Topic 12 -- Abstracts with Biological Entities (English) - 75 Topics / Sub-Topic Model 29 - 15 Topics

cite ad title authors publish year publish time dataset abstract mentions covid pmcid pubmed id doi cord uid topic weight Similarity scispacy Similarity specter
1 Tay_M_2016 Antibody-Mediated Internalization of Infectious HIV-1 Virions Differs among Antibody Isotypes and Subclasses Tay, Matthew Zirui; Liu, Pinghuang; Williams, LaTonya D.; McRaven, Michael D; Sawant, Sheetal; Gurley, Thaddeus C; Xu, Thomas T.; Dennison, S. Moses; Liao, Hua-Xin; Chenine, Agnès-Laurence; Alam, S. Munir; Moody, M. Anthony; Hope, Thomas J.; Haynes, Barton F.; Tomaras, Georgia D. 2016 2016-08-31 COMM-USE N PMC5007037 27579713.0 10.1371/journal.ppat.1005817 msbt1y4o 0.812411 Anand_2019
2 Dey_A_2009 Biochemical and biophysical comparison of cleaved and uncleaved soluble, trimeric HIV-1 envelope glycoproteins Dey, Antu K.; David, Kathryn B.; Lu, Min; Moore, John P. 2009 2009-03-01 PMC N PMC3795524 19135223.0 10.1016/j.virol.2008.12.009 ei0pem9v 0.719556 Jiang_2006 Prabakaran_2007, Anand_2019
3 Boily-Larouche_2009 Functional Genetic Variants in DC-SIGNR Are Associated with Mother-to-Child Transmission of HIV-1 Boily-Larouche, Geneviève; Iscache, Anne-Laure; Zijenah, Lynn S.; Humphrey, Jean H.; Mouland, Andrew J.; Ward, Brian J.; Roger, Michel 2009 2009-10-07 COMM-USE N PMC2752805 19809496.0 10.1371/journal.pone.0007211 4p398ewl 0.681584 Boily-Larouche_2012
4 Anand_2019 Antibody-Induced Internalization of HIV-1 Env Proteins Limits Surface Expression of the Closed Conformation of Env Anand, Sai Priya; Grover, Jonathan R.; Tolbert, William D.; Prévost, Jérémie; Richard, Jonathan; Ding, Shilei; Baril, Sophie; Medjahed, Halima; Evans, David T.; Pazgier, Marzena; Mothes, Walther; Finzi, Andrés 2019 2019-03-20 None N PMC6532100 30894474.0 10.1128/jvi.00293-19 8h43p7wf 0.649187 Compton_2014 Prabakaran_2007
5 Gale_2020 How virus size and attachment parameters affect the temperature sensitivity of virus binding to host cells: Predictions of a thermodynamic model for arboviruses and HIV Gale, Paul 2020 2020-03-12 PMC N 10.1016/j.mran.2020.100104 pp6bl941 0.648507 Compton_2014
6 van_Weringh_2011 HIV-1 Modulates the tRNA Pool to Improve Translation Efficiency van Weringh, Anna; Ragonnet-Cronin, Manon; Pranckeviciene, Erinija; Pavon-Eternod, Mariana; Kleiman, Lawrence; Xia, Xuhua 2011 2011-01-07 NONCOMM N PMC3098512 21216840.0 10.1093/molbev/msr005 pgy1a1d5 0.621863
7 Zhou_2007 Structural definition of a conserved neutralization epitope on HIV-1 gp120 Zhou, Tongqing; Xu, Ling; Dey, Barna; Hessell, Ann J.; Van Ryk, Donald; Xiang, Shi-Hua; Yang, Xinzhen; Zhang, Mei-Yun; Zwick, Michael B.; Arthos, James; Burton, Dennis R.; Dimitrov, Dimiter S.; Sodroski, Joseph; Wyatt, Richard; Nabel, Gary J.; Kwong, Peter D. 2007 2007-02-01 None N PMC2584968 17301785.0 10.1038/nature05580 t1dpo0pl 0.605830 Dey_A_2009, Jiang_2006, Gnirß_2014 Anand_2019, Prabakaran_2007
8 Boily-Larouche_2012 Naturally-Occurring Genetic Variants in Human DC-SIGN Increase HIV-1 Capture, Cell-Transfer and Risk of Mother-To-Child Transmission Boily-Larouche, Geneviève; Milev, Miroslav P.; Zijenah, Lynn S.; Labbé, Annie-Claude; Zannou, Djimon M.; Humphrey, Jean H.; Ward, Brian J.; Poudrier, Johanne; Mouland, Andrew J.; Cohen, Éric A.; Roger, Michel 2012 2012-07-10 COMM-USE N PMC3393705 22808239.0 10.1371/journal.pone.0040706 8s4bsnlw 0.587270 Clapham_1991, Compton_2014, Yu_J_2015 Boily-Larouche_2009
9 Stantchev_2012 Cell-type specific requirements for thiol/disulfide exchange during HIV-1 entry and infection Stantchev, Tzanko S; Paciga, Mark; Lankford, Carla R; Schwartzkopff, Franziska; Broder, Christopher C; Clouse, Kathleen A 2012 2012-12-03 COMM-USE N PMC3526565 23206338.0 10.1186/1742-4690-9-97 3jw2tqfm 0.585978 Compton_2014 Ma_G_2004
10 Tripet_2006 Template-based coiled-coil antigens elicit neutralizing antibodies to the SARS-coronavirus Tripet, Brian; Kao, Daniel J.; Jeffers, Scott A.; Holmes, Kathryn V.; Hodges, Robert S. 2006 2006-08-31 PMC N PMC7129695 16697221.0 10.1016/j.jsb.2006.03.019 xr6jlyij 0.580902 Dey_A_2009 Du_L_2007
11 Wen_M_2010 GPI-anchored single chain Fv - an effective way to capture transiently-exposed neutralization epitopes on HIV-1 envelope spike Wen, Michael; Arora, Reetakshi; Wang, Huiqiang; Liu, Lihong; Kimata, Jason T; Zhou, Paul 2010 2010-10-06 COMM-USE N PMC2959034 20923574.0 10.1186/1742-4690-7-79 tzq389yi 0.571822 Jiang_2006, Compton_2014, Dey_A_2009 Anand_2019
12 Geleziunas_1994 Human Immunodeficiency Virus Type 1-Associated Cd4 Downmodulation Geleziunas, Romas; Bour, Stephane; Wainberg, Mark A. 1994 1994-12-31 PMC N PMC7131540 7817874.0 10.1016/s0065-3527(08)60330-9 8mqcs8c7 0.541259 Compton_2014 Ding_2014
13 Chaipan_2010 Incorporation of podoplanin into HIV released from HEK-293T cells, but not PBMC, is required for efficient binding to the attachment factor CLEC-2 Chaipan, Chawaree; Steffen, Imke; Tsegaye, Theodros Solomon; Bertram, Stephanie; Glowacka, Ilona; Kato, Yukinari; Schmökel, Jan; Münch, Jan; Simmons, Graham; Gerardy-Schahn, Rita; Pöhlmann, Stefan 2010 2010-05-19 COMM-USE N PMC2885308 20482880.0 10.1186/1742-4690-7-47 7dfwtmz7 0.533687 Zhao_2013, Compton_2014, Greene_2012 Martinez_2013, Solomon_Tsegaye_2013
14 Warren_2019 Selective use of primate CD4 receptors by HIV-1 Warren, Cody J.; Meyerson, Nicholas R.; Dirasantha, Obaiah; Feldman, Emily R.; Wilkerson, Gregory K.; Sawyer, Sara L. 2019 2019-06-10 COMM-USE N PMC6586362 31181085.0 10.1371/journal.pbio.3000304 deqiets2 0.521002 Compton_2014
15 Clapham_1991 Specific cell surface requirements for the infection of CD4-positive cells by human immunodeficiency virus types 1 and 2 and by simian immunodeficiency virus Clapham, Paul R.; Blanc, Dominique; Weiss, Robin A. 1991 1991-04-30 PMC N PMC7131431 1673040.0 10.1016/0042-6822(91)90904-p okyzeo22 0.512470
16 Wang_2018 Inhibition of Human Immunodeficiency Virus Type 1 Entry by a Keggin Polyoxometalate Wang, Xiaoli; Wang, Jiao; Zhang, Wenmei; Li, Boye; Zhu, Ying; Hu, Qin; Yang, Yishu; Zhang, Xiaoguang; Yan, Hong; Zeng, Yi 2018 2018-05-16 COMM-USE N PMC5977258 29772712.0 10.3390/v10050265 1ghbutov 0.503234 Jiang_2006, Compton_2014, Brinkmann_2017 Jia_R_2015
17 Pasquato_2007 Heparin enhances the furin cleavage of HIV-1 gp160 peptides Pasquato, A.; Dettin, M.; Basak, A.; Gambaretto, R.; Tonin, L.; Seidah, N.G.; Di Bello, C. 2007 2007-12-22 PMC N PMC7125586 18037384.0 10.1016/j.febslet.2007.11.050 r7jt95ko 0.489541
18 Qi_M_2013 Rab11-FIP1C and Rab14 Direct Plasma Membrane Sorting and Particle Incorporation of the HIV-1 Envelope Glycoprotein Complex Qi, Mingli; Williams, Janice A.; Chu, Hin; Chen, Xuemin; Wang, Jaang-Jiun; Ding, Lingmei; Akhirome, Ehiole; Wen, Xiaoyun; Lapierre, Lynne A.; Goldenring, James R.; Spearman, Paul 2013 2013-04-04 COMM-USE N PMC3616983 23592992.0 10.1371/journal.ppat.1003278 m3rmu5ty 0.484886 Greene_2012, Murakami_2012 Rowe_2008
19 Ding_2014 HIV-1 mutates to evade IFITM1 restriction Ding, Shilei; Pan, Qinghua; Liu, Shan-Lu; Liang, Chen 2014 2014-04-30 PMC N PMC4274668 24725927.0 10.1016/j.virol.2014.01.020 qi08nbo4 0.483397 Compton_2014, Yu_J_2015, Lee_W_2018 Jia_R_2015, Yu_J_2015, Chutiwitoonchai_2013
20 Solomon_Tsegaye_2013 Platelet activation suppresses HIV-1 infection of T cells Solomon Tsegaye, Theodros; Gnirß, Kerstin; Rahe-Meyer, Niels; Kiene, Miriam; Krämer-Kühl, Annika; Behrens, Georg; Münch, Jan; Pöhlmann, Stefan 2013 2013-05-01 COMM-USE N PMC3660175 23634812.0 10.1186/1742-4690-10-48 6olhl2pk 0.479264 Compton_2014 Ma_G_2004
21 Ozorowski_2017 Open and Closed Structures Reveal Allostery and Pliability in the HIV-1 Envelope Spike Ozorowski, Gabriel; Pallesen, Jesper; de Val, Natalia; Lyumkis, Dmitry; Cottrell, Christopher A.; Torres, Jonathan L.; Copps, Jeffrey; Stanfield, Robyn L.; Cupo, Albert; Pugach, Pavel; Moore, John P.; Wilson, Ian A.; Ward, Andrew B. 2017 2017-07-12 PMC N PMC5538736 28700571.0 10.1038/nature23010 e6um3fc8 0.467184 Dey_A_2009, Zhou_2007 Prabakaran_2007
22 Hecker_1997 Specific binding of HIV-1 envelope protein gp120 to the structural membrane proteins ezrin and moesin Hecker, Claudia; Weise, Christoph; Schneider-Schaulies, Jürgen; Holmes, Harvey C; ter Meulen, Volker 1997 1997-06-30 PMC N PMC7126478 9213396.0 10.1016/s0168-1702(97)00039-7 vzz1i6qg 0.434581 Greene_2012
23 Yu_J_2018 The Inhibition of HIV-1 Entry Imposed by Interferon Inducible Transmembrane Proteins Is Independent of Co-Receptor Usage Yu, Jingyou; Liu, Shan-Lu 2018 2018-08-07 COMM-USE N PMC6115839 30087232.0 10.3390/v10080413 v6hjp6mo 0.415574 Compton_2014, Brinkmann_2017, Yu_J_2015 Chutiwitoonchai_2013, Yu_J_2015
24 Yu_J_2015 IFITM Proteins Restrict HIV-1 Infection by Antagonizing the Envelope Glycoprotein Yu, Jingyou; Li, Minghua; Wilkins, Jordan; Ding, Shilei; Swartz, Talia H.; Esposito, Anthony M.; Zheng, Yi-Min; Freed, Eric O.; Liang, Chen; Chen, Benjamin K.; Liu, Shan-Lu 2015 2015-10-06 None N PMC4602366 26387945.0 10.1016/j.celrep.2015.08.055 uiizoqff 0.402510 Compton_2014 Ding_2014, Chutiwitoonchai_2013, Compton_2014
25 Jiang_2006 Elicitation of neutralizing antibodies by intranasal administration of recombinant vesicular stomatitis virus expressing human immunodeficiency virus type 1 gp120 Jiang, Pengfei; Liu, Yanxia; Yin, Xiaolei; Yuan, Fei; Nie, YuChun; Luo, Min; Aihua, Zheng; Liyin, Du; Ding, Mingxiao; Deng, Hongkui 2006 2006-01-13 PMC N PMC7092882 16313884.0 10.1016/j.bbrc.2005.11.067 vct6xakc 0.398753
26 Pessi_2012 A General Strategy to Endow Natural Fusion-protein-Derived Peptides with Potent Antiviral Activity Pessi, Antonello; Langella, Annunziata; Capitò, Elena; Ghezzi, Silvia; Vicenzi, Elisa; Poli, Guido; Ketas, Thomas; Mathieu, Cyrille; Cortese, Riccardo; Horvat, Branka; Moscona, Anne; Porotto, Matteo 2012 2012-05-16 COMM-USE N PMC3353973 22666328.0 10.1371/journal.pone.0036833 53s1vumb 0.390172 Compton_2014 Park_2017
27 Prabakaran_2007 Structure and Function of the HIV Envelope Glycoprotein as Entry Mediator, Vaccine Immunogen, and Target for Inhibitors Prabakaran, Ponraj; Dimitrov, Antony S.; Fouts, Timothy R.; Dimitrov, Dimiter S. 2007 2007-12-31 PMC N PMC7111665 17586312.0 10.1016/s1054-3589(07)55002-7 v9ukeh7n 0.390147 Compton_2014, Dumas_2014 Anand_2019
28 Nishikawa_2008 Novel screening systems for HIV-1 fusion mediated by two extra-virion heptad repeats of gp41 Nishikawa, Hiroki; Kodama, Eiichi; Sakakibara, Ayako; Fukudome, Ayako; Izumi, Kazuki; Oishi, Shinya; Fujii, Nobutaka; Matsuoka, Masao 2008 2008-10-31 PMC N PMC7114109 18584890.0 10.1016/j.antiviral.2008.05.006 nh4gf1p2 0.389701 Veiga_2006
29 Brender_2009 Helical Conformation of the SEVI Precursor Peptide PAP(248-286), a Dramatic Enhancer of HIV Infectivity, Promotes Lipid Aggregation and Fusion Brender, Jeffrey R.; Hartman, Kevin; Gottler, Lindsey M.; Cavitt, Marchello E.; Youngstrom, Daniel W.; Ramamoorthy, Ayyalusamy 2009 2009-11-01 PMC N PMC2770606 19883590.0 10.1016/j.bpj.2009.08.034 ovmnlj1d 0.385904 Modis_2013
30 Li_S_2005 Characterization of BIV Env core: Implication for mechanism of BIV-mediated cell fusion Li, Shu; Zhu, Jieqing; Peng, Yu; Cui, Shanshan; Wang, Chunping; Gao, George F.; Tien, Po 2005 2005-04-08 PMC N PMC7117376 15737628.0 10.1016/j.bbrc.2005.01.160 rims73rl 0.374991 Compton_2014
31 Lambert_2013 Dendritic Cell Immunoreceptor Is a New Target for Anti-AIDS Drug Development: Identification of DCIR/HIV-1 Inhibitors Lambert, Alexandra A.; Azzi, Arezki; Lin, Sheng-Xiang; Allaire, Geneviève; St-Gelais, Karianne P.; Tremblay, Michel J.; Gilbert, Caroline 2013 2013-07-09 COMM-USE N PMC3706466 23874461.0 10.1371/journal.pone.0067873 nadhhe5k 0.366235 Compton_2014
32 Caffrey_2011 HIV envelope: challenges and opportunities for development of entry inhibitors Caffrey, Michael 2011 2011-04-30 None N PMC3071980 21377881.0 10.1016/j.tim.2011.02.001 or76kdgl 0.343433 Compton_2014 Prabakaran_2007
33 Gale_2018 Using thermodynamic parameters to calibrate a mechanistic dose-response for infection of a host by a virus Gale, Paul 2018 2018-04-30 PMC N PMC7103988 10.1016/j.mran.2018.01.002 4eklkwsa 0.335910 Rott_1987, Casasnovas_2013
34 Ashkenazi_2012 Sphingopeptides: dihydrosphingosine-based fusion inhibitors against wild-type and enfuvirtide-resistant HIV-1 Ashkenazi, Avraham; Viard, Mathias; Unger, Linor; Blumenthal, Robert; Shai, Yechiel 2012 2012-08-07 PMC N PMC3475257 22872679.0 10.1096/fj.12-215111 hczwgf6o 0.332626 Compton_2014, Greene_2012 Harada_2005