| 1 |
Kahn_2018 |
Analyzing Vaccine Trials in Epidemics With Mild and Asymptomatic Infection |
Kahn, Rebecca; Hitchings, Matt; Wang, Rui; Bellan, Steven E; Lipsitch, Marc |
2018 |
2018-10-17 |
PMC |
N |
PMC6357804 |
30329134.0 |
10.1093/aje/kwy239 |
jwzny6vx |
0.726304 |
Höhle_2007, Bifolchi_2013, Lloyd_2009, Cauchemez_2012 |
Kahn_2018 |
| 2 |
Kahn_2018 |
Analyzing Vaccine Trials in Epidemics with Mild and Asymptomatic Infection |
Rebecca Kahn; Matt Hitchings; Rui Wang; Steven Bellan; Marc Lipsitch |
2018 |
2018-04-06 |
BioRxiv |
N |
|
|
10.1101/295337 |
tj1ohvh0 |
0.652214 |
Bifolchi_2013, Höhle_2007, Kenah_2012 |
Kahn_2018 |
| 3 |
Zhang_2018 |
Models of cytokine dynamics in the inflammatory response of viral zoonotic infectious diseases |
Zhang, Wenjing; Jang, Sophia; Jonsson, Colleen B; Allen, Linda J S |
2018 |
2018-06-29 |
PMC |
N |
PMC7108568 |
29961899.0 |
10.1093/imammb/dqy009 |
5igf77tk |
0.643208 |
|
|
| 4 |
Pharaon_2018 |
The Influence Of Social Behavior On Competition Between Virulent Pathogen Strains |
Joe Pharaon; Chris T. Bauch |
2018 |
2018-04-04 |
BioRxiv |
N |
|
|
10.1101/293936 |
6s27v6at |
0.637700 |
Pharaon_2018 |
Pharaon_2018 |
| 5 |
Dallas_2018 |
Experimental evidence of a pathogen invasion threshold |
Dallas, Tad A.; Krkošek, Martin; Drake, John M. |
2018 |
2018-01-24 |
None |
N |
PMC5792953 |
29410876.0 |
10.1098/rsos.171975 |
83hzhgw6 |
0.612911 |
|
|
| 6 |
Pharaon_2018 |
The influence of social behaviour on competition between virulent pathogen strains |
Pharaon, Joe; Bauch, Chris T. |
2018 |
2018-10-14 |
PMC |
N |
PMC7094168 |
29981338.0 |
10.1016/j.jtbi.2018.06.028 |
c6601yxb |
0.610235 |
Pharaon_2018 |
Pharaon_2018, Meehan_2020 |
| 7 |
McLure_2020 |
Some simple rules for estimating reproduction numbers in the presence of reservoir exposure or imported cases |
McLure, Angus; Glass, Kathryn |
2020 |
2020-04-15 |
PMC |
N |
|
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10.1016/j.tpb.2020.04.002 |
9shnr4ph |
0.545068 |
Li_C_2018, O'Dea_2010, Welch_2011 |
|
| 8 |
Lei_C_2013 |
The spreading frontiers of avian-human influenza described by the free boundary |
Lei, ChengXia; Kim, KwangIk; Lin, ZhiGui |
2013 |
2013-05-29 |
PMC |
N |
PMC7089280 |
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10.1007/s11425-013-4652-7 |
uuw3s5d5 |
0.541202 |
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| 9 |
Nathanson_2005 |
Virus perpetuation in populations: biological variables that determine persistence or eradication |
Nathanson, N. |
2005 |
2005-01-01 |
PMC |
N |
PMC7121194 |
16355865.0 |
10.1007/3-211-29981-5_2 |
hm36pepp |
0.529420 |
|
|
| 10 |
Martens_2011 |
Interfering Waves of Adaptation Promote Spatial Mixing |
Martens, Erik A.; Hallatschek, Oskar |
2011 |
2011-11-23 |
PMC |
N |
PMC3213383 |
21900264.0 |
10.1534/genetics.111.130112 |
hzu4c8ls |
0.518301 |
Li_C_2018, Welch_2011 |
|
| 11 |
Pinsent_2017 |
The persistence of multiple strains of avian influenza in live bird markets |
Pinsent, Amy; Pepin, Kim M.; Zhu, Huachen; Guan, Yi; White, Michael T.; Riley, Steven |
2017 |
2017-12-06 |
None |
N |
PMC5740266 |
29212718.0 |
10.1098/rspb.2017.0715 |
o6pue57u |
0.506802 |
Li_C_2018, Welch_2011, O'Dea_2010 |
JEONG_2017 |
| 12 |
Schreiber_2016 |
Cross-scale dynamics and the evolutionary emergence of infectious diseases |
Sebastian J. Schreiber; Ruian Ke; Claude Loverdo; Miran Park; Priyanna Ahsan; James O. Lloyd-Smith |
2016 |
2016-07-29 |
BioRxiv |
N |
|
|
10.1101/066688 |
hain3be0 |
0.492613 |
|
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| 13 |
Nurtay_2019 |
Theoretical conditions for the coexistence of viral strains with differences in phenotypic traits: a bifurcation analysis |
Nurtay, Anel; Hennessy, Matthew G.; Sardanyés, Josep; Alsedà, Lluís; Elena, Santiago F. |
2019 |
2019-01-09 |
COMM-USE |
N |
PMC6366233 |
30800366.0 |
10.1098/rsos.181179 |
xeq4yix4 |
0.489183 |
Welch_2011, Bifolchi_2013 |
|
| 14 |
Allen_2009 |
A habitat-based model for the spread of hantavirus between reservoir and spillover species |
Allen, Linda J.S.; Wesley, Curtis L.; Owen, Robert D.; Goodin, Douglas G.; Koch, David; Jonsson, Colleen B.; Chu, Yong-Kyu; Shawn Hutchinson, J.M.; Paige, Robert L. |
2009 |
2009-10-21 |
None |
N |
PMC2746865 |
19616014.0 |
10.1016/j.jtbi.2009.07.009 |
tvwlvoz6 |
0.480218 |
Bifolchi_2013, Giardina_2017, Li_C_2018 |
|
| 15 |
Woolhouse_2008 |
Temporal trends in the discovery of human viruses |
Woolhouse, Mark E.J; Howey, Richard; Gaunt, Eleanor; Reilly, Liam; Chase-Topping, Margo; Savill, Nick |
2008 |
2008-05-27 |
COMM-USE |
N |
PMC2475551 |
18505720.0 |
10.1098/rspb.2008.0294 |
5blxgsfi |
0.451348 |
|
|
| 16 |
Camacho_2011 |
Explaining rapid reinfections in multiple-wave influenza outbreaks: Tristan da Cunha 1971 epidemic as a case study |
Camacho, Anton; Ballesteros, Sébastien; Graham, Andrea L.; Carrat, Fabrice; Ratmann, Oliver; Cazelles, Bernard |
2011 |
2011-12-22 |
COMM-USE |
N |
PMC3203494 |
21525058.0 |
10.1098/rspb.2011.0300 |
12y420k8 |
0.446278 |
|
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| 17 |
Khan_2020 |
Modeling the dynamics of novel coronavirus (2019-nCov) with fractional derivative |
Khan, Muhammad Altaf; Atangana, Abdon |
2020 |
2020-03-14 |
PMC |
Y |
|
|
10.1016/j.aej.2020.02.033 |
ujyukdqu |
0.417741 |
Zheng_2020, Li_C_2018, Bocharov_2018 |
|
| 18 |
Voinson_2018 |
Stochastic dynamics of an epidemic with recurrent spillovers from an endemic reservoir |
Voinson, Marina; Alvergne, Alexandra; Billiard, Sylvain; Smadi, Charline |
2018 |
2018-11-14 |
PMC |
N |
PMC7094102 |
30121292.0 |
10.1016/j.jtbi.2018.08.017 |
g4bsul8u |
0.402573 |
|
|
| 19 |
Borovkov_2012 |
High host density favors greater virulence: a model of parasite–host dynamics based on multi-type branching processes |
Borovkov, K.; Day, R.; Rice, T. |
2012 |
2012-03-30 |
PMC |
N |
PMC7080088 |
22461126.0 |
10.1007/s00285-012-0526-9 |
zbfd03f6 |
0.390673 |
|
|
| 20 |
Barbosa_2009 |
Health of Antarctic birds: a review of their parasites, pathogens and diseases |
Barbosa, Andrés; Palacios, María José |
2009 |
2009-05-12 |
PMC |
N |
PMC7087846 |
|
10.1007/s00300-009-0640-3 |
ps4gcy9o |
0.390269 |
|
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| 21 |
Upadhyay_2008 |
Modeling the spread of bird flu and predicting outbreak diversity |
Upadhyay, Ranjit Kumar; Kumari, Nitu; Rao, V. Sree Hari |
2008 |
2008-09-30 |
PMC |
N |
PMC7105027 |
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10.1016/j.nonrwa.2007.04.009 |
lw0cv74b |
0.373981 |
|
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| 22 |
Ikeda_2014 |
Improving the estimation of the death rate of infected cells from time course data during the acute phase of virus infections: application to acute HIV-1 infection in a humanized mouse model |
Ikeda, Hiroki; de Boer, Rob J; Sato, Kei; Morita, Satoru; Misawa, Naoko; Koyanagi, Yoshio; Aihara, Kazuyuki; Iwami, Shingo |
2014 |
2014-05-21 |
COMM-USE |
N |
PMC4035760 |
24885827.0 |
10.1186/1742-4682-11-22 |
a89zj5mh |
0.371890 |
Bifolchi_2013, Welch_2011, Chowell_2017 |
|
| 23 |
O’Regan_2012 |
Chaos in a seasonally perturbed SIR model: avian influenza in a seabird colony as a paradigm |
O’Regan, Suzanne M.; Kelly, Thomas C.; Korobeinikov, Andrei; O’Callaghan, Michael J. A.; Pokrovskii, Alexei V.; Rachinskii, Dmitrii |
2012 |
2012-05-31 |
PMC |
N |
PMC7080170 |
22648788.0 |
10.1007/s00285-012-0550-9 |
g3955efe |
0.358670 |
Li_C_2018, Bifolchi_2013, Bocharov_2018, Li_K_2011 |
Samanta_2020, Zhang_2018 |
| 24 |
Meehan_2020 |
On the probability of strain invasion in endemic settings: Accounting for individual heterogeneity and control in multi-strain dynamics |
Meehan, Michael T.; Cope, Robert C.; McBryde, Emma S. |
2020 |
2020-02-21 |
PMC |
N |
PMC7094110 |
31816294.0 |
10.1016/j.jtbi.2019.110109 |
xum44wt7 |
0.357990 |
|
Safi_2011, Chen_2019 |
| 25 |
Alexander_2010 |
Risk factors for the evolutionary emergence of pathogens |
Alexander, H. K.; Day, T. |
2010 |
2010-10-06 |
COMM-USE |
N |
PMC2935601 |
20410190.0 |
10.1098/rsif.2010.0123 |
r90ty04i |
0.352754 |
|
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| 26 |
Li_R_2017 |
Inference and forecast of H7N9 influenza in China, 2013 to 2015 |
Li, Ruiyun; Bai, Yuqi; Heaney, Alex; Kandula, Sasikiran; Cai, Jun; Zhao, Xuyi; Xu, Bing; Shaman, Jeffrey |
2017 |
2017-02-16 |
PMC |
N |
PMC5322186 |
28230525.0 |
10.2807/1560-7917.es.2017.22.7.30462 |
dv3o8dl3 |
0.349942 |
|
|
| 27 |
Yano_2017 |
Kinetic Modeling of Local Epidemic Spread and Its Simulation |
Yano, Ryosuke |
2017 |
2017-03-16 |
PMC |
N |
PMC7088009 |
|
10.1007/s10915-017-0408-9 |
8scg3uer |
0.339934 |
Li_C_2018, Bifolchi_2013, Gong_2013, Welch_2011 |
Tuckwell_2007, Imran_2018, Zhang_2018 |
| 28 |
Chen_2020 |
A mathematical model for simulating the transmission of Wuhan novel Coronavirus |
Tianmu Chen; Jia Rui; Qiupeng Wang; Zeyu Zhao; Jing-An Cui; Ling Yin |
2020 |
2020-01-19 |
BioRxiv |
Y |
|
|
10.1101/2020.01.19.911669 |
v4mbry22 |
0.339594 |
|
Yong_2016 |
| 29 |
Brienen_2010 |
The Effect of Mask Use on the Spread of Influenza During a Pandemic |
Brienen, Nicole C. J.; Timen, Aura; Wallinga, Jacco; Van Steenbergen, Jim E.; Teunis, Peter F. M. |
2010 |
2010-05-20 |
PMC |
N |
PMC7169241 |
20497389.0 |
10.1111/j.1539-6924.2010.01428.x |
mfb2or98 |
0.337675 |
Wu_Q_2014 |
|
| 30 |
Pinky_2019 |
Effect of stochasticity on coinfection dynamics of respiratory viruses |
Pinky, Lubna; Gonzalez-Parra, Gilberto; Dobrovolny, Hana M. |
2019 |
2019-04-16 |
COMM-USE |
N |
PMC6469119 |
30991939.0 |
10.1186/s12859-019-2793-6 |
vyk607in |
0.333869 |
Bifolchi_2013, O'Dea_2010, Giardina_2017, Bocharov_2018 |
Zhang_2018 |
| 31 |
Nguyen_2019 |
Simulation models for transmission of health care–associated infection: A systematic review |
Nguyen, Le Khanh Ngan; Megiddo, Itamar; Howick, Susan |
2019 |
2019-12-18 |
PMC |
N |
|
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10.1016/j.ajic.2019.11.005 |
5ktlba3p |
0.322752 |
|
Raja_Sekhara_Rao_2015, Safi_2011 |
| 32 |
Watanabe_2010 |
Development of a Dose‐Response Model for SARS Coronavirus |
Watanabe, Toru; Bartrand, Timothy A.; Weir, Mark H.; Omura, Tatsuo; Haas, Charles N. |
2010 |
2010-05-20 |
PMC |
N |
PMC7169223 |
20497390.0 |
10.1111/j.1539-6924.2010.01427.x |
6izmhty0 |
0.322308 |
Li_C_2018, Welch_2011 |
|
| 33 |
Akhmetzhanov_2019 |
Quantifying the seasonal drivers of transmission for Lassa fever in Nigeria |
Akhmetzhanov, Andrei R.; Asai, Yusuke; Nishiura, Hiroshi |
2019 |
2019-06-24 |
COMM-USE |
N |
PMC6553602 |
31056054.0 |
10.1098/rstb.2018.0268 |
a1ks06ge |
0.321542 |
|
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| 34 |
Wells_2018 |
Individual and temporal variation in pathogen load predicts long-term impacts of an emerging infectious disease |
Konstans Wells; Rodrigo K. Hamede; Menna E. Jones; Paul A. Hohenlohe; Andrew Storfer; Hamish I. McCallum |
2018 |
2018-08-15 |
BioRxiv |
N |
|
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10.1101/392324 |
5isns5ka |
0.313428 |
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| 35 |
Lessler_2007 |
Transmissibility of swine flu at Fort Dix, 1976 |
Lessler, Justin; Cummings, Derek A.T; Fishman, Steven; Vora, Amit; Burke, Donald S |
2007 |
2007-04-03 |
PMC |
N |
PMC2373398 |
17412677.0 |
10.1098/rsif.2007.0228 |
ow9l3zoj |
0.306626 |
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| 36 |
Vegvari_2016 |
How Can Viral Dynamics Models Inform Endpoint Measures in Clinical Trials of Therapies for Acute Viral Infections? |
Vegvari, Carolin; Hadjichrysanthou, Christoforos; Cauët, Emilie; Lawrence, Emma; Cori, Anne; de Wolf, Frank; Anderson, Roy M. |
2016 |
2016-07-01 |
COMM-USE |
N |
PMC4930163 |
27367230.0 |
10.1371/journal.pone.0158237 |
ghknk1tj |
0.302280 |
Lloyd_2009, O'Dea_2010, Wu_Q_2014 |
|