Topic 13 -- Abstracts with Biological Entities (English) - 75 Topics / Sub-Topic Model 29 - 15 Topics

cite ad title authors publish year publish time dataset abstract mentions covid pmcid pubmed id doi cord uid topic weight Similarity scispacy Similarity specter
1 Takano_2019 Endocytic Pathway of Feline Coronavirus for Cell Entry: Differences in Serotype-Dependent Viral Entry Pathway Takano, Tomomi; Wakayama, Yumeho; Doki, Tomoyoshi 2019 2019-12-16 COMM-USE N PMC6963708 31888266.0 10.3390/pathogens8040300 reaw7lp6 0.735212 Compton_2014
2 Piccoli_2011 Amiodarone impairs trafficking through late endosomes inducing a Niemann-Pick C-like phenotype Piccoli, Elena; Nadai, Matteo; Caretta, Carla Mucignat; Bergonzini, Valeria; Del Vecchio, Claudia; Ha, Huy Riem; Bigler, Laurent; Dal Zoppo, Daniele; Faggin, Elisabetta; Pettenazzo, Andrea; Orlando, Rocco; Salata, Cristiano; Calistri, Arianna; Palù, Giorgio; Baritussio, Aldo 2011 2011-11-01 PMC N PMC7092840 21878321.0 10.1016/j.bcp.2011.07.090 4ic7amph 0.709666 Greene_2012, Amini-Bavil-Olyaee_2013 Jia_R_2014
3 Steinauer_2018 HOPS-dependent endosomal fusion required for efficient cytosolic delivery of therapeutic peptides and small proteins Angela Steinauer; Jonathan R. LaRochelle; Rebecca Wissner; Samuel Berry; Alanna Schepartz 2018 2018-07-23 BioRxiv N 10.1101/374926 zswddzm0 0.629659 Weissenhorn_2013, Greene_2012 Weis_2015, Park_2017, Žurga_2017
4 Lehto_2013 Cellular trafficking determines the exon skipping activity of Pip6a-PMO in mdx skeletal and cardiac muscle cells Lehto, Taavi; Castillo Alvarez, Alejandra; Gauck, Sarah; Gait, Michael J.; Coursindel, Thibault; Wood, Matthew J. A.; Lebleu, Bernard; Boisguerin, Prisca 2013 2013-12-22 COMM-USE N PMC3950666 24366877.0 10.1093/nar/gkt1220 ur76wh1x 0.625947 Greene_2012
5 Van_Hamme_2011 Intriguing interplay between feline infectious peritonitis virus and its receptors during entry in primary feline monocytes Van Hamme, Evelien; Desmarets, Lowiese; Dewerchin, Hannah L.; Nauwynck, Hans J. 2011 2011-09-30 PMC N PMC7114467 21600938.0 10.1016/j.virusres.2011.04.031 z6ijli9c 0.612767 Compton_2014, Greene_2012
6 Yoshii_2009 Cathepsin L is required for ecotropic murine leukemia virus infection in NIH3T3 cells Yoshii, Hiroaki; Kamiyama, Haruka; Minematsu, Kazuo; Goto, Kensuke; Mizota, Tsutomu; Oishi, Kazunori; Katunuma, Nobuhiko; Yamamoto, Naoki; Kubo, Yoshinao 2009 2009-11-25 PMC N PMC7111982 19781728.0 10.1016/j.virol.2009.08.045 zt4n10w4 0.607770 Pager_2006, Zhao_2013, Yoshii_2011
7 Greene_2012 The Ubiquitin/Proteasome System Mediates Entry and Endosomal Trafficking of Kaposi's Sarcoma-Associated Herpesvirus in Endothelial Cells Greene, Whitney; Zhang, Wei; He, Meilan; Witt, Colleen; Ye, Fengchun; Gao, Shou-Jiang 2012 2012-05-17 COMM-USE N PMC3355089 22615563.0 10.1371/journal.ppat.1002703 v8l5cj5h 0.571881 Wodrich_2010 Walker_2016, UNKNOWN_1994
8 Díaz-Salinas_2018 Most rotavirus strains require the cation-independent mannose-6-phosphate receptor, sortilin-1, and cathepsins to enter cells Díaz-Salinas, Marco A.; Casorla, Luis A.; López, Tomás; López, Susana; Arias, Carlos F. 2018 2018-02-02 PMC N 29275103.0 10.1016/j.virusres.2017.12.002 knz48kek 0.565152 Greene_2012, Compton_2014, Wodrich_2010
9 Lang_2020 Acid ceramidase of macrophages traps herpes simplex virus in multivesicular bodies and protects from severe disease Lang, Judith; Bohn, Patrick; Bhat, Hilal; Jastrow, Holger; Walkenfort, Bernd; Cansiz, Feyza; Fink, Julian; Bauer, Michael; Olszewski, Dominik; Ramos-Nascimento, Ana; Duhan, Vikas; Friedrich, Sarah-Kim; Becker, Katrin Anne; Krawczyk, Adalbert; Edwards, Michael J.; Burchert, Andreas; Huber, Magdalena; Friebus-Kardash, Justa; Göthert, Joachim R.; Hardt, Cornelia; Probst, Hans Christian; Schumacher, Fabian; Köhrer, Karl; Kleuser, Burkhard; Babiychuk, Eduard B.; Sodeik, Beate; Seibel, Jürgen; Greber, Urs F.; Lang, Philipp A.; Gulbins, Erich; Lang, Karl S. 2020 2020-03-12 None N PMC7067866 32165633.0 10.1038/s41467-020-15072-8 m9vp1cdc 0.563928 Greene_2012, Compton_2014, Amini-Bavil-Olyaee_2013
10 Regan_2008 Differential role for low pH and cathepsin-mediated cleavage of the viral spike protein during entry of serotype II feline coronaviruses Regan, Andrew D.; Shraybman, Renata; Cohen, Rebecca D.; Whittaker, Gary R. 2008 2008-12-10 None N PMC2588466 18606506.0 10.1016/j.vetmic.2008.05.019 gm95z3pj 0.540401 Compton_2014
11 UNKNOWN_1995 Oligomerized transferrin receptors are selectively retained by a lumenal sorting signal in a long-lived endocytic recycling compartment None 1995 1995-06-02 NONCOMM N PMC2291173 7790351.0 9tdbygve 0.528431 Greene_2012 UNKNOWN_1994
12 Agbeci_2013 Contribution of Host Intracellular Transport Machineries to Intercellular Movement of Turnip Mosaic Virus Agbeci, Maxime; Grangeon, Romain; Nelson, Richard S.; Zheng, Huanquan; Laliberté, Jean-François 2013 2013-10-03 COMM-USE N PMC3789768 24098128.0 10.1371/journal.ppat.1003683 9hnal9ad 0.514431 Greene_2012, Compton_2014 Krzyzaniak_2013
13 Ziegler_2019 NEDD4 family ubiquitin ligases associate with LCMV Z’s PPXY domain and are required for virus budding, but not via direct ubiquitination of Z Ziegler, Christopher M.; Dang, Loan; Eisenhauer, Philip; Kelly, Jamie A.; King, Benjamin R.; Klaus, Joseph P.; Manuelyan, Inessa; Mattice, Ethan B.; Shirley, David J.; Weir, Marion E.; Bruce, Emily A.; Ballif, Bryan A.; Botten, Jason 2019 2019-11-11 COMM-USE N PMC6874086 31710650.0 10.1371/journal.ppat.1008100 yjutjt8t 0.476242 Greene_2012, Wodrich_2010
14 Ziegler_2016 The Lymphocytic Choriomeningitis Virus Matrix Protein PPXY Late Domain Drives the Production of Defective Interfering Particles Ziegler, Christopher M.; Eisenhauer, Philip; Bruce, Emily A.; Weir, Marion E.; King, Benjamin R.; Klaus, Joseph P.; Krementsov, Dimitry N.; Shirley, David J.; Ballif, Bryan A.; Botten, Jason 2016 2016-03-24 COMM-USE N PMC4806877 27010636.0 10.1371/journal.ppat.1005501 m4k20i7g 0.462105 Greene_2012, Wodrich_2010
15 Walker_2016 Subcellular fractionation method to study endosomal trafficking of Kaposi’s sarcoma-associated herpesvirus Walker, Lia R.; Hussein, Hosni A. M.; Akula, Shaw M. 2016 2016-01-15 COMM-USE N PMC4714431 26779333.0 10.1186/s13578-015-0066-2 5xz5nzzw 0.458833 Greene_2012, Weissenhorn_2013, Hobman_1993 Krzyzaniak_2013, Wang_2018
16 Owczarek_2019 Zika virus: mapping and reprogramming the entry Owczarek, Katarzyna; Chykunova, Yuliya; Jassoy, Christian; Maksym, Beata; Rajfur, Zenon; Pyrc, Krzysztof 2019 2019-05-03 COMM-USE N PMC6500006 31053158.0 10.1186/s12964-019-0349-z fnojbipn 0.427290 Greene_2012, Weissenhorn_2013 Walker_2016
17 Wodrich_2010 A Capsid-Encoded PPxY-Motif Facilitates Adenovirus Entry Wodrich, Harald; Henaff, Daniel; Jammart, Baptist; Segura-Morales, Carolina; Seelmeir, Sigrid; Coux, Olivier; Ruzsics, Zsolt; Wiethoff, Christopher M.; Kremer, Eric J. 2010 2010-03-19 COMM-USE N PMC2841620 20333243.0 10.1371/journal.ppat.1000808 1mjmttec 0.406635 Greene_2012
18 Dabydeen_2009 The role of NH(4)Cl and cysteine proteases in Human Papillomavirus type 16 infection Dabydeen, Sarah A; Meneses, Patricio I 2009 2009-07-20 COMM-USE N PMC2718874 19619315.0 10.1186/1743-422x-6-109 8rsix8rc 0.399057 Greene_2012, Compton_2014 Ashfaq_2011
19 Lozach_2010 Entry of Bunyaviruses into Mammalian Cells Lozach, Pierre-Yves; Mancini, Roberta; Bitto, David; Meier, Roger; Oestereich, Lisa; Överby, Anna K.; Pettersson, Ralf F.; Helenius, Ari 2010 2010-06-17 PMC N 10.1016/j.chom.2010.05.007 6foykw0p 0.394866 Greene_2012, Compton_2014, Weissenhorn_2013, Hobman_1993
20 Danthi_2010 From Touchdown to Transcription: The Reovirus Cell Entry Pathway Danthi, Pranav; Guglielmi, Kristen M.; Kirchner, Eva; Mainou, Bernardo; Stehle, Thilo; Dermody, Terence S. 2010 2010-01-01 None N PMC4714703 20397070.0 10.1007/82_2010_32 az590wsw 0.386800 Greene_2012, Wodrich_2010, Compton_2014
21 Nelson_2017 The phosphatidylinositol-3-phosphate 5-kinase inhibitor apilimod blocks filoviral entry and infection Nelson, Elizabeth A.; Dyall, Julie; Hoenen, Thomas; Barnes, Alyson B.; Zhou, Huanying; Liang, Janie Y.; Michelotti, Julia; Dewey, William H.; DeWald, Lisa Evans; Bennett, Richard S.; Morris, Patrick J.; Guha, Rajarshi; Klumpp-Thomas, Carleen; McKnight, Crystal; Chen, Yu-Chi; Xu, Xin; Wang, Amy; Hughes, Emma; Martin, Scott; Thomas, Craig; Jahrling, Peter B.; Hensley, Lisa E.; Olinger, Gene G.; White, Judith M. 2017 2017-04-12 COMM-USE N PMC5402990 28403145.0 10.1371/journal.pntd.0005540 odl5p8i4 0.374940 Greene_2012, Compton_2014
22 Rivera-Serrano_2019 Cellular entry and uncoating of naked and quasi-enveloped human hepatoviruses Rivera-Serrano, Efraín E; González-López, Olga; Das, Anshuman; Lemon, Stanley M 2019 2019-02-25 COMM-USE N PMC6422491 30801249.0 10.7554/elife.43983 ymav4c6w 0.373709 Greene_2012, Compton_2014, Weissenhorn_2013, Lenard_2008 Regan_2013
23 Hussein_2017 miRNA-36 inhibits KSHV, EBV, HSV-2 infection of cells via stifling expression of interferon induced transmembrane protein 1 (IFITM1) Hussein, Hosni A. M.; Akula, Shaw M. 2017 2017-12-21 COMM-USE N PMC5740118 29269892.0 10.1038/s41598-017-18225-w a7whyds8 0.370207 Greene_2012
24 Lagache_2012 Modeling the Step of Endosomal Escape during Cell Infection by a Nonenveloped Virus Lagache, Thibault; Danos, Olivier; Holcman, David 2012 2012-03-01 PMC N PMC3302482 22404920.0 10.1016/j.bpj.2011.12.037 f1hcbsbb 0.360341 Weissenhorn_2013, Hobman_1993 White_2016, Regan_2013
25 Qi_C_2014 Analysis of interactions between SNARE proteins using imaging ellipsometer coupled with microfluidic array Qi, Cai; Zhang, Hong; Liu, Li; Yang, Yinke; Kang, Tengfei; Hao, Wenxin; Jin, Gang; Jiang, Taijiao 2014 2014-06-18 NONCOMM N PMC4061542 24938428.0 10.1038/srep05341 c6qo1pju 0.344193 Weissenhorn_2013
26 Pager_2006 A mature and fusogenic form of the Nipah virus fusion protein requires proteolytic processing by cathepsin L Pager, Cara Theresia; Craft, Willie Warren; Patch, Jared; Dutch, Rebecca Ellis 2006 2006-03-15 PMC N PMC7111743 16460775.0 10.1016/j.virol.2006.01.007 xvmpmljp 0.323965 Diederich_2008, Greene_2012 Weis_2015, Peisajovich_2000
27 Friedrich_2011 A Functional Role for ADAM10 in Human Immunodeficiency Virus Type-1 Replication Friedrich, Brian M; Murray, James L; Li, Guangyu; Sheng, Jinsong; Hodge, Thomas W; Rubin, Donald H; O'Brien, William A; Ferguson, Monique R 2011 2011-05-11 COMM-USE N PMC3118345 21569301.0 10.1186/1742-4690-8-32 gfccstoz 0.311902 Greene_2012
28 Dye_C_2007 Type I feline coronavirus spike glycoprotein fails to recognize aminopeptidase N as a functional receptor on feline cell lines Dye, Charlotte; Temperton, Nigel; Siddell, Stuart G. 2007 2007-06-23 COMM-USE N PMC2584236 17485536.0 10.1099/vir.0.82666-0 f6ikfoe8 0.309627 Compton_2014
29 Alain_2007 Proteolytic Disassembly Is a Critical Determinant for Reovirus Oncolysis Alain, Tommy; Kim, Tom SY; Lun, XueQing; Liacini, Adelhamid; Schiff, Leslie A; Senger, Donna L; Forsyth, Peter A 2007 2007-08-31 PMC N 17519890.0 10.1038/sj.mt.6300207 ye1b51q3 0.305208 Compton_2014, Greene_2012