Topic 08 -- Abstracts with Biological Entities (English) - 75 Topics / Sub-Topic Model 29 - 15 Topics

cite ad title authors publish year publish time dataset abstract mentions covid pmcid pubmed id doi cord uid topic weight Similarity scispacy Similarity specter
1 Nayak_2009 Influenza virus morphogenesis and budding Nayak, Debi P.; Balogun, Rilwan A.; Yamada, Hiroshi; Zhou, Z. Hong; Barman, Subrata 2009 2009-08-31 None N PMC2730999 19481124.0 10.1016/j.virusres.2009.05.010 5byaw6oa 0.894679 Weissenhorn_2013, Lenard_2008
2 Nayak_2004 Assembly and budding of influenza virus Nayak, Debi P.; Hui, Eric Ka-Wai; Barman, Subrata 2004 2004-12-31 PMC N 10.1016/j.virusres.2004.08.012 73jpz3nu 0.832253 Weissenhorn_2013, Lenard_2008
3 Vennema_1996 Nucleocapsid-independent assembly of coronavirus-like particles by co-expression of viral envelope protein genes. Vennema, H; Godeke, G J; Rossen, J W; Voorhout, W F; Horzinek, M C; Opstelten, D J; Rottier, P J 1996 1996-04-15 PMC N PMC450121 8617249.0 xxgwcv83 0.817960
4 Li_M_2017 Japanese encephalitis virus counteracts BST2 restriction via its envelope protein E Li, Mei; Wang, Ping; Zheng, Zifeng; Hu, Kai; Zhang, Mudan; Guan, Xinmeng; Fu, Ming; Zhang, Di; Wang, Wei; Xiao, Gengfu; Hu, Qinxue; Liu, Yalan 2017 2017-10-31 PMC N PMC7111294 28710958.0 10.1016/j.virol.2017.07.008 g3l80i4v 0.799190 Greene_2012
5 Lázaro_2018 Why Enveloped Viruses Need Cores—The Contribution of a Nucleocapsid Core to Viral Budding Lázaro, Guillermo R.; Mukhopadhyay, Suchetana; Hagan, Michael F. 2018 2018-02-01 PMC N PMC5985022 29414708.0 10.1016/j.bpj.2017.11.3782 y57h3ge7 0.770786 Weissenhorn_2013
6 Ng_M_2004 Topographic Changes in SARS Coronavirus–infected Cells at Late Stages of Infection Ng, M.L.; Lee, J.W.M.; Leong, M.L.N.; Ling, A.-E.; Tan, H.-C.; Ooi, E.E. 2004 2004-11-23 PMC N PMC3328989 15550199.0 10.3201/eid1011.040195 9rjbmsvb 0.717725 Welsch_2010
7 UNKNOWN_1996 Targeting of Moloney murine leukemia virus gag precursor to the site of virus budding None 1996 1996-12-02 NONCOMM N PMC2133957 8991095.0 8c74etew 0.705810 Greene_2012, Hobman_1993, Weissenhorn_2013 UNKNOWN_1994, Tetsuya_1986
8 Chasey_1976 Morphogenesis of avian infectious bronchitis virus in primary chick kidney cells Chasey, D.; Alexander, D. J. 1976 1976-01-01 PMC N PMC7086645 187144.0 10.1007/bf01317869 1xglujqk 0.682751 Rowe_2008, Lenard_2008 Patterson_1976, Fuller_1985
9 Sturman_1985 The novel glycoproteins of coronaviruses Sturman, Lawrence; Holmes, Kathyrn 1985 1985-01-31 PMC N PMC7135477 10.1016/0968-0004(85)90010-6 5ugpul3v 0.651955 Compton_2014
10 Nieper_1998 Rapid preparation of plasma membranes from avian lymphoid cells and fibroblasts for virus binding studies Nieper, Hermann; Müller, Hermann 1998 1998-06-30 PMC N PMC7119565 9694323.0 10.1016/s0166-0934(98)00014-7 ggqupsck 0.607321 Roman_1985 Tetsuya_1986
11 Wang_2019 Severe acute respiratory syndrome coronavirus spike protein counteracts BST2‐mediated restriction of virus‐like particle release Wang, Shiu‐Mei; Huang, Kuo‐Jung; Wang, Chin‐Tien 2019 2019-07-10 PMC N PMC7166632 31199522.0 10.1002/jmv.25518 6950p8i9 0.605933 Greene_2012, Compton_2014
12 Rowe_2008 Roles for the recycling endosome, Rab8, and Rab11 in hantavirus release from epithelial cells Rowe, Regina K.; Suszko, Jason W.; Pekosz, Andrew 2008 2008-12-20 None N PMC2648827 18951604.0 10.1016/j.virol.2008.09.021 tp20y468 0.589171 Greene_2012, Compton_2014
13 Murakami_2012 Retroviral Env Glycoprotein Trafficking and Incorporation into Virions Murakami, Tsutomu 2012 2012-07-02 COMM-USE N PMC3395148 22811910.0 10.1155/2012/682850 yx6p2yhk 0.587304 Compton_2014, Hobman_1993, Greene_2012 Johnson_2011, Ujike_2015
14 Ujike_2015 Incorporation of Spike and Membrane Glycoproteins into Coronavirus Virions Ujike, Makoto; Taguchi, Fumihiro 2015 2015-04-03 COMM-USE N PMC4411675 25855243.0 10.3390/v7041700 zz1c1dpd 0.568834 Hobman_1993
15 Jia_X_2014 Structural basis of HIV-1 Vpu-mediated BST2 antagonism via hijacking of the clathrin adaptor protein complex 1 Jia, Xiaofei; Weber, Erin; Tokarev, Andrey; Lewinski, Mary; Rizk, Maryan; Suarez, Marissa; Guatelli, John; Xiong, Yong 2014 2014-04-29 COMM-USE N PMC4018625 24843023.0 10.7554/elife.02362 20f334do 0.568398 Greene_2012
16 Weissenhorn_2013 How to get out: ssRNA enveloped viruses and membrane fission Weissenhorn, Winfried; Poudevigne, Emilie; Effantin, Gregory; Bassereau, Patricia 2013 2013-04-30 PMC N PMC7102784 23583788.0 10.1016/j.coviro.2013.03.011 zmqvh4r7 0.554644 Hobman_1993 Li_Y_2014
17 Mall_2002 Transmembrane α helices Mall, Sanjay; Malcolm East, J.; Lee, Anthony G. 2002 2002-12-31 PMC N PMC7157917 10.1016/s1063-5823(02)52014-7 7d58f1k3 0.544050 Ge_M_2011
18 Dewerchin_2014 Myosins 1 and 6, myosin light chain kinase, actin and microtubules cooperate during antibody-mediated internalisation and trafficking of membrane-expressed viral antigens in feline infectious peritonitis virus infected monocytes Dewerchin, Hannah L; Desmarets, Lowiese M; Noppe, Ytse; Nauwynck, Hans J 2014 2014-02-12 COMM-USE N PMC3937040 24517254.0 10.1186/1297-9716-45-17 qgefumxe 0.541977 Greene_2012
19 Maeda_1999 Release of Coronavirus E Protein in Membrane Vesicles from Virus-Infected Cells and E Protein-Expressing Cells Maeda, Junko; Maeda, Akihiko; Makino, Shinji 1999 1999-10-25 PMC N PMC7131035 10544100.0 10.1006/viro.1999.9955 br4z3na6 0.540453
20 Wang_2014 BST2/CD317 counteracts human coronavirus 229E productive infection by tethering virions at the cell surface Wang, Shiu-Mei; Huang, Kuo-Jung; Wang, Chin-Tien 2014 2014-01-20 PMC N PMC7111910 24418563.0 10.1016/j.virol.2013.11.030 pnr5w90i 0.536632 Greene_2012, Compton_2014 Krzyzaniak_2013
21 Welsch_2007 More than one door – Budding of enveloped viruses through cellular membranes Welsch, Sonja; Müller, Barbara; Kräusslich, Hans-Georg 2007 2007-05-22 PMC N PMC7126970 17434167.0 10.1016/j.febslet.2007.03.060 24ktozs7 0.521089 Weissenhorn_2013, Hobman_1993, Lenard_2008 Más_V_2013, Modis_2009
22 Tetsuya_1986 Inhibition of the assembly of Newcastle disease virus by monensin Tetsuya, Yoshida; Yasuhiro, Nakayama; Hiroshi, Nagura; Tetsuya, Toyoda; Kazuo, Nishikawa; Michinari, Hamaguchi; Yoshiyuki, Nagai 1986 1986-02-28 PMC N PMC7134188 3518275.0 10.1016/0168-1702(86)90040-7 q3r8u3gh 0.520717 Hobman_1993, Greene_2012
23 Welsch_2010 Electron Tomography Reveals the Steps in Filovirus Budding Welsch, Sonja; Kolesnikova, Larissa; Krähling, Verena; Riches, James D.; Becker, Stephan; Briggs, John A. G. 2010 2010-04-29 COMM-USE N PMC2861712 20442788.0 10.1371/journal.ppat.1000875 lfvso15k 0.509548 Weissenhorn_2013 Regan_2013
24 Navaratnarajah_2008 Assembly of Viruses: Enveloped Particles Navaratnarajah, C.K.; Warrier, R.; Kuhn, R.J. 2008 2008-12-31 PMC N 10.1016/b978-012374410-4.00667-1 uca9l5d7 0.484363 Weissenhorn_2013, Lenard_2008, Hobman_1993
25 Hsu_K_2010 Membrane Potential Depolarization as a Triggering Mechanism for Vpu-Mediated HIV-1 Release Hsu, Kate; Han, Jin; Shinlapawittayatorn, Krekwit; Deschenes, Isabelle; Marbán, Eduardo 2010 2010-09-22 None N PMC2941015 20858415.0 10.1016/j.bpj.2010.07.027 kb8t9hx0 0.481969 Greene_2012, Gnirß_2014, Weissenhorn_2013 Ma_G_2004, Harada_2005
26 Repges-Illguth_1994 Differences in antigenicity of E2 in Semliki Forest virus particles and in infected cells Repges-Illguth, S.; Kaluza, G. 1994 1994-01-01 PMC N PMC7086913 7526823.0 10.1007/bf01310027 0ymcxcj3 0.470126 Jiang_2006
27 Laviada_1990 Expression of swine transmissible gastroenteritis virus envelope antigens on the surface of infected cells: epitopes externally exposed Laviada, M.D.; Videgain, S.P.; Moreno, L.; Alonso, F.; Enjuanes, L.; Escribano, J.M. 1990 1990-07-31 PMC N PMC7134118 1697441.0 10.1016/0168-1702(90)90051-c 51uflr94 0.449172 Compton_2014
28 Bardens_2010 Alix regulates egress of hepatitis B virus naked capsid particles in an ESCRT‐independent manner Bardens, Andreas; Döring, Tatjana; Stieler, Jens; Prange, Reinhild 2010 2010-12-28 PMC N PMC7162389 21129143.0 10.1111/j.1462-5822.2010.01557.x 3nqzlrty 0.445204 Greene_2012, Wodrich_2010
29 Castellana_2006 Solid supported lipid bilayers: From biophysical studies to sensor design Castellana, Edward T.; Cremer, Paul S. 2006 2006-11-15 PMC N PMC7114318 10.1016/j.surfrep.2006.06.001 th2qzcj0 0.444344
30 Pasquato_2013 The Lectin ERGIC-53 Goes Viral Pasquato, Antonella; Kunz, Stefan 2013 2013-11-13 PMC N PMC7104956 24237693.0 10.1016/j.chom.2013.10.014 2ge3lecy 0.436116 Greene_2012, Hobman_1993 Hobman_1993, UNKNOWN_1994
31 Louten_2016 Chapter 4 Virus Replication Louten, Jennifer 2016 2016-12-31 PMC N PMC7149683 10.1016/b978-0-12-800947-5.00004-1 q92fd2lo 0.422533 Roman_1985, Lenard_2008 Rott_1987, Dumas_2014
32 Zheng_2010 In Vitro and In Vivo Studies Identify Important Features of Dengue Virus pr-E Protein Interactions Zheng, Aihua; Umashankar, Mahadevaiah; Kielian, Margaret 2010 2010-10-21 COMM-USE N PMC2958806 20975939.0 10.1371/journal.ppat.1001157 m5ho3ccj 0.415004 Greene_2012
33 Stass_2019 Chapter Two Structures of enveloped virions determined by cryogenic electron microscopy and tomography Stass, Robert; Ng, Weng M.; Kim, Young Chan; Huiskonen, Juha T. 2019 2019-12-31 PMC N PMC7112279 31522708.0 10.1016/bs.aivir.2019.07.009 pjn8e3m1 0.404098 Weissenhorn_2013, Lenard_2008
34 Rüdiger_2016 Tubulins interact with porcine and human S proteins of the genus Alphacoronavirus and support successful assembly and release of infectious viral particles Rüdiger, Anna-Theresa; Mayrhofer, Peter; Ma-Lauer, Yue; Pohlentz, Gottfried; Müthing, Johannes; von Brunn, Albrecht; Schwegmann-Weßels, Christel 2016 2016-10-31 PMC N PMC7111311 27479465.0 10.1016/j.virol.2016.07.022 ztix0wsw 0.402993
35 Schley_2013 Arenavirus budding resulting from viral-protein-associated cell membrane curvature Schley, David; Whittaker, Robert J.; Neuman, Benjamin W. 2013 2013-09-06 COMM-USE N PMC3730687 23864502.0 10.1098/rsif.2013.0403 at79f8im 0.400738 Weissenhorn_2013, Welsch_2007, Hobman_1993
36 To_L_1992 Transmissible gastroenteritis coronavirus: surface antigens induced by virulent and attenuated strains To, L.T.; Bernard, S.; Bottreau, E. 1992 1992-12-31 PMC N PMC7135706 1329166.0 10.1016/s0923-2516(06)80112-3 mmgb7cxo 0.398549 Laviada_1990
37 Leung_2008 HIV-1 Assembly: Viral Glycoproteins Segregate Quantally to Lipid Rafts that Associate Individually with HIV-1 Capsids and Virions Leung, Kwanyee; Kim, Jae-Ouk; Ganesh, Lakshmanan; Kabat, Juraj; Schwartz, Owen; Nabel, Gary J. 2008 2008-05-15 None N PMC2998762 18474355.0 10.1016/j.chom.2008.04.004 fevxutto 0.397079 Compton_2014 Qi_M_2013, Porter_2010
38 Chen_2016 Membrane protein assembly: two cytoplasmic phosphorylated serine sites of Vpu from HIV-1 affect oligomerization Chen, Chin-Pei; Lin, Meng-Han; Chan, Ya-Ting; Chen, Li-Chyong; Ma, Che; Fischer, Wolfgang B. 2016 2016-06-29 COMM-USE N PMC4926278 27353136.0 10.1038/srep28866 pbb247lp 0.385752 Greene_2012
39 Johnson_2011 Mechanisms for Env Glycoprotein Acquisition by Retroviruses Johnson, Marc C. 2011 2011-03-01 PMC N PMC3048835 21247353.0 10.1089/aid.2010.0350 3p5bsk93 0.379076 Murakami_2012, Compton_2014 Regan_2013
40 Lemaitre_2005 Defining Drug Interactions with the Viral Membrane Protein Vpu from HIV-1 Lemaitre, V.; Kim, C. G.; Fischer, D.; Lam, Y. H.; Watts, A.; Fischer, W. B. 2005 2005-01-01 PMC N PMC7120575 10.1007/0-387-28146-0_14 eg35zyo6 0.369549 Greene_2012 Ma_G_2004, Guillén_2009
41 Patil_2010 Evidence that Gag facilitates HIV-1 envelope association both in GPI-enriched plasma membrane and detergent resistant membranes and facilitates envelope incorporation onto virions in primary CD4(+ )T cells Patil, Ajit; Gautam, Archana; Bhattacharya, Jayanta 2010 2010-01-08 COMM-USE N PMC2820015 20064199.0 10.1186/1743-422x-7-3 k58gx6sf 0.367505 Compton_2014, Greene_2012, Leung_2008 Qi_M_2013, Leung_2008, Porter_2010, Carter_2009
42 Tseng_2014 SARS-CoV envelope protein palmitoylation or nucleocapid association is not required for promoting virus-like particle production Tseng, Ying-Tzu; Wang, Shiu-Mei; Huang, Kuo-Jung; Wang, Chin-Tien 2014 2014-04-27 COMM-USE N PMC4014084 24766657.0 10.1186/1423-0127-21-34 mvpd977d 0.348233
43 Shtanko_2018 Autophagy-Associated Proteins Control Ebola Virus Internalization Into Host Cells Shtanko, Olena; Reyes, Ann N; Jackson, William T; Davey, Robert A 2018 2018-12-15 NONCOMM N PMC6249560 29947774.0 10.1093/infdis/jiy294 bynpfepe 0.346985 Greene_2012
44 Simons_1984 Semliki Forest Virus: A Probe for Membrane Traffic in the Animal Cell Simons, Kai; Warren, Graham 1984 1984-12-31 PMC N 6382965.0 10.1016/s0065-3233(08)60296-x tjjxx0pk 0.340043 Roman_1985, Hobman_1993, Weissenhorn_2013
45 Veit_2012 Palmitoylation of virus proteins Veit, Michael 2012 2012-07-17 PMC N PMC7161805 22548323.0 10.1111/boc.201200006 sqtrsgvd 0.335586 Hobman_1993, Weissenhorn_2013, Greene_2012
46 Guo_H_2018 Kinetic analysis of the influenza A virus HA/NA balance reveals contribution of NA to virus-receptor binding and NA-dependent rolling on receptor-containing surfaces Guo, Hongbo; Rabouw, Huib; Slomp, Anne; Dai, Meiling; van der Vegt, Floor; van Lent, Jan W. M.; McBride, Ryan; Paulson, James C.; de Groot, Raoul J.; van Kuppeveld, Frank J. M.; de Vries, Erik; de Haan, Cornelis A. M. 2018 2018-08-13 COMM-USE N PMC6107293 30102740.0 10.1371/journal.ppat.1007233 bdw5ke4i 0.334820 Greene_2012 Sakai_2017
47 Sakai_2017 Influenza A virus hemagglutinin and neuraminidase act as novel motile machinery Sakai, Tatsuya; Nishimura, Shin I.; Naito, Tadasuke; Saito, Mineki 2017 2017-03-27 COMM-USE N PMC5366856 28344335.0 10.1038/srep45043 7a0v0wfm 0.332697 Fuller_1985, Compton_2014 Fuller_1985
48 Vahey_2019 Influenza A virus surface proteins are organized to help penetrate host mucus Vahey, Michael D; Fletcher, Daniel A 2019 2019-05-14 COMM-USE N PMC6516830 31084711.0 10.7554/elife.43764 bjtxf1y8 0.325843 Compton_2014, Roman_1985 Sakai_2017
49 Porter_2010 Class II Transactivator (CIITA) Enhances Cytoplasmic Processing of HIV-1 Pr55Gag Porter, Kristen A.; Kelley, Lauren N.; George, Annette; Harton, Jonathan A.; Duus, Karen M. 2010 2010-06-24 COMM-USE N PMC2892040 20585587.0 10.1371/journal.pone.0011304 2lz03oqb 0.310608 Greene_2012, Compton_2014 UNKNOWN_1994
50 Foster_2018 Inhibiting the Ins and Outs of HIV Replication: Cell-Intrinsic Antiretroviral Restrictions at the Plasma Membrane Foster, Toshana L.; Pickering, Suzanne; Neil, Stuart J. D. 2018 2018-01-04 COMM-USE N PMC5758531 29354117.0 10.3389/fimmu.2017.01853 bjb38t6o 0.306157 Compton_2014 Beitari_2019, Dumas_2014, Tartour_2014
51 Patterson_1976 Electron microscope observations on the entry of avian infectious bronchitis virus into susceptible cells Patterson, S.; Bingham, R. W. 1976 1976-01-01 PMC N PMC7086628 187152.0 10.1007/bf01348016 0hc469aq 0.305532 Mori_2011 Chasey_1976, Payne_1990