Topic 11 -- Abstracts with Biological Entities (English) - 75 Topics / Sub-Topic Model 55 - 15 Topics

cite ad title authors publish year publish time dataset abstract mentions covid pmcid pubmed id doi cord uid topic weight Similarity scispacy Similarity specter
1 Vidal-Albalat_2016 Chapter 6 Natural Products as Cathepsin Inhibitors Vidal-Albalat, Andreu; González, Florenci V. 2016 2016-12-31 PMC N PMC7158365 10.1016/b978-0-444-63749-9.00006-2 3pi2aimv 0.824075 Ramajayam_2010, Saura_1999, Lindner_2007 Dana_2020, Grazioso_2012
2 Salomon_2018 Aminobenzosuberone Scaffold as a Modular Chemical Tool for the Inhibition of Therapeutically Relevant M1 Aminopeptidases Salomon, Emmanuel; Schmitt, Marjorie; Marapaka, Anil Kumar; Stamogiannos, Athanasios; Revelant, Germain; Schmitt, Céline; Alavi, Sarah; Florent, Isabelle; Addlagatta, Anthony; Stratikos, Efstratios; Tarnus, Céline; Albrecht, Sébastien 2018 2018-10-11 None N PMC6222927 30314342.0 10.3390/molecules23102607 70ie4jqf 0.769834 Yang_2010, Schlieker_2007, Mönttinen_2019, Saura_1999 Grazioso_2012, Joshi_2017
3 Carrell_1985 α 1-Antitrypsin and the serpins: variation and countervariation Carrell, Robin; Travis, James 1985 1985-01-31 PMC N 10.1016/0968-0004(85)90011-8 muwaixwj 0.766005
4 Kim_J_2020 Cooperative enzymatic control of N-acyl amino acids by PM20D1 and FAAH Kim, Joon T; Terrell, Stephanie M; Li, Veronica L; Wei, Wei; Fischer, Curt R; Long, Jonathan Z 2020 2020-04-09 COMM-USE N PMC7145423 32271712.0 10.7554/elife.55211 79lm053o 0.653584 Grazioso_2012, Buller_2012
5 Peer_2011 The role of multifunctional M1 metallopeptidases in cell cycle progression Peer, Wendy Ann 2011 2011-01-21 PMC N PMC3091800 21258033.0 10.1093/aob/mcq265 q5pcqpsl 0.609067 Deng_2019
6 Laporte_2017 Airway proteases: an emerging drug target for influenza and other respiratory virus infections Laporte, Manon; Naesens, Lieve 2017 2017-06-30 PMC N PMC7102789 28414992.0 10.1016/j.coviro.2017.03.018 3jda0k2u 0.597459 van_der_Linden_2014
7 Chuang_2018 6-Thioguanine is a noncompetitive and slow binding inhibitor of human deubiquitinating protease USP2 Chuang, Shang-Ju; Cheng, Shu-Chun; Tang, Hui-Chi; Sun, Chiao-Yin; Chou, Chi-Yuan 2018 2018-02-15 COMM-USE N PMC5814560 29449607.0 10.1038/s41598-018-21476-w eqhgbxqq 0.594674 Yan_J_2007 Deng_2019, Grazioso_2012
8 Lee_J_2015 Facilitated Tau Degradation by USP14 Aptamers via Enhanced Proteasome Activity Lee, Jung Hoon; Shin, Seung Kyun; Jiang, Yanxialei; Choi, Won Hoon; Hong, Chaesun; Kim, Dong-Eun; Lee, Min Jae 2015 2015-06-04 COMM-USE N PMC4455164 26041011.0 10.1038/srep10757 cnvigvmv 0.579214 Yan_J_2007 Deng_2019
9 Hassink_2005 TEB4 is a C4HC3 RING finger-containing ubiquitin ligase of the endoplasmic reticulum Hassink, Gerco; Kikkert, Marjolein; Voorden, Sjaak van; Lee, Shiow-Ju; Spaapen, Robbert; Laar, Theo van; Coleman, Catherine S.; Bartee, Eric; Früh, Klaus; Chau, Vincent; Wiertz, Emmanuel 2005 2005-05-24 PMC N PMC1138973 15673284.0 10.1042/bj20041241 go7o1827 0.576683 Sato_2019, Yan_J_2007 Sato_2019
10 Joshi_2017 The Rational Design of Therapeutic Peptides for Aminopeptidase N using a Substrate-Based Approach Joshi, Shilvi; Chen, Lang; Winter, Michael B.; Lin, Yi-Lun; Yang, Yang; Shapovalova, Mariya; Smith, Paige M.; Liu, Chang; Li, Fang; LeBeau, Aaron M. 2017 2017-05-02 COMM-USE N PMC5431086 28465619.0 10.1038/s41598-017-01542-5 0pmo3opx 0.571243 van_der_Linden_2014, Wei_P_2006, Akaji_2008
11 Rawlings_1994 [2] Families of serine peptidases Rawlings, Neil D.; Barrett, Alan J. 1994 1994-12-31 PMC N 10.1016/0076-6879(94)44004-2 k1csodeb 0.569925 Mönttinen_2019, Rawlings_1994, Schlieker_2007 Myllykoski_2017
12 Antalis_2010 The Cutting Edge: Membrane Anchored Serine Protease Activities in the Pericellular Microenvironment Antalis, Toni M.; Buzza, Marguerite S.; Hodge, Kathryn M.; Hooper, John D.; Netzel-Arnett, Sarah 2010 2010-05-27 PMC N PMC3680374 20507279.0 10.1042/bj20100046 318vtzk0 0.560837 Böttcher-Friebertshäuser_2018
13 Ehrnhoefer_2011 A Quantitative Method for the Specific Assessment of Caspase-6 Activity in Cell Culture Ehrnhoefer, Dagmar E.; Skotte, Niels H.; Savill, Jane; Nguyen, Yen T. N.; Ladha, Safia; Cao, Li-Ping; Dullaghan, Edie; Hayden, Michael R. 2011 2011-11-29 COMM-USE N PMC3226564 22140457.0 10.1371/journal.pone.0027680 73hw8922 0.544404 van_der_Linden_2014
14 Subramanian_2009 Hemoglobin Cleavage Site-Specificity of the Plasmodium falciparum Cysteine Proteases Falcipain-2 and Falcipain-3 Subramanian, Shoba; Hardt, Markus; Choe, Youngchool; Niles, Richard K.; Johansen, Eric B.; Legac, Jennifer; Gut, Jiri; Kerr, Iain D.; Craik, Charles S.; Rosenthal, Philip J. 2009 2009-04-09 COMM-USE N PMC2663817 19357776.0 10.1371/journal.pone.0005156 zvs5qe8x 0.535613 Yang_2010, Saura_1999 Grazioso_2012
15 Böttcher-Friebertshäuser_2018 Membrane-Anchored Serine Proteases: Host Cell Factors in Proteolytic Activation of Viral Glycoproteins Böttcher-Friebertshäuser, Eva 2018 2018-02-16 PMC N PMC7122464 10.1007/978-3-319-75474-1_8 8myzo7hg 0.523733 Yang_2010, Saura_1999 Antalis_2010
16 Srivastava_2008 Proteolytic processing of a precursor protein for a growth-promoting peptide by a subtilisin serine protease in Arabidopsis Srivastava, Renu; Liu, Jian-Xiang; Howell, Stephen H 2008 2008-08-01 COMM-USE N PMC2667306 18643977.0 10.1111/j.1365-313x.2008.03598.x vg57cnqw 0.504408 Chen_2015, Yang_2010 Denison_1992
17 Drinkwater_2017 M1 aminopeptidases as drug targets: broad applications or therapeutic niche? Drinkwater, Nyssa; Lee, Jisook; Yang, Wei; Malcolm, Tess R.; McGowan, Sheena 2017 2017-02-03 PMC N PMC7164018 28075056.0 10.1111/febs.14009 nmf5quab 0.503471
18 Grazioso_2012 Mechanism of falcipain-2 inhibition by α,β-unsaturated benzo[1,4]diazepin-2-one methyl ester Grazioso, Giovanni; Legnani, Laura; Toma, Lucio; Ettari, Roberta; Micale, Nicola; De Micheli, Carlo 2012 2012-09-11 PMC N PMC7088093 22965332.0 10.1007/s10822-012-9596-4 et00ovrr 0.472156 Basak_2009
19 Schomburg_2001 Molecular characterization of a puromycin‐insensitive leucyl‐specific aminopeptidase, PILS‐AP Schomburg, Lutz; Kollmus, Heike; Friedrichsen, Sönke; Bauer, Karl 2001 2001-12-25 PMC N PMC7164119 10824104.0 10.1046/j.1432-1327.2000.01348.x rle7t4vg 0.449113
20 Artavanis‐Tsakonas_2006 Identification by functional proteomics of a deubiquitinating/deNeddylating enzyme in Plasmodium falciparum Artavanis‐Tsakonas, Katerina; Misaghi, Shahram; Comeaux, Christy A.; Catic, Andre; Spooner, Eric; Duraisingh, Manoj T.; Ploegh, Hidde L. 2006 2006-08-02 PMC N PMC7168409 16925553.0 10.1111/j.1365-2958.2006.05307.x 4wjuuage 0.435258
21 Rawlings_1994 [32] Families of cysteine peptidases Rawlings, Neil D.; Barrett, Alan J. 1994 1994-12-31 PMC N 7845226.0 10.1016/0076-6879(94)44034-4 8opigfsg 0.434313 Schlieker_2007, Rawlings_1994
22 Basak_2009 A Novel Enediynyl Peptide Inhibitor of Furin That Blocks Processing of proPDGF-A, B and proVEGF-C Basak, Ajoy; Khatib, Abdel-Majid; Mohottalage, Dayani; Basak, Sarmistha; Kolajova, Maria; Bag, Subhendu Sekhar; Basak, Amit 2009 2009-11-26 COMM-USE N PMC2778948 19956642.0 10.1371/journal.pone.0007700 jps5pj7x 0.433802 Grazioso_2012, Kuo_C_2008
23 Raghav_2015 Chalcones, semicarbazones and pyrazolines as inhibitors of cathepsins B, H and L Raghav, Neera; Kaur, Ravinder 2015 2015-09-30 PMC N PMC7124378 26193682.0 10.1016/j.ijbiomac.2015.07.029 g4omlaht 0.428543 Pager_2006, Yang_2010, Saura_1999, Vidal-Albalat_2016 Grazioso_2012, Vidal-Albalat_2016
24 Renatus_2006 Structural Basis of Ubiquitin Recognition by the Deubiquitinating Protease USP2 Renatus, Martin; Parrado, Shirley Gil; D'Arcy, Allan; Eidhoff, Ulf; Gerhartz, Bernd; Hassiepen, Ulrich; Pierrat, Benoit; Riedl, Ralph; Vinzenz, Daniela; Worpenberg, Susanne; Kroemer, Markus 2006 2006-08-31 PMC N PMC7126176 16905103.0 10.1016/j.str.2006.06.012 9a7hgf71 0.413785 Yan_J_2007, Sato_2019 Sato_2019, Deng_2019, Basters_2017
25 Lockwood_2019 Biguanide is a modifiable pharmacophore for recruitment of endogenous Zn(2+) to inhibit cysteinyl cathepsins: review and implications Lockwood, Thomas D. 2019 2019-05-01 COMM-USE N PMC6647370 31044334.0 10.1007/s10534-019-00197-1 pt33u9t1 0.406061 Sato_2019, Schlieker_2007 Grazioso_2012, Basak_2009, Buller_2012
26 Seneci_2015 Chapter 3 Targeting Proteasomal Degradation of Soluble, Misfolded Proteins Ubi Major… Seneci, Pierfausto 2015 2015-12-31 PMC N PMC7150093 10.1016/b978-0-12-801944-3.00003-5 to6v3cft 0.382750 Lindner_2007 Sato_2019
27 Rawlings_2009 A large and accurate collection of peptidase cleavages in the MEROPS database Rawlings, Neil D. 2009 2009-11-02 NONCOMM N PMC2790309 20157488.0 10.1093/database/bap015 0rq0wdpq 0.373441 Yin_J_2007
28 Turk_2012 Cysteine cathepsins: From structure, function and regulation to new frontiers Turk, Vito; Stoka, Veronika; Vasiljeva, Olga; Renko, Miha; Sun, Tao; Turk, Boris; Turk, Dušan 2012 2012-01-31 PMC N PMC7105208 22024571.0 10.1016/j.bbapap.2011.10.002 513go1km 0.355301 Dana_2020, Buller_2012
29 Chou_2008 Thiopurine analogues inhibit papain-like protease of severe acute respiratory syndrome coronavirus Chou, Chi-Yuan; Chien, Chia-Hui; Han, Yu-San; Prebanda, Mojca Trstenjak; Hsieh, Hsing-Pang; Turk, Boris; Chang, Gu-Gang; Chen, Xin 2008 2008-04-15 PMC N PMC7092826 18313035.0 10.1016/j.bcp.2008.01.005 5szqfufh 0.352509 Zhu_L_2011
30 Wang_2015 Cathepsin L Mediates the Degradation of Novel APP C-Terminal Fragments Wang, Haizhi; Sang, Nianli; Zhang, Can; Raghupathi, Ramesh; Tanzi, Rudolph E.; Saunders, Aleister 2015 2015-04-28 PMC N PMC4521409 25910068.0 10.1021/acs.biochem.5b00329 esns9xk6 0.342169 Chen_2015 Basak_2009
31 Mucha_2010 Metallo-aminopeptidase inhibitors Mucha, Artur; Drag, Marcin; Dalton, John P.; Kafarski, Paweł 2010 2010-11-30 PMC N PMC7117057 20457213.0 10.1016/j.biochi.2010.04.026 do0px1gq 0.304513 Myllykoski_2017, Joshi_2017