| 1 |
Morse_2015 |
Diversification of β-Augmentation Interactions between CDI Toxin/ Immunity Proteins |
Morse, Robert P.; Willett, Julia L.E.; Johnson, Parker M.; Zheng, Mandy; Credali, Alfredo; Iniguez, Angelina; Nowick, James S.; Hayes, Christopher S.; Goulding, Celia W. |
2015 |
2015-11-01 |
PMC |
N |
PMC4658667 |
26449640.0 |
10.1016/j.jmb.2015.09.020 |
jxrdp06o |
0.793092 |
|
Michalska_2018, van_der_Linden_2014 |
| 2 |
Michalska_2018 |
Functional plasticity of antibacterial EndoU toxins |
Michalska, Karolina; Nhan, Dinh Quan; Willett, Julia L. E.; Stols, Lucy M.; Eschenfeldt, William H.; Jones, Allison M.; Nguyen, Josephine Y.; Koskiniemi, Sanna; Low, David A.; Goulding, Celia W.; Joachimiak, Andrzej; Hayes, Christopher S. |
2018 |
2018-08-01 |
PMC |
N |
PMC6173971 |
29923643.0 |
10.1111/mmi.14007 |
zbm8uy0z |
0.743092 |
|
van_der_Linden_2014, Deng_2019 |
| 3 |
Zhang_2011 |
A novel immunity system for bacterial nucleic acid degrading toxins and its recruitment in various eukaryotic and DNA viral systems |
Zhang, Dapeng; Iyer, Lakshminarayan M.; Aravind, L. |
2011 |
2011-02-08 |
NONCOMM |
N |
PMC3113570 |
21306995.0 |
10.1093/nar/gkr036 |
klsl1nzn |
0.729598 |
|
Michalska_2018, van_der_Linden_2014 |
| 4 |
Mönttinen_2019 |
Structural comparison strengthens the higher-order classification of proteases related to chymotrypsin |
Mönttinen, Heli A. M.; Ravantti, Janne J.; Poranen, Minna M. |
2019 |
2019-05-17 |
COMM-USE |
N |
PMC6524800 |
31100077.0 |
10.1371/journal.pone.0216659 |
h11kclwx |
0.728285 |
Gorbalenya_1991 |
Tsai_2010, Rozanov_1995 |
| 5 |
Mistry_2006 |
IgA1 protease |
Mistry, Dippica; Stockley, Robert A. |
2006 |
2006-12-31 |
PMC |
N |
PMC7108436 |
16293440.0 |
10.1016/j.biocel.2005.10.005 |
6s0peq5f |
0.718176 |
|
Böttcher-Friebertshäuser_2018 |
| 6 |
Rao_T_2018 |
Importance of homo-dimerization of Fanconi-associated nuclease 1 in DNA flap cleavage |
Rao, Timsi; Longerich, Simonne; Zhao, Weixing; Aihara, Hideki; Sung, Patrick; Xiong, Yong |
2018 |
2018-04-30 |
PMC |
N |
PMC7105229 |
29518739.0 |
10.1016/j.dnarep.2018.02.007 |
rzw8hwzw |
0.690683 |
Sato_2019 |
Zhao_2014, Sato_2019, Kanitz_2019 |
| 7 |
Huang_2016 |
NMR assignments of the macro domain from Middle East respiratory syndrome coronavirus (MERS-CoV) |
Huang, Yi-Ping; Cho, Chao-Cheng; Chang, Chi-Fon; Hsu, Chun-Hua |
2016 |
2016-03-18 |
PMC |
N |
PMC7091117 |
26993639.0 |
10.1007/s12104-016-9676-9 |
qgklt8wa |
0.646765 |
|
Lei_J_2014 |
| 8 |
Makrynitsa_2019 |
Conformational plasticity of the VEEV macro domain is important for binding of ADP-ribose |
Makrynitsa, Garyfallia I.; Ntonti, Dioni; Marousis, Konstantinos D.; Birkou, Maria; Matsoukas, Minos-Timotheos; Asami, Sam; Bentrop, Detlef; Papageorgiou, Nicolas; Canard, Bruno; Coutard, Bruno; Spyroulias, Georgios A. |
2019 |
2019-04-01 |
PMC |
N |
PMC7111667 |
30825649.0 |
10.1016/j.jsb.2019.02.008 |
euf4sv76 |
0.645274 |
|
Hu_X_2016 |
| 9 |
Neuvonen_2009 |
Differential Activities of Cellular and Viral Macro Domain Proteins in Binding of ADP-Ribose Metabolites |
Neuvonen, Maarit; Ahola, Tero |
2009 |
2009-01-09 |
PMC |
N |
PMC7094737 |
18983849.0 |
10.1016/j.jmb.2008.10.045 |
z4d33odb |
0.645234 |
|
|
| 10 |
Dang_2016 |
Characterization of Rv0888, a Novel Extracellular Nuclease from Mycobacterium tuberculosis |
Dang, Guanghui; Cao, Jun; Cui, Yingying; Song, Ningning; Chen, Liping; Pang, Hai; Liu, Siguo |
2016 |
2016-01-08 |
COMM-USE |
N |
PMC4733049 |
26742696.0 |
10.1038/srep19033 |
hx7r6kaq |
0.635514 |
|
van_der_Linden_2014, Michalska_2018 |
| 11 |
Catic_2007 |
ElaD, a Deubiquitinating Protease Expressed by E. coli |
Catic, André; Misaghi, Shahram; Korbel, Gregory A.; Ploegh, Hidde L. |
2007 |
2007-04-18 |
COMM-USE |
N |
PMC1847702 |
17440617.0 |
10.1371/journal.pone.0000381 |
s4y6uxsb |
0.627607 |
|
Mielech_2014, Deng_2019, Catic_2007, Yu_L_2017 |
| 12 |
Neer_1987 |
Genes for two homologous G-protein α subunits map to different human chromosomes |
Neer, Eva J.; Michel, Thomas; Eddy, Roger; Shows, Thomas; Seidman, J. G. |
1987 |
1987-01-01 |
PMC |
N |
PMC7087866 |
2824334.0 |
10.1007/bf00284481 |
3ttlrmbx |
0.598166 |
|
|
| 13 |
Cho_C_2016 |
Macro Domain from Middle East Respiratory Syndrome Coronavirus (MERS-CoV) Is an Efficient ADP-ribose Binding Module: CRYSTAL STRUCTURE AND BIOCHEMICAL STUDIES |
Cho, Chao-Cheng; Lin, Meng-Hsuan; Chuang, Chien-Ying; Hsu, Chun-Hua |
2016 |
2016-01-05 |
PMC |
N |
PMC4777827 |
26740631.0 |
10.1074/jbc.m115.700542 |
uq2idlca |
0.541978 |
|
Saikatendu_2005 |
| 14 |
Wlodawer_2003 |
A model of tripeptidyl-peptidase I (CLN2), a ubiquitous and highly conserved member of the sedolisin family of serine-carboxyl peptidases |
Wlodawer, Alexander; Durell, Stewart R; Li, Mi; Oyama, Hiroshi; Oda, Kohei; Dunn, Ben M |
2003 |
2003-11-11 |
PMC |
N |
PMC280685 |
14609438.0 |
10.1186/1472-6807-3-8 |
5o38ihe0 |
0.503785 |
|
Basak_2009 |
| 15 |
Chan_2015 |
One cannot rule them all: Are bacterial toxins-antitoxins druggable? |
Chan, Wai Ting; Balsa, Dolors; Espinosa, Manuel |
2015 |
2015-03-21 |
NONCOMM |
N |
PMC4487406 |
25796610.0 |
10.1093/femsre/fuv002 |
68an60qu |
0.472216 |
|
Michalska_2018 |
| 16 |
Park_2009 |
The nsP3 macro domain is important for Sindbis virus replication in neurons and neurovirulence in mice |
Park, Eunhye; Griffin, Diane E. |
2009 |
2009-06-05 |
None |
N |
PMC2683903 |
19395054.0 |
10.1016/j.virol.2009.03.031 |
ikikdmjw |
0.471692 |
Yang_2010 |
|
| 17 |
Ge_H_2013 |
Crystal structure of wild-type and mutant human Ap4A hydrolase |
Ge, Honghua; Chen, Xiaofang; Yang, Weili; Niu, Liwen; Teng, Maikun |
2013 |
2013-03-01 |
PMC |
N |
PMC7092880 |
23384440.0 |
10.1016/j.bbrc.2013.01.095 |
yrl35s0k |
0.460328 |
Sato_2019, Schlieker_2007 |
Myllykoski_2017, Someya_2008, Brandmann_2015 |
| 18 |
De_Ferrari_2014 |
From sequence to enzyme mechanism using multi-label machine learning |
De Ferrari, Luna; Mitchell, John BO |
2014 |
2014-05-19 |
COMM-USE |
N |
PMC4229970 |
24885296.0 |
10.1186/1471-2105-15-150 |
yjrs7c38 |
0.439509 |
|
Myllykoski_2017, Tremblay-Létourneau_2011 |
| 19 |
Worrall_2007 |
Information available at cut rates: structure and mechanism of ribonucleases |
Worrall, Jonathan AR; Luisi, Ben F |
2007 |
2007-02-28 |
PMC |
N |
PMC7125677 |
17189683.0 |
10.1016/j.sbi.2006.12.001 |
x9q7dwc4 |
0.434029 |
|
Myllykoski_2017, Renzi_2006, Buller_2012 |
| 20 |
Saikatendu_2005 |
Structural Basis of Severe Acute Respiratory Syndrome Coronavirus ADP-Ribose-1″-Phosphate Dephosphorylation by a Conserved Domain of nsP3 |
Saikatendu, Kumar Singh; Joseph, Jeremiah S.; Subramanian, Vanitha; Clayton, Tom; Griffith, Mark; Moy, Kin; Velasquez, Jeffrey; Neuman, Benjamin W.; Buchmeier, Michael J.; Stevens, Raymond C.; Kuhn, Peter |
2005 |
2005-11-30 |
PMC |
N |
PMC7126892 |
16271890.0 |
10.1016/j.str.2005.07.022 |
6fsz9iy7 |
0.433027 |
|
|
| 21 |
Littler_2020 |
Crystal structure of the SARS-CoV-2 non-structural protein 9, Nsp9 |
Dene Littler; Benjamin Gully; Rhys N Colson; Jamie Rossjohn |
2020 |
2020-03-30 |
BioRxiv |
Y |
|
|
10.1101/2020.03.28.013920 |
beoseizn |
0.422063 |
|
|
| 22 |
Lyu_S_2019 |
Complete genome sequence and analysis of a new lethal arterivirus, Trionyx sinensis hemorrhagic syndrome virus (TSHSV), amplified from an infected Chinese softshell turtle |
Lyu, Sunjian; Yuan, Xuemei; Zhang, Haiqi; Shi, Weida; Hang, Xiaoying; Liu, Li; Cao, Zheng; Wu, Yinglei |
2019 |
2019-07-03 |
PMC |
N |
PMC7087228 |
31270606.0 |
10.1007/s00705-019-04324-8 |
b105t23k |
0.397533 |
|
|
| 23 |
Denesyuk_2020 |
NBCZone: Universal three-dimensional construction of eleven amino acids near the catalytic nucleophile and base in the superfamily of (chymo)trypsin-like serine fold proteases |
Denesyuk, Alexander I.; Johnson, Mark S.; Salo-Ahen, Outi M.H.; Uversky, Vladimir N.; Denessiouk, Konstantin |
2020 |
2020-06-15 |
PMC |
N |
PMC7124590 |
32151723.0 |
10.1016/j.ijbiomac.2020.03.025 |
swrfpnut |
0.376080 |
Yang_2010 |
Someya_2008, Rozanov_1995, Kanitz_2019 |
| 24 |
Zhao_2014 |
Structural Insights into 5' Flap DNA Unwinding and Incision by the Human FAN1 Dimer |
Zhao, Qi; Xue, Xiaoyu; Longerich, Simonne; Sung, Patrick; Xiong, Yong |
2014 |
2014-12-11 |
None |
N |
PMC4268874 |
25500724.0 |
10.1038/ncomms6726 |
tznegx87 |
0.359338 |
|
Rao_T_2018, Deng_2019 |
| 25 |
Ragno_2011 |
Identification of Small‐Molecule Inhibitors of the XendoU Endoribonucleases Family |
Ragno, Rino; Gioia, Ubaldo; Laneve, Pietro; Bozzoni, Irene; Mai, Antonello; Caffarelli, Elisa |
2011 |
2011-07-29 |
PMC |
N |
PMC7162399 |
21805647.0 |
10.1002/cmdc.201100281 |
988ykg1m |
0.359238 |
|
|
| 26 |
Edelmann_2008 |
Ubiquitin and ubiquitin-like specific proteases targeted by infectious pathogens: Emerging patterns and molecular principles |
Edelmann, Mariola J.; Kessler, Benedikt M. |
2008 |
2008-12-31 |
PMC |
N |
PMC7126189 |
18817868.0 |
10.1016/j.bbadis.2008.08.010 |
3zwe6u8w |
0.339755 |
|
Mielech_2014 |
| 27 |
García-Saura_2019 |
An uncharacterized FMAG_01619 protein from Fusobacterium mortiferum ATCC 9817 demonstrates that some bacterial macrodomains can also act as poly-ADP-ribosylhydrolases |
García-Saura, Antonio Ginés; Zapata-Pérez, Rubén; Hidalgo, José Francisco; Cabanes, Juana; Gil-Ortiz, Fernando; Sánchez-Ferrer, Álvaro |
2019 |
2019-03-01 |
COMM-USE |
N |
PMC6397177 |
30824723.0 |
10.1038/s41598-019-39691-4 |
9eudz3kz |
0.339578 |
|
|
| 28 |
Kliger_2008 |
Predicting proteolytic sites in extracellular proteins: only halfway there |
Kliger, Yossef; Gofer, Eyal; Wool, Assaf; Toporik, Amir; Apatoff, Avihay; Olshansky, Moshe |
2008 |
2008-04-15 |
NONCOMM |
N |
PMC7109841 |
18321887.0 |
10.1093/bioinformatics/btn084 |
ol2du7ph |
0.330151 |
|
Böttcher-Friebertshäuser_2018 |