Topic 02 -- Abstracts with Biological Entities (English) - 75 Topics / Sub-Topic Model 21 - 15 Topics

cite ad title authors publish year publish time dataset abstract mentions covid pmcid pubmed id doi cord uid topic weight Similarity scispacy Similarity specter
1 Sidoti_2012 Alternative Molecular Tests for Virological Diagnosis Sidoti, Francesca; Bergallo, Massimiliano; Costa, Cristina; Cavallo, Rossana 2012 2012-04-09 PMC N PMC7091206 22484997.0 10.1007/s12033-012-9533-8 36io7zsm 0.985786 Monis_2006, Wang_2018, Zanoli_2012 Oriero_2015
2 Zanoli_2012 Isothermal Amplification Methods for the Detection of Nucleic Acids in Microfluidic Devices Zanoli, Laura Maria; Spoto, Giuseppe 2012 2012-12-27 COMM-USE N PMC4263587 25587397.0 10.3390/bios3010018 thx9zh11 0.943014 Liu_H_2006, Monis_2006, Wang_2018 Zhang_2019, Mori_2006, Wang_2011, Mauk_2015
3 Ginocchio_2004 Life beyond PCR: alternative target amplification technologies for the diagnosis of infectious diseases, part I 1 1 Editor's Note: Part II of this article will be published in the September 1 issue of CMN (vol. 26, no. 17). Ginocchio, Christine C. 2004 2004-08-15 PMC N PMC7124326 10.1016/j.clinmicnews.2004.08.001 j33pov9p 0.930432 Monis_2006, Sidoti_2012 Mikel_2015, Njiru_2008
4 Monis_2006 Nucleic acid amplification-based techniques for pathogen detection and identification Monis, Paul T; Giglio, Steven 2006 2006-01-31 PMC N PMC7106022 16169776.0 10.1016/j.meegid.2005.08.004 dmg5xye5 0.926571 Wang_2018, Sidoti_2012, Chen_2018 Sidoti_2012, Pyrc_2011, Zhang_2019
5 Dutse_2011 Microfluidics-Based Lab-on-Chip Systems in DNA-Based Biosensing: An Overview Dutse, Sabo Wada; Yusof, Nor Azah 2011 2011-05-27 COMM-USE N PMC3231440 22163925.0 10.3390/s110605754 qi9dtaow 0.919808 Wang_2011, Yeung_2006, Wang_2012
6 LaBarre_2011 A Simple, Inexpensive Device for Nucleic Acid Amplification without Electricity—Toward Instrument-Free Molecular Diagnostics in Low-Resource Settings LaBarre, Paul; Hawkins, Kenneth R.; Gerlach, Jay; Wilmoth, Jared; Beddoe, Andrew; Singleton, Jered; Boyle, David; Weigl, Bernhard 2011 2011-05-09 COMM-USE N PMC3090398 21573065.0 10.1371/journal.pone.0019738 qol5poan 0.897975 Zanoli_2012, Chen_2018, Lee_W_2008, Kim_K_2007 Curtis_2012, Zhang_2019, Oriero_2015
7 Mori_2009 Loop-mediated isothermal amplification (LAMP): a rapid, accurate, and cost-effective diagnostic method for infectious diseases Mori, Yasuyoshi; Notomi, Tsugunori 2009 2009-12-31 None N PMC7087713 19396514.0 10.1007/s10156-009-0669-9 ombgq6rm 0.854049 da_Silva_2019, Pyrc_2011, Lucchi_2010
8 Chang_2012 Diagnostic Devices for Isothermal Nucleic Acid Amplification Chang, Chia-Chen; Chen, Chien-Cheng; Wei, Shih-Chung; Lu, Hui-Hsin; Liang, Yang-Hung; Lin, Chii-Wann 2012 2012-06-14 COMM-USE N PMC3436031 22969402.0 10.3390/s120608319 g4aw4ves 0.843888 Monis_2006, Sidoti_2012 Zanoli_2012, Sidoti_2012, Mori_2006, Goo_N_2016
9 Malik_2020 Chapter 13 Biotechnological innovations in farm and pet animal disease diagnosis Malik, Yashpal Singh; Verma, Atul; Kumar, Naveen; Deol, Pallavi; Kumar, Deepak; Ghosh, Souvik; Dhama, Kuldeep 2020 2020-12-31 PMC N PMC7150312 10.1016/b978-0-12-816352-8.00013-8 p8pns7r9 0.839618 Monis_2006 Wu_M_2018
10 Verosloff_2018 PLANT-Dx: A Molecular Diagnostic for Point of Use Detection of Plant Pathogens M. Verosloff; J. Chappell; K. L. Perry; J. R. Thompson; J. B. Lucks 2018 2018-12-17 BioRxiv N 10.1101/498998 bzusp0lh 0.834641 Malik_2020
11 Wang_2011 Sample Pretreatment and Nucleic Acid-Based Detection for Fast Diagnosis Utilizing Microfluidic Systems Wang, Jung-Hao; Wang, Chih-Hung; Lee, Gwo-Bin 2011 2011-12-07 PMC N PMC7088154 22146901.0 10.1007/s10439-011-0473-4 99cnvvmy 0.814232 Zanoli_2012, Yeung_2006, Mauk_2015, Zhang_2019
12 Gunson_2006 Practical experience of high throughput real time PCR in the routine diagnostic virology setting Gunson, R.N.; Collins, T.C.; Carman, W.F. 2006 2006-04-30 PMC N PMC7108255 16460999.0 10.1016/j.jcv.2005.12.006 rn1dow26 0.814180 Yang_2009
13 Dou_M_2014 A Versatile PDMS/Paper Hybrid Microfluidic Platform for Sensitive Infectious Disease Diagnosis Dou, Maowei; Dominguez, Delfina\nC.; Li, XiuJun; Sanchez, Juan; Scott, Gabriel 2014 2014-07-14 PMC N PMC4144724 25019330.0 10.1021/ac5021694 j3a6rwtg 0.813293 Mori_2009 Zhang_2019, Wang_2012
14 Jayamohan_2012 Applications of Microfluidics for Molecular Diagnostics Jayamohan, Harikrishnan; Sant, Himanshu J.; Gale, Bruce K. 2012 2012-08-09 PMC N PMC7121806 23329451.0 10.1007/978-1-62703-134-9_20 ylxqh3sj 0.812442 Wang_2012, Wang_2011
15 Zhang_2019 LAMP-on-a-chip: Revising microfluidic platforms for loop-mediated DNA amplification Zhang, Haoqing; Xu, Ying; Fohlerova, Zdenka; Chang, Honglong; Iliescu, Ciprian; Neuzil, Pavel 2019 2019-04-30 PMC N PMC7112807 10.1016/j.trac.2019.01.015 q4neat3x 0.809523 Monis_2006, Sidoti_2012 Zanoli_2012, Mori_2006, Curtis_2012
16 Woo_C_2020 Sensitive one-step isothermal detection of pathogen-derived RNAs Chang Ha Woo; Sungho Jang; Giyoung Shin; Gyoo Yeol Jung; Jeong Wook Lee 2020 2020-03-09 BioRxiv Y 10.1101/2020.03.05.20031971 1uqjmeic 0.792348 Nemoto_2015, Stranieri_2017, Malik_2013
17 Nargessi_2010 MagaZorb: A simple tool for rapid isolation of viral nucleic acids Nargessi, Dokhi; Ou, Chin-Yih 2010 2010-04-15 PMC N PMC7110191 20225944.0 10.1086/650391 7ihcxsyf 0.762900 Chen_2018, Monis_2006 Zhong_2007
18 Zhu_H_2020 Recent advances in lab-on-a-chip technologies for viral diagnosis Zhu, Hanliang; Fohlerová, Zdenka; Pekárek, Jan; Basova, Evgenia; Neužil, Pavel 2020 2020-04-01 PMC N PMC7126858 31999560.0 10.1016/j.bios.2020.112041 zwbn44gz 0.731144 Monis_2006 Zhang_2019, Malik_2020, Wang_2011
19 Choi_2018 Recent Trends in Nanomaterials‐Based Colorimetric Detection of Pathogenic Bacteria and Viruses Choi, Yoojin; Hwang, Ji Hyeon; Lee, Sang Yup 2018 2018-03-08 PMC N PMC7169612 10.1002/smtd.201700351 rf1o5ioi 0.725664
20 Zhang_2007 Miniaturized PCR chips for nucleic acid amplification and analysis: latest advances and future trends Zhang, Chunsun; Xing, Da 2007 2007-06-18 NONCOMM N PMC1934988 17576684.0 10.1093/nar/gkm389 j0bazhy2 0.720300 Zanoli_2012, Wang_2011, Mauk_2015, Zhang_2019
21 Rodriguez_1997 Detection of animal pathogens by using the polymerasechain reaction (PCR) Rodriguez, J.M. 1997 1997-05-31 PMC N PMC7129519 9232118.0 10.1016/s1090-0233(97)80063-9 0ksn0fc7 0.716905
22 Parida_2012 Rapid and Real-time Detection of Human Viral Infections: Current Trends and Future Perspectives Parida, Manmohan; Shukla, Jyoti; Sharma, Shashi; Lakshmana Rao, P. V. 2012 2012-01-18 PMC N PMC7099323 10.1007/s40011-011-0015-8 3no082lg 0.713088 Parida_2008, Malik_2013, Peng_2015
23 Khambhati_2018 Current progress in CRISPR‐based diagnostic platforms Khambhati, Khushal; Bhattacharjee, Gargi; Singh, Vijai 2018 2018-10-26 PMC N PMC7166747 30362590.0 10.1002/jcb.27690 ew04zzh6 0.705628
24 Zhao_2020 Colorimetric biosensors for point-of-care virus detections Zhao, Victoria Xin Ting; Wong, Ten It; Zheng, Xin Ting; Tan, Yen Nee; Zhou, Xiaodong 2020 2020-12-31 PMC N PMC7148662 10.1016/j.mset.2019.10.002 fcdm1f8f 0.688622 Kim_H_2019
25 Shin_2018 Nucleic Acid Extraction and Enrichment Shin, Jeong Hwan 2018 2018-11-10 PMC N PMC7123959 10.1007/978-3-319-33900-9_13 du42ho11 0.665522 Dundas_2008, Koopmans_1993
26 Jun_B_2012 Fluorescence-Based Multiplex Protein Detection Using Optically Encoded Microbeads Jun, Bong-Hyun; Kang, Homan; Lee, Yoon-Sik; Jeong, Dae Hong 2012 2012-03-01 COMM-USE N PMC6268487 22382526.0 10.3390/molecules17032474 f14ips7d 0.665191 Wang_2012
27 Dunbar_2006 Applications of Luminex® xMAP™ technology for rapid, high-throughput multiplexed nucleic acid detection Dunbar, Sherry A. 2006 2006-01-31 PMC N PMC7124242 16102740.0 10.1016/j.cccn.2005.06.023 72qihi2k 0.660741 Chen_2018, Monis_2006 Zanoli_2012, Mori_2006, Zhang_2019, Li_J_2012
28 Drake_2011 Activatable Optical Probes for the Detection of Enzymes Drake, Christopher R.; Miller, David C.; Jones, Ella F. 2011 2011-08-01 PMC N PMC3601828 23519774.0 10.2174/157017911796117232 m6pvfbod 0.648101 Kim_H_2019
29 Daher_2016 Recombinase Polymerase Amplification for Diagnostic Applications Daher, Rana K; Stewart, Gale; Boissinot, Maurice; Bergeron, Michel G 2016 2016-07-01 PMC N PMC7108464 27160000.0 10.1373/clinchem.2015.245829 xk4w0iz5 0.645177 Abd_El_Wahed_2015, Wang_2019
30 Oriero_2015 Molecular-based isothermal tests for field diagnosis of malaria and their potential contribution to malaria elimination Oriero, Eniyou C.; Jacobs, Jan; Van Geertruyden, Jean-Pierre; Nwakanma, Davis; D'Alessandro, Umberto 2015 2015-01-01 PMC N PMC7109677 25223973.0 10.1093/jac/dku343 utcysxuc 0.634688 Sidoti_2012, Monis_2006 Lucchi_2010, da_Silva_2019, Njiru_2008
31 Chan_2016 A Rapid and Low-Cost PCR Thermal Cycler for Infectious Disease Diagnostics Chan, Kamfai; Wong, Pui-Yan; Yu, Peter; Hardick, Justin; Wong, Kah-Yat; Wilson, Scott A.; Wu, Tiffany; Hui, Zoe; Gaydos, Charlotte; Wong, Season S. 2016 2016-02-12 COMM-USE N PMC4752298 26872358.0 10.1371/journal.pone.0149150 pt4jsr6d 0.634664 Dinh_2011, Jeong_2015, Wang_2018 Nemoto_2015, Li_J_2012, Zambenedetti_2017
32 Curtis_2012 Isothermal Amplification Using a Chemical Heating Device for Point-of-Care Detection of HIV-1 Curtis, Kelly A.; Rudolph, Donna L.; Nejad, Irene; Singleton, Jered; Beddoe, Andy; Weigl, Bernhard; LaBarre, Paul; Owen, S. Michele 2012 2012-02-23 COMM-USE N PMC3285652 22384022.0 10.1371/journal.pone.0031432 hvaie7ay 0.634538 Sidoti_2012, Dinh_2011, Wang_2018, Jeong_2015 da_Silva_2019
33 Parida_2008 Rapid and real-time detection technologies for emerging viruses of biomedical importance Parida, M. M. 2008 2008-11-01 PMC N PMC7090734 19208986.0 10.1007/s12038-008-0079-7 23kzr8rq 0.633673 Dinh_2011, Parida_2012 Parida_2012, Nemoto_2015
34 Jiang_2017 Amplicon competition enables end-point quantitation of nucleic acids following isothermal amplification Jiang, Yu Sherry; Stacy, Apollo; Whiteley, Marvin; Ellington, Andrew D.; Bhadra, Sanchita 2017 2017-07-17 None N PMC5890436 28628741.0 10.1002/cbic.201700317 g7ng363h 0.633080 Wang_2018, Zanoli_2012, Sidoti_2012 Nemoto_2015, Schoenike_1999, Nagy_2017
35 Silva_2018 Rapid detection of potyviruses from crude plant extracts Silva, Gonçalo; Oyekanmi, Joshua; Nkere, Chukwuemeka K.; Bömer, Moritz; Kumar, P. Lava; Seal, Susan E. 2018 2018-04-01 COMM-USE N PMC5873530 29378167.0 10.1016/j.ab.2018.01.019 z716py0g 0.623445 Chen_2018 Londoño_2016
36 Goo_N_2016 Rolling circle amplification as isothermal gene amplification in molecular diagnostics Goo, Nam-In; Kim, Dong-Eun 2016 2016-07-29 PMC N PMC7096790 10.1007/s13206-016-0402-6 yir5dia8 0.621625 Wu_L_2010, Thiel_1997, Wang_2018 Wu_L_2010, Fallahi_2015, Kersting_2014, Moser_2012
37 Lee_T_2006 DNA-based bioanalytical microsystems for handheld device applications Lee, Thomas Ming-Hung; Hsing, I-Ming 2006 2006-01-18 PMC N PMC7094345 17723328.0 10.1016/j.aca.2005.05.075 b6tr2zyx 0.621123 Monis_2006 Yeung_2006, Wang_2017
38 Azhar_2020 Rapid, field-deployable nucleobase detection and identification using FnCas9 Mohd. Azhar; Rhythm Phutela; Asgar Hussain Ansari; Dipanjali Sinha; Namrata Sharma; Manoj Kumar; Meghali Aich; Saumya Sharma; Khushboo Singhal; Harsha Lad; Pradeep K. Patra; Govind Makharia; Giriraj Ratan Chandak; Debojyoti Chakraborty; Souvik Maiti 2020 2020-04-09 BioRxiv Y 10.1101/2020.04.07.028167 rfhtlodc 0.617391 Pyrc_2011, Wang_2019
39 Schumacher_2012 Miniaturization for Point-of-Care Analysis: Platform Technology for Almost Every Biomedical Assay Schumacher, Soeren; Sartorius, Dorian; Ehrentreich-Förster, Eva; Bier, Frank F. 2012 2012-10-12 NONCOMM N PMC4975254 27683418.0 ozbnfoqv 0.613542 Malik_2020
40 Son_J_2016 Rapid Optical Cavity PCR Son, Jun Ho; Hong, SoonGweon; Haack, Amanda J.; Gustafson, Lars; Song, Minsun; Hoxha, Ori; Lee, Luke P. 2016 2016-01-07 PMC N PMC7159328 26592501.0 10.1002/adhm.201500708 czb8luhk 0.611382 Thiel_2002, Wang_2018, Jeong_2015, Nitsche_2004, Zhang_2011
41 Wylezich_2018 A Versatile Sample Processing Workflow for Metagenomic Pathogen Detection Wylezich, Claudia; Papa, Anna; Beer, Martin; Höper, Dirk 2018 2018-08-30 None N PMC6117295 30166611.0 10.1038/s41598-018-31496-1 alkxz0g3 0.608926
42 Zhong_2007 Viral RNA extraction for in-the-field analysis Zhong, Jiang F.; Weiner, Leslie P.; Burke, Kathy; Taylor, Clive R. 2007 2007-09-30 None N PMC3635480 17548117.0 10.1016/j.jviromet.2007.04.006 zduf4f73 0.605970 Mikel_2015
43 Li_S_2006 Clinical Analysis by Microchip Capillary Electrophoresis Li, Sam FY; Kricka, Larry J 2006 2006-01-01 PMC N PMC7108151 16299048.0 10.1373/clinchem.2005.059600 8pnlsxhp 0.593723 Liu_D_2006, Sidoti_2012
44 Zhu_H_2020 IoT PCR for pandemic disease detection and its spread monitoring Zhu, Hanliang; Podesva, Pavel; Liu, Xiaocheng; Zhang, Haoqing; Teply, Tomas; Xu, Ying; Chang, Honglong; Qian, Airong; Lei, Yingfeng; Li, Yu; Niculescu, Andreea; Iliescu, Ciprian; Neuzil, Pavel 2020 2020-01-15 None N PMC7125887 10.1016/j.snb.2019.127098 ityhcak7 0.584478 da_Silva_2019
45 Lobato_2018 Recombinase polymerase amplification: Basics, applications and recent advances Lobato, Ivan Magriñá; O'Sullivan, Ciara K. 2018 2018-01-31 PMC N PMC7112910 10.1016/j.trac.2017.10.015 55pxm1m6 0.576228 Lee_J_2019, Chen_2018, Jiang_2011, Thiel_1997 Daher_2016, Moser_2012, Lee_J_2019, Rivera_2013
46 Briese_2005 Diagnostic System for Rapid and Sensitive Differential Detection of Pathogens Briese, Thomas; Palacios, Gustavo; Kokoris, Mark; Jabado, Omar; Liu, Zhiqiang; Renwick, Neil; Kapoor, Vishal; Casas, Inmaculada; Pozo, Francisco; Limberger, Ron; Perez-Brena, Pilar; Ju, Jingyue; Lipkin, W. Ian 2005 2005-02-23 PMC N PMC3320438 15752453.0 10.3201/eid1102.040492 jk983q4p 0.574150
47 Pedrero_2011 Magnetic Beads‐Based Electrochemical Sensors Applied to the Detection and Quantification of Bioterrorism/Biohazard Agents Pedrero, María; Campuzano, Susana; Pingarrón, José M. 2011 2011-11-18 PMC N PMC7163718 10.1002/elan.201100528 z2h7mjng 0.568112
48 Tabraue-Chávez_2019 A colorimetric strategy based on dynamic chemistry for direct detection of Trypanosomatid species Tabraue-Chávez, Mavys; Luque-González, María Angélica; Marín-Romero, Antonio; Sánchez-Martín, Rosario María; Escobedo-Araque, Pablo; Pernagallo, Salvatore; Díaz-Mochón, Juan José 2019 2019-03-06 COMM-USE N PMC6403333 30842455.0 10.1038/s41598-019-39946-0 qr6ukfti 0.564872 Njiru_2008, Rivera_2013, Thuy_Tien_2018
49 Paul_1990 Applications of nucleic acid probes in veterinary infectious diseases Paul, Prem S. 1990 1990-09-30 PMC N PMC7117517 2124400.0 10.1016/0378-1135(90)90187-z swx3kqob 0.557876
50 Senanayake_1995 Precise large deletions by the PCR-based overlap extension method Senanayake, Savithra D.; Brian, David A. 1995 1995-01-01 PMC N PMC7090436 8521036.0 10.1007/bf02907467 147erliy 0.557549
51 Lee_D_2009 Detection of genetically modified organisms (GMOs) using isothermal amplification of target DNA sequences Lee, David; La Mura, Maurizio; Allnutt, Theo R; Powell, Wayne 2009 2009-02-02 COMM-USE N PMC2656497 19187544.0 10.1186/1472-6750-9-7 rl7sdzd7 0.556334 Wang_2018, Lee_W_2008, Thiel_2002, Li_H_2019 Fallahi_2015, Mori_2006, Sun_X_2017
52 Morabito_2013 Engineering Insights for Multiplexed Real-Time Nucleic Acid Sequence-Based Amplification (NASBA): Implications for Design of Point-of-Care Diagnostics Morabito, Kenneth; Wiske, Clay; Tripathi, Anubhav 2013 2013-05-16 PMC N PMC7099912 23677856.0 10.1007/s40291-013-0029-4 qvazsptq 0.555322 Lee_W_2008, Kim_K_2007 Zhang_2019, Zambenedetti_2017, Zhang_2014
53 Li_Z_2016 Picoliter Well Array Chip-Based Digital Recombinase Polymerase Amplification for Absolute Quantification of Nucleic Acids Li, Zhao; Liu, Yong; Wei, Qingquan; Liu, Yuanjie; Liu, Wenwen; Zhang, Xuelian; Yu, Yude 2016 2016-04-13 COMM-USE N PMC4830604 27074005.0 10.1371/journal.pone.0153359 0tmd9knh 0.554672 Liu_H_2006, Wang_2018, Zanoli_2012, Benson_2008, Ahberg_2015 Zanoli_2012, Mori_2006, Mauk_2015, Kersting_2014
54 Eboigbodin_2016 Reverse transcription strand invasion based amplification (RT-SIBA): a method for rapid detection of influenza A and B Eboigbodin, Kevin; Filén, Sanna; Ojalehto, Tuomas; Brummer, Mirko; Elf, Sonja; Pousi, Kirsi; Hoser, Mark 2016 2016-04-11 COMM-USE N PMC4875950 27063012.0 10.1007/s00253-016-7491-y svoshzz8 0.542610 Thiel_2002, Wang_2018, Dinh_2011, Thiel_1997 Nemoto_2015
55 Jin_C_2018 Simple and label-free pathogen enrichment via homobifunctional imidoesters using a microfluidic (SLIM) system for ultrasensitive pathogen detection in various clinical specimens Jin, Choong Eun; Koo, Bonhan; Lee, Eun Yeong; Kim, Ji Yeun; Kim, Sung-Han; Shin, Yong 2018 2018-07-15 PMC N PMC7125596 29653418.0 10.1016/j.bios.2018.04.001 fu6dgog8 0.535116 Kim_H_2019, Luo_L_2020
56 Poritz_2011 FilmArray, an Automated Nested Multiplex PCR System for Multi-Pathogen Detection: Development and Application to Respiratory Tract Infection Poritz, Mark A.; Blaschke, Anne J.; Byington, Carrie L.; Meyers, Lindsay; Nilsson, Kody; Jones, David E.; Thatcher, Stephanie A.; Robbins, Thomas; Lingenfelter, Beth; Amiott, Elizabeth; Herbener, Amy; Daly, Judy; Dobrowolski, Steven F.; Teng, David H. -F.; Ririe, Kirk M. 2011 2011-10-19 COMM-USE N PMC3198457 22039434.0 10.1371/journal.pone.0026047 mowwh1jf 0.529649 Benson_2008, Chen_2018, Lee_W_2008, Zanoli_2012 Li_J_2012
57 Li_J_2018 The successes and future prospects of the linear antisense RNA amplification methodology Li, Jifen; Eberwine, James 2018 2018-03-29 PMC N PMC7086549 29599441.0 10.1038/nprot.2018.011 u9svz7pf 0.522987
58 Zhou_2020 Programmable low-cost DNA-based platform for viral RNA detection Lifeng Zhou; Arun Richard Chandrasekaran; Jibin Abraham Punnoose; Gaston Bonenfant; Stephon Charles; Oksana Levchenko; Pheonah Badu; Cassandra Cavaliere; Cara T. Pager; Ken Halvorsen 2020 2020-01-16 BioRxiv N 10.1101/2020.01.12.902452 8kced06y 0.504242 da_Silva_2019, Nemoto_2015, Zhong_2007
59 Rolando_2020 Real-time kinetics and high-resolution melt curves in single-molecule digital LAMP to differentiate and study specific and non-specific amplification Rolando, Justin C; Jue, Erik; Barlow, Jacob T; Ismagilov, Rustem F 2020 2020-04-17 COMM-USE N PMC7144905 32103255.0 10.1093/nar/gkaa099 zt1o1bcz 0.499923 Wang_2018, Lee_W_2008, Li_H_2019 Li_H_2019, Zhang_2014
60 Metsky_2020 CRISPR-based surveillance for COVID-19 using genomically-comprehensive machine learning design Hayden C. Metsky; Catherine A. Freije; Tinna-Solveig F. Kosoko-Thoroddsen; Pardis C. Sabeti; Cameron Myhrvold 2020 2020-03-02 BioRxiv Y 10.1101/2020.02.26.967026 7tkvl894 0.499905
61 da_Silva_2019 Loop-Mediated Isothermal Amplification (LAMP) for the Diagnosis of Zika Virus: A Review da Silva, Severino Jefferson Ribeiro; Pardee, Keith; Pena, Lindomar 2019 2019-12-23 COMM-USE N PMC7019470 31877989.0 10.3390/v12010019 yxuyhc7p 0.488167 Dinh_2011, Mori_2009 Stranieri_2017, Kurosaki_2017, Nemoto_2015
62 Wong_2018 Loop‐mediated isothermal amplification (LAMP): a versatile technique for detection of micro‐organisms Wong, Y.‐P.; Othman, S.; Lau, Y.‐L.; Radu, S.; Chee, H.‐Y. 2018 2018-02-12 PMC N PMC7167136 29165905.0 10.1111/jam.13647 tddvy5si 0.487160 Wang_2018, Monis_2006, Dinh_2011, Lee_W_2008
63 Nunez-Bajo_2020 Ultra-Low-Cost Integrated Silicon-based Transducer for On-Site, Genetic Detection of Pathogens Estefania Nunez-Bajo; Michael Kasimatis; Yasin Cotur; Tarek Asfour; Alex Collins; Ugur Tanriverdi; Max Grell; Matti Kaisti; Guglielmo Senesi; Karen Stevenson; Firat Guder 2020 2020-03-25 BioRxiv Y 10.1101/2020.03.23.002931 7a3wdduq 0.483606 Liu_H_2006, Wu_L_2010, Jiang_2011, Nitsche_2004 Malik_2020, Zhou_2020, Chan_2016, Zhang_2019
64 Koo_B_2018 Arch-shaped multiple-target sensing for rapid diagnosis and identification of emerging infectious pathogens Koo, Bonhan; Hong, Ki Ho; Jin, Choong Eun; Kim, Ji Yeun; Kim, Sung-Han; Shin, Yong 2018 2018-11-15 PMC N PMC7126750 30103157.0 10.1016/j.bios.2018.08.007 nkzz65ub 0.482149 Kim_J_2019
65 Giles_2015 Development of a DNA-based microarray for the detection of zoonotic pathogens in rodent species Giles, Timothy; Yon, Lisa; Hannant, Duncan; Barrow, Paul; Abu-Median, Abu-Bakr 2015 2015-12-31 PMC N PMC7127396 26188129.0 10.1016/j.mcp.2015.07.005 xo1cyzrg 0.476672 Li_J_2012
66 Hass_2020 Integrated Micropillar Polydimethylsiloxane Accurate CRISPR Detection (IMPACT) System for Rapid Viral DNA Sensing Kenneth N. Hass; Mengdi Bao; Qian He; Myeongkee Park; Peiwu Qin; Ke Du 2020 2020-03-20 BioRxiv N 10.1101/2020.03.17.994137 d840uu3e 0.475040 Liu_H_2006, Wu_L_2010, Jiang_2011, Kutyavin_2006, Lin_C_2007 Bao_M_2020, Chen_2015, Yeung_2006
67 Wang_2013 Application of Molecular Beacons in Real-Time PCR Wang, Chunming; Yang, Chaoyong James 2013 2013-07-18 PMC N PMC7123797 10.1007/978-3-642-39109-5_3 95z3ecsm 0.464417 Thiel_2002, Wang_2018, Liu_H_2006, Ahberg_2015 Ahberg_2015, Schoenike_1999, Leutenegger_1999
68 Saharan_2013 Rapid Detection of Viruses Using Loop-Mediated Isothermal Amplification (LAMP): A Review Saharan, P.; Khatri, P.; Dingolia, S.; Duhan, J. S.; Gahlawat, S. K. 2013 2013-10-04 PMC N PMC7122297 10.1007/978-81-322-1683-4_21 3211g3ij 0.461678 Dinh_2011, Lee_W_2008, Benson_2008, Wang_2018 Reddy_2011, Peng_2015, Malik_2013, Shirato_2007
69 Han_S_2013 Molecular Beacons: A Novel Optical Diagnostic Tool Han, Su-Xia; Jia, Xi; Ma, Jin-lu; Zhu, Qing 2013 2013-01-05 PMC N PMC7079750 23292078.0 10.1007/s00005-012-0209-7 c0iv4pp3 0.460700 Jiang_2011 Mori_2006, Kim_H_2019, Tabraue-Chávez_2019
70 Bhadra_2018 Simultaneous Detection of Different Zika Virus Lineages via Molecular Computation in a Point-of-Care Assay Bhadra, Sanchita; Saldaña, Miguel A.; Han, Hannah Grace; Hughes, Grant L.; Ellington, Andrew D. 2018 2018-12-14 COMM-USE N PMC6316447 30558136.0 10.3390/v10120714 srxo19hg 0.459585 Lee_W_2008 da_Silva_2019, Bhadra_2018, Kurosaki_2017
71 Marzinotto_2020 A streamlined approach to rapidly detect SARS-CoV-2 infection, avoiding RNA extraction Stefania Marzinotto; Catia Mio; Adriana Cifu'; Roberto Verardo; Corrado Pipan; Claudio Schneider; Francesco Curcio 2020 2020-04-11 BioRxiv Y 10.1101/2020.04.06.20054114 mi6w8ppe 0.458535 Chen_2018 Kalikiri_2020
72 Bearinger_2011 Development and Initial Results of a Low Cost, Disposable, Point-of-Care Testing Device for Pathogen Detection Bearinger, Jane P.; Dugan, Lawrence C.; Baker, Brian R.; Hall, Sara B.; Ebert, Katja; Mioulet, Valerie; Madi, Mikidache; King, Donald P. 2011 2011-03-01 PMC N PMC3071014 21342806.0 10.1109/tbme.2010.2089054 sqlm7qax 0.458128 Liu_H_2006, Wang_2018, Benson_2008, Jeong_2015, Zanoli_2012 Curtis_2012, da_Silva_2019
73 Ziros_2011 Development of an optimized method for the detection of airborne viruses with real-time PCR analysis Ziros, Panos G; Kokkinos, Petros A; Legaki, Euaggelia; Vantarakis, Apostolos 2011 2011-07-27 COMM-USE N PMC3199808 21794150.0 10.1186/1743-422x-8-369 ntv2veww 0.456815 Dinh_2011 Li_J_2012, Wu_M_2018, Rheem_2012
74 Gibriel_2017 Advances in ligase chain reaction and ligation-based amplifications for genotyping assays: Detection and applications Gibriel, Abdullah A.; Adel, Ola 2017 2017-07-31 PMC N PMC7108312 28927538.0 10.1016/j.mrrev.2017.05.001 mdkmm9xe 0.454169 Wang_2018, Liu_H_2006, Monis_2006, Chen_2018 Fallahi_2015, Mori_2006, Zhang_2019, Zanoli_2012
75 Wee_S_2020 Rapid direct nucleic acid amplification test without RNA extraction for SARS-CoV-2 using a portable PCR thermocycler Soon Keong Wee; Suppiah Paramalingam Sivalingam; Eric Peng Huat Yap 2020 2020-04-20 BioRxiv Y 10.1101/2020.04.17.042366 e1oinu71 0.442817 Wang_2018, Lau_L_2003, Jiang_2004, Dinh_2011, Nitsche_2004
76 Bhadra_2018 Multiplex logic processing isothermal diagnostic assays for an evolving virus Sanchita Bhadra; Miguel A. Saldaña; Hannah Grace Han; Grant L. Hughes; Andrew D. Ellington 2018 2018-09-23 BioRxiv N 10.1101/424440 n5liudlg 0.439874 Lee_W_2008, Dinh_2011 Bhadra_2018, da_Silva_2019, Li_J_2012, Nemoto_2015
77 Goodman_2016 High-throughput Detection of Respiratory Pathogens in Animal Specimens by Nanoscale PCR Goodman, Laura B.; Anderson, Renee R.; Slater, Marcia; Ortenberg, Elen; Renshaw, Randall W.; Chilson, Brittany D.; Laverack, Melissa A.; Beeby, John S.; Dubovi, Edward J.; Glaser, Amy L. 2016 2016-11-28 NONCOMM N PMC5226323 27929456.0 10.3791/54781 rd1bxkbu 0.435028 Chen_2018, Benson_2008, Kim_K_2007 Nemoto_2015, Hakhverdyan_2005
78 Mauk_2015 Integrated Microfluidic Nucleic Acid Isolation, Isothermal Amplification, and Amplicon Quantification Mauk, Michael G.; Liu, Changchun; Song, Jinzhao; Bau, Haim H. 2015 2015-10-20 COMM-USE N PMC4996405 27600235.0 10.3390/microarrays4040474 ggtxuulg 0.434693 Wang_2018, Liu_H_2006, Chen_2018, Horejsh_2005 Zanoli_2012, Zhang_2019, Wang_2011, Thaitrong_2010
79 Park_2015 Fluorescence polarization-based nucleic acid testing for rapid and cost-effective diagnosis of infectious disease Park, Ki Soo; Charles, Richelle C.; Ryan, Edward T.; Weissleder, Ralph; Lee, Hakho 2015 2015-09-30 PMC N PMC4816641 26420633.0 10.1002/chem.201502934 iqcf7axm 0.420732 Jiang_2011, Liu_H_2006, Wu_L_2010, Benson_2008, Wang_2018 Riahi_2011, Tabraue-Chávez_2019, Pyrc_2011
80 Du_Y_2015 A Sweet Spot for Molecular Diagnostics: Coupling Isothermal Amplification and Strand Exchange Circuits to Glucometers Du, Yan; Hughes, Randall A.; Bhadra, Sanchita; Jiang, Yu Sherry; Ellington, Andrew D.; Li, Bingling 2015 2015-06-08 None N PMC4458886 26050646.0 10.1038/srep11039 pbpvlvlk 0.420368 Wang_2018 Mori_2006, Nemoto_2015, Dong_2019, Zanoli_2012
81 Yoshimura_2015 Controlled Microwave Heating Accelerates Rolling Circle Amplification Yoshimura, Takeo; Suzuki, Takamasa; Mineki, Shigeru; Ohuchi, Shokichi 2015 2015-09-08 COMM-USE N PMC4562646 26348227.0 10.1371/journal.pone.0136532 yvd1n42f 0.417070 Jiang_2011, Liu_H_2006, Thiel_2002 Goo_N_2016, Moser_2012, Mori_2006
82 Zhao_2020 A simple magnetic nanoparticles-based viral RNA extraction method for efficient detection of SARS-CoV-2 Zhen Zhao; Haodong Cui; Wenxing Song; Xiaoling Ru; Wenhua Zhou; Xuefeng Yu 2020 2020-02-27 BioRxiv Y 10.1101/2020.02.22.961268 nbu6bsb3 0.415771 Stranieri_2017, Zhu_X_2020, Nemoto_2015, Poon_2003
83 Zhang_2020 Rapid Molecular Detection of SARS-CoV-2 (COVID-19) Virus RNA Using Colorimetric LAMP Yinhua Zhang; Nelson Odiwuor; Jin Xiong; Luo Sun; Raphael Ohuru Nyaruaba; Hongping Wei; Nathan A Tanner 2020 2020-02-29 BioRxiv Y 10.1101/2020.02.26.20028373 cv3qgno3 0.415316 Dinh_2011, Benson_2008 Nemoto_2015, Kim_J_2019
84 Fekrat_2015 Application of the LAMP Assay as a Diagnostic Technique for Rapid Identification of Thrips tabaci (Thysanoptera: Thripidae) Fekrat, Lida; Zaki Aghl, Mohammad; Tahan, Vahid 2015 2015-05-03 PMC N PMC7109851 26470262.0 10.1093/jee/tov099 e1e1cgkk 0.412114 Lung_2013, Najafzadeh_2018
85 Bhadra_2020 A one-enzyme RT-qPCR assay for SARS-CoV-2, and procedures for reagent production Sanchita Bhadra; Andre C Maranhao; Andrew D Ellington 2020 2020-03-31 BioRxiv Y 10.1101/2020.03.29.013342 ouyr4oke 0.402686 Benson_2008, Thiel_2002, Dinh_2011, Wang_2018 Nemoto_2015, Li_H_2019
86 Liu_L_2008 Design and integration of an all-in-one biomicrofluidic chip Liu, Liyu; Cao, Wenbin; Wu, Jingbo; Wen, Weijia; Chang, Donald Choy; Sheng, Ping 2008 2008-09-01 PMC N PMC2716927 19693370.0 10.1063/1.2966453 j26cojxi 0.395413 Yeung_2006, Liu_H_2006 Yeung_2006
87 Fox_J_2007 Nucleic acid amplification tests for detection of respiratory viruses Fox, Julie D. 2007 2007-10-31 PMC N PMC7128542 18162249.0 10.1016/s1386-6532(07)70005-7 1fbj1rdv 0.393871 Dinh_2011 Zambenedetti_2017
88 Sampath_2005 Rapid Identification of Emerging Pathogens: Coronavirus Sampath, Rangarajan; Hofstadler, Steven A.; Blyn, Lawrence B.; Eshoo, Mark W.; Hall, Thomas A.; Massire, Christian; Levene, Harold M.; Hannis, James C.; Harrell, Patina M.; Neuman, Benjamin; Buchmeier, Michael J.; Jiang, Yun; Ranken, Raymond; Drader, Jared J.; Samant, Vivek; Griffey, Richard H.; McNeil, John A.; Crooke, Stanley T.; Ecker, David J. 2005 2005-03-23 PMC N PMC3298233 15757550.0 10.3201/eid1103.040629 ll6lkhyd 0.392676 Dinh_2011, Falcone_1997 Keyaerts_2006
89 Shirato_2019 Detecting amplicons of loop‐mediated isothermal amplification Shirato, Kazuya 2019 2019-08-13 PMC N PMC7168367 31342547.0 10.1111/1348-0421.12734 gprd79di 0.391552 Wang_2018, Lau_L_2003, Liu_H_2006, Benson_2008
90 Leijon_2006 LightUp® probes in clinical diagnostics Leijon, Mikael; Mousavi-Jazi, Mehrdad; Kubista, Mikael 2006 2006-06-30 PMC N PMC7112358 16466783.0 10.1016/j.mam.2005.12.005 39jdxj93 0.390291 Mori_2006, Zhang_2019, Kim_H_2019
91 Mori_2006 Sequence specific visual detection of LAMP reactions by addition of cationic polymers Mori, Yasuyoshi; Hirano, Tsuyoshi; Notomi, Tsugunori 2006 2006-01-10 COMM-USE N PMC1373654 16401354.0 10.1186/1472-6750-6-3 m71xkuo9 0.387271 Liu_H_2006, Jiang_2011, Wang_2018, Wu_L_2010, Yang_2008 Rivera_2013, Fallahi_2015, Lee_S_2008
92 Li_C_2007 Construction of a multiplex allele‐specific PCR‐based universal array (ASPUA) and its application to hearing loss screening Li, Cai‐Xia; Pan, Qian; Guo, Yong‐Gang; Li, Yan; Gao, Hua‐Fang; Zhang, Di; Hu, Hao; Xing, Wan‐Li; Mitchelson, Keith; Xia, Kun; Dai, Pu; Cheng, Jing 2007 2007-12-27 PMC N PMC7165727 18161878.0 10.1002/humu.20622 3v7se14x 0.387042
93 Chen_2011 Detection and Identification of Common Food-Borne Viruses with a Tiling Microarray Chen, Haifeng; Mammel, Mark; Kulka, Mike; Patel, Isha; Jackson, Scott; Goswami, Biswendu B. 2011 2011-05-16 NONCOMM N PMC3109525 21660190.0 10.2174/1874357901105010052 ycs5rtoc 0.386698 Giles_2015, Engel_2010
94 Hadjinicolaou_2011 Development of a molecular-beacon-based multi-allelic real-time RT-PCR assay for the detection of human coronavirus causing severe acute respiratory syndrome (SARS-CoV): a general methodology for detecting rapidly mutating viruses Hadjinicolaou, Andreas V.; Farcas, Gabriella A.; Demetriou, Victoria L.; Mazzulli, Tony; Poutanen, Susan M.; Willey, Barbara M.; Low, Donald E.; Butany, Jagdish; Asa, Sylvia L.; Kain, Kevin C.; Kostrikis, Leondios G. 2011 2011-01-11 PMC N PMC7087183 21221674.0 10.1007/s00705-010-0906-7 kqexnda2 0.385167 Dinh_2011 Keyaerts_2006, Kim_J_2019
95 Sharma_2014 Recombinase‐Based Isothermal Amplification of Nucleic Acids with Self‐Avoiding Molecular Recognition Systems (SAMRS) Sharma, Nidhi; Hoshika, Shuichi; Hutter, Daniel; Bradley, Kevin M.; Benner, Steven A. 2014 2014-09-10 PMC N PMC7162014 25209570.0 10.1002/cbic.201402250 jm2xpn1w 0.384393 Thiel_1997, Lee_J_2019, Lee_W_2008
96 Guo_L_2020 SARS-CoV-2 detection with CRISPR diagnostics Lu Guo; Xuehan Sun; Xinge Wang; Chen Liang; Haiping Jiang; Qingqin Gao; Moyu Dai; Bin Qu; Sen Fang; Yihuan Mao; Yangcan Chen; Guihai Feng; Qi Gu; Liu Wang; Ruiqi Rachel Wang; Qi Zhou; Wei Li 2020 2020-04-11 BioRxiv Y 10.1101/2020.04.10.023358 2una9767 0.379231 Dinh_2011 Metsky_2020
97 Sabalza_2018 Detection of Zika virus using reverse-transcription LAMP coupled with reverse dot blot analysis in saliva Sabalza, Maite; Yasmin, Rubina; Barber, Cheryl A.; Castro, Talita; Malamud, Daniel; Kim, Beum Jun; Zhu, Hui; Montagna, Richard A.; Abrams, William R. 2018 2018-02-05 COMM-USE N PMC5798782 29401479.0 10.1371/journal.pone.0192398 9qc3blqk 0.378597 Dinh_2011 Nemoto_2015, Kurosaki_2017, Malik_2013
98 Boyle_2014 Rapid Detection of Mycobacterium tuberculosis by Recombinase Polymerase Amplification Boyle, David S.; McNerney, Ruth; Teng Low, Hwee; Leader, Brandon Troy; Pérez-Osorio, Ailyn C.; Meyer, Jessica C.; O'Sullivan, Denise M.; Brooks, David G.; Piepenburg, Olaf; Forrest, Matthew S. 2014 2014-08-13 COMM-USE N PMC4138011 25118698.0 10.1371/journal.pone.0103091 jg4txydn 0.377464 Tan_J_2011, Wang_2018
99 Wang_2019 Development of a recombinase polymerase amplification assay with lateral flow dipstick for rapid detection of feline parvovirus Wang, Zhao-Hua; Wang, Xiao-Jia; Hou, Shao-Hua 2019 2019-09-30 PMC N PMC7113848 31216435.0 10.1016/j.jviromet.2019.113679 bkq598ur 0.375492 Dinh_2011, Benson_2008 Stranieri_2017, Liu_M_2018, Wang_2017, Zhuang_2019
100 Bai_J_2019 Cas12a-Based On-Site and Rapid Nucleic Acid Detection of African Swine Fever Bai, Jing; Lin, Haosi; Li, Haojian; Zhou, Yang; Liu, Junshan; Zhong, Guorui; Wu, Luting; Jiang, Weifan; Du, Hongli; Yang, Jinyi; Xie, Qingmei; Huang, Lizhen 2019 2019-12-10 COMM-USE N PMC6916198 31921018.0 10.3389/fmicb.2019.02830 5c1rhmmm 0.373977 Dinh_2011 Lu_S_2020
101 Tao_S_2004 One-Tube Nested RT-PCR Enabled by Using a Plastic Film and its Application for the Rapid Detection of SARS-Virus Tao, Sheng-Ce; Jiang, Di; Lu, Hong-Li; Xing, Wan-Li; Zhou, Yu-Xiang; Cheng, Jing 2004 2004-01-01 PMC N PMC7087936 15049359.0 10.1023/b:bile.0000013708.65032.f1 kjdgm2da 0.372624 Thiel_2002, Wang_2018, Lee_W_2008, Thiel_1997 Nemoto_2015, Li_H_2019
102 Londoño_2016 Evaluation of recombinase polymerase amplification for detection of begomoviruses by plant diagnostic clinics Londoño, Maria A.; Harmon, Carrie L.; Polston, Jane E. 2016 2016-03-22 COMM-USE N PMC4802622 27000806.0 10.1186/s12985-016-0504-8 8k3e2j98 0.371858 Benson_2008
103 Singh_2012 Multipurpose Instantaneous Microarray Detection of Acute Encephalitis Causing Viruses and Their Expression Profiles Singh, Desh Deepak; Jain, Amita 2012 2012-06-07 PMC N PMC7080014 22674173.0 10.1007/s00284-012-0154-z u2mfjhtj 0.368861
104 Li_Y_2005 Multiplexed detection of pathogen DNA with DNA-based fluorescence nanobarcodes Li, Yougen; Cu, Yen Thi Hong; Luo, Dan 2005 2005-06-12 PMC N PMC7097058 15951805.0 10.1038/nbt1106 cyaumzsf 0.362577 Kim_H_2019, Tabraue-Chávez_2019, Riahi_2011, Mori_2006
105 Broeders_2020 A new multiplex RT-qPCR method for the simultaneous detection and discrimination of Zika and chikungunya viruses Broeders, Sylvia; Garlant, Linda; Fraiture, Marie-Alice; Vandermassen, Els; Suin, Vanessa; Vanhomwegen, Jessica; Dupont-Rouzeyrol, Myrielle; Rousset, Dominique; Van Gucht, Steven; Roosens, Nancy 2020 2020-03-31 PMC N PMC7129992 31884173.0 10.1016/j.ijid.2019.12.028 2v6nxruk 0.359938 Dinh_2011 Zhang_2014, Kurosaki_2017, da_Silva_2019, Njiru_2008
106 Ninove_2011 RNA and DNA Bacteriophages as Molecular Diagnosis Controls in Clinical Virology: A Comprehensive Study of More than 45,000 Routine PCR Tests Ninove, Laetitia; Nougairede, Antoine; Gazin, Celine; Thirion, Laurence; Delogu, Ilenia; Zandotti, Christine; Charrel, Remi N.; De Lamballerie, Xavier 2011 2011-02-09 COMM-USE N PMC3036576 21347398.0 10.1371/journal.pone.0016142 8ctsa9sd 0.359346 Chen_2018, Benson_2008, Wang_2018, Thiel_2002 Zambenedetti_2017, Mikel_2015
107 Wang_2018 A fast and simple one-step duplex PCR assay for canine distemper virus (CDV) and canine coronavirus (CCoV) detection Wang, Jing; Luo, Yakun; Liang, Lin; Li, Jinxiang; Cui, Shangjin 2018 2018-08-23 PMC N PMC7087121 30141131.0 10.1007/s00705-018-3982-8 q068aybo 0.357181 Lau_L_2003, Jiang_2004, Borja_1992, Zhang_2011 Wang_2017, Nemoto_2015
108 Eboigbodin_2017 Rapid and sensitive real-time assay for the detection of respiratory syncytial virus using RT-SIBA® Eboigbodin, Kevin E.; Moilanen, Kirsi; Elf, Sonja; Hoser, Mark 2017 2017-02-10 COMM-USE N PMC5301360 28183291.0 10.1186/s12879-017-2227-x aj9wppts 0.354689 Dinh_2011, Chen_2008, Kang_2010, Chen_2010 Shirato_2007, Gueudin_2003, Mu_Y_2014
109 Abd_El_Wahed_2015 Diagnostics-in-a-Suitcase: Development of a portable and rapid assay for the detection of the emerging avian influenza A (H7N9) virus Abd El Wahed, Ahmed; Weidmann, Manfred; Hufert, Frank T. 2015 2015-08-31 PMC N PMC7106543 26209370.0 10.1016/j.jcv.2015.05.004 jlrievxl 0.350554 Dinh_2011, Benson_2008, Nitsche_2004 Li_J_2012, Liu_M_2018
110 Glushakova_2015 Detecting respiratory viral RNA using expanded genetic alphabets and self-avoiding DNA Glushakova, Lyudmyla G.; Sharma, Nidhi; Hoshika, Shuichi; Bradley, Andrea C.; Bradley, Kevin M.; Yang, Zunyi; Benner, Steven A. 2015 2015-11-15 None N PMC4733849 26299645.0 10.1016/j.ab.2015.08.015 4s9zegcb 0.345637 Dinh_2011, Nitsche_2004, Chen_2018 Schoenike_1999, Zambenedetti_2017
111 Zhang_2010 Oligonucleotide microarray with a minimal number of probes for the detection and identification of thirteen genera of plant viruses Zhang, Yongjiang; Yin, Jun; Li, Guifen; Li, Mingfu; Huang, Xin; Chen, Hongjun; Zhao, Wenjun; Zhu, Shuifang 2010 2010-07-31 PMC N PMC7112823 20304013.0 10.1016/j.jviromet.2010.03.010 j8fqan9x 0.345340 Giles_2015, Engel_2010
112 Gao_F_2018 Real-time isothermal detection of Abalone herpes-like virus and red-spotted grouper nervous necrosis virus using recombinase polymerase amplification Gao, Fang; Jiang, Jing-Zhe; Wang, Jiang-Yong; Wei, Hong-Ying 2018 2018-01-31 PMC N PMC7113691 28962967.0 10.1016/j.jviromet.2017.09.024 gf7ieivc 0.344906 Dinh_2011, Benson_2008, Wang_2018, Li_H_2019, Lau_L_2003 Zhang_2014, Wang_2017, Nemoto_2015
113 Wang_2013 Real-Time Fluorescence Loop Mediated Isothermal Amplification for the Detection of Acinetobacter baumannii Wang, Qinqin; Zhou, Yanbin; Li, Shaoli; Zhuo, Chao; Xu, Siqi; Huang, Lixia; Yang, Ling; Liao, Kang 2013 2013-07-02 COMM-USE N PMC3699609 23843955.0 10.1371/journal.pone.0066406 n3lqbcp5 0.343846 Benson_2008, Wang_2018, Dinh_2011, Lee_W_2008 Rivera_2013, Lucchi_2010, Nemoto_2015
114 Moser_2012 Thermostable DNA Polymerase from a Viral Metagenome Is a Potent RT-PCR Enzyme Moser, Michael J.; DiFrancesco, Robert A.; Gowda, Krishne; Klingele, Audrey J.; Sugar, Darby R.; Stocki, Stacy; Mead, David A.; Schoenfeld, Thomas W. 2012 2012-06-04 COMM-USE N PMC3366922 22675552.0 10.1371/journal.pone.0038371 c31xsyeo 0.340217 Gibson_2011, Thiel_2002 Schoenike_1999
115 Zhu_Z_2016 Strand-Exchange Nucleic Acid Circuitry with Enhanced Thermo-and Structure- Buffering Abilities Turns Gene Diagnostics Ultra-Reliable and Environmental Compatible Zhu, Zhentong; Tang, Yidan; Jiang, Yu Sherry; Bhadra, Sanchita; Du, Yan; Ellington, Andrew D.; Li, Bingling 2016 2016-11-04 COMM-USE N PMC5095676 27812041.0 10.1038/srep36605 aokvzym6 0.339859 Lee_W_2008, Jiang_2011 Du_Y_2015, Dong_2019
116 Elf_S_2018 Development and evaluation of a rapid nucleic acid amplification method to detect influenza A and B viruses in human respiratory specimens Elf, Sonja; Auvinen, Pauliina; Jahn, Lisa; Liikonen, Karoliina; Sjöblom, Solveig; Saavalainen, Päivi; Mäki, Minna; Eboigbodin, Kevin E. 2018 2018-09-30 PMC N PMC7127616 29778563.0 10.1016/j.diagmicrobio.2018.04.006 6k73rf0g 0.330815 Dinh_2011, Benson_2008, Vemulapalli_2009, Wang_2018, Li_H_2019 Eboigbodin_2017
117 Wang_2012 Yeast surface display-based microfluidic immunoassay Wang, Jing; Cheng, Danhui; Chan, Jay Kwok-Lun; Luo, Xiaoteng; Wu, Hongkai; Hsing, I-Ming 2012 2012-05-20 PMC N PMC7127699 10.1016/j.snb.2012.02.048 5lz5cajv 0.327951 Liu_H_2006 Yeung_2006
118 Chen_2019 Thermally stable and uniform DNA amplification with picosecond laser ablated graphene rapid thermal cycling device Chen, Zhao-Chi; Chang, Tien-Li; Li, Ching-Hao; Su, Kai-Wen; Liu, Cheng-Che 2019 2019-12-15 PMC N PMC7126615 31629228.0 10.1016/j.bios.2019.111581 gr1eaj6k 0.326750 Liu_H_2006, Yeung_2006, Jiang_2011, Wu_L_2010 Yeung_2006, Wang_2017, Zanoli_2012, Mori_2006
119 Moore_2017 Development of a Recombinase Polymerase Amplification Assay for Detection of Epidemic Human Noroviruses Moore, Matthew D.; Jaykus, Lee-Ann 2017 2017-01-09 COMM-USE N PMC5220337 28067278.0 10.1038/srep40244 03a6hq3t 0.326452 Dinh_2011, Benson_2008, Vemulapalli_2009, Wang_2018, Chen_2010 Malik_2013, Nemoto_2015, Ma_L_2018
120 Lin_C_2007 Self-Assembled Combinatorial Encoding Nanoarrays for Multiplexed Biosensing Lin, Chenxiang; Liu, Yan; Yan, Hao 2007 2007-02-01 PMC N PMC1963466 17298017.0 10.1021/nl062998n 7taai8r7 0.326148 Liu_H_2006, Jiang_2011, Wu_L_2010 Chen_2015, Wang_2017, Yeung_2006
121 Koo_B_2018 CRISPR/dCas9-mediated biosensor for detection of tick-borne diseases Koo, Bonhan; Kim, Da-eun; Kweon, Jiyeon; Jin, Choong Eun; Kim, Sung-Han; Kim, Yongsub; Shin, Yong 2018 2018-11-10 PMC N PMC7126152 10.1016/j.snb.2018.06.069 kgzbd6w3 0.323088 Dinh_2011, Wong_2007, Erlandsson_2011 Zhao_2011
122 Palacios_2007 Panmicrobial Oligonucleotide Array for Diagnosis of Infectious Diseases Palacios, Gustavo; Quan, Phenix-Lan; Jabado, Omar J.; Conlan, Sean; Hirschberg, David L.; Liu, Yang; Zhai, Junhui; Renwick, Neil; Hui, Jeffrey; Hegyi, Hedi; Grolla, Allen; Strong, James E.; Towner, Jonathan S.; Geisbert, Thomas W.; Jahrling, Peter B.; Büchen-Osmond, Cornelia; Ellerbrok, Heinz; Sanchez-Seco, Maria Paz; Lussier, Yves; Formenty, Pierre; Nichol, Stuart T.; Feldmann, Heinz; Briese, Thomas; Lipkin, W. Ian 2007 2007-01-23 PMC N PMC2725825 17370518.0 10.3201/eid1301.060837 0nl4cpn9 0.322150 Dinh_2011
123 Yaren_2016 Standard and AEGIS nicking molecular beacons detect amplicons from the Middle East respiratory syndrome coronavirus Yaren, Ozlem; Glushakova, Lyudmyla G.; Bradley, Kevin M.; Hoshika, Shuichi; Benner, Steven A. 2016 2016-10-31 PMC N PMC5010982 27421627.0 10.1016/j.jviromet.2016.07.008 3b8sz7t5 0.318576 Jiang_2011 Stranieri_2017, Nemoto_2015
124 Yeung_2006 A DNA biochip for on-the-spot multiplexed pathogen identification Yeung, Siu-Wai; Lee, Thomas Ming-Hung; Cai, Hong; Hsing, I-Ming 2006 2006-09-25 NONCOMM N PMC1636451 17000638.0 10.1093/nar/gkl702 0sg0hv9w 0.318226 Liu_H_2006, Liu_L_2008, Lin_C_2007 Wang_2017, Wang_2012, Nakamura_2011, Chen_2015
125 Lee_J_2019 Applying a Linear Amplification Strategy to Recombinase Polymerase Amplification for Uniform DNA Library Amplification Lee, Jeewon; Heo, Sunghoon; Bang, Duhee 2019 2019-11-12 PMC N PMC6882106 31788628.0 10.1021/acsomega.9b02886 rlgzgyzn 0.314691 Gibson_2011, Wu_L_2010, Thiel_2002, Chen_2018 Berthet_2008, Moser_2012, Kersting_2014, Wu_L_2010
126 Xia_J_2011 Simple and rapid detection of human enterovirus 71 by reverse-transcription and loop-mediated isothermal amplification: cryopreservation affected the detection ability Xia, Ju-Feng; Yan, Xiu-Feng; Yu, Hui; Qu, Di; Long, Jian-Er 2011 2011-11-30 PMC N PMC7127202 21899976.0 10.1016/j.diagmicrobio.2011.07.014 zdwolwws 0.314396 Dinh_2011, Chen_2010, Fan_Q_2012, Kang_2010 Nemoto_2015, Malik_2013, Shirato_2007, Stranieri_2017
127 Tsai_2019 A fully automated sample-to-answer PCR system for easy and sensitive detection of dengue virus in human serum and mosquitos Tsai, Jih-Jin; Liu, Wei-Liang; Lin, Ping-Chang; Huang, Bo-Yi; Tsai, Ching-Yi; Lee, Pei-Yu Alison; Tsai, Yun-Long; Chou, Pin-Hsing; Chung, Simon; Liu, Li-Teh; Chen, Chun-Hong 2019 2019-07-10 COMM-USE N PMC6619671 31291289.0 10.1371/journal.pone.0218139 518giv0m 0.313330 Wang_2018, Dinh_2011, Nitsche_2004, Chen_2018 Nemoto_2015
128 Jiang_2020 Development and validation of a rapid single-step reverse transcriptase loop-mediated isothermal amplification (RT-LAMP) system potentially to be used for reliable and high-throughput screening of COVID-19 Minghua Jiang; Wenjie Fang; Amir Aratehfar; Xiaojing Li; Liyan ling; Hua Fang; Farnaz Farnaz Daneshnia; Jian Yu; Wanqing Liao; Hao Pei; Weihua Pan; Cornelia Lass-Florl 2020 2020-03-20 BioRxiv Y 10.1101/2020.03.15.20036376 eo2pcgix 0.312264 Dinh_2011, Benson_2008, Li_H_2019, Chen_2010, Erlandsson_2011 Nemoto_2015, Zhang_2014, Li_H_2019
129 Schoenike_1999 Quantitative sense-specific determination of murine coronavirus RNA by reverse transcription polymerase chain reaction Schoenike, Barry; Franta, Amy K.; Fleming, John O. 1999 1999-03-31 PMC N PMC7119510 10204695.0 10.1016/s0166-0934(98)00167-0 nycdhdsd 0.312222 Thiel_1997, Thiel_2002 Haist_2015, Nemoto_2015
130 Chen_2015 DNA transducer-triggered signal switch for visual colorimetric bioanalysis Chen, Wenhong; Yan, Yurong; Zhang, Ye; Zhang, Xuemei; Yin, Yibing; Ding, Shijia 2015 2015-06-10 COMM-USE N PMC4462091 26060886.0 10.1038/srep11190 w70or31z 0.311367 Jiang_2011, Liu_H_2006, Wu_L_2010, Kutyavin_2006 Wang_2017
131 Lu_S_2020 Rapid detection of African swine fever virus using Cas12a-based portable paper diagnostics Lu, Shuhan; Li, Fang; Chen, Qiubing; Wu, Jing; Duan, Junyi; Lei, Xinlin; Zhang, Ying; Zhao, Dongming; Bu, Zhigao; Yin, Hao 2020 2020-04-07 COMM-USE N PMC7136273 10.1038/s41421-020-0151-5 e7jbm953 0.307894 Dinh_2011 Bai_J_2019, Wu_M_2018
132 Yu_X_2017 A Nanostructured Microfluidic Immunoassay Platform for Highly Sensitive Infectious Pathogen Detection Yu, Xu; Xia, Yiqiu; Tang, Yi; Zhang, Wen‐Long; Yeh, Yin‐Ting; Lu, Huaguang; Zheng, Si‐Yang 2017 2017-06-21 None N PMC7169616 28636164.0 10.1002/smll.201700425 06544dq1 0.307281 Dinh_2011
133 Dauner_2015 Development of a pan-serotype reverse transcription loop-mediated isothermal amplification assay for the detection of dengue virus Dauner, Allison L.; Mitra, Indrani; Gilliland, Theron; Seales, Sajeewane; Pal, Subhamoy; Yang, Shih-Chun; Guevara, Carolina; Chen, Jiann-Hwa; Liu, Yung-Chuan; Kochel, Tadeusz J.; Wu, Shuenn-Jue L. 2015 2015-09-30 PMC N PMC7126901 26032430.0 10.1016/j.diagmicrobio.2015.05.004 vfznyyz6 0.306512 Dinh_2011, Wang_2018, Chen_2010, Lau_L_2003, Jiang_2004 Nemoto_2015, Shirato_2007
134 Bhadra_2018 Direct nucleic acid analysis of mosquitoes for high fidelity species identification and detection of Wolbachia using a cellphone Bhadra, Sanchita; Riedel, Timothy E.; Saldaña, Miguel A.; Hegde, Shivanand; Pederson, Nicole; Hughes, Grant L.; Ellington, Andrew D. 2018 2018-08-30 COMM-USE N PMC6116922 30161131.0 10.1371/journal.pntd.0006671 xzoizser 0.305097 Bhadra_2018, Njiru_2008, Zhang_2014
135 Riahi_2011 Molecular Detection of Bacterial Pathogens Using Microparticle Enhanced Double-Stranded DNA Probes Riahi, Reza; Mach, Kathleen E.; Mohan, Ruchika; Liao, Joseph C.; Wong, Pak Kin 2011 2011-08-15 PMC N PMC4104485 21718053.0 10.1021/ac2012575 sbz7m8lx 0.303180 Benson_2008, Liu_H_2006, Jiang_2011 Mori_2006, Wu_M_2018
136 Gonsalves_2019 Multiplexed detection and identification of respiratory pathogens using the NxTAG® respiratory pathogen panel Gonsalves, Sarah; Mahony, James; Rao, Arundhati; Dunbar, Sherry; Juretschko, Stefan 2019 2019-04-01 PMC N PMC7128802 30660863.0 10.1016/j.ymeth.2019.01.005 4l78xl6n 0.300969 Benson_2008, Wang_2018, Liu_H_2006, Lau_L_2003, Chen_2018 Nemoto_2015
137 Elf_S_2018 Molecular Detection of Streptococcus pyogenes by Strand Invasion Based Amplification Assay Elf, Sonja; Olli, Jenni; Hirvonen, Sanna; Auvinen, Pauliina; Eboigbodin, Kevin E. 2018 2018-07-03 PMC N PMC7099210 29967988.0 10.1007/s40291-018-0346-8 43xf39gw 0.300711 Benson_2008, Dinh_2011, Vemulapalli_2009, Wang_2018 Reddy_2011
138 Ahmed_2014 Rapid Identification of Black Grain Eumycetoma Causative Agents Using Rolling Circle Amplification Ahmed, Sarah A.; van den Ende, Bert H. G. Gerrits; Fahal, Ahmed H.; van de Sande, Wendy W. J.; de Hoog, G. S. 2014 2014-12-04 COMM-USE N PMC4256478 25474355.0 10.1371/journal.pntd.0003368 va0teako 0.300073 Njiru_2008