Profiles Cui, Lunbiao; Markou, Athina; Stratton, Charles W.; Lianidou, Evi 2018 2018-11-10 PMC N PMC7119978 10.1007/978-3-319-95111-9_23 hnky9u87 0.700785 Trobaugh_2017, Haasnoot_2010, Herbert_2016
13 Stepanov_2015 Regulatory Role of Small Nucleolar RNAs in Human Diseases Stepanov, Grigory A.; Filippova, Julia A.; Komissarov, Andrey B.; Kuligina, Elena V.; Richter, Vladimir A.; Semenov, Dmitry V. 2015 2015-04-28 COMM-USE N PMC4427830 26060813.0 10.1155/2015/206849 0ws5q37g 0.699348 Trobaugh_2017, Atianand_2014
14 Gu_K_2018 Regulating gene expression in animals through RNA endonucleolytic cleavage Gu, Karen; Mok, Lawrence; Chong, Mark M.W. 2018 2018-11-02 None N PMC6223193 30426105.0 10.1016/j.heliyon.2018.e00908 o1scvi64 0.698615 Trobaugh_2017, Herbert_2016 Leung_2005
15 Kumar_2012 RNA-Seq Based Transcriptional Map of Bovine Respiratory Disease Pathogen “Histophilus somni 2336” Kumar, Ranjit; Lawrence, Mark L.; Watt, James; Cooksey, Amanda M.; Burgess, Shane C.; Nanduri, Bindu 2012 2012-01-20 COMM-USE N PMC3262788 22276113.0 10.1371/journal.pone.0029435 uu1oz2ei 0.683558 Chen_2009
16 Alessio_2020 A Single Cell but Many Different Transcripts: A Journey into the World of Long Non-Coding RNAs Alessio, Enrico; Bonadio, Raphael Severino; Buson, Lisa; Chemello, Francesco; Cagnin, Stefano 2020 2020-01-01 COMM-USE N PMC6982300 31906285.0 10.3390/ijms21010302 gnn9lh56 0.661236 Wang_2017, Trobaugh_2017, Wang_2007, Haasnoot_2010 Trypsteen_2016
17 Silverman_2018 Isolation and sequencing of AGO-bound RNAs reveals characteristics of mammalian stem-loop processing in vivo Ian M. Silverman; Sager J. Gosai; Nicholas Vrettos; Shawn W. Foley; Nathan D. Berkowitz; Zissimos Mourelatos; Brian D. Gregory 2018 2018-04-06 BioRxiv N 10.1101/294488 1pbshnw9 0.656086 Wang_2007, Wang_2017, Trobaugh_2017 Trypsteen_2016, Sun_J_2013
18 Yu_H_2007 Transcript-level annotation of Affymetrix probesets improves the interpretation of gene expression data Yu, Hui; Wang, Feng; Tu, Kang; Xie, Lu; Li, Yuan-Yuan; Li, Yi-Xue 2007 2007-06-11 COMM-USE N PMC1913542 17559689.0 10.1186/1471-2105-8-194 qbldmef1 0.643202 Filby_2007
19 Yokobayashi_2019 Aptamer-based and aptazyme-based riboswitches in mammalian cells Yokobayashi, Yohei 2019 2019-10-31 PMC N PMC7108311 31238268.0 10.1016/j.cbpa.2019.05.018 vovas81d 0.635729 Trobaugh_2017, Atianand_2014, Haasnoot_2010
20 Patil_2013 Gene regulation by noncoding RNAs Patil, Veena S.; Zhou, Rui; Rana, Tariq M. 2013 2013-10-28 PMC N PMC4721600 24164576.0 10.3109/10409238.2013.844092 on2y0769 0.635729 Trobaugh_2017, Wang_2017, Zhang_2013, Poltronieri_2015, Atianand_2014 Zhang_2015, Yang_2017
21 Poltronieri_2015 RNA Viruses: RNA Roles in Pathogenesis, Coreplication and Viral Load Poltronieri, Palmiro; Sun, Binlian; Mallardo, Massimo 2015 2015-10-23 NONCOMM N PMC4763971 27047253.0 10.2174/1389202916666150707160613 259cspey 0.632355 Trobaugh_2017, Herbert_2016 Trobaugh_2017
22 Herbert_2016 A Tale of Two RNAs during Viral Infection: How Viruses Antagonize mRNAs and Small Non-Coding RNAs in The Host Cell Herbert, Kristina M.; Nag, Anita 2016 2016-06-02 COMM-USE N PMC4926174 27271653.0 10.3390/v8060154 btwn1jy0 0.623838 Trobaugh_2017
23 Faraldi_2018 Chapter Four Free Circulating miRNAs Measurement in Clinical Settings The Still Unsolved Issue of the Normalization Faraldi, Martina; Gomarasca, Marta; Banfi, Giuseppe; Lombardi, Giovanni 2018 2018-12-31 PMC N PMC7112021 30342709.0 10.1016/bs.acc.2018.07.003 kxq5pw7b 0.607886 Haasnoot_2010, Trobaugh_2017, Atianand_2014 Wei_B_2015
24 Trobaugh_2017 MicroRNA Regulation of RNA Virus Replication and Pathogenesis Trobaugh, Derek W.; Klimstra, William B. 2017 2017-01-31 None N PMC5836316 27989642.0 10.1016/j.molmed.2016.11.003 sblrsi6y 0.557591 Herbert_2016, Haasnoot_2010 Haasnoot_2010, Trypsteen_2016, Poltronieri_2015
25 Gong_2005 The role of small RNAs in human diseases: Potential troublemaker and therapeutic tools Gong, Huan; Liu, Chang‐Mei; Liu, De‐Pei; Liang, Chih‐Chuan 2005 2005-01-06 PMC N PMC7168392 15637700.0 10.1002/med.20023 we86g46d 0.539715 Trobaugh_2017, Haasnoot_2010, Herbert_2016, Poltronieri_2015
26 Sun_J_2013 Cellular microRNA miR-181b Inhibits Replication of Mink Enteritis Virus by Repression of Non-Structural Protein 1 Translation Sun, Jia-zeng; Wang, Jigui; Yuan, Daoli; Wang, Shuang; Li, Zhili; Yi, Bao; Mao, Yaping; Hou, Qiang; Liu, Weiquan 2013 2013-12-11 COMM-USE N PMC3859502 24349084.0 10.1371/journal.pone.0081515 36f6amze 0.534674 Trobaugh_2017, Haasnoot_2010, Herbert_2016
27 Giovannini-Chami_2011 Impact of MicroRNA in Normal and Pathological Respiratory Epithelia Giovannini-Chami, Lisa; Grandvaux, Nathalie; Zaragosi, Laure-Emmanuelle; Robbe-Sermesant, Karine; Marcet, Brice; Cardinaud, Bruno; Coraux, Christelle; Berthiaume, Yves; Waldmann, Rainer; Mari, Bernard; Barbry, Pascal 2011 2011-01-19 PMC N PMC7121186 21594785.0 10.1007/978-1-61779-117-8_12 avquc034 0.528215 Trobaugh_2017, Haasnoot_2010, Atianand_2014 Trypsteen_2016
28 Etebari_2016 Identification of Aedes aegypti Long Intergenic Non-coding RNAs and Their Association with Wolbachia and Dengue Virus Infection Etebari, Kayvan; Asad, Sultan; Zhang, Guangmei; Asgari, Sassan 2016 2016-10-19 COMM-USE N PMC5070814 27760142.0 10.1371/journal.pntd.0005069 dwdh5xn6 0.515661 Trobaugh_2017, Haasnoot_2010, Herbert_2016
29 Diallo_2005 RNA Interference: RNAid for Future Therapeutics? Diallo, Mustapha; Schmitz, Katja; Schepers, Ute 2005 2005-01-01 PMC N PMC7121305 10.1385/1-59259-893-5:167 owwi99m8 0.506218 Haasnoot_2010, Trobaugh_2017, Atianand_2014 Rothe_2010, Ma_Y_2007, Leung_2005, Haddad_2011
30 Lemler_2017 Elucidating the Role of Host Long Non-Coding RNA during Viral Infection: Challenges and Paths Forward Lemler, David J.; Brochu, Hayden N.; Yang, Fang; Harrell, Erin A.; Peng, Xinxia 2017 2017-10-20 COMM-USE N PMC5748604 29053596.0 10.3390/vaccines5040037 l8j8b3g6 0.434563 Trobaugh_2017, Haasnoot_2010 Trypsteen_2016, Liui_2020
31 Cann_2016 Chapter 5 Expression Cann, Alan J. 2016 2016-12-31 PMC N 10.1016/b978-0-12-801946-7.00005-5 d47rpzcs 0.433712 Trobaugh_2017, Haasnoot_2010, Herbert_2016
32 Wang_2007 Relationship between mRNA stability and intron presence Wang, Hai-Fang; Feng, Liang; Niu, Deng-Ke 2007 2007-03-02 PMC N PMC7092898 17207776.0 10.1016/j.bbrc.2006.12.184 el7bdkcf 0.432824 Trobaugh_2017 Gu_K_2018
33 Peng_2011 Integrative Deep Sequencing of the Mouse Lung Transcriptome Reveals Differential Expression of Diverse Classes of Small RNAs in Response to Respiratory Virus Infection Peng, Xinxia; Gralinski, Lisa; Ferris, Martin T.; Frieman, Matthew B.; Thomas, Matthew J.; Proll, Sean; Korth, Marcus J.; Tisoncik, Jennifer R.; Heise, Mark; Luo, Shujun; Schroth, Gary P.; Tumpey, Terrence M.; Li, Chengjun; Kawaoka, Yoshihiro; Baric, Ralph S.; Katze, Michael G. 2011 2011-11-15 NONCOMM N PMC3221602 22086488.0 10.1128/mbio.00198-11 hzh5tyoo 0.426553 Trobaugh_2017, Herbert_2016, Haasnoot_2010
34 Kher_2011 7 Antisense Oligonucleotides and RNA Interference Kher, Gitanjali; Trehan, Sonia; Misra, Ambikanandan 2011 2011-12-31 PMC N PMC7150054 10.1016/b978-0-12-384964-9.00007-4 apl5nw0h 0.416435 Trobaugh_2017, Bennasser_2012, Haasnoot_2010 Haddad_2011, Rothe_2010, Leung_2005
35 Noh_H_2018 Network perturbation analysis of gene transcriptional profiles reveals protein targets and mechanism of action of drugs and influenza A viral infection Noh, Heeju; Shoemaker, Jason E; Gunawan, Rudiyanto 2018 2018-04-06 NONCOMM N PMC5887474 29325153.0 10.1093/nar/gkx1314 j80hnhpb 0.397201 Trobaugh_2017, Haasnoot_2010, Atianand_2014, Chasman_2016 Trypsteen_2016, Chasman_2016
36 Kurreck_2009 RNA Interference: From Basic Research to Therapeutic Applications Kurreck, Jens 2009 2009-01-19 PMC N PMC7159607 19153977.0 10.1002/anie.200802092 lthz75oc 0.394272 Trobaugh_2017, Haasnoot_2010
37 Winterling_2013 Evidence for a crucial role of a host non-coding RNA in influenza A virus replication Winterling, Carla; Koch, Manuel; Koeppel, Max; Garcia-Alcalde, Fernando; Karlas, Alexander; Meyer, Thomas F 2013 2013-12-20 None N PMC3929426 24440876.0 10.4161/rna.27504 xygoyhmc 0.391938 Trobaugh_2017, Haasnoot_2010, Herbert_2016
38 Haasnoot_2010 RNAi and Cellular miRNAs in Infections by Mammalian Viruses Haasnoot, Joost; Berkhout, Ben 2010 2010-11-19 PMC N PMC7120436 21431677.0 10.1007/978-1-61779-037-9_2 tg1310br 0.385299 Trobaugh_2017, Herbert_2016 Trobaugh_2017, Carnero_2011
39 Juranic_Lisnic_2013 Dual Analysis of the Murine Cytomegalovirus and Host Cell Transcriptomes Reveal New Aspects of the Virus-Host Cell Interface Juranic Lisnic, Vanda; Babic Cac, Marina; Lisnic, Berislav; Trsan, Tihana; Mefferd, Adam; Das Mukhopadhyay, Chitrangada; Cook, Charles H.; Jonjic, Stipan; Trgovcich, Joanne 2013 2013-09-26 COMM-USE N PMC3784481 24086132.0 10.1371/journal.ppat.1003611 jvl63652 0.363494 Trobaugh_2017, Haasnoot_2010, Herbert_2016 Trypsteen_2016
40 Haasnoot_2006 RNA Interference: Its Use as Antiviral Therapy Haasnoot, J.; Berkhout, B. 2006 2006-01-01 PMC N PMC7120273 16594614.0 10.1007/3-540-27262-3_7 2khymh2y 0.362708 Trobaugh_2017, Herbert_2016, Haasnoot_2010 Rothe_2010, Ma_Y_2007, Haddad_2011
41 Berger_2010 Possibilities for RNA Interference in Developing Hepatitis C Virus Therapeutics Berger, Kristi L.; Randall, Glenn 2010 2010-08-06 COMM-USE N PMC3185727 21994699.0 10.3390/v2081647 fmh6wmzk 0.359393 Trobaugh_2017, Haasnoot_2010, Herbert_2016 Haddad_2011, Rothe_2010, Ma_Y_2007
42 Fujita_2013 RNAi Therapeutic Platforms for Lung Diseases Fujita, Yu; Takeshita, Fumitaka; Kuwano, Kazuyoshi; Ochiya, Takahiro 2013 2013-02-06 COMM-USE N PMC3816685 24275949.0 10.3390/ph6020223 ygfnkgqp 0.358387 Trobaugh_2017, Haasnoot_2010, Lieberman_2003 Rothe_2010, Ma_Y_2007, Hung_2006
43 Carnero_2011 Adenovirus and miRNAs Carnero, Elena; Sutherland, James D.; Fortes, Puri 2011 2011-12-31 PMC N PMC7102710 21621026.0 10.1016/j.bbagrm.2011.05.004 2hb427cv 0.358246 Trobaugh_2017, Herbert_2016, Haasnoot_2010 Haddad_2011
44 Wex_T_1997 The activation-dependent induction of APN-(CD13) in T-cells is controlled at different levels of gene expression Wex, Th; Bühling, F; Arndt, M; Frank, K; Ansorge, S; Lendeckel, U 1997 1997-07-21 PMC N 9257688.0 10.1016/s0014-5793(97)00738-2 ebhg0v5d 0.337817 Wang_2007, Brake_2008, Bedadala_2007
45 Tallam_2016 Gene Regulatory Network Inference of Immunoresponsive Gene 1 (IRG1) Identifies Interferon Regulatory Factor 1 (IRF1) as Its Transcriptional Regulator in Mammalian Macrophages Tallam, Aravind; Perumal, Thaneer M.; Antony, Paul M.; Jäger, Christian; Fritz, Joëlle V.; Vallar, Laurent; Balling, Rudi; del Sol, Antonio; Michelucci, Alessandro 2016 2016-02-12 COMM-USE N PMC4752512 26872335.0 10.1371/journal.pone.0149050 z245sb3s 0.333683 Trobaugh_2017, Haasnoot_2010, Atianand_2014
46 Aronin_2006 Target selectivity in mRNA silencing Aronin, N 2006 2006-02-16 PMC N PMC7091803 16520821.0 10.1038/sj.gt.3302726 e8q7wq0h 0.327532 Lieberman_2003, Trobaugh_2017, Bennasser_2012 Lu_P_2008, Ma_Y_2007, Davidson_2011
47 Chang_2013 Next-Generation Sequencing of Small RNAs from HIV-Infected Cells Identifies Phased microRNA Expression Patterns and Candidate Novel microRNAs Differentially Expressed upon Infection Chang, Stewart T.; Thomas, Matthew J.; Sova, Pavel; Green, Richard R.; Palermo, Robert E.; Katze, Michael G. 2013 2013-02-05 NONCOMM N PMC3560529 23386435.0 10.1128/mbio.00549-12 t98g8z7i 0.320536 Trobaugh_2017, Haasnoot_2010, Herbert_2016 Trypsteen_2016