Topic 13 -- Abstracts with Biological Entities (English) - 75 Topics / Sub-Topic Model 21 - 15 Topics

cite ad title authors publish year publish time dataset abstract mentions covid pmcid pubmed id doi cord uid topic weight Similarity scispacy Similarity specter
1 He_J_2009 Simultaneous Detection of CDC Category “A” DNA and RNA Bioterrorism Agents by Use of Multiplex PCR & RT-PCR Enzyme Hybridization Assays He, Jie; Kraft, Andrea J.; Fan, Jiang; Van Dyke, Meredith; Wang, Lihua; Bose, Michael E.; Khanna, Marilyn; Metallo, Jacob A.; Henrickson, Kelly J. 2009 2009-10-20 COMM-USE N PMC2836126 20224751.0 10.3390/v1030441 fhp3pbts 0.676061 Borja_1992, Hull_2008, Dinh_2011, Chen_2010 Reddy_2011
2 Panning_2007 Diagnostic Reverse-Transcription Polymerase Chain Reaction Kit for Filoviruses Based on the Strain Collections of all European Biosafety Level 4 Laboratories Panning, Marcus; Laue, Thomas; Ölschlager, Stephan; Eickmann, Markus; Becker, Stephan; Raith, Sabine; Courbot, Marie-Claude Georges; Nilsson, Mikael; Gopal, Robin; Lundkvist, Ake; di Caro, Antonino; Brown, David; Meyer, Hermann; Lloyd, Graham; Kümmerer, Beate M.; Günther, Stephan; Drosten, Christian 2007 2007-11-15 PMC N PMC7109892 17940950.0 10.1086/520600 2z2ktxmr 0.666362 Hohdatsu_1992, Njiru_2008
3 Tsai_2019 An RT-PCR panel for rapid serotyping of dengue virus serotypes 1 to 4 in human serum and mosquito on a field-deployable PCR system Tsai, Jih-Jin; Liu, Wei-Liang; Lin, Ping-Chang; Huang, Bo-Yi; Tsai, Ching-Yi; Chou, Pin-Hsing; Lee, Fu-Chun; Ping, Chia-Fong; Lee, Pei-Yu Alison; Liu, Li-Teh; Chen, Chun-Hong 2019 2019-03-25 COMM-USE N PMC6433249 30908535.0 10.1371/journal.pone.0214328 z6ndprmm 0.608829 Dinh_2011, Kang_2010 Neeraja_2015
4 Wilkes_2017 Rapid and sensitive insulated isothermal PCR for point-of-need feline leukaemia virus detection Wilkes, Rebecca P; Anis, Eman; Dunbar, Dawn; Lee, Pei-Yu A; Tsai, Yun-Long; Lee, Fu-Chun; Chang, Hsiao-Fen G; Wang, Hwa-Tang T; Graham, Elizabeth M 2017 2017-06-07 NONCOMM N PMC5871024 28589743.0 10.1177/1098612x17712847 ox1a5lhm 0.601245 Dinh_2011, Falcone_1997, Escutenaire_2006 Stranieri_2017
5 Hasan_2018 A novel real-time PCR assay panel for detection of common respiratory pathogens in a convenient, strip-tube array format Mohammad Rubayet Hasan; Hassan Al Mana; Virginia Young; Patrick Tang; Eva Thomas; Rusung Tan; Peter Tilley 2018 2018-10-29 BioRxiv N 10.1101/455568 aluuvve7 0.568699 Benson_2008, Wang_2018, Lau_L_2003, Jiang_2004, Vemulapalli_2009 Hasan_2019, Zhao_2019, Nemoto_2015
6 Hasan_2019 A novel real-time PCR assay panel for detection of common respiratory pathogens in a convenient, strip-tube array format Hasan, Mohammad Rubayet; Al Mana, Hassan; Young, Virginia; Tang, Patrick; Thomas, Eva; Tan, Rusung; Tilley, Peter 2019 2019-03-31 PMC N PMC7113679 30578898.0 10.1016/j.jviromet.2018.12.013 iy10z1kj 0.555124 Benson_2008, Wang_2018, Lau_L_2003, Jiang_2004, Nitsche_2004 Hasan_2018, Li_J_2013, Zhao_2019
7 Zhang_2019 Development and evaluation of a real-time RT-PCR and a field-deployable RT-insulated isothermal PCR for the detection of Seneca Valley virus Zhang, Jianqiang; Nfon, Charles; Tsai, Chuan-Fu; Lee, Chien-Hsien; Fredericks, Lindsay; Chen, Qi; Sinha, Avanti; Bade, Sarah; Harmon, Karen; Piñeyro, Pablo; Gauger, Phillip; Tsai, Yun-Long; Wang, Hwa-Tang Thomas; Lee, Pei-Yu Alison 2019 2019-05-24 COMM-USE N PMC6534938 31126297.0 10.1186/s12917-019-1927-4 htukgd5m 0.538553 Dinh_2011 Gueudin_2003, Niu_P_2016
8 Boyle_2014 Rapid Detection of Mycobacterium tuberculosis by Recombinase Polymerase Amplification Boyle, David S.; McNerney, Ruth; Teng Low, Hwee; Leader, Brandon Troy; Pérez-Osorio, Ailyn C.; Meyer, Jessica C.; O'Sullivan, Denise M.; Brooks, David G.; Piepenburg, Olaf; Forrest, Matthew S. 2014 2014-08-13 COMM-USE N PMC4138011 25118698.0 10.1371/journal.pone.0103091 jg4txydn 0.520728 Tan_J_2011, Wang_2018
9 Carossino_2017 Evaluation of a field-deployable reverse transcription-insulated isothermal PCR for rapid and sensitive on-site detection of Zika virus Carossino, Mariano; Li, Yanqiu; Lee, Pei-Yu A.; Tsai, Chuan-Fu; Chou, Pin-Hsing; Williams, Dennis; Skillman, Ashley; Frank Cook, R.; Brown, Grayson; Chang, Hsiao-Fen G.; Wang, Hwa-Tang T.; Balasuriya, Udeni B. R. 2017 2017-12-19 COMM-USE N PMC5735522 29258444.0 10.1186/s12879-017-2852-4 bbgcen1u 0.493831 Hull_2008 da_Silva_2019, Kurosaki_2017, Zhang_2014
10 James_2018 Ebolavirus diagnosis made simple, comparable and faster than molecular detection methods: preparing for the future James, Ameh S.; Todd, Shawn; Pollak, Nina M.; Marsh, Glenn A.; Macdonald, Joanne 2018 2018-04-23 COMM-USE N PMC5914028 29685158.0 10.1186/s12985-018-0985-8 p2qhnt4f 0.493264 Dinh_2011
11 Tsai_2019 A fully automated sample-to-answer PCR system for easy and sensitive detection of dengue virus in human serum and mosquitos Tsai, Jih-Jin; Liu, Wei-Liang; Lin, Ping-Chang; Huang, Bo-Yi; Tsai, Ching-Yi; Lee, Pei-Yu Alison; Tsai, Yun-Long; Chou, Pin-Hsing; Chung, Simon; Liu, Li-Teh; Chen, Chun-Hong 2019 2019-07-10 COMM-USE N PMC6619671 31291289.0 10.1371/journal.pone.0218139 518giv0m 0.490991 Wang_2018, Dinh_2011, Nitsche_2004, Chen_2018 Nemoto_2015
12 Chen_2015 Development and Evaluation of a SYBR Green–Based Real-Time Multiplex RT-PCR Assay for Simultaneous Detection and Serotyping of Dengue and Chikungunya Viruses Chen, Huixin; Parimelalagan, Mariya; Lai, Yee Ling; Lee, Kim Sung; Koay, Evelyn Siew-Chuan; Hapuarachchi, Hapuarachchige C.; Ng, Lee Ching; Ho, Phui San; Chu, Justin Jang Hann 2015 2015-11-30 PMC N PMC7106138 26455921.0 10.1016/j.jmoldx.2015.06.008 z3js3mr4 0.432745 Yang_2009, Nemoto_2015, Neeraja_2015
13 Soltan_2016 Comparison of electron microscopy, ELISA, real time RT-PCR and insulated isothermal RT-PCR for the detection of Rotavirus group A (RVA) in feces of different animal species Soltan, Mohamed A.; Tsai, Yun-Long; Lee, Pei-Yu A.; Tsai, Chuan-Fu; Chang, Hsiao-Fen G.; Wang, Hwa-Tang T.; Wilkes, Rebecca P. 2016 2016-09-30 PMC N PMC7113751 27180038.0 10.1016/j.jviromet.2016.05.006 6lxc2rj2 0.428098 Dinh_2011, Benson_2008, Vemulapalli_2009, Wang_2018, Fan_Q_2012 Gueudin_2003, Decaro_2004
14 Dedkov_2019 Development and Evaluation of a One-Step Quantitative RT-PCR Assay for Detection of Lassa Virus Dedkov, Vladimir G.; Magassouba, N.’Faly; Safonova, Marina V.; Naydenova, Ekaterina V.; Ayginin, Andrey A.; Soropogui, Barre; Kourouma, Fode; Camara, Amara B.; Camara, Jacob; Kritzkiy, Andrey A.; Tuchkov, Igor V.; Shchelkanov, Mikhail Yu.; Maleev, Victor V. 2019 2019-09-30 PMC N PMC7113850 31170468.0 10.1016/j.jviromet.2019.113674 iqwojhq2 0.419891 Hakhverdyan_2005
15 Alfaro-Núñez_2014 Validation of a sensitive PCR assay for the detection of Chelonid fibropapilloma-associated herpesvirus in latent turtle infections Alfaro-Núñez, Alonzo; Gilbert, M. Thomas P. 2014 2014-09-15 None N PMC7119791 24882497.0 10.1016/j.jviromet.2014.05.019 exge1suy 0.415412 Benson_2008, Dinh_2011, Lee_W_2008
16 Ambagala_2016 Field‐Deployable Reverse Transcription‐Insulated Isothermal PCR (RT‐iiPCR) Assay for Rapid and Sensitive Detection of Foot‐and‐Mouth Disease Virus Ambagala, A.; Fisher, M.; Goolia, M.; Nfon, C.; Furukawa‐Stoffer, T.; Ortega Polo, R.; Lung, O. 2016 2016-09-03 PMC N PMC7169878 27589902.0 10.1111/tbed.12554 hp1iw7np 0.404291 Dinh_2011
17 Kurosaki_2017 Development and evaluation of a rapid molecular diagnostic test for Zika virus infection by reverse transcription loop-mediated isothermal amplification Kurosaki, Yohei; Martins, Danyelly Bruneska Gondim; Kimura, Mayuko; Catena, Andriu dos Santos; Borba, Maria Amélia Carlos Souto Maior; Mattos, Sandra da Silva; Abe, Haruka; Yoshikawa, Rokusuke; de Lima Filho, José Luiz; Yasuda, Jiro 2017 2017-10-18 COMM-USE N PMC5647432 29044149.0 10.1038/s41598-017-13836-9 lrkscs71 0.395581 Dinh_2011 Nemoto_2015, Malik_2013
18 Zhang_2016 Evaluation of two singleplex reverse transcription-Insulated isothermal PCR tests and a duplex real-time RT-PCR test for the detection of porcine epidemic diarrhea virus and porcine deltacoronavirus Zhang, Jianqiang; Tsai, Yun-Long; Lee, Pei-Yu Alison; Chen, Qi; Zhang, Yan; Chiang, Cheng-Jen; Shen, Yu-Han; Li, Fu-Chun; Chang, Hsiao-Fen Grace; Gauger, Phillip C.; Harmon, Karen M.; Wang, Hwa-Tang Thomas 2016 2016-08-31 PMC N PMC7113669 27060624.0 10.1016/j.jviromet.2016.03.016 n0gv4op6 0.385140 Dinh_2011, Fan_Q_2012, Vemulapalli_2009, Chen_2010, Ren_X_2011 Wang_2018, Li_H_2019
19 Neeraja_2015 Rapid detection and differentiation of dengue virus serotypes by NS1 specific reverse transcription loop-mediated isothermal amplification (RT-LAMP) assay in patients presenting to a tertiary care hospital in Hyderabad, India Neeraja, M.; Lakshmi, V.; Lavanya, Vanjari; Priyanka, E.N.; Parida, M.M.; Dash, P.K.; Sharma, Shashi; Rao, P.V. Lakshmana; Reddy, Gopal 2015 2015-01-31 PMC N PMC7119600 25455901.0 10.1016/j.jviromet.2014.10.005 3lujp0oy 0.359419 Dinh_2011, Chen_2010, Ren_X_2011 Shirato_2007, Nemoto_2015
20 McClenahan_2009 A capsid gene-based real-time reverse transcription polymerase chain reaction assay for the detection of marine vesiviruses in the Caliciviridae McClenahan, Shasta D.; Bok, Karin; Neill, John D.; Smith, Alvin W.; Rhodes, Crystal R.; Sosnovtsev, Stanislav V.; Green, Kim Y.; Romero, Carlos H. 2009 2009-10-31 PMC N 19410604.0 10.1016/j.jviromet.2009.04.026 68du67lw 0.353491 Dinh_2011, Pulford_2004
21 Koo_B_2018 CRISPR/dCas9-mediated biosensor for detection of tick-borne diseases Koo, Bonhan; Kim, Da-eun; Kweon, Jiyeon; Jin, Choong Eun; Kim, Sung-Han; Kim, Yongsub; Shin, Yong 2018 2018-11-10 PMC N PMC7126152 10.1016/j.snb.2018.06.069 kgzbd6w3 0.345687 Dinh_2011, Wong_2007, Erlandsson_2011 Zhao_2011
22 Pongsiri_2012 Multiplex real–time RT–PCR for detecting chikungunya virus and dengue virus Pongsiri, Piyathida; Praianantathavorn, Kesmanee; Theamboonlers, Apiradee; Payungporn, Sunchai; Poovorawan, Yong 2012 2012-05-31 PMC N PMC7128799 22546647.0 10.1016/s1995-7645(12)60055-8 u43ehmut 0.344385 Nemoto_2015, Shirato_2007
23 McAvin_2007 Deployable, Field-Sustainable, Reverse Transcription-Polymerase Chain Reaction Assays for Rapid Screening and Serotype Identification of Dengue Virus in Mosquitoes McAvin, James C.; Powers, Michael D.; Blow, Jamie A.; Putnam, John L.; Huff, William B.; Swaby, James A. 2007 2007-03-23 PMC N PMC7110365 17436782.0 10.7205/milmed.172.3.329 18azv910 0.338993 Dinh_2011 Kurosaki_2017, Nemoto_2015, Malik_2013
24 Chan_2016 A Rapid and Low-Cost PCR Thermal Cycler for Infectious Disease Diagnostics Chan, Kamfai; Wong, Pui-Yan; Yu, Peter; Hardick, Justin; Wong, Kah-Yat; Wilson, Scott A.; Wu, Tiffany; Hui, Zoe; Gaydos, Charlotte; Wong, Season S. 2016 2016-02-12 COMM-USE N PMC4752298 26872358.0 10.1371/journal.pone.0149150 pt4jsr6d 0.326035 Dinh_2011, Jeong_2015, Wang_2018 Nemoto_2015, Li_J_2012, Zambenedetti_2017
25 Zhou_2020 Development and evaluation of a rapid detection assay for severe fever with thrombocytopenia syndrome virus based on reverse-transcription recombinase polymerase amplification Zhou, Jingyu; Wang, Qiujing; Zhu, Lijun; Li, Shibo; Li, Wei; Fu, Yongfeng; Cheng, Xunjia 2020 2020-04-21 PMC N 10.1016/j.mcp.2020.101580 f9zmztef 0.325385 Lau_L_2003, Jiang_2004, Li_H_2019, Wang_2018, Dinh_2011
26 Zhu_H_2020 IoT PCR for pandemic disease detection and its spread monitoring Zhu, Hanliang; Podesva, Pavel; Liu, Xiaocheng; Zhang, Haoqing; Teply, Tomas; Xu, Ying; Chang, Honglong; Qian, Airong; Lei, Yingfeng; Li, Yu; Niculescu, Andreea; Iliescu, Ciprian; Neuzil, Pavel 2020 2020-01-15 None N PMC7125887 10.1016/j.snb.2019.127098 ityhcak7 0.317496 da_Silva_2019
27 Go_Y_2017 Evaluation and Clinical Validation of Two Field–Deployable Reverse Transcription-Insulated Isothermal PCR Assays for the Detection of the Middle East Respiratory Syndrome–Coronavirus Go, Yun Young; Kim, Yeon-Sook; Cheon, Shinhye; Nam, Sangwoo; Ku, Keun Bon; Kim, Meehyein; Cho, Nam Hyuk; Park, Hyun; Alison Lee, Pei-Yu; Lin, Yu-Chun; Tsai, Yun-Long; Thomas Wang, Hwa-Tang; Balasuriya, Udeni B.R. 2017 2017-11-30 PMC N PMC7106309 28807812.0 10.1016/j.jmoldx.2017.06.007 hm4b069d 0.316438 Dinh_2011 Shirato_2014
28 Abd_El_Wahed_2015 Recombinase Polymerase Amplification Assay for Rapid Diagnostics of Dengue Infection Abd El Wahed, Ahmed; Patel, Pranav; Faye, Oumar; Thaloengsok, Sasikanya; Heidenreich, Doris; Matangkasombut, Ponpan; Manopwisedjaroen, Khajohnpong; Sakuntabhai, Anavaj; Sall, Amadou A.; Hufert, Frank T.; Weidmann, Manfred 2015 2015-06-15 COMM-USE N PMC4468249 26075598.0 10.1371/journal.pone.0129682 pof78bwb 0.309882 Dinh_2011, Vemulapalli_2009, Kang_2010, Wang_2018, Jiang_2004 Nemoto_2015