Topic 09 -- Abstracts with Biological Entities (English) - 75 Topics / Sub-Topic Model 08 - 15 Topics

cite ad title authors publish year publish time dataset abstract mentions covid pmcid pubmed id doi cord uid topic weight Similarity scispacy Similarity specter
1 Mao_L_2010 Spatial–temporal transmission of influenza and its health risks in an urbanized area Mao, Liang; Bian, Ling 2010 2010-05-31 PMC N PMC7124201 10.1016/j.compenvurbsys.2010.03.004 426rfwqc 0.663194
2 Lai_P_2015 Effects of geographic scale on population factors in acute disease diffusion analysis Lai, Poh-Chin; Chow, Chun Bong; Wong, Ho Ting; Kwong, Kim Hung; Liu, Shao Haei; Tong, Wah Kun; Cheung, Wai Keung; Wong, Wing Leung; Kwan, Yat Wah 2015 2015-10-31 PMC N PMC7148642 10.1016/j.joad.2015.06.006 e734j9m8 0.620112 Cauchemez_2012, Chowell_2017 White_2013
3 Tizzoni_2014 On the Use of Human Mobility Proxies for Modeling Epidemics Tizzoni, Michele; Bajardi, Paolo; Decuyper, Adeline; Kon Kam King, Guillaume; Schneider, Christian M.; Blondel, Vincent; Smoreda, Zbigniew; González, Marta C.; Colizza, Vittoria 2014 2014-07-10 COMM-USE N PMC4091706 25010676.0 10.1371/journal.pcbi.1003716 65b1tk0m 0.594605 Li_C_2018, Bifolchi_2013, Welch_2011 Panigutti_2017, Moss_2019
4 Luo_W_2018 A large-scale location-based social network to understanding the impact of human geo-social interaction patterns on vaccination strategies in an urbanized area Luo, Wei; Gao, Peng; Cassels, Susan 2018 2018-11-30 PMC N PMC6457472 30983651.0 10.1016/j.compenvurbsys.2018.06.008 pd9elo4l 0.592952 Chen_2007, Luo_W_2016
5 Moss_2019 What can urban mobility data reveal about the spatial distribution of infection in a single city? Moss, Robert; Naghizade, Elham; Tomko, Martin; Geard, Nicholas 2019 2019-05-29 None N PMC6542035 31142311.0 10.1186/s12889-019-6968-x 5nh4zp4u 0.587392 Li_C_2018 Vazquez-Prokopec_2013, Panigutti_2017
6 Xiao_2012 Influence of extreme weather and meteorological anomalies on outbreaks of influenza A (H1N1) Xiao, Hong; Tian, HuaiYu; Lin, XiaoLing; Gao, LiDong; Dai, XiangYu; Zhang, XiXing; Chen, BiYun; Zhao, Jian; Xu, JingZhe 2012 2012-12-29 COMM-USE N PMC7088951 10.1007/s11434-012-5571-7 b0wd2jd3 0.562240
7 Bobashev_2008 Sampling for Global Epidemic Models and the Topology of an International Airport Network Bobashev, Georgiy; Morris, Robert J.; Goedecke, D. Michael 2008 2008-09-08 COMM-USE N PMC2522280 18776932.0 10.1371/journal.pone.0003154 unce8thq 0.558682 Li_C_2018, Welch_2011
8 Yan_Y_2017 Evaluation of airborne disease infection risks in an airliner cabin using the Lagrangian-based Wells-Riley approach Yan, Yihuan; Li, Xiangdong; Shang, Yidan; Tu, Jiyuan 2017 2017-08-15 PMC N PMC7111330 10.1016/j.buildenv.2017.05.013 q18cs63z 0.543183 Bifolchi_2013, Li_C_2018, Zheng_2020, Lloyd_2009
9 Huber_2019 Market Area Delineation for Airports to Predict the Spread of Infectious Disease Huber, Carmen; Rinner, Claus 2019 2019-03-14 PMC N PMC7120907 10.1007/978-3-030-14745-7_15 6apsd91c 0.535007
10 Bjørnstad_2019 Comparison of alternative models of human movement and the spread of disease Ottar N. Bjørnstad; Bryan T. Grenfell; Cecile Viboud; Aaron A. King 2019 2019-12-19 BioRxiv N 10.1101/2019.12.19.882175 7a5nxxar 0.527519 Bifolchi_2013, Li_C_2018, O'Dea_2010, Welch_2011 Citron_2020, Safi_2011, Denphedtnong_2013, Zhong_2009
11 Peixoto_2020 Potential dissemination of epidemics based on Brazilian mobile geolocation data. Part I: Population dynamics and future spreading of infection in the states of Sao Paulo and Rio de Janeiro during the pandemic of COVID-19. Pedro S. Peixoto; Diego R. Marcondes; Cláudia M Peixoto; Lucas Queiroz; Rafael Gouveia; Afonso Delgado; Sérgio M Oliva 2020 2020-04-11 BioRxiv Y 10.1101/2020.04.07.20056739 ioig3ldz 0.527197 da_Costa_2018
12 Meng_2005 Understanding the spatial diffusion process of severe acute respiratory syndrome in Beijing Meng, B.; Wang, J.; Liu, J.; Wu, J.; Zhong, E. 2005 2005-12-31 PMC N PMC7111650 16214187.0 10.1016/j.puhe.2005.02.003 05hcci4l 0.514128 Li_C_2018, Mondor_2012, Wu_Q_2014
13 Vazquez-Prokopec_2013 Using GPS Technology to Quantify Human Mobility, Dynamic Contacts and Infectious Disease Dynamics in a Resource-Poor Urban Environment Vazquez-Prokopec, Gonzalo M.; Bisanzio, Donal; Stoddard, Steven T.; Paz-Soldan, Valerie; Morrison, Amy C.; Elder, John P.; Ramirez-Paredes, Jhon; Halsey, Eric S.; Kochel, Tadeusz J.; Scott, Thomas W.; Kitron, Uriel 2013 2013-04-08 COMM-USE N PMC3620113 23577059.0 10.1371/journal.pone.0058802 z8oh082s 0.513331 Moss_2019, Panigutti_2017
14 Falcón-Lezama_2016 Day-to-Day Population Movement and the Management of Dengue Epidemics Falcón-Lezama, Jorge A.; Martínez-Vega, Ruth A.; Kuri-Morales, Pablo A.; Ramos-Castañeda, José; Adams, Ben 2016 2016-10-04 COMM-USE N PMC5069346 27704330.0 10.1007/s11538-016-0209-6 a2jsorm2 0.508599 Imran_2018, Chin_2019, Akhmetzhanov_2019
15 Chen_2007 Incorporating Geographical Contacts into Social Network Analysis for Contact Tracing in Epidemiology: A Study on Taiwan SARS Data Chen, Yi-Da; Tseng, Chunju; King, Chwan-Chuen; Wu, Tsung-Shu Joseph; Chen, Hsinchun 2007 2007-01-01 PMC N PMC7122638 10.1007/978-3-540-72608-1_3 og0b2l6b 0.501050 Pacheco_2017, Li_C_2018, Welch_2011, Krause_2007 Yang_2020, Stein_2014
16 Bennett_2013 Airborne exposure patterns from a passenger source in aircraft cabins Bennett, James S.; Jones, Byron W.; Hosni, Mohammad H.; Zhang, Yuanhui; Topmiller, Jennifer L.; Dietrich, Watts L. 2013 2013-11-17 PMC N PMC4626449 26526769.0 10.1080/10789669.2013.838990 yk9p3i0x 0.501008 Li_C_2018, Bifolchi_2013, Welch_2011, Lloyd_2009 Yan_Y_2017
17 Colizza_2006 The Modeling of Global Epidemics: Stochastic Dynamics and Predictability Colizza, V.; Barrat, A.; Barthélemy, M.; Vespignani, A. 2006 2006-06-20 PMC N PMC7089095 17086489.0 10.1007/s11538-006-9077-9 g26xcgi1 0.493751 Li_C_2018, Bifolchi_2013, Bocharov_2018, Kenah_2007 Colizza_2007, Denphedtnong_2013
18 Eggo_2011 Spatial dynamics of the 1918 influenza pandemic in England, Wales and the United States Eggo, Rosalind M.; Cauchemez, Simon; Ferguson, Neil M. 2011 2011-02-06 COMM-USE N PMC3033019 20573630.0 10.1098/rsif.2010.0216 pixbry0c 0.475168 Li_C_2018, Bifolchi_2013, Giardina_2017, Kenah_2007
19 Firestone_2012 Adding the spatial dimension to the social network analysis of an epidemic: Investigation of the 2007 outbreak of equine influenza in Australia Firestone, Simon M.; Christley, Robert M.; Ward, Michael P.; Dhand, Navneet K. 2012 2012-09-15 PMC N PMC7126086 22365721.0 10.1016/j.prevetmed.2012.01.020 xftxcgeu 0.467688 Li_C_2018, Welch_2011, Pacheco_2017, Wu_Q_2014 Yang_2020, Chen_2007
20 Apolloni_2013 Age-specific contacts and travel patterns in the spatial spread of 2009 H1N1 influenza pandemic Apolloni, Andrea; Poletto, Chiara; Colizza, Vittoria 2013 2013-04-15 None N PMC3644502 23587010.0 10.1186/1471-2334-13-176 z8bjyr6k 0.466404 Li_C_2018, Wu_Q_2014, Wang_2017 Kretzschmar_2020, da_Costa_2018
21 da_Costa_2018 Spatiotemporal diffusion of influenza A (H1N1): Starting point and risk factors da Costa, Ana Carolina Carioca; Codeço, Cláudia Torres; Krainski, Elias Teixeira; Gomes, Marcelo Ferreira da Costa; Nobre, Aline Araújo 2018 2018-09-04 COMM-USE N PMC6122785 30180215.0 10.1371/journal.pone.0202832 ug1lt3f1 0.444626 Li_C_2018, Wu_Q_2014
22 Nicolaides_2019 Hand-hygiene mitigation strategies against global disease spreading through the air transportation network Christos Nicolaides; Demetris Avraam; Luis Cueto-Felgueroso; Marta C. González; Ruben Juanes 2019 2019-01-26 BioRxiv N 10.1101/530618 l353fvsp 0.439895 Denphedtnong_2013, Bucini_2019
23 Luo_W_2016 Visual analytics of geo-social interaction patterns for epidemic control Luo, Wei 2016 2016-08-10 COMM-USE N PMC4980799 27510908.0 10.1186/s12942-016-0059-3 vk91ovlf 0.431128 Bocharov_2018 Luo_W_2018, Chen_2007
24 Panigutti_2017 Assessing the use of mobile phone data to describe recurrent mobility patterns in spatial epidemic models Panigutti, Cecilia; Tizzoni, Michele; Bajardi, Paolo; Smoreda, Zbigniew; Colizza, Vittoria 2017 2017-05-17 COMM-USE N PMC5451791 28572990.0 10.1098/rsos.160950 borka6sq 0.430678 Li_C_2018, O'Dea_2010, Bifolchi_2013 Moss_2019, Tizzoni_2014, Vazquez-Prokopec_2013
25 Lin_S_2020 Research on the Influence of Effective Distance Between Cities on the Cross-regional Transmission of COVID-19 Shanlang Lin; Yanning Qiao; Junpei Huang; Na Yan 2020 2020-03-30 BioRxiv Y 10.1101/2020.03.27.20044958 dxtbp4kd 0.420729 Li_C_2018, Wu_Q_2014 Shanlang_2020
26 Antonio_2014 Growth Patterns and Scaling Laws Governing AIDS Epidemic in Brazilian Cities Antonio, Fernando Jose; de Picoli, Sergio; Teixeira, Jorge Juarez Vieira; Mendes, Renio dos Santos 2014 2014-10-23 COMM-USE N PMC4207789 25340796.0 10.1371/journal.pone.0111015 fgwoijut 0.417725 Li_C_2018, Wu_Q_2014 Safi_2011
27 Luca_2017 The impact of regular school closure on seasonal influenza epidemics: a data-driven spatial transmission model for Belgium Giancarlo De Luca; Kim Van Kerckhove; Pietro Coletti; Chiara Poletto; Nathalie Bossuyt; Niel Hens; Vittoria Colizza 2017 2017-12-07 BioRxiv N 10.1101/230565 xpbgpsp8 0.398314
28 Ruan_2015 Integrated travel network model for studying epidemics: Interplay between journeys and epidemic Ruan, Zhongyuan; Wang, Chaoqing; Ming Hui, Pak; Liu, Zonghua 2015 2015-06-15 COMM-USE N PMC4466778 26073191.0 10.1038/srep11401 722fuzpe 0.392147 Xu_Z_2014
29 Chandra_2013 A geographic analysis of population density thresholds in the influenza pandemic of 1918–19 Chandra, Siddharth; Kassens-Noor, Eva; Kuljanin, Goran; Vertalka, Joshua 2013 2013-02-20 COMM-USE N PMC3641965 23425498.0 10.1186/1476-072x-12-9 hwkouyzd 0.391073 Li_C_2018, Wu_Q_2014
30 Gao_X_2016 Building Ventilation as an Effective Disease Intervention Strategy in a Dense Indoor Contact Network in an Ideal City Gao, Xiaolei; Wei, Jianjian; Lei, Hao; Xu, Pengcheng; Cowling, Benjamin J.; Li, Yuguo 2016 2016-09-09 None N PMC5017609 27611368.0 10.1371/journal.pone.0162481 zl6su36n 0.385482 Li_C_2018, Bifolchi_2013
31 Robinson_2012 Spatial dynamics of airborne infectious diseases Robinson, Marguerite; Stilianakis, Nikolaos I.; Drossinos, Yannis 2012 2012-03-21 PMC N PMC7094105 22207025.0 10.1016/j.jtbi.2011.12.015 v5n6z095 0.384474 Li_C_2018, Bifolchi_2013, Liu_Z_2010, Welch_2011, Xu_F_2019 Kretzschmar_2020
32 Acuna-Zegarra_2020 The SARS-CoV-2 epidemic outbreak: a review of plausible scenarios of containment and mitigation for Mexico Manuel Adrian Acuna-Zegarra; Andreu Comas-Garcia; Esteban Hernandez-Vargas; Mario Santana-Cibrian; Jorge X. Velasco-Hernandez 2020 2020-03-31 BioRxiv Y 10.1101/2020.03.28.20046276 aiq6ejcq 0.364840 Ng_T_2003, Kretzschmar_2020
33 Lemey_2014 Unifying Viral Genetics and Human Transportation Data to Predict the Global Transmission Dynamics of Human Influenza H3N2 Lemey, Philippe; Rambaut, Andrew; Bedford, Trevor; Faria, Nuno; Bielejec, Filip; Baele, Guy; Russell, Colin A.; Smith, Derek J.; Pybus, Oliver G.; Brockmann, Dirk; Suchard, Marc A. 2014 2014-02-20 None N PMC3930559 24586153.0 10.1371/journal.ppat.1003932 04q71md3 0.362473 Lemey_2009
34 Mao_L_2015 Modeling monthly flows of global air travel passengers: An open-access data resource Mao, Liang; Wu, Xiao; Huang, Zhuojie; Tatem, Andrew J. 2015 2015-10-31 PMC N PMC7127637 10.1016/j.jtrangeo.2015.08.017 k0xat0u7 0.355737 Bifolchi_2013
35 Cao_Z_2010 Spatio-temporal evolution of Beijing 2003 SARS epidemic Cao, ZhiDong; Zeng, DaJun; Zheng, XiaoLong; Wang, QuanYi; Wang, FeiYue; Wang, JinFeng; Wang, XiaoLi 2010 2010-05-12 PMC N PMC7104599 10.1007/s11430-010-0043-x sxwwi4zq 0.352659 Li_C_2018 Cao_C_2016
36 López‐García_2019 A Multicompartment SIS Stochastic Model with Zonal Ventilation for the Spread of Nosocomial Infections: Detection, Outbreak Management, and Infection Control López‐García, Martín; King, Marco‐Felipe; Noakes, Catherine J. 2019 2019-03-29 None N PMC6850612 30925211.0 10.1111/risa.13300 lm4rfabw 0.344011 Li_C_2018, Mondor_2012, Wu_Q_2014 Safi_2011, Denphedtnong_2013
37 Pujari_2020 Multi-city modeling of epidemics using spatial networks: Application to 2019-nCov (COVID-19) coronavirus in India Bhalchandra S Pujari; Snehal M Shekatkar 2020 2020-03-17 BioRxiv Y 10.1101/2020.03.13.20035386 hxuyaany 0.342378 Bocharov_2018, Bifolchi_2013 Gross_2020
38 Yang_2007 Individual space–time activity-based modelling of infectious disease transmission within a city Yang, Yong; Atkinson, Peter; Ettema, Dick 2007 2007-11-13 PMC N PMC2607451 17999949.0 10.1098/rsif.2007.1218 vv9zf77t 0.329591 Li_C_2018, Welch_2011 Knipl_2016, Angulo_2013, Denphedtnong_2013, Bifolchi_2013
39 Chen_2019 Persistent spatial patterns of interacting contagions Chen, Li 2019 2019-02-14 PMC N PMC7092948 30934258.0 10.1103/physreve.99.022308 tt9tyul0 0.329019 Li_C_2018, Bocharov_2018, Welch_2011 Zhan_2018, Van_Segbroeck_2010, Denphedtnong_2013, Kubiak_2010
40 Knipl_2016 The Impact of Movement on Disease Dynamics in a Multi-city Compartmental Model Including Residency Patch Knipl, Diána 2016 2016-02-17 PMC N PMC7123714 10.1007/978-3-319-30379-6_24 wf6lz1ed 0.328857 Li_C_2018, Pacheco_2017 Denphedtnong_2013, Citron_2020, Cheng_2017
41 Isdory_2015 The Impact of Human Mobility on HIV Transmission in Kenya Isdory, Augustino; Mureithi, Eunice W.; Sumpter, David J. T. 2015 2015-11-24 None N PMC4657931 26599277.0 10.1371/journal.pone.0142805 wy4ayluv 0.328293 Li_C_2018, O'Dea_2010, Welch_2011 Wang_2012, Stein_2014
42 Akay_2020 MARKOVIAN RANDOM WALK MODELING AND VISUALIZATION OF THE EPIDEMIC SPREAD OF COVID-19 Haluk Akay; George Barbastathis 2020 2020-04-17 BioRxiv Y 10.1101/2020.04.12.20062927 fetbio7q 0.325732 Li_C_2018, Lu_J_2020
43 Bifolchi_2013 Spatial approximations of network-based individual level infectious disease models Bifolchi, Nadia; Deardon, Rob; Feng, Zeny 2013 2013-09-30 PMC N 23973181.0 10.1016/j.sste.2013.07.001 evpj67t1 0.323295 Chowell_2017, Kenah_2007, Welch_2011, Simon_2010 Chen_2014, Feng_2018, Van_Segbroeck_2010, Sherborne_2015
44 Xu_F_2013 Spatial spread of an epidemic through public transportation systems with a hub Xu, Fei; Connell McCluskey, C.; Cressman, Ross 2013 2013-11-30 PMC N PMC7094585 24018293.0 10.1016/j.mbs.2013.08.014 ras60580 0.322550 Li_C_2018 Denphedtnong_2013, Ruan_2015, Nakata_2014
45 Rader_2020 Crowding and the epidemic intensity of COVID-19 transmission Benjamin Rader; Samuel Scarpino; Anjalika Nande; Alison Hill; Benjamin Dalziel; Robert Reiner; David Pigott; Bernardo Gutierrez; Munik Shrestha; John Brownstein; Marcia Castro; Huaiyu Tian; Bryan Grenfell; Oliver Pybus; Jessica Metcalf; Moritz U.G. Kraemer 2020 2020-04-20 BioRxiv Y 10.1101/2020.04.15.20064980 iy1enazk 0.321616
46 Hilton_2020 Estimation of country-level basic reproductive ratios for novel Coronavirus (COVID-19) using synthetic contact matrices Joe Hilton; Matt J Keeling 2020 2020-02-27 BioRxiv Y 10.1101/2020.02.26.20028167 96wkqutc 0.317611 Li_C_2018
47 Cao_C_2016 Analysis of Spatiotemporal Characteristics of Pandemic SARS Spread in Mainland China Cao, Chunxiang; Chen, Wei; Zheng, Sheng; Zhao, Jian; Wang, Jinfeng; Cao, Wuchun 2016 2016-08-15 COMM-USE N PMC5002496 27597972.0 10.1155/2016/7247983 si5c14e8 0.304993 Bifolchi_2013, Lemey_2009, Li_C_2018, Giardina_2017
48 Gong_2014 Epidemic spreading in metapopulation networks with heterogeneous infection rates Gong, Yong-Wang; Song, Yu-Rong; Jiang, Guo-Ping 2014 2014-12-15 PMC N PMC7125748 10.1016/j.physa.2014.08.056 ayzbh7bw 0.303767 Li_C_2018, Kenah_2007, Bifolchi_2013, Li_K_2011 Shang_2013, Li_C_2018, Han_X_2014, Kan_J_2017
49 Danon_2009 The role of routine versus random movements on the spread of disease in Great Britain Danon, Leon; House, Thomas; Keeling, Matt J. 2009 2009-12-31 PMC N 21352771.0 10.1016/j.epidem.2009.11.002 574hpfl5 0.303374 Li_C_2018 Safi_2011, Citron_2020, Chis_Ster_2007
50 Dommar_2014 An agent-based model driven by tropical rainfall to understand the spatio-temporal heterogeneity of a chikungunya outbreak Dommar, Carlos J.; Lowe, Rachel; Robinson, Marguerite; Rodó, Xavier 2014 2014-01-31 PMC N PMC7117343 23958228.0 10.1016/j.actatropica.2013.08.004 0nj1hmma 0.303374 Li_C_2018, Welch_2011, Bifolchi_2013, Pacheco_2017, Wu_Q_2014 Kong_2018