Topic 07 -- Abstracts with Biological Entities (English) - 75 Topics / Sub-Topic Model 08 - 15 Topics

cite ad title authors publish year publish time dataset abstract mentions covid pmcid pubmed id doi cord uid topic weight Similarity scispacy Similarity specter
1 Tian_2016 The similarity analysis of financial stocks based on information clustering Tian, Qiang; Shang, Pengjian; Feng, Guochen 2016 2016-05-26 PMC N PMC7088863 10.1007/s11071-016-2851-9 a2m46j0z 0.886806 Argyroudis_2019
2 Zhao_2013 Estimation with Right-Censored Observations Under A Semi-Markov Model Zhao, Lihui; Hu, X. Joan 2013 2013-03-01 PMC N PMC3713855 23874060.0 10.1002/cjs.11176 b25mi0sp 0.885701 Bocharov_2018, Chowell_2017 Soubeyrand_2007, Black_2013, Hirose_2007, Roques_2020
3 So_M_2008 A multivariate threshold stochastic volatility model So, Mike K.P.; Choi, C.Y. 2008 2008-12-01 PMC N PMC7127604 10.1016/j.matcom.2007.12.003 8k22red9 0.843205 Chowell_2017, Bocharov_2018, Bifolchi_2013, Zhao_2013 Liao_2013
4 Wan_W_2011 Bayesian analysis of robust Poisson geometric process model using heavy-tailed distributions Wan, Wai-Yin; Chan, Jennifer So-Kuen 2011 2011-01-01 PMC N PMC7114253 10.1016/j.csda.2010.06.011 hoa39sx2 0.811831 Bifolchi_2013, Chowell_2017, Lloyd_2009, Zhao_2013 Zhao_2013, Chowell_2017, Lloyd_2009
5 Zou_X_2014 Optimal harvesting for a stochastic regime-switching logistic diffusion system with jumps Zou, Xiaoling; Wang, Ke 2014 2014-08-31 PMC N 10.1016/j.nahs.2014.01.001 8moz4g71 0.765850 Bocharov_2018, Chowell_2017, Bifolchi_2013 Guo_W_2018, Chen_2018, Cazelles_2018, Lan_G_2019
6 Pan_J_2008 Estimation and tests for power-transformed and threshold GARCH models Pan, Jiazhu; Wang, Hui; Tong, Howell 2008 2008-01-31 PMC N PMC7116990 10.1016/j.jeconom.2007.06.004 hi5afmbw 0.751901 Höhle_2007, Zhao_2013, Pekalp_2019, Bifolchi_2013 Zhao_2013, Hirose_2007, Soubeyrand_2007
7 Xiong_2016 Weighted multifractal cross-correlation analysis based on Shannon entropy Xiong, Hui; Shang, Pengjian 2016 2016-01-31 PMC N PMC7128505 10.1016/j.cnsns.2015.06.029 geiq55mq 0.742341 Zhao_2013 Tian_2016, Argyroudis_2019, Tao_Y_2020, Pan_J_2008
8 Soubeyrand_2007 Model-based estimation of the link between the daily survival probability and a time-varying covariate, application to mosquitofish survival data Soubeyrand, Samuel; Beaudouin, Rémy; Desassis, Nicolas; Monod, Gilles 2007 2007-12-31 PMC N PMC7125893 17706252.0 10.1016/j.mbs.2007.06.005 cok7vbmg 0.721478 Bifolchi_2013, Zhao_2013, Bocharov_2018, Chowell_2017 Safi_2011, Black_2013, Heffernan_2006, Roques_2020
9 Getz_2017 Modeling Epidemics: A Primer and Numerus Software Implementation Wayne M. Getz; Richard Salter; Oliver Muellerklein; Hyun S. Yoon; Krti Tallam 2017 2017-09-22 BioRxiv N 10.1101/191601 6riyqn4k 0.687620 Bifolchi_2013, Chowell_2017, Kenah_2007, Simon_2010 Vincenot_2011, Feng_2018, Clancy_2015, Roy_M_2006
10 Höhle_2007 RLadyBug—An R package for stochastic epidemic models Höhle, Michael; Feldmann, Ulrike 2007 2007-10-15 PMC N PMC7114252 10.1016/j.csda.2006.11.016 63wqn2fg 0.651087 Bifolchi_2013, Bocharov_2018, Chowell_2017 Zimmer_2017, Black_2013
11 White_2007 Modeling epidemics using cellular automata White, S. Hoya; del Rey, A. Martín; Sánchez, G. Rodríguez 2007 2007-03-01 PMC N PMC7127728 10.1016/j.amc.2006.06.126 wljou004 0.630193 Bocharov_2018, Li_C_2018 Guo_W_2018, Fan_K_2020, Sherborne_2015, Bin_S_2019
12 Bliznashki_2020 A Bayesian Logistic Growth Model for the Spread of COVID-19 in New York Svetoslav Bliznashki 2020 2020-04-07 BioRxiv N 10.1101/2020.04.05.20054577 lhv83zac 0.622302 Bifolchi_2013, Chowell_2017, Zhao_2013, Lloyd_2009 Chong_2020, Smeets_2020, Black_2013, Safi_2011
13 Argyroudis_2019 Spillover effects of Great Recession on Hong-Kong’s Real Estate Market: An analysis based on Causality Plane and Tsallis Curves of Complexity–Entropy Argyroudis, George S.; Siokis, Fotios M. 2019 2019-06-15 PMC N PMC7126015 10.1016/j.physa.2019.04.052 tjnt01ld 0.578203 Li_C_2018, Lloyd_2009, Chowell_2017
14 Groendyke_2012 A Network-based Analysis of the 1861 Hagelloch Measles Data Groendyke, Chris; Welch, David; Hunter, David R. 2012 2012-02-24 PMC N PMC4553425 22364540.0 10.1111/j.1541-0420.2012.01748.x w4g8mzuy 0.568272 Bifolchi_2013, Höhle_2007, Chowell_2017, Bocharov_2018 Safi_2011, Giardina_2017, Small_2005
15 Getz_2017 Discrete Stochastic Analogs of Erlang Epidemic Models Getz, Wayne M.; Dougherty, Eric R. 2017 2017-11-20 None N PMC6120589 29157162.0 10.1080/17513758.2017.1401677 v4nhkt4p 0.552647 Bifolchi_2013, Chowell_2017, Höhle_2007, Kenah_2007, Zhao_2013 Roy_M_2006, Chen_2019, Zimmer_2017
16 Simon_2010 Exact epidemic models on graphs using graph-automorphism driven lumping Simon, Péter L.; Taylor, Michael; Kiss, Istvan Z. 2010 2010-04-28 PMC N PMC7079990 20425114.0 10.1007/s00285-010-0344-x 7c4jsvlz 0.530060 Bocharov_2018, Bifolchi_2013, Chowell_2017 Kenah_2007, Rolls_2015, Sherborne_2015, Roy_M_2006
17 Kosmidis_2020 A Fractal kinetics SI model can explain the dynamics of COVID-19 epidemics Kosmas Kosmidis; Panos Macheras 2020 2020-04-17 BioRxiv Y 10.1101/2020.04.11.20061366 pkac2i3b 0.518695 Bocharov_2018, Li_K_2011, Bifolchi_2013, Li_C_2018, Chowell_2017
18 Hu_J_2016 Optimal Data Transmission Strategy for Healthcare-Based Wireless Sensor Networks: A Stochastic Differential Game Approach Hu, Jiahui; Qian, Qing; Fang, An; Wu, Sizhu; Xie, Yi 2016 2016-05-13 PMC N PMC7088864 10.1007/s11277-016-3316-7 lwyeqqvy 0.502758 Bocharov_2018, Duan_2015 Liu_T_2010
19 Jo_H_2020 Analysis of COVID-19 spread in South Korea using the SIR model with time-dependent parameters and deep learning Hyeontae Jo; Hwijae Son; Se Young Jung; Hyung Ju Hwang 2020 2020-04-17 BioRxiv Y 10.1101/2020.04.13.20063412 r01erhp3 0.502271 Bocharov_2018, Bifolchi_2013, Chowell_2017, Höhle_2007
20 Liao_2013 The benefit of modeling jumps in realized volatility for risk prediction: Evidence from Chinese mainland stocks Liao, Yin 2013 2013-06-30 PMC N PMC7147854 10.1016/j.pacfin.2013.01.002 eszlg47q 0.495585 Bocharov_2018, Chowell_2017, So_M_2008, Duan_2015
21 Hao_T_2020 Prediction of Coronavirus Disease (covid-19) Evolution in USA with the Model Based on the Eyring Rate Process Theory and Free Volume Concept Tian Hao 2020 2020-04-22 BioRxiv Y 10.1101/2020.04.16.20068692 wofyftrs 0.482588 Bocharov_2018, Zheng_2020, Leach_2010
22 Duchêne_2015 Evaluating the Adequacy of Molecular Clock Models Using Posterior Predictive Simulations Duchêne, David A.; Duchêne, Sebastian; Holmes, Edward C.; Ho, Simon Y.W. 2015 2015-07-10 PMC N PMC7107558 26163668.0 10.1093/molbev/msv154 l9wrrapv 0.476117 Bocharov_2018, Chowell_2017 Hilton_2018
23 Kim_S_2020 AAEDM: Theoretical Dynamic Epidemic Diffusion Model and Covid-19 Korea Pandemic Cases Song-Kyoo Kim 2020 2020-03-20 BioRxiv Y 10.1101/2020.03.17.20037838 jf36as70 0.475249 Bocharov_2018, Chowell_2017, Grassly_2008, Bifolchi_2013 Distante_2020, Peng_2020, Zhan_2020
24 Fujie_2007 Effects of superspreaders in spread of epidemic Fujie, Ryo; Odagaki, Takashi 2007 2007-02-01 PMC N PMC7127014 10.1016/j.physa.2006.08.050 bph4nuch 0.464528 Bifolchi_2013, Kenah_2007, Li_K_2011, Li_C_2018 Shang_2013, Edholm_2018, James_2006, Small_2006
25 Wu_Z_2015 Partially latent class models for case–control studies of childhood pneumonia aetiology Wu, Zhenke; Deloria‐Knoll, Maria; Hammitt, Laura L.; Zeger, Scott L. 2015 2015-03-26 PMC N PMC7169268 10.1111/rssc.12101 b39fo4a8 0.456252 Bocharov_2018, Lloyd_2009, Li_C_2018, Zheng_2020
26 Ross_2016 How domain growth is implemented determines the long term behaviour of a cell population through its effect on spatial correlations Robert J. H. Ross; R. E. Baker; C. A. Yates 2016 2016-02-26 BioRxiv N 10.1101/041509 lfm6erzy 0.446933 Bocharov_2018, O'Dea_2010
27 Menendez_2020 Elementary time-delay dynamics of COVID-19 disease Jose Menendez 2020 2020-03-30 BioRxiv Y 10.1101/2020.03.27.20045328 3y89lumh 0.446293 Li_C_2018, Bifolchi_2013, Lloyd_2009, Renna_2020, Welch_2011 Shi_P_2020, Yong_2016, Smeets_2020
28 Souza_2020 Using curvature to infer COVID-19 fractal epidemic network fragility and systemic risk Danillo Barros de Souza; Fernando A N Santos; Everlon Figueiroa; Jailson B Correia; Hernande P da Silva; Jose Luiz de Lima Filho; Jones Albuquerque 2020 2020-04-06 BioRxiv Y 10.1101/2020.04.01.20047225 a47l7m47 0.416443 Bifolchi_2013, Bocharov_2018, Chowell_2017, Li_K_2011, Li_C_2018 Denphedtnong_2013, Loberg_2020, Bombardt_2006
29 Hao_T_2020 Infection Dynamics of Coronavirus Disease 2019 (Covid-19) Modeled with the Integration of the Eyring Rate Process Theory and Free Volume Concept Tian Hao 2020 2020-02-29 BioRxiv Y 10.1101/2020.02.26.20028571 zriuh5q5 0.415687 Bifolchi_2013, Welch_2011, Li_C_2018
30 Maeno_2010 Discovering network behind infectious disease outbreak Maeno, Yoshiharu 2010 2010-11-01 PMC N PMC7125928 10.1016/j.physa.2010.07.014 qnn4v0k2 0.408967 Bifolchi_2013, Kenah_2007, Chowell_2017, Höhle_2007 Bifolchi_2013, Feng_2018, Sherborne_2015, Colizza_2007
31 Grant_2020 Dynamics of COVID‐19 epidemics: SEIR models underestimate peak infection rates and overestimate epidemic duration Alastair Grant 2020 2020-04-06 BioRxiv N 10.1101/2020.04.02.20050674 q8539o41 0.406579 Bifolchi_2013, Kenah_2007, Welch_2011, Li_C_2018 Kretzschmar_2020, Zimmer_2017, Sherborne_2015
32 Brett_2017 Anticipating the emergence of infectious diseases Brett, Tobias S.; Drake, John M.; Rohani, Pejman 2017 2017-07-05 COMM-USE N PMC5550966 28679666.0 10.1098/rsif.2017.0115 ewooc2am 0.402905 Bocharov_2018, Bauer_2009, Chowell_2017 Dimitrov_2008, Chen_2019
33 Chandra_2020 Stochastic Compartmental Modelling of SARS-CoV-2 with Approximate Bayesian Computation Vedant Chandra 2020 2020-04-01 BioRxiv Y 10.1101/2020.03.29.20046862 itviia7v 0.400462 Bocharov_2018, Chowell_2017, Bifolchi_2013, Renna_2020 Smeets_2020, Safi_2011, Chernyshev_2020
34 Liu_T_2010 Integration of small world networks with multi-agent systems for simulating epidemic spatiotemporal transmission Liu, Tao; Li, Xia; Liu, XiaoPing 2010 2010-05-06 PMC N PMC7089090 10.1007/s11434-009-0623-3 u48mhxbc 0.389794 Bifolchi_2013, Bocharov_2018, Chowell_2017, Li_K_2011 Han_X_2014, Song_2015, Kan_J_2017, Denphedtnong_2013
35 Rolls_2015 A Simulation Study Comparing Epidemic Dynamics on Exponential Random Graph and Edge-Triangle Configuration Type Contact Network Models Rolls, David A.; Wang, Peng; McBryde, Emma; Pattison, Philippa; Robins, Garry 2015 2015-11-10 None N PMC4640514 26555701.0 10.1371/journal.pone.0142181 n5i4xez4 0.388437 Bifolchi_2013, Kenah_2007 Han_X_2014, Kenah_2007, Groendyke_2012
36 Abdulrahman_2020 SimCOVID: An Open-Source Simulink-Based Program for Simulating the COVID-19 Epidemic Ismael Khorshed Abdulrahman 2020 2020-04-17 BioRxiv Y 10.1101/2020.04.13.20063354 nexylnv4 0.385376 Höhle_2007, Bifolchi_2013, Renna_2020, Bocharov_2018
37 Mummert_2019 Parameter identification for a stochastic SEIRS epidemic model: case study influenza Mummert, Anna; Otunuga, Olusegun M. 2019 2019-05-06 PMC N PMC7080032 31062075.0 10.1007/s00285-019-01374-z isqqhki4 0.385271 Bifolchi_2013, Kenah_2012, Höhle_2007, Lloyd_2009, Welch_2011 Safi_2011, Shi_P_2020, Park_2016, Denphedtnong_2013
38 Dube_2008 Mathematical Analysis of Copy Number Variation in a DNA Sample Using Digital PCR on a Nanofluidic Device Dube, Simant; Qin, Jian; Ramakrishnan, Ramesh 2008 2008-08-06 COMM-USE N PMC2483940 18682853.0 10.1371/journal.pone.0002876 ueglfhux 0.384306
39 Walker_2010 Parameter inference in small world network disease models with approximate Bayesian Computational methods Walker, David M.; Allingham, David; Lee, Heung Wing Joseph; Small, Michael 2010 2010-02-01 PMC N PMC7126433 10.1016/j.physa.2009.09.053 oglwveln 0.370786 Bocharov_2018, Chowell_2017, Bifolchi_2013, Höhle_2007 Bifolchi_2013, Chowell_2017, Lloyd_2009
40 Bettencourt_2007 Towards Real Time Epidemiology: Data Assimilation, Modeling and Anomaly Detection of Health Surveillance Data Streams Bettencourt, Luís M. A.; Ribeiro, Ruy M.; Chowell, Gerardo; Lant, Timothy; Castillo-Chavez, Carlos 2007 2007-01-01 PMC N PMC7122958 10.1007/978-3-540-72608-1_8 cf2bbn3p 0.369036 Bocharov_2018, Chowell_2017 Chowell_2017, Southall_2020, Lega_2016, Cauchemez_2012
41 Hsu_C_2015 Analysis of household data on influenza epidemic with Bayesian hierarchical model Hsu, C.Y.; Yen, A.M.F.; Chen, L.S.; Chen, H.H. 2015 2015-03-31 PMC N PMC7094348 25484132.0 10.1016/j.mbs.2014.11.006 a4d7eqa0 0.366303 Bifolchi_2013, Chowell_2017, Höhle_2007, Lloyd_2009 Park_2017, Safi_2011, Groendyke_2012
42 Thomas_2017 Extended models for nosocomial infection: parameter estimation and model selection Thomas, Alun; Khader, Karim; Redd, Andrew; Leecaster, Molly; Zhang, Yue; Jones, Makoto; Greene, Tom; Samore, Matthew 2017 2017-10-12 PMC N PMC6145396 29040678.0 10.1093/imammb/dqx010 0auqfxur 0.366303 Bocharov_2018, Bifolchi_2013 López‐García_2019, Safi_2011
43 Maeno_2011 Discovery of a missing disease spreader Maeno, Yoshiharu 2011 2011-10-01 PMC N PMC7126838 10.1016/j.physa.2011.05.005 msgan1mk 0.345857 Bifolchi_2013, Li_C_2018 Chen_2019, Safi_2011
44 Baerwolff_2020 A Contribution to the Mathematical Modeling of the Corona/COVID-19 Pandemic Guenter K.F. Baerwolff 2020 2020-04-06 BioRxiv N 10.1101/2020.04.01.20050229 69wk591l 0.345857 Zheng_2020, Bocharov_2018 Yong_2016, Kim_Y_2016, Nadeau_2014
45 Chernyshev_2020 Autocatalytic Model for Covid-19 Progression in a Country Anatoly Chernyshev 2020 2020-04-07 BioRxiv Y 10.1101/2020.04.03.20052985 z19umr4q 0.345341 Bifolchi_2013, Bocharov_2018, Chowell_2017, Lloyd_2009 Smeets_2020, Yong_2016, Shi_P_2020
46 Buonomo_2012 Global stability for an HIV-1 infection model including an eclipse stage of infected cells Buonomo, Bruno; Vargas-De-León, Cruz 2012 2012-01-15 PMC N 10.1016/j.jmaa.2011.07.006 04l3474h 0.345341 Bocharov_2018, Simon_2010 Fudolig_2020, Saad_2018, Zhang_2018, Gao_D_2018
47 Shi_Y_2003 Stochastic dynamic model of SARS spreading Shi, Yaolin 2003 2003-01-01 PMC N PMC7089366 10.1007/bf03184164 kckzvlcw 0.344891 Bifolchi_2013, Wu_Q_2014, Lloyd_2009, Li_C_2018, Bocharov_2018 Zhou_2004, Naheed_2014, Shi_P_2020, Ng_T_2003
48 Sedov_2020 Modeling quarantine during epidemics by mass-testing with drones Leonid Sedov; Alexander Krasnochub; valentin polishchuk 2020 2020-04-20 BioRxiv N 10.1101/2020.04.15.20067025 98i0dwat 0.343029
49 Lekone_2008 Bayesian Analysis of Severe Acute Respiratory Syndrome: The 2003 Hong Kong Epidemic Lekone, Phenyo E. 2008 2008-07-09 PMC N PMC7161832 18615412.0 10.1002/bimj.200710431 qqcb85uk 0.332185 Höhle_2007, Griette_2020, Renna_2020, Lloyd_2009
50 Guo_W_2018 Stochastic persistence and stationary distribution in an SIS epidemic model with media coverage Guo, Wenjuan; Cai, Yongli; Zhang, Qimin; Wang, Weiming 2018 2018-02-15 PMC N PMC7125861 10.1016/j.physa.2017.11.137 04p0c4jt 0.331278 Bifolchi_2013, Bocharov_2018, Kenah_2007, Renna_2020 Fan_K_2020, Zhao_2018, Chen_2018, Yuan_2018
51 Wang_2013 Modelling the spreading rate of controlled communicable epidemics through an entropy-based thermodynamic model Wang, WenBin; Wu, ZiNiu; Wang, ChunFeng; Hu, RuiFeng 2013 2013-10-03 PMC N PMC7111546 10.1007/s11433-013-5321-0 p8fqvmy8 0.327593 Bifolchi_2013, Lloyd_2009, Höhle_2007, Kenah_2007, Simon_2010 Safi_2011, Chen_2019, Imran_2018, Shi_P_2020
52 Lan_G_2019 A stochastic SIRS epidemic model with non-monotone incidence rate under regime-switching Lan, Guijie; Lin, Ziyan; Wei, Chunjin; Zhang, Shuwen 2019 2019-11-30 PMC N PMC7127215 10.1016/j.jfranklin.2019.09.009 yjodgy2v 0.321836 Pekalp_2019, Bocharov_2018, Bifolchi_2013 Fan_K_2020, Sirijampa_2018, Li_F_2018, Chen_2018
53 Shao_2020 Dynamic models for Coronavirus Disease 2019 and data analysis Shao, Nian; Zhong, Min; Yan, Yue; Pan, HanShuang; Cheng, Jin; Chen, Wenbin 2020 2020-03-24 PMC Y PMC7168448 10.1002/mma.6345 kgrdul35 0.316921
54 Cazelles_2018 Accounting for non-stationarity in epidemiology by embedding time-varying parameters in stochastic models Cazelles, Bernard; Champagne, Clara; Dureau, Joseph 2018 2018-08-15 COMM-USE N PMC6110518 30110322.0 10.1371/journal.pcbi.1006211 hp2d68su 0.316177 Bocharov_2018, Bifolchi_2013, Chowell_2017, Li_K_2011 Safi_2011, Angulo_2013
55 Labadin_2020 Transmission Dynamics of 2019-nCoV in Malaysia Jane Labadin; Boon Hao Hong 2020 2020-02-11 BioRxiv Y 10.1101/2020.02.07.20021188 7axgotby 0.313889 Bifolchi_2013, Simon_2010, Bocharov_2018, Renna_2020 Shi_P_2020, Yong_2016, Biswas_2020
56 Yang_2020 Rational evaluation of various epidemic models based on the COVID-19 data of China Wuyue Yang; Dongyan Zhang; Liangrong Peng; Changjing Zhuge; Liu Hong 2020 2020-03-16 BioRxiv Y 10.1101/2020.03.12.20034595 qejmwvst 0.304996 Bocharov_2018, Chowell_2017, Lloyd_2009, Bifolchi_2013 Peng_2020, Ghaffarzadegan_2020, Distante_2020, Caccavo_2020
57 Hackl_2020 Modeling the COVID-19 pandemic - parameter identification and reliability of predictions Klaus Hackl 2020 2020-04-11 BioRxiv Y 10.1101/2020.04.07.20056937 osez25uj 0.304831 Zheng_2020, Bocharov_2018 Smeets_2020, Zareie_2020, Peng_2020, Ghaffarzadegan_2020
58 Liu_C_2020 D(2)EA: Depict the Epidemic Picture of COVID-19 Liu, Chenzhengyi; Zhao, Jingwei; Liu, Guohang; Gao, Yuanning; Gao, Xiaofeng 2020 2020-04-07 PMC Y PMC7137902 10.1007/s12204-020-2170-7 63hcyb9e 0.300035 Bocharov_2018, Chowell_2017, Renna_2020 Peng_2020, Li_S_2020