| 1 |
Shulman_2012 |
Evaluation of Four Different Systems for Extraction of RNA from Stool Suspensions Using MS-2 Coliphage as an Exogenous Control for RT-PCR Inhibition |
Shulman, Lester M.; Hindiyeh, Musa; Muhsen, Khitam; Cohen, Dani; Mendelson, Ella; Sofer, Danit |
2012 |
2012-07-16 |
COMM-USE |
N |
PMC3397973 |
22815706.0 |
10.1371/journal.pone.0039455 |
zl1s82yi |
0.867486 |
Borja_1992, Falcone_1997, Bhudevi_2001, Vemulapalli_2009 |
Dye_C_2008, Mikel_2015 |
| 2 |
Yu_F_2018 |
Comparative Evaluation of Three Preprocessing Methods for Extraction and Detection of Influenza A Virus Nucleic Acids from Sputum |
Yu, Fei; Qiu, Ting; Zeng, Ying; Wang, Yiyin; Zheng, Shufa; Chen, Xiao; Chen, Yu |
2018 |
2018-03-02 |
COMM-USE |
N |
PMC5840144 |
29552562.0 |
10.3389/fmed.2018.00056 |
0kt9b1ww |
0.770604 |
|
Chiu_2006 |
| 3 |
Esona_2013 |
Comparative evaluation of commercially available manual and automated nucleic acid extraction methods for rotavirus RNA detection in stools |
Esona, Mathew D.; McDonald, Sharla; Kamili, Shifaq; Kerin, Tara; Gautam, Rashi; Bowen, Michael D. |
2013 |
2013-12-31 |
None |
N |
PMC4603280 |
24036075.0 |
10.1016/j.jviromet.2013.08.023 |
aw7irlg2 |
0.763328 |
Lau_L_2003, Wang_2018, Borja_1992, Chiu_2006 |
Malik_2013, Greene_2003 |
| 4 |
Abravanel_2018 |
Performance of a commercial assay for detecting and quantifying HEV RNA in faeces |
Abravanel, Florence; Lacipière, Audrey; Lhomme, Sébastien; Dubois, Martine; Minier, Luce; Peron, Jean-Marie; Alric, Laurent; Kamar, Nassim; Izopet, Jacques |
2018 |
2018-12-31 |
PMC |
N |
PMC7106495 |
30336371.0 |
10.1016/j.jcv.2018.10.003 |
t6jvi1p8 |
0.715601 |
Borja_1992, Lau_L_2003, Esona_2013, Falcone_1997 |
Decaro_2004 |
| 5 |
Mengelle_2012 |
Prospective evaluation of a new automated nucleic acid extraction system using routine clinical respiratory specimens |
Mengelle, C.; Mansuy, J.‐M.; Sandres‐Sauné, K.; Barthe, C.; Boineau, J.; Izopet, J. |
2012 |
2012-04-12 |
PMC |
N |
PMC7166974 |
22499014.0 |
10.1002/jmv.23281 |
7qd8bc6w |
0.675038 |
Dinh_2011 |
|
| 6 |
Zhang_2018 |
Metagenomic analysis of viral nucleic acid extraction methods in respiratory clinical samples |
Zhang, Dan; Lou, Xiuyu; Yan, Hao; Pan, Junhang; Mao, Haiyan; Tang, Hongfeng; Shu, Yan; Zhao, Yun; Liu, Lei; Li, Junping; Chen, Jiang; Zhang, Yanjun; Ma, Xuejun |
2018 |
2018-10-25 |
COMM-USE |
N |
PMC6202819 |
30359242.0 |
10.1186/s12864-018-5152-5 |
1vo72gop |
0.674445 |
Chen_2018 |
|
| 7 |
Dundas_2008 |
Comparison of Automated Nucleic Acid Extraction Methods with Manual Extraction |
Dundas, Nicola; Leos, N. Kristine; Mitui, Midori; Revell, Paula; Rogers, Beverly Barton |
2008 |
2008-07-01 |
PMC |
N |
PMC2438199 |
18556770.0 |
10.2353/jmoldx.2008.070149 |
ky6fq9q8 |
0.668958 |
Esona_2013, Wang_2018, Benson_2008, Lau_L_2003 |
Gueudin_2003 |
| 8 |
Liu_H_2012 |
Performance Evaluation of the Maxwell 16 System for Extraction of Influenza Virus RNA from Diverse Samples |
Liu, Hongbo; Gan, Yan; Yang, Bo; Weng, Hui; Huang, Chunmei; Yang, Daofeng; Lei, Ping; Shen, Guanxin |
2012 |
2012-10-29 |
COMM-USE |
N |
PMC3483271 |
23144730.0 |
10.1371/journal.pone.0048094 |
j8ebp5dx |
0.623790 |
Benson_2008, Wang_2018, Vemulapalli_2009, Dye_C_2008, Lau_L_2003 |
Dye_C_2008, Gueudin_2003 |
| 9 |
Dye_C_2008 |
Evaluation of real-time RT-PCR for the quantification of FCoV shedding in the faeces of domestic cats |
Dye, Charlotte; Helps, Christopher R.; Siddell, Stuart G. |
2008 |
2008-04-30 |
None |
N |
PMC2582154 |
18243744.0 |
10.1016/j.jfms.2007.10.010 |
kgcy6zi6 |
0.562309 |
Falcone_1997, Vemulapalli_2009, Benson_2008 |
Decaro_2004, Gueudin_2003 |
| 10 |
Yang_2011 |
Comparison of commercial systems for extraction of nucleic acids from DNA/RNA respiratory pathogens |
Yang, Genyan; Erdman, Dean E.; Kodani, Maja; Kools, John; Bowen, Michael D.; Fields, Barry S. |
2011 |
2011-01-31 |
PMC |
N |
PMC7112907 |
21034773.0 |
10.1016/j.jviromet.2010.10.024 |
etc44ma6 |
0.546069 |
Falcone_1997, Borja_1992 |
Mikel_2015, Gueudin_2003 |
| 11 |
Mikel_2016 |
Preparation of MS2 Phage-Like Particles and Their Use As Potential Process Control Viruses for Detection and Quantification of Enteric RNA Viruses in Different Matrices |
Mikel, Pavel; Vasickova, Petra; Tesarik, Radek; Malenovska, Hana; Kulich, Pavel; Vesely, Tomas; Kralik, Petr |
2016 |
2016-12-01 |
COMM-USE |
N |
PMC5234545 |
28133456.0 |
10.3389/fmicb.2016.01911 |
970934vm |
0.538249 |
|
Mikel_2015, Zambenedetti_2017, Schoenike_1999 |
| 12 |
Yoda_2009 |
Application of a modified loop‐mediated isothermal amplification kit for detecting Norovirus genogroups I and II |
Yoda, Tomoko; Suzuki, Yasuhiko; Yamazaki, Kenji; Sakon, Naomi; Kanki, Masashi; Kase, Tetsuo; Takahashi, Kazuo; Inoue, Kiyoshi |
2009 |
2009-10-25 |
PMC |
N |
PMC7166440 |
19856470.0 |
10.1002/jmv.21626 |
06vah7pq |
0.516974 |
Dinh_2011, Wang_2018, Benson_2008, Song_2014, Lau_L_2003 |
|
| 13 |
Mikel_2015 |
Methods for Preparation of MS2 Phage-Like Particles and Their Utilization as Process Control Viruses in RT-PCR and qRT-PCR Detection of RNA Viruses From Food Matrices and Clinical Specimens |
Mikel, P.; Vasickova, P.; Kralik, P. |
2015 |
2015-02-25 |
PMC |
N |
PMC7090958 |
25711389.0 |
10.1007/s12560-015-9188-2 |
82iks0xf |
0.510079 |
|
Zambenedetti_2017 |
| 14 |
MINAMI-FUKUDA_2013 |
Detection of Bovine Group A Rotavirus Using Rapid Antigen Detection Kits, RT-PCR and Next-Generation DNA Sequencing |
MINAMI-FUKUDA, Fujiko; NAGAI, Makoto; TAKAI, Hikaru; MURAKAMI, Toshiaki; OZAWA, Tadashi; TSUCHIAKA, Shinobu; OKAZAKI, Sachiko; KATAYAMA, Yukie; OBA, Mami; NISHIURA, Naomi; SASSA, Yukiko; OMATSU, Tsutomu; FURUYA, Tetsuya; KOYAMA, Satoshi; SHIRAI, Junsuke; TSUNEMITSU, Hiroshi; FUJII, Yoshiki; KATAYAMA, Kazuhiko; MIZUTANI, Tetsuya |
2013 |
2013-08-02 |
NONCOMM |
N |
PMC3942952 |
23912876.0 |
10.1292/jvms.13-0265 |
vsjy9oaf |
0.503263 |
Dinh_2011, Wang_2018, Vemulapalli_2009 |
Malik_2013, Decaro_2004 |
| 15 |
Greene_2003 |
Evaluation of the NucliSens® Basic Kit assay for detection of Norwalk virus RNA in stool specimens |
Greene, Shermalyn R; Moe, Christine L; Jaykus, Lee-Ann; Cronin, Mike; Grosso, Lynell; Aarle, Pierre van |
2003 |
2003-03-31 |
PMC |
N |
PMC7119547 |
12565163.0 |
10.1016/s0166-0934(02)00286-0 |
3c1vue0y |
0.492643 |
Dinh_2011, Lau_L_2003, Wang_2018, Vemulapalli_2009, Benson_2008 |
Malik_2013, Decaro_2004 |
| 16 |
Arita_2009 |
Development of a reverse transcription-loop-mediated isothermal amplification (RT-LAMP) system for a highly sensitive detection of enterovirus in the stool samples of acute flaccid paralysis cases |
Arita, Minetaro; Ling, Hua; Yan, Dongmei; Nishimura, Yorihiro; Yoshida, Hiromu; Wakita, Takaji; Shimizu, Hiroyuki |
2009 |
2009-12-16 |
COMM-USE |
N |
PMC2803793 |
20015403.0 |
10.1186/1471-2334-9-208 |
hhi8nf1r |
0.487852 |
Dinh_2011, Fan_Q_2012, Chen_2010, Vemulapalli_2009, Falcone_1997 |
Hanaki_2013, Li_H_2019, Malik_2013 |
| 17 |
Chiu_2006 |
Automated extraction protocol for quantification of SARS-Coronavirus RNA in serum: an evaluation study |
Chiu, Rossa WK; Jin, Yongjie; Chung, Grace TY; Lui, Wing-bong; Chan, Anthony TC; Lim, Wilina; Dennis Lo, YM |
2006 |
2006-02-09 |
COMM-USE |
N |
PMC1382231 |
16466582.0 |
10.1186/1471-2334-6-20 |
gwd8qin6 |
0.486221 |
Wang_2018, Lau_L_2003, Bruce_2020, Esona_2013 |
Poon_2003 |
| 18 |
Rossi_2015 |
Evaluation of ViroCyt(®) Virus Counter for Rapid Filovirus Quantitation |
Rossi, Cynthia A.; Kearney, Brian J.; Olschner, Scott P.; Williams, Priscilla L.; Robinson, Camenzind G.; Heinrich, Megan L.; Zovanyi, Ashley M.; Ingram, Michael F.; Norwood, David A.; Schoepp, Randal J. |
2015 |
2015-02-20 |
COMM-USE |
N |
PMC4379551 |
25710889.0 |
10.3390/v7030857 |
ic3r2g7s |
0.457429 |
Dinh_2011, Falcone_1997 |
|
| 19 |
Cardoso_2008 |
Validation of an Immunohistochemistry Assay to Detect Turkey Coronavirus: A Rapid and Simple Screening Tool for Limited Resource Settings |
Cardoso, T. C.; Castanheira, T. L. L.; Teixeira, M. C. B.; Rosa, A. C. G.; Hirata, K. Y.; Astolphi, R. D.; Luvizotto, M. C. R. |
2008 |
2008-07-23 |
PMC |
N |
PMC7107114 |
18577614.0 |
10.3382/ps.2008-00042 |
iq2bjn3n |
0.431577 |
Ha_S_2004, Vemulapalli_2009, Falcone_1997, Dinh_2011 |
|
| 20 |
Chen_2010 |
Specific real-time reverse transcription-polymerase chain reaction for detection and quantitation of turkey coronavirus RNA in tissues and feces from turkeys infected with turkey coronavirus |
Chen, Yi-Ning; Wu, Ching Ching; Bryan, Thomas; Hooper, Tom; Schrader, Donna; Lin, Tsang Long |
2010 |
2010-02-28 |
PMC |
N |
PMC7112835 |
19917315.0 |
10.1016/j.jviromet.2009.11.012 |
kzljmzzw |
0.417859 |
Falcone_1997, Vemulapalli_2009, Dinh_2011, Fan_Q_2012, Borja_1992 |
Chen_2015, Wang_2018 |
| 21 |
Koopmans_1993 |
Optimization of extraction and PCR amplification of RNA extracts from paraffin-embedded tissue in different fixatives |
Koopmans, Marion; Monroe, Stephan S.; Coffield, Lisa M.; Zaki, Sherif R. |
1993 |
1993-07-31 |
PMC |
N |
|
8396155.0 |
10.1016/0166-0934(93)90076-4 |
7xj27r98 |
0.406672 |
Ha_S_2004, Falcone_1997, Thiel_2002 |
Ha_S_2004, Schoenike_1999 |
| 22 |
Zambenedetti_2017 |
Internal control for real-time polymerase chain reaction based on MS2 bacteriophage for RNA viruses diagnostics |
Zambenedetti, Miriam Ribas; Pavoni, Daniela Parada; Dallabona, Andreia Cristine; Dominguez, Alejandro Correa; Poersch, Celina de Oliveira; Fragoso, Stenio Perdigão; Krieger, Marco Aurélio |
2017 |
2017-04-06 |
COMM-USE |
N |
PMC5398160 |
28403327.0 |
10.1590/0074-02760160380 |
mtk3qxue |
0.390078 |
|
Mikel_2015, Wang_2015 |
| 23 |
Bruce_2020 |
RT-qPCR DETECTION OF SARS-CoV-2 RNA FROM PATIENT NASOPHARYNGEAL SWAB USING QIAGEN RNEASY KITS OR DIRECTLY VIA OMISSION OF AN RNA EXTRACTION STEP |
Emily A Bruce; Scott Tighe; Jessica J Hoffman; Pheobe Laaguiby; Diana L Gerrard; Sean A. Diehl; Debra G. B. Leonard; Christopher D. Huston; Beth D. Kirkpatrick; Jessica W Crothers; Julie Dragon; Jason W Botten |
2020 |
2020-03-21 |
BioRxiv |
Y |
|
|
10.1101/2020.03.20.001008 |
oc584x1k |
0.368996 |
Chiu_2006, Benson_2008, Chen_2018, Thiel_2002 |
Gueudin_2003, Nemoto_2015, Keyaerts_2006 |
| 24 |
Kalikiri_2020 |
High-throughput extraction of SARS-CoV-2 RNA from nasopharyngeal swabs using solid-phase reverse immobilization beads |
Mahesh K R Kalikiri; Mohammad Rubayet Hasan; Faheem Mirza; Thabisile Xaba; Patrick Tang; Stephan Lorenz |
2020 |
2020-04-11 |
BioRxiv |
Y |
|
|
10.1101/2020.04.08.20055731 |
bx2xspbe |
0.368855 |
Dinh_2011, Benson_2008, Chen_2018, Wang_2018 |
Gueudin_2003 |
| 25 |
Yoda_2007 |
Evaluation and application of reverse transcription loop‐mediated isothermal amplification for detection of noroviruses |
Yoda, Tomoko; Suzuki, Yasuhiko; Yamazaki, Kenji; Sakon, Naomi; Kanki, Masashi; Aoyama, Ikuko; Tsukamoto, Teizo |
2007 |
2007-01-23 |
PMC |
N |
PMC7166943 |
17245722.0 |
10.1002/jmv.20802 |
lshsgex3 |
0.355694 |
Dinh_2011, Benson_2008, Vemulapalli_2009, Falcone_1997, Nitsche_2004 |
|
| 26 |
Beltran-Pavez_2020 |
SARS-CoV-2 detection from nasopharyngeal swab samples without RNA extraction |
Carolina Beltran-Pavez; Chantal L. Marquez; Gabriela Munoz; Fernando Valiente-Echeverria; Aldo Gaggero; Ricardo Soto-Rifo; Gonzalo P. Barriga |
2020 |
2020-03-30 |
BioRxiv |
Y |
|
|
10.1101/2020.03.28.013508 |
pg6893i5 |
0.349948 |
Dinh_2011, Benson_2008, Erlandsson_2011 |
|
| 27 |
Zhong_2007 |
Viral RNA extraction for in-the-field analysis |
Zhong, Jiang F.; Weiner, Leslie P.; Burke, Kathy; Taylor, Clive R. |
2007 |
2007-09-30 |
None |
N |
PMC3635480 |
17548117.0 |
10.1016/j.jviromet.2007.04.006 |
zduf4f73 |
0.343044 |
|
Mikel_2015 |
| 28 |
Ninove_2011 |
RNA and DNA Bacteriophages as Molecular Diagnosis Controls in Clinical Virology: A Comprehensive Study of More than 45,000 Routine PCR Tests |
Ninove, Laetitia; Nougairede, Antoine; Gazin, Celine; Thirion, Laurence; Delogu, Ilenia; Zandotti, Christine; Charrel, Remi N.; De Lamballerie, Xavier |
2011 |
2011-02-09 |
COMM-USE |
N |
PMC3036576 |
21347398.0 |
10.1371/journal.pone.0016142 |
8ctsa9sd |
0.337715 |
Chen_2018, Benson_2008, Wang_2018, Thiel_2002 |
Zambenedetti_2017, Mikel_2015 |
| 29 |
Marzinotto_2020 |
A streamlined approach to rapidly detect SARS-CoV-2 infection, avoiding RNA extraction |
Stefania Marzinotto; Catia Mio; Adriana Cifu'; Roberto Verardo; Corrado Pipan; Claudio Schneider; Francesco Curcio |
2020 |
2020-04-11 |
BioRxiv |
Y |
|
|
10.1101/2020.04.06.20054114 |
mi6w8ppe |
0.331364 |
Chen_2018 |
Kalikiri_2020 |
| 30 |
Wang_2016 |
A GeXP-Based Assay for Simultaneous Detection of Multiple Viruses in Hospitalized Children with Community Acquired Pneumonia |
Wang, Le; Zhao, Mengchuan; Shi, Zhongren; Feng, Zhishan; Guo, Weiwei; Yang, Shuo; Liu, Lanping; Li, Guixia |
2016 |
2016-09-14 |
COMM-USE |
N |
PMC5023126 |
27627439.0 |
10.1371/journal.pone.0162411 |
nz6eqcdb |
0.314500 |
Dinh_2011, Vemulapalli_2009 |
|