Topic 04 -- Abstracts with Biological Entities (English) - 75 Topics / Sub-Topic Model 08 - 15 Topics

cite ad title authors publish year publish time dataset abstract mentions covid pmcid pubmed id doi cord uid topic weight Similarity scispacy Similarity specter
1 Choi_2018 High reproduction number of Middle East respiratory syndrome coronavirus in nosocomial outbreaks: mathematical modelling in Saudi Arabia and South Korea Choi, S.; Jung, E.; Choi, B.Y.; Hur, Y.J.; Ki, M. 2018 2018-06-30 PMC N PMC7114943 28958834.0 10.1016/j.jhin.2017.09.017 19jwawrm 0.814519 batista_2020
2 Nishiura_2009 Early Epidemiological Assessment of the Virulence of Emerging Infectious Diseases: A Case Study of an Influenza Pandemic Nishiura, Hiroshi; Klinkenberg, Don; Roberts, Mick; Heesterbeek, Johan A. P. 2009 2009-08-31 COMM-USE N PMC2729920 19718434.0 10.1371/journal.pone.0006852 7v4y02j6 0.805375 Li_C_2018, Wu_Q_2014, Chen_2018, Lloyd_2009
3 White_2008 Transmissibility of the Influenza Virus in the 1918 Pandemic White, Laura Forsberg; Pagano, Marcello 2008 2008-01-30 COMM-USE N PMC2204055 18231585.0 10.1371/journal.pone.0001498 gaemgm0t 0.771111 Li_C_2018, Mondor_2012
4 Polyakov_2016 Bayesian Monitoring of Emerging Infectious Diseases Polyakov, Pavel; Breban, Romulus 2016 2016-04-05 COMM-USE N PMC4821533 27045370.0 10.1371/journal.pone.0152629 nrhq7lqg 0.753937 Safi_2011, Campbell_2019
5 Hirose_2007 The mixed trunsored model with applications to SARS Hirose, Hideo 2007 2007-04-30 PMC N PMC7125585 10.1016/j.matcom.2006.06.031 88xk1e6h 0.731685 Li_C_2018, Kenah_2012, Lloyd_2009, Zhao_2013 Safi_2011, Guanghong_2013, Lopez_2020, Ohkusa_2005
6 Obadia_2012 The R0 package: a toolbox to estimate reproduction numbers for epidemic outbreaks Obadia, Thomas; Haneef, Romana; Boëlle, Pierre-Yves 2012 2012-12-18 COMM-USE N PMC3582628 23249562.0 10.1186/1472-6947-12-147 vxg6b6d0 0.718979 Chowell_2017, Bocharov_2018 Thompson_2019, Safi_2011, Fraser_2007, Chong_2020
7 Nishiura_2010 Correcting the Actual Reproduction Number: A Simple Method to Estimate R(0) from Early Epidemic Growth Data Nishiura, Hiroshi 2010 2010-01-21 COMM-USE N PMC2819789 20195446.0 10.3390/ijerph7010291 sk9lud0o 0.706806 Höhle_2007, Lloyd_2009, Ma_J_2020, Bocharov_2018 Nishiura_2009, Chong_2020, Clancy_2015, Tennant_2018
8 Chang_2017 Estimation of basic reproduction number of the Middle East respiratory syndrome coronavirus (MERS-CoV) during the outbreak in South Korea, 2015 Chang, Hyuk-Jun 2017 2017-06-13 COMM-USE N PMC5470331 28610609.0 10.1186/s12938-017-0370-7 3e31i6sn 0.704350 Li_C_2018 Kim_Y_2016
9 Nishiura_2009 The ideal reporting interval for an epidemic to objectively interpret the epidemiological time course Nishiura, Hiroshi; Chowell, Gerardo; Heesterbeek, Hans; Wallinga, Jacco 2009 2009-07-01 PMC N PMC2842610 19570792.0 10.1098/rsif.2009.0153 f51rfq4e 0.703247 Bocharov_2018, Zheng_2020, Lloyd_2009 Safi_2011, Ganyani_2020, Thompson_2019
10 Kenah_2012 Nonparametric survival analysis of infectious disease data Kenah, Eben 2012 2012-10-09 PMC N PMC3681432 23772180.0 10.1111/j.1467-9868.2012.01042.x lwwzacy2 0.697203 Bifolchi_2013, Lloyd_2009, Zhao_2013 Safi_2011, Park_2019
11 Ganyani_2020 Estimating the generation interval for COVID-19 based on symptom onset data Tapiwa Ganyani; Cecile Kremer; Dongxuan Chen; Andrea Torneri; Christel Faes; Jacco Wallinga; Niel Hens 2020 2020-03-08 BioRxiv Y 10.1101/2020.03.05.20031815 cq6mivr9 0.690766 Kenah_2012, batista_2020, Li_C_2018
12 Nishiura_2006 Transmission potential of primary pneumonic plague: time inhomogeneous evaluation based on historical documents of the transmission network Nishiura, Hiroshi; Schwehm, Markus; Kakehashi, Masayuki; Eichner, Martin 2006 2006-07-01 PMC N PMC2566243 16790838.0 10.1136/jech.2005.042424 92gu6r6b 0.681547 Li_C_2018, Wu_Q_2014, Lloyd_2009
13 Cauchemez_2006 Real-time Estimates in Early Detection of SARS Cauchemez, Simon; Boëlle, Pierre-Yves; Donnelly, Christl A.; Ferguson, Neil M; Thomas, Guy; Leung, Gabriel M.; Hedley, Anthony J; Anderson, Roy M.; Valleron, Alain-Jacques 2006 2006-01-23 PMC N PMC3293464 16494726.0 10.3201/eid1201.050593 2uudklob 0.659829 Griette_2020, Li_C_2018, Wu_Q_2014 Chong_2020, White_2008, Zimmer_2017
14 Nishiura_2007 Time variations in the transmissibility of pandemic influenza in Prussia, Germany, from 1918–19 Nishiura, Hiroshi 2007 2007-06-04 COMM-USE N PMC1892008 17547753.0 10.1186/1742-4682-4-20 evyniq0v 0.642136 Li_C_2018, Kenah_2012, Sadun_2020, Tao_Y_2020 Nishiura_2006, Mostaço-Guidolin_2011
15 Lee_H_2019 Stochastic and spatio-temporal analysis of the Middle East Respiratory Syndrome outbreak in South Korea, 2015 Lee, Hyunsun 2019 2019-06-14 None N PMC6595052 31297469.0 10.1016/j.idm.2019.06.002 6cyhjt10 0.634777 Kim_Y_2016
16 Cori_2013 A New Framework and Software to Estimate Time-Varying Reproduction Numbers During Epidemics Cori, Anne; Ferguson, Neil M.; Fraser, Christophe; Cauchemez, Simon 2013 2013-09-15 PMC N PMC3816335 24043437.0 10.1093/aje/kwt133 itr3b63z 0.622239 Höhle_2007, Bocharov_2018, Lloyd_2009, Cauchemez_2012 Safi_2011, Thompson_2019, Chong_2020, Kucharski_2015
17 Britton_2019 Estimation in emerging epidemics: biases and remedies Britton, Tom; Scalia Tomba, Gianpaolo 2019 2019-01-16 None N PMC6364646 30958162.0 10.1098/rsif.2018.0670 jubl3vmq 0.615319 Lloyd_2009, Bifolchi_2013, Chowell_2017, Li_C_2018 Thompson_2019, Kretzschmar_2020, Safi_2011
18 Zhang_2007 The outbreak pattern of SARS cases in China as revealed by a mathematical model Zhang, Zhibin 2007 2007-06-16 PMC N PMC7117038 10.1016/j.ecolmodel.2007.01.020 8fswufnx 0.610022 Zhang_2004
19 Zhang_2004 The outbreak pattern of the SARS cases in Asia Zhang, Zhibin; Sheng, Chengfa; Ma, Zufei; Li, Dianmo 2004 2004-01-01 PMC N PMC7089107 10.1007/bf03183407 a346cjx4 0.607883 Zhang_2007
20 Chowell_2004 Model Parameters and Outbreak Control for SARS Chowell, Gerardo; Castillo-Chavez, Carlos; Fenimore, Paul W.; Kribs-Zaleta, Christopher M.; Arriola, Leon; Hyman, James M. 2004 2004-07-23 PMC N PMC3323341 15324546.0 10.3201/eid1007.030647 kfty0lbc 0.597728 Li_C_2018, Gong_2013, Welch_2011 Yong_2016, Safi_2011, Kim_Y_2016
21 Mostaço-Guidolin_2011 Variability in transmissibility of the 2009 H1N1 pandemic in Canadian communities Mostaço-Guidolin, Luiz C; Greer, Amy; Sander, Beate; Wu, Jianhong; Moghadas, Seyed M 2011 2011-12-13 COMM-USE N PMC3278401 22166307.0 10.1186/1756-0500-4-537 kkooawv0 0.597400 Mondor_2012
22 Shanmugam_2011 Spinned Poisson distribution with health management application Shanmugam, Ramalingam 2011 2011-04-26 PMC N PMC7087638 21519931.0 10.1007/s10729-011-9157-8 2j9pwy3l 0.592561 Bifolchi_2013, Kenah_2012, Li_C_2018 Safi_2011, White_2010
23 Torneri_2019 Realized generation times: contraction and impact of infectious period, reproduction number and population size Andrea Torneri; Amin Azmon; Christel Faes; Eben Kenah; Gianpaolo Scalia Tomba; Jacco Wallinga; Niel Hens 2019 2019-03-08 BioRxiv N 10.1101/568485 ag9mzwkx 0.589507 Li_C_2018, Wu_Q_2014, Sadun_2020 Kenah_2008, Kretzschmar_2020, Raja_Sekhara_Rao_2015
24 Scott_2004 Collecting Data To Assess SARS Interventions Scott, R. Douglas; Gregg, Edward; Meltzer, Martin I. 2004 2004-07-23 PMC N PMC3323351 15324551.0 10.3201/eid1007.030749 jt7b07v9 0.584703
25 Wu_K_2016 Estimation of the Basic Reproductive Number and Mean Serial Interval of a Novel Pathogen in a Small, Well-Observed Discrete Population Wu, Kendra M.; Riley, Steven 2016 2016-02-05 COMM-USE N PMC4744020 26849644.0 10.1371/journal.pone.0148061 zgdoznwf 0.584163 Lloyd_2009, Li_C_2018, O'Dea_2010 Kucharski_2015, Heffernan_2006, Heffernan_2005, Tennant_2018
26 Archer_2012 Reproductive Number and Serial Interval of the First Wave of Influenza A(H1N1)pdm09 Virus in South Africa Archer, Brett N.; Tempia, Stefano; White, Laura F.; Pagano, Marcello; Cohen, Cheryl 2012 2012-11-16 COMM-USE N PMC3500305 23166682.0 10.1371/journal.pone.0049482 9voqa1oy 0.579232 Hilton_2020
27 Chong_2017 A statistical method utilizing information of imported cases to estimate the transmissibility for an influenza pandemic Chong, Ka Chun; Zee, Benny Chung Ying; Wang, Maggie Haitian 2017 2017-02-21 COMM-USE N PMC5320693 28222682.0 10.1186/s12874-017-0300-1 w5z0ib20 0.579007 Lu_J_2020 Safi_2011, Chowell_2006, White_2013, Nishiura_2009
28 Ghani_2005 Methods for Estimating the Case Fatality Ratio for a Novel, Emerging Infectious Disease Ghani, A. C.; Donnelly, C. A.; Cox, D. R.; Griffin, J. T.; Fraser, C.; Lam, T. H.; Ho, L. M.; Chan, W. S.; Anderson, R. M.; Hedley, A. J.; Leung, G. M. 2005 2005-09-01 PMC N PMC7109816 16076827.0 10.1093/aje/kwi230 4us84ol1 0.577722 Li_C_2018, Mondor_2012, Kenah_2012, Griette_2020 Nishiura_2009, Safi_2011
29 Jewell_2006 Non‐parametric estimation of the case fatality ratio with competing risks data: an application to Severe Acute Respiratory Syndrome (SARS) Jewell, Nicholas P.; Lei, Xiudong; Ghani, Azra C.; Donnelly, Christl A.; Leung, Gabriel M.; Ho, Lai‐Ming; Cowling, Benjamin J.; Hedley, Anthony J. 2006 2006-09-15 PMC N PMC7169492 16981181.0 10.1002/sim.2691 y20azr7b 0.565829 Clancy_2015
30 Massad_2005 Forecasting versus projection models in epidemiology: The case of the SARS epidemics Massad, Eduardo; Burattini, Marcelo N.; Lopez, Luis F.; Coutinho, Francisco A.B. 2005 2005-12-31 PMC N PMC7116954 15893110.0 10.1016/j.mehy.2004.09.029 l0c69uul 0.560751 Li_C_2018, batista_2020 Safi_2011, Park_2017, Colizza_2007
31 Wallinga_2006 How generation intervals shape the relationship between growth rates and reproductive numbers Wallinga, J; Lipsitch, M 2006 2006-11-28 PMC N PMC1766383 17476782.0 10.1098/rspb.2006.3754 2nakt1yt 0.556498 O'Dea_2010, Li_C_2018, Lloyd_2009 Tennant_2018, Heffernan_2006, Thompson_2019, Wu_K_2016
32 Jamoulle_2016 A Comment on “Quaternary Prevention in Public Health” by Dr. Jong-Myon Bae Jamoulle, Marc 2016 2016-03-31 NONCOMM N PMC4829367 27055551.0 10.3961/jpmph.16.031 ef3y4561 0.553603
33 Lekone_2008 Bayesian Analysis of Severe Acute Respiratory Syndrome: The 2003 Hong Kong Epidemic Lekone, Phenyo E. 2008 2008-07-09 PMC N PMC7161832 18615412.0 10.1002/bimj.200710431 qqcb85uk 0.543238 Höhle_2007, Griette_2020, Renna_2020, Lloyd_2009
34 Diao_2020 Estimating the cure rate and case fatality rate of the ongoing epidemic COVID-19 Ying Diao; Xiaoyun Liu; Tao Wang; Xiaofei Zeng; Chen Dong; Changlong Zhou; Yuanming Zhang; Xuan She; Dingfu Liu; Zhongli Hu 2020 2020-02-20 BioRxiv Y 10.1101/2020.02.18.20024513 od8s0zhm 0.537497 Li_C_2018, Wu_Q_2014, Kenah_2012, Lauro_2020
35 Thompson_2019 Improved inference of time-varying reproduction numbers during infectious disease outbreaks Thompson, R.N.; Stockwin, J.E.; van Gaalen, R.D.; Polonsky, J.A.; Kamvar, Z.N.; Demarsh, P.A.; Dahlqwist, E.; Li, S.; Miguel, E.; Jombart, T.; Lessler, J.; Cauchemez, S.; Cori, A. 2019 2019-12-31 PMC N PMC7105007 31624039.0 10.1016/j.epidem.2019.100356 aakiwatt 0.534745 O'Dea_2010 Safi_2011, Kucharski_2015, Kretzschmar_2020
36 Kadi_2015 A Bayesian Inferential Approach to Quantify the Transmission Intensity of Disease Outbreak Kadi, Adiveppa S.; Avaradi, Shivakumari R. 2015 2015-02-15 COMM-USE N PMC4345055 25784956.0 10.1155/2015/256319 m5qabh1k 0.531721 Safi_2011, Kucharski_2015
37 Dell'Omodarme_2005 The probability of failing in detecting an infectious disease at entry points into a country Dell'Omodarme, M.; Prati, M. C. 2005 2005-06-24 PMC N PMC7169602 15977301.0 10.1002/sim.2131 yloz7321 0.515502 Li_C_2018, Welch_2011
38 Farewell_2005 SARS incubation and quarantine times: when is an exposed individual known to be disease free? Farewell, V. T.; Herzberg, A. M.; James, K. W.; Ho, L. M.; Leung, G. M. 2005 2005-10-19 PMC N PMC7169610 16237660.0 10.1002/sim.2206 z13aa1wk 0.515502
39 Tao_Y_2020 Maximum entropy method for estimating the reproduction number: An investigation for COVID-19 in China Yong Tao 2020 2020-03-20 BioRxiv Y 10.1101/2020.03.14.20035659 7umn0vkv 0.511621 Li_C_2018, Lloyd_2009, Wu_Q_2014
40 Lin_H_2011 A nonparametric estimation of the infection curve Lin, HuaZhen; Yip, Paul S. F.; Huggins, Richard M. 2011 2011-08-04 PMC N PMC7089265 10.1007/s11425-011-4224-7 ax4q0z3r 0.509977 Zheng_2020, Bifolchi_2013, Bocharov_2018, de_Silva_2012 Chong_2020, Zimmer_2017, Kucharski_2015, Safi_2011
41 White_2008 A likelihood-based method for real-time estimation of the serial interval and reproductive number of an epidemic White, L. Forsberg; Pagano, M. 2008 2008-07-20 PMC N PMC3951165 18058829.0 10.1002/sim.3136 zvnun1u0 0.509703 Bocharov_2018, Zheng_2020 Black_2013, Thompson_2019, Chong_2020, Zimmer_2017
42 Nishiura_2012 Estimating the transmission potential of supercritical processes based on the final size distribution of minor outbreaks Nishiura, Hiroshi; Yan, Ping; Sleeman, Candace K.; Mode, Charles J. 2012 2012-02-07 None N PMC3249525 22079419.0 10.1016/j.jtbi.2011.10.039 il12z4yh 0.509017 Li_C_2018, Kenah_2012, Lloyd_2009, Kenah_2007, Welch_2011 Safi_2011, Kucharski_2015, Clancy_2015, Nishiura_2006
43 Kwok_2015 Early real-time estimation of the basic reproduction number of emerging or reemerging infectious diseases in a community with heterogeneous contact pattern: Using data from Hong Kong 2009 H1N1 Pandemic Influenza as an illustrative example Kwok, Kin On; Davoudi, Bahman; Riley, Steven; Pourbohloul, Babak 2015 2015-09-15 COMM-USE N PMC4570805 26372219.0 10.1371/journal.pone.0137959 u5o6fq24 0.503998 Li_C_2018 Safi_2011, Kretzschmar_2020, Thompson_2019
44 Eifan_2017 A pandemic risk assessment of middle east respiratory syndrome coronavirus (MERS-CoV) in Saudi Arabia Eifan, Saleh A.; Nour, Islam; Hanif, Atif; Zamzam, Abdelrahman M.M.; AlJohani, Sameera Mohammed 2017 2017-06-06 None N PMC5643837 29062261.0 10.1016/j.sjbs.2017.06.001 sk2n2gxw 0.493699 Li_C_2018, batista_2020
45 Xia_Z_2015 Modeling the Transmission of Middle East Respirator Syndrome Corona Virus in the Republic of Korea Xia, Zhi-Qiang; Zhang, Juan; Xue, Ya-Kui; Sun, Gui-Quan; Jin, Zhen 2015 2015-12-21 None N PMC4686901 26690750.0 10.1371/journal.pone.0144778 5d58d66r 0.493156 Kim_Y_2016
46 Chowell_2006 Comparative estimation of the reproduction number for pandemic influenza from daily case notification data Chowell, Gerardo; Nishiura, Hiroshi; Bettencourt, Luís M.A 2006 2006-10-12 PMC N PMC2358966 17254982.0 10.1098/rsif.2006.0161 3uoylutj 0.488356 Höhle_2007 Safi_2011, Thompson_2019
47 Kenah_2008 Generation interval contraction and epidemic data analysis Kenah, Eben; Lipsitch, Marc; Robins, James M. 2008 2008-05-01 PMC N PMC2365921 18394654.0 10.1016/j.mbs.2008.02.007 fdmbqeaj 0.486193 Li_C_2018, Wu_Q_2014, O'Dea_2010 Torneri_2019, Ferguson_2009, Kretzschmar_2020, Ferguson_2005
48 Roberts_2007 Model-consistent estimation of the basic reproduction number from the incidence of an emerging infection Roberts, M. G.; Heesterbeek, J. A. P. 2007 2007-08-08 PMC N PMC2782110 17684743.0 10.1007/s00285-007-0112-8 1qo06ypf 0.482709 Heffernan_2006, Clancy_2015, Wallinga_2006, Tennant_2018
49 White_2013 Estimating the reproductive number in the presence of spatial heterogeneity of transmission patterns White, Laura F; Archer, Brett; Pagano, Marcello 2013 2013-07-26 COMM-USE N PMC3735474 23890514.0 10.1186/1476-072x-12-35 kwnteqg1 0.481847 Li_C_2018, O'Dea_2010, Giardina_2017, Welch_2011 Safi_2011, Kucharski_2015, Hilton_2020
50 Chuang_2010 A dynamic estimation of the daily cumulative cases during infectious disease surveillance: application to dengue fever Chuang, Pei-Hung; Chuang, Jen-Hsiang; Lin, I-Feng 2010 2010-05-27 COMM-USE N PMC2894833 20504379.0 10.1186/1471-2334-10-136 64ldtrjf 0.480852 Lloyd_2009, Black_2013, Kenah_2012, Li_C_2018 Safi_2011
51 Zhao_2020 Modelling the coronavirus disease (COVID-19) outbreak on the Diamond Princess ship using the public surveillance data from January 20 to February 20, 2020 Shi Zhao; Peihua Cao; Daozhou Gao; Zian Zhuang; Marc Chong; Yongli Cai; Jinjun Ran; Kai Wang; Yijun Lou; Weiming Wang; Lin Yang; Daihai He; Maggie H Wang 2020 2020-02-29 BioRxiv Y 10.1101/2020.02.26.20028449 onkdv388 0.477261 Yong_2016
52 Wallinga_2004 Different Epidemic Curves for Severe Acute Respiratory Syndrome Reveal Similar Impacts of Control Measures Wallinga, Jacco; Teunis, Peter 2004 2004-09-15 PMC N PMC7110200 15353409.0 10.1093/aje/kwh255 rl6yum7n 0.476303 Mondor_2012, Li_C_2018, Chen_2018, Wu_Q_2014 Kim_Y_2016, Ng_T_2003
53 Guanghong_2013 SARS epidemical forecast research in mathematical model Guanghong, Ding; Chang, Liu; Jianqiu, Gong; Ling, Wang; Ke, Cheng; Di, Zhang 2013 2013-03-22 PMC N PMC7089478 10.1360/04we0073 9xroa775 0.472980 Li_C_2018, Wu_Q_2014, Bocharov_2018, Li_K_2011 Ng_T_2003, Shi_P_2020, Peng_2020
54 Wang_2003 Control dynamics of severe acute respiratory syndrome transmission Wang, Haiying; Rong, Feng; Ke, Fujiu; Bai, Yilong 2003 2003-01-01 PMC N PMC7088754 10.1007/bf02901756 1v19lzyd 0.471924 Li_C_2018, Wu_Q_2014, Mondor_2012 Yong_2016
55 Reich_2012 Estimating Absolute and Relative Case Fatality Ratios from Infectious Disease Surveillance Data Reich, Nicholas G.; Lessler, Justin; Cummings, Derek A. T.; Brookmeyer, Ron 2012 2012-01-25 PMC N PMC4540071 22276951.0 10.1111/j.1541-0420.2011.01709.x s3xoti17 0.463882 Li_C_2018, Wu_Q_2014, Mondor_2012 White_2010, Nishiura_2009
56 White_2010 Reporting errors in infectious disease outbreaks, with an application to Pandemic Influenza A/H1N1 White, Laura F; Pagano, Marcello 2010 2010-12-15 COMM-USE N PMC3018365 21159178.0 10.1186/1742-5573-7-12 2ad1tu4s 0.463480 Zheng_2020, Lloyd_2009 Nishiura_2009
57 Kim_Y_2016 The Characteristics of Middle Eastern Respiratory Syndrome Coronavirus Transmission Dynamics in South Korea Kim, Yunhwan; Lee, Sunmi; Chu, Chaeshin; Choe, Seoyun; Hong, Saeme; Shin, Youngseo 2016 2016-01-18 None N PMC4776270 26981343.0 10.1016/j.phrp.2016.01.001 u5qt9es8 0.462763 Mondor_2012, Lu_J_2020 Yong_2016
58 Nishiura_2009 The Effective Reproduction Number as a Prelude to Statistical Estimation of Time-Dependent Epidemic Trends Nishiura, Hiroshi; Chowell, Gerardo 2009 2009-01-01 PMC N PMC7121794 10.1007/978-90-481-2313-1_5 7oxj4coe 0.462763 Li_C_2018, Gong_2013, Lloyd_2009, Sadun_2020 Safi_2011, Clancy_2015, Tennant_2018, Thompson_2019
59 Moser_2015 The Impact of Prior Information on Estimates of Disease Transmissibility Using Bayesian Tools Moser, Carlee B.; Gupta, Mayetri; Archer, Brett N.; White, Laura F. 2015 2015-03-20 COMM-USE N PMC4368801 25793993.0 10.1371/journal.pone.0118762 xjvyyu5b 0.451379 Kucharski_2015, White_2013, Safi_2011, Chong_2017
60 Lu_H_2004 Date of origin of the SARS coronavirus strains Lu, Hongchao; Zhao, Yi; Zhang, Jingfen; Wang, Yuelan; Li, Wei; Zhu, Xiaopeng; Sun, Shiwei; Xu, Jingyi; Ling, Lunjiang; Cai, Lun; Bu, Dongbo; Chen, Runsheng 2004 2004-02-06 PMC N PMC516801 15028113.0 10.1186/1471-2334-4-3 8zwsi4nk 0.444314
61 Black_2013 Estimating a Markovian Epidemic Model Using Household Serial Interval Data from the Early Phase of an Epidemic Black, Andrew J.; Ross, Joshua V. 2013 2013-08-30 None N PMC3758268 24023679.0 10.1371/journal.pone.0073420 ecxcw96m 0.442847 Bocharov_2018, Lloyd_2009, Chowell_2017 Safi_2011, Zimmer_2017, Cotta_2020
62 Park_2020 Reconciling early-outbreak estimates of the basic reproductive number and its uncertainty: framework and applications to the novel coronavirus (SARS-CoV-2) outbreak Sang Woo Park; Benjamin M. Bolker; David Champredon; David J.D. Earn; Michael Li; Joshua S. Weitz; Bryan T. Grenfell; Jonathan Dushoff 2020 2020-02-02 BioRxiv Y 10.1101/2020.01.30.20019877 p5aj5k2g 0.441111 Li_C_2018, O'Dea_2010, Lloyd_2009 Hilton_2020
63 Garske_2007 The Transmissibility of Highly Pathogenic Avian Influenza in Commercial Poultry in Industrialised Countries Garske, Tini; Clarke, Paul; Ghani, Azra C. 2007 2007-04-04 COMM-USE N PMC1831494 17406673.0 10.1371/journal.pone.0000349 x2zq0lnt 0.437593
64 Wang_2004 Simulating the SARS outbreak in Beijing with limited data Wang, Wendi; Ruan, Shigui 2004 2004-04-07 PMC N PMC7134597 15019504.0 10.1016/j.jtbi.2003.11.014 eb8ysg2b 0.436638 Griette_2020, Bifolchi_2013, Renna_2020 Zhang_2005, Zhang_2007, Chowell_2003
65 Cauchemez_2013 Using Routine Surveillance Data to Estimate the Epidemic Potential of Emerging Zoonoses: Application to the Emergence of US Swine Origin Influenza A H3N2v Virus Cauchemez, Simon; Epperson, Scott; Biggerstaff, Matthew; Swerdlow, David; Finelli, Lyn; Ferguson, Neil M. 2013 2013-03-05 COMM-USE N PMC3589342 23472057.0 10.1371/journal.pmed.1001399 16c8dwfq 0.435208
66 Britton_2020 Basic estimation-prediction techniques for Covid-19, and a prediction for Stockholm Tom Britton 2020 2020-04-17 BioRxiv Y 10.1101/2020.04.15.20066050 0fmeu4h4 0.433880 Li_C_2018, Wu_Q_2014, Lauro_2020, Kenah_2012
67 Yong_2016 Dynamical transmission model of MERS-CoV in two areas Yong, Benny; Owen, Livia 2016 2016-02-29 COMM-USE N PMC7108780 10.1063/1.4942993 5po7q64l 0.420202
68 Small_2005 Clustering model for transmission of the SARS virus: application to epidemic control and risk assessment Small, Michael; Tse, C.K. 2005 2005-06-15 PMC N PMC7126158 10.1016/j.physa.2005.01.009 a95hh4yk 0.416039 Li_C_2018, Welch_2011, Wu_Q_2014, Bifolchi_2013, Giardina_2017 Ng_T_2003, Safi_2011, Small_2006, Denphedtnong_2013
69 Meng_2005 Understanding the spatial diffusion process of severe acute respiratory syndrome in Beijing Meng, B.; Wang, J.; Liu, J.; Wu, J.; Zhong, E. 2005 2005-12-31 PMC N PMC7111650 16214187.0 10.1016/j.puhe.2005.02.003 05hcci4l 0.403365 Li_C_2018, Mondor_2012, Wu_Q_2014
70 Wang_2008 Data-driven exploration of ‘spatial pattern-time process-driving forces’ associations of SARS epidemic in Beijing, China Wang, Jin-Feng; Christakos, George; Han, Wei-Guo; Meng, Bin 2008 2008-04-26 NONCOMM N PMC2518065 18441347.0 10.1093/pubmed/fdn023 2nko37oo 0.399942 Li_C_2018, Giardina_2017 Cao_Z_2010
71 Cori_2009 Temporal Variability and Social Heterogeneity in Disease Transmission: The Case of SARS in Hong Kong Cori, Anne; Boëlle, Pierre-Yves; Thomas, Guy; Leung, Gabriel M.; Valleron, Alain-Jacques 2009 2009-08-21 None N PMC2717369 19696879.0 10.1371/journal.pcbi.1000471 mj1lf9qs 0.397660 Li_C_2018, Mondor_2012 Chowell_2015, Safi_2011
72 Lessler_2007 Transmissibility of swine flu at Fort Dix, 1976 Lessler, Justin; Cummings, Derek A.T; Fishman, Steven; Vora, Amit; Burke, Donald S 2007 2007-04-03 PMC N PMC2373398 17412677.0 10.1098/rsif.2007.0228 ow9l3zoj 0.396961
73 Lloyd_2009 Sensitivity of Model-Based Epidemiological Parameter Estimation to Model Assumptions Lloyd, A.L. 2009 2009-01-01 PMC N PMC7121564 10.1007/978-90-481-2313-1_6 kry1sejo 0.395149 Bocharov_2018, Chowell_2017, Zhao_2013 Chowell_2017, Cauchemez_2012, Roques_2020, Zimmer_2017
74 Shen_2011 The nonparametric maximum likelihood estimator for middle-censored data Shen, Pao-Sheng 2011 2011-07-31 PMC N PMC7126554 10.1016/j.jspi.2011.02.014 i12de6f2 0.392447 Höhle_2007, Zhao_2013, Pekalp_2019 Zhao_2013, Soubeyrand_2007, Kenah_2012
75 White_2014 Determining the dynamics of influenza transmission by age White, Laura F; Archer, Brett; Pagano, Marcello 2014 2014-03-21 COMM-USE N PMC3997935 24656239.0 10.1186/1742-7622-11-4 jvdph782 0.387077 Kucharski_2015, Stein_2014
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