Topic 10 -- Abstracts with Biological Entities (English) - 75 Topics / Sub-Topic Model 29 - 15 Topics

cite ad title authors publish year publish time dataset abstract mentions covid pmcid pubmed id doi cord uid topic weight Similarity scispacy Similarity specter
1 Brunton_2019 TIM-1 serves as a receptor for Ebola virus in vivo, enhancing viremia and pathogenesis Brunton, Bethany; Rogers, Kai; Phillips, Elisabeth K.; Brouillette, Rachel B.; Bouls, Ruayda; Butler, Noah S.; Maury, Wendy 2019 2019-06-26 COMM-USE N PMC6615641 31242184.0 10.1371/journal.pntd.0006983 u40w5hog 0.978088 Compton_2014 Brunton_2018
2 Brunton_2018 TIM-1 Serves as a Nonredundant Receptor for Ebola Virus, Enhancing Viremia and Pathogenesis Bethany Brunton; Kai Rogers; Elisabeth K. Phillips; Rachel B. Brouillette; Ruayda Bouls; Noah S. Butler; Wendy Maury 2018 2018-11-08 BioRxiv N 10.1101/466102 mbctin6l 0.909314 Compton_2014 Brunton_2019
3 González-Hernández_2019 Calu-3 cells are largely resistant to entry driven by filovirus glycoproteins and the entry defect can be rescued by directed expression of DC-SIGN or cathepsin L González-Hernández, Mariana; Müller, Andreas; Hoenen, Thomas; Hoffmann, Markus; Pöhlmann, Stefan 2019 2019-06-30 PMC N PMC7112014 30999160.0 10.1016/j.virol.2019.03.020 hs5j8njy 0.833208 Compton_2014, Greene_2012, Gnirß_2014 Zapatero-Belinchón_2019, Martinez_2013
4 Abraham_2009 Host-Species Transferrin Receptor 1 Orthologs Are Cellular Receptors for Nonpathogenic New World Clade B Arenaviruses Abraham, Jonathan; Kwong, Jo Ann; Albariño, César G.; Lu, Jiajie G.; Radoshitzky, Sheli R.; Salazar-Bravo, Jorge; Farzan, Michael; Spiropoulou, Christina F.; Choe, Hyeryun 2009 2009-04-03 COMM-USE N PMC2658809 19343214.0 10.1371/journal.ppat.1000358 5twx9y5c 0.733047 Radoshitzky_2007
5 Radoshitzky_2011 Machupo Virus Glycoprotein Determinants for Human Transferrin Receptor 1 Binding and Cell Entry Radoshitzky, Sheli R.; Longobardi, Lindsay E.; Kuhn, Jens H.; Retterer, Cary; Dong, Lian; Clester, Jeremiah C.; Kota, Krishna; Carra, John; Bavari, Sina 2011 2011-07-07 COMM-USE N PMC3131282 21750710.0 10.1371/journal.pone.0021398 av8b8g8c 0.728750
6 Abraham_2010 Structural basis for receptor recognition by New World hemorrhagic fever arenaviruses Abraham, Jonathan; Corbett, Kevin D.; Farzan, Michael; Choe, Hyeryun; Harrison, Stephen C. 2010 2010-03-07 None N PMC2920743 20208545.0 10.1038/nsmb.1772 euxxibx0 0.727936
7 Dahlmann_2015 Analysis of Ebola Virus Entry Into Macrophages Dahlmann, Franziska; Biedenkopf, Nadine; Babler, Anne; Jahnen-Dechent, Willi; Karsten, Christina B.; Gnirß, Kerstin; Schneider, Heike; Wrensch, Florian; O'Callaghan, Christopher A.; Bertram, Stephanie; Herrler, Georg; Becker, Stephan; Pöhlmann, Stefan; Hofmann-Winkler, Heike 2015 2015-10-01 NONCOMM N PMC4564540 25877552.0 10.1093/infdis/jiv140 7vjdlt1v 0.713038 Greene_2012, Compton_2014 Brunton_2018, Brunton_2019
8 Ndungo_2016 A Single Residue in Ebola Virus Receptor NPC1 Influences Cellular Host Range in Reptiles Ndungo, Esther; Herbert, Andrew S.; Raaben, Matthijs; Obernosterer, Gregor; Biswas, Rohan; Miller, Emily Happy; Wirchnianski, Ariel S.; Carette, Jan E.; Brummelkamp, Thijn R.; Whelan, Sean P.; Dye, John M.; Chandran, Kartik 2016 2016-03-30 COMM-USE N PMC4894689 27303731.0 10.1128/msphere.00007-16 yh7x7w2q 0.643535 Compton_2014, Gnirß_2014 Takada_2012, Wang_2016
9 Hoffmann_2016 The Glycoproteins of All Filovirus Species Use the Same Host Factors for Entry into Bat and Human Cells but Entry Efficiency Is Species Dependent Hoffmann, Markus; González Hernández, Mariana; Berger, Elisabeth; Marzi, Andrea; Pöhlmann, Stefan 2016 2016-02-22 COMM-USE N PMC4762945 26901159.0 10.1371/journal.pone.0149651 146cwh6y 0.631947 Takada_2012
10 Radoshitzky_2007 Transferrin receptor 1 is a cellular receptor for New World haemorrhagic fever arenaviruses Radoshitzky, Sheli R.; Abraham, Jonathan; Spiropoulou, Christina F.; Kuhn, Jens H.; Nguyen, Dan; Li, Wenhui; Nagel, Jane; Schmidt, Paul J.; Nunberg, Jack H.; Andrews, Nancy C.; Farzan, Michael; Choe, Hyeryun 2007 2007-02-07 None N PMC3197705 17287727.0 10.1038/nature05539 nu77ay9e 0.618996 Mathieu_2015
11 Marzi_2012 Cathepsin B & L Are Not Required for Ebola Virus Replication Marzi, Andrea; Reinheckel, Thomas; Feldmann, Heinz 2012 2012-12-06 COMM-USE N PMC3516577 23236527.0 10.1371/journal.pntd.0001923 jjpi5gjm 0.616976 Compton_2014
12 Hoffmann_2019 Analysis of Resistance of Ebola Virus Glycoprotein-Driven Entry Against MDL28170, An Inhibitor of Cysteine Cathepsins Hoffmann, Markus; Kaufmann, Svenja Victoria; Fischer, Carina; Maurer, Wiebke; Moldenhauer, Anna-Sophie; Pöhlmann, Stefan 2019 2019-10-15 COMM-USE N PMC6963435 31618932.0 10.3390/pathogens8040192 hylxi96f 0.610547 Compton_2014, Gnirß_2014, Yu_J_2015
13 Gnirß_2012 Cathepsins B and L activate Ebola but not Marburg virus glycoproteins for efficient entry into cell lines and macrophages independent of TMPRSS2 expression Gnirß, Kerstin; Kühl, Annika; Karsten, Christina; Glowacka, Ilona; Bertram, Stephanie; Kaup, Franziska; Hofmann, Heike; Pöhlmann, Stefan 2012 2012-03-01 PMC N PMC7111950 22222211.0 10.1016/j.virol.2011.11.031 acw0ymno 0.579773 Compton_2014, Pager_2006, Greene_2012 Hoffmann_2019
14 Flint_2019 A genome-wide CRISPR screen identifies N-acetylglucosamine-1-phosphate transferase as a potential antiviral target for Ebola virus Flint, Mike; Chatterjee, Payel; Lin, David L.; McMullan, Laura K.; Shrivastava-Ranjan, Punya; Bergeron, Éric; Lo, Michael K.; Welch, Stephen R.; Nichol, Stuart T.; Tai, Andrew W.; Spiropoulou, Christina F. 2019 2019-01-17 None N PMC6336797 30655525.0 10.1038/s41467-018-08135-4 7f69swqy 0.570555 Compton_2014
15 Rogers_2019 IL-4/IL-13 polarization of macrophages enhances Ebola virus glycoprotein-dependent infection Rogers, Kai J.; Brunton, Bethany; Mallinger, Laura; Bohan, Dana; Sevcik, Kristina M.; Chen, Jing; Ruggio, Natalie; Maury, Wendy 2019 2019-12-11 COMM-USE N PMC6905523 31825972.0 10.1371/journal.pntd.0007819 66lqic50 0.548766 Compton_2014
16 Kennedy_2020 Phosphatidylserine’s role in Ebola’s inflammatory cytokine storm and hemorrhagic consumptive coagulopathy and the therapeutic potential of annexin V Kennedy, James R. 2020 2020-02-29 PMC N PMC7126469 31731057.0 10.1016/j.mehy.2019.109462 egw7bvzf 0.548201
17 Haines_2012 Chinese hamster ovary cell lines selected for resistance to ebolavirus glycoprotein mediated infection are defective for NPC1 expression Haines, Kathleen M.; Vande Burgt, Nathan H.; Francica, Joseph R.; Kaletsky, Rachel L.; Bates, Paul 2012 2012-10-10 PMC N PMC3402687 22726751.0 10.1016/j.virol.2012.05.018 ar6wyv3u 0.525007 Compton_2014 Henmi_2005
18 Ma_G_2004 Secretory Leukocyte Protease Inhibitor Binds to Annexin II, a Cofactor for Macrophage HIV-1 Infection Ma, Ge; Greenwell-Wild, Teresa; Lei, Kejian; Jin, Wenwen; Swisher, Jennifer; Hardegen, Neil; Wild, Carl T.; Wahl, Sharon M. 2004 2004-11-15 NONCOMM N PMC2211913 15545357.0 10.1084/jem.20041115 rlabxfss 0.491956 Greene_2012, Compton_2014 Kwong_2013, Harada_2005
19 Kondratowicz_2012 AMP-Activated Protein Kinase Is Required for the Macropinocytic Internalization of Ebolavirus Kondratowicz, Andrew S.; Hunt, Catherine L.; Davey, Robert A.; Cherry, Sara; Maury, Wendy J. 2012 2012-10-31 None N PMC3554099 23115293.0 10.1128/jvi.01634-12 uurjbto0 0.485190 Compton_2014, Greene_2012
20 Bornholdt_2016 Host-Primed Ebola Virus GP Exposes a Hydrophobic NPC1 Receptor-Binding Pocket, Revealing a Target for Broadly Neutralizing Antibodies Bornholdt, Zachary A.; Ndungo, Esther; Fusco, Marnie L.; Bale, Shridhar; Flyak, Andrew I.; Crowe, James E.; Chandran, Kartik; Saphire, Erica Ollmann 2016 2016-02-23 NONCOMM N PMC4791852 26908579.0 10.1128/mbio.02154-15 nbej2s0b 0.470614 Greene_2012, Gnirß_2014 Wang_2016
21 Salata_2015 Amiodarone and metabolite MDEA inhibit Ebola virus infection by interfering with the viral entry process Salata, Cristiano; Baritussio, Aldo; Munegato, Denis; Calistri, Arianna; Ha, Huy Riem; Bigler, Laurent; Fabris, Fabrizio; Parolin, Cristina; Palù, Giorgio; Mirazimi, Ali 2015 2015-05-01 PMC N PMC7108539 25933611.0 10.1093/femspd/ftv032 zm2wfnrv 0.468065 Compton_2014
22 Gehring_2014 The clinically approved drugs amiodarone, dronedarone and verapamil inhibit filovirus cell entry Gehring, Gerrit; Rohrmann, Katrin; Atenchong, Nkacheh; Mittler, Eva; Becker, Stephan; Dahlmann, Franziska; Pöhlmann, Stefan; Vondran, Florian W. R.; David, Sascha; Manns, Michael P.; Ciesek, Sandra; von Hahn, Thomas 2014 2014-08-01 PMC N PMC7110251 24710028.0 10.1093/jac/dku091 tc1qo2k0 0.467328 Compton_2014
23 Hofmann-Winkler_2015 Comparative Analysis of Host Cell Entry of Ebola Virus From Sierra Leone, 2014, and Zaire, 1976 Hofmann-Winkler, Heike; Gnirß, Kerstin; Wrensch, Florian; Pöhlmann, Stefan 2015 2015-10-01 NONCOMM N PMC4564534 25840443.0 10.1093/infdis/jiv101 njzyu4mv 0.463659 Compton_2014
24 Jemielity_2013 TIM-family Proteins Promote Infection of Multiple Enveloped Viruses through Virion-associated Phosphatidylserine Jemielity, Stephanie; Wang, Jinyize J.; Chan, Ying Kai; Ahmed, Asim A.; Li, Wenhui; Monahan, Sheena; Bu, Xia; Farzan, Michael; Freeman, Gordon J.; Umetsu, Dale T.; DeKruyff, Rosemarie H.; Choe, Hyeryun 2013 2013-03-28 COMM-USE N PMC3610696 23555248.0 10.1371/journal.ppat.1003232 0fais1pz 0.452051 Brunton_2018, Brunton_2019
25 Lee_J_2009 Ebolavirus glycoprotein structure and mechanism of entry Lee, Jeffrey E; Saphire, Erica Ollmann 2009 2009-11-01 PMC N PMC2829775 20198110.0 10.2217/fvl.09.56 59d6urx4 0.447608
26 Hofmann-Winkler_2012 Host Cell Factors in Filovirus Entry: Novel Players, New Insights Hofmann-Winkler, Heike; Kaup, Franziska; Pöhlmann, Stefan 2012 2012-11-26 COMM-USE N PMC3528269 23342362.0 10.3390/v4123336 t5w8pexf 0.420747 Compton_2014, Greene_2012 Takada_2012, Happy_Miller_2012, Wang_2016
27 Plegge_2019 Inhibitors of signal peptide peptidase and subtilisin/kexin-isozyme 1 inhibit Ebola virus glycoprotein-driven cell entry by interfering with activity and cellular localization of endosomal cathepsins Plegge, Teresa; Spiegel, Martin; Krüger, Nadine; Nehlmeier, Inga; Winkler, Michael; González Hernández, Mariana; Pöhlmann, Stefan 2019 2019-04-11 COMM-USE N PMC6459477 30973897.0 10.1371/journal.pone.0214968 om91r0jm 0.405909 Compton_2014, Greene_2012
28 Zapatero-Belinchón_2019 Characterization of the Filovirus-Resistant Cell Line SH-SY5Y Reveals Redundant Role of Cell Surface Entry Factors Zapatero-Belinchón, Francisco J.; Dietzel, Erik; Dolnik, Olga; Döhner, Katinka; Costa, Rui; Hertel, Barbara; Veselkova, Barbora; Kirui, Jared; Klintworth, Anneke; Manns, Michael P.; Pöhlmann, Stefan; Pietschmann, Thomas; Krey, Thomas; Ciesek, Sandra; Gerold, Gisa; Sodeik, Beate; Becker, Stephan; von Hahn, Thomas 2019 2019-03-19 COMM-USE N PMC6466046 30893855.0 10.3390/v11030275 b7xjlqg3 0.404183 Greene_2012, Compton_2014 Hofmann-Winkler_2012, Takada_2012, Gnirß_2014
29 Wang_2016 Ebola Viral Glycoprotein Bound to Its Endosomal Receptor Niemann-Pick C1 Wang, Han; Shi, Yi; Song, Jian; Qi, Jianxun; Lu, Guangwen; Yan, Jinghua; Gao, George F. 2016 2016-01-14 None N PMC7111281 26771495.0 10.1016/j.cell.2015.12.044 9febe79d 0.402484 Greene_2012, Wodrich_2010, Gnirß_2014
30 Takada_2012 Filovirus Tropism: Cellular Molecules for Viral Entry Takada, Ayato 2012 2012-02-06 NONCOMM N PMC3277274 22363323.0 10.3389/fmicb.2012.00034 0j3efvfe 0.394051 Compton_2014 Hofmann-Winkler_2012
31 Markosyan_2016 Induction of Cell-Cell Fusion by Ebola Virus Glycoprotein: Low pH Is Not a Trigger Markosyan, Ruben M.; Miao, Chunhui; Zheng, Yi-Min; Melikyan, Gregory B.; Liu, Shan-Lu; Cohen, Fredric S. 2016 2016-01-05 COMM-USE N PMC4711667 26730950.0 10.1371/journal.ppat.1005373 7ycgd0h7 0.387582 Greene_2012, Compton_2014, Gnirß_2014, Wodrich_2010 Spence_2016
32 Demogines_2013 Dual Host-Virus Arms Races Shape an Essential Housekeeping Protein Demogines, Ann; Abraham, Jonathan; Choe, Hyeryun; Farzan, Michael; Sawyer, Sara L. 2013 2013-05-28 None N PMC3665890 23723737.0 10.1371/journal.pbio.1001571 v39rtc3p 0.372945
33 Fénéant_2019 An exploration of conditions proposed to trigger the Ebola virus glycoprotein for fusion Fénéant, Lucie; Szymańska-de Wijs, Katarzyna M.; Nelson, Elizabeth A.; White, Judith M. 2019 2019-07-05 COMM-USE N PMC6611598 31276481.0 10.1371/journal.pone.0219312 6v6336wa 0.370892 Greene_2012, Wodrich_2010 Wang_2016
34 Aman_2016 Chasing Ebola through the Endosomal Labyrinth Aman, M. Javad 2016 2016-03-22 COMM-USE N PMC4807365 27006455.0 10.1128/mbio.00346-16 45id3yyr 0.359660 Greene_2012, Weissenhorn_2013 Spence_2016, Walker_2016, Regan_2013, Wang_2018
35 Jiang_2009 The Role of the Charged Residues of the GP2 Helical Regions in Ebola Entry() Jiang, Haiqing; Wang, Jizhen; Manicassamy, Balaji; Manicassamy, Santhakumar; Caffrey, Michael; Rong, Lijun 2009 2009-04-23 PMC N PMC3516429 23227032.0 qwzigb15 0.357789 Gnirß_2014
36 Shtanko_2018 Autophagy-Associated Proteins Control Ebola Virus Internalization Into Host Cells Shtanko, Olena; Reyes, Ann N; Jackson, William T; Davey, Robert A 2018 2018-12-15 NONCOMM N PMC6249560 29947774.0 10.1093/infdis/jiy294 bynpfepe 0.324943 Greene_2012
37 Spence_2016 Direct Visualization of Ebola Virus Fusion Triggering in the Endocytic Pathway Spence, Jennifer S.; Krause, Tyler B.; Mittler, Eva; Jangra, Rohit K.; Chandran, Kartik 2016 2016-02-09 NONCOMM N PMC4752599 26861015.0 10.1128/mbio.01857-15 tnaizwxo 0.323270 Greene_2012, Compton_2014, Weissenhorn_2013 Wang_2016
38 Welsch_2010 Electron Tomography Reveals the Steps in Filovirus Budding Welsch, Sonja; Kolesnikova, Larissa; Krähling, Verena; Riches, James D.; Becker, Stephan; Briggs, John A. G. 2010 2010-04-29 COMM-USE N PMC2861712 20442788.0 10.1371/journal.ppat.1000875 lfvso15k 0.318424 Weissenhorn_2013 Regan_2013
39 Pasquato_2013 The Lectin ERGIC-53 Goes Viral Pasquato, Antonella; Kunz, Stefan 2013 2013-11-13 PMC N PMC7104956 24237693.0 10.1016/j.chom.2013.10.014 2ge3lecy 0.314625 Greene_2012, Hobman_1993 Hobman_1993, UNKNOWN_1994