Topic 07 -- Abstracts with Biological Entities (English) - 75 Topics / Sub-Topic Model 55 - 15 Topics

cite ad title authors publish year publish time dataset abstract mentions covid pmcid pubmed id doi cord uid topic weight Similarity scispacy Similarity specter
1 Ng_L_1998 Identification of a 24-kDa Polypeptide Processed from the Coronavirus Infectious Bronchitis Virus 1a Polyprotein by the 3C-like Proteinase and Determination of Its Cleavage Sites Ng, Lisa F.P.; Liu, D.X. 1998 1998-04-10 PMC N PMC7131520 9568037.0 10.1006/viro.1998.9058 9727rypj 0.970983
2 Liu_D_1998 Proteolytic Mapping of the Coronavirus Infectious Bronchitis Virus 1b Polyprotein: Evidence for the Presence of Four Cleavage Sites of the 3C-like Proteinase and Identification of Two Novel Cleavage Products Liu, D.X.; Shen, S.; Xu, H.Y.; Wang, S.F. 1998 1998-07-05 PMC N PMC7131314 9657947.0 10.1006/viro.1998.9199 v3uo38zw 0.959202 Yang_2010 Lim_K_1998
3 Xu_H_2001 Further Identification and Characterization of Novel Intermediate and Mature Cleavage Products Released from the ORF 1b Region of the Avian Coronavirus Infectious Bronchitis Virus 1a/1b Polyprotein Xu, H.Y.; Lim, K.P.; Shen, S.; Liu, D.X. 2001 2001-09-30 PMC N PMC7134593 11601893.0 10.1006/viro.2001.1098 5us4se5o 0.907117 Yang_2010 Denison_1992
4 Piñón_1997 Efficient Autoproteolytic Processing of the MHV-A59 3C-like Proteinase from the Flanking Hydrophobic Domains Requires Membranes Piñón, Josefina D.; Mayreddy, Ravi R.; Turner, Julie D.; Khan, Farah S.; Bonilla, Pedro J.; Weiss, Susan R. 1997 1997-04-14 PMC N PMC7130731 9143287.0 10.1006/viro.1997.8503 bv42mbnp 0.836558 Yang_2010 Someya_2008
5 Shi_X_2013 The Zinc-Finger Domain Was Essential for Porcine Reproductive and Respiratory Syndrome Virus Nonstructural Protein-1α to Inhibit the Production of Interferon-β Shi, Xibao; Zhang, Xiaozhuan; Wang, Fangyu; Wang, Li; Qiao, Songlin; Guo, Junqing; Luo, Chunhui; Wan, Bo; Deng, Ruiguang; Zhang, Gaiping 2013 2013-06-01 PMC N PMC3665301 23428052.0 10.1089/jir.2012.0100 hl171olc 0.804118 Ma_Z_2013
6 Lu_X_1996 Intracellular andin Vitro-Translated 27-kDa Proteins Contain the 3C-like Proteinase Activity of the Coronavirus MHV-A59 Lu, Xiaotao; Lu, Yiqi; Denison, Mark R. 1996 1996-08-15 PMC N PMC7130580 8806521.0 10.1006/viro.1996.0434 j32352te 0.798131 Yang_2010, Chen_2015, Piñón_1997 Piñón_1997, Denison_1992
7 Teng_2002 Further in vitro characterization of mouse hepatitis virus papain-like proteinase 1: Cleavage sequence requirements within PP1a Teng, Henry; Weiss, Susan R. 2002 2002-01-01 PMC N PMC7095356 11935466.0 10.1080/13550280290049598 sm7gsmvf 0.775117
8 Ng_L_2000 Further Characterization of the Coronavirus Infectious Bronchitis Virus 3C-like Proteinase and Determination of a New Cleavage Site Ng, Lisa F.P.; Liu, D.X. 2000 2000-06-20 PMC N PMC7131205 10873746.0 10.1006/viro.2000.0330 s71ail2e 0.774920 Yang_2010, Chen_2015 Piñón_1997, Lim_K_1998
9 Lim_K_1998 Characterization of the Two Overlapping Papain-like Proteinase Domains Encoded in Gene 1 of the Coronavirus Infectious Bronchitis Virus and Determination of the C-Terminal Cleavage Site of an 87-kDa Protein Lim, K.P.; Liu, D.X. 1998 1998-06-05 PMC N PMC7131824 9636369.0 10.1006/viro.1998.9164 8l5gtrmg 0.749681 Yang_2010 Piñón_1997
10 Tibbles_1999 Activity of a purified His-tagged 3C-like proteinase from the coronavirus infectious bronchitis virus Tibbles, K.W; Cavanagh, D; Brown, T.D.K 1999 1999-04-30 PMC N PMC7126649 10392722.0 10.1016/s0168-1702(99)00011-8 d56ci0hl 0.726998 Yang_2010 Piñón_1997, van_der_Linden_2014
11 Ma_Z_2013 Porcine Reproductive and Respiratory Syndrome Virus Nonstructural Protein 4 Induces Apoptosis Dependent on Its 3C-Like Serine Protease Activity Ma, Zhitao; Wang, Yalan; Zhao, Haiyan; Xu, Ao-Tian; Wang, Yongqiang; Tang, Jun; Feng, Wen-hai 2013 2013-07-23 COMM-USE N PMC3720278 23936003.0 10.1371/journal.pone.0069387 8wrwnuuq 0.677731 Wang_2015
12 Lu_Y_1997 Determinants of Mouse Hepatitis Virus 3C-like Proteinase Activity Lu, Yiqi; Denison, Mark R. 1997 1997-04-14 PMC N PMC7131224 9143289.0 10.1006/viro.1997.8479 mfptcw8t 0.662255 Yang_2010 Piñón_1997, Someya_2008
13 Denison_1992 Intracellular processing of the N-terminal ORF 1a proteins of the coronavirus MHV-A59 requires multiple proteolytic events Denison, Mark R.; Zoltick, Philip W.; Hughes, Scott A.; Giangreco, Bernadette; Olson, Ann L.; Perlman, Stanley; Leibowitz, Julian L.; Weiss, Susan R. 1992 1992-07-31 PMC N PMC7130892 1318604.0 10.1016/0042-6822(92)90703-r u2jky7gl 0.640100 Yang_2010, Chen_2015 Piñón_1997
14 Lin_C_2005 Anti-SARS coronavirus 3C-like protease effects of Isatis indigotica root and plant-derived phenolic compounds Lin, Cheng-Wen; Tsai, Fuu-Jen; Tsai, Chang-Hai; Lai, Chien-Chen; Wan, Lei; Ho, Tin-Yun; Hsieh, Chang-Chi; Chao, Pei-Dawn Lee 2005 2005-10-31 PMC N PMC7114321 16115693.0 10.1016/j.antiviral.2005.07.002 x0z68jos 0.632421 Ramajayam_2010 Lin_C_2004
15 Shi_X_2011 Endoribonuclease activities of porcine reproductive and respiratory syndrome virus nsp11 was essential for nsp11 to inhibit IFN-β induction Shi, Xibao; Wang, Li; Li, Xuewu; Zhang, Gaiping; Guo, Junqing; Zhao, Dong; Chai, Shujun; Deng, Ruiguang 2011 2011-07-31 PMC N PMC7112683 21481939.0 10.1016/j.molimm.2011.03.004 vdannfrd 0.587021 Ma_Z_2013
16 Fang_2013 Identification of two ATR-dependent phosphorylation sites on coronavirus nucleocapsid protein with nonessential functions in viral replication and infectivity in cultured cells Fang, Shouguo; Xu, Linghui; Huang, Mei; Qisheng Li, Frank; Liu, D.X. 2013 2013-09-30 PMC N PMC7111981 23849791.0 10.1016/j.virol.2013.06.014 7kwkla73 0.566495 Deng_2019
17 Keep_2018 The ADRP domain from a virulent strain of infectious bronchitis virus is not sufficient to confer a pathogenic phenotype to the attenuated Beaudette strain Keep, Sarah; Bickerton, Erica; Armesto, Maria; Britton, Paul 2018 2018-06-12 COMM-USE N PMC6171709 29893665.0 10.1099/jgv.0.001098 ri0ckfyx 0.561073
18 Wu_A_2015 Prediction and biochemical analysis of putative cleavage sites of the 3C-like protease of Middle East respiratory syndrome coronavirus Wu, Andong; Wang, Yi; Zeng, Cong; Huang, Xingyu; Xu, Shan; Su, Ceyang; Wang, Min; Chen, Yu; Guo, Deyin 2015 2015-10-02 PMC N PMC7114542 26036787.0 10.1016/j.virusres.2015.05.018 0bx704ao 0.517767
19 Kanjanahaluethai_2007 Membrane topology of murine coronavirus replicase nonstructural protein 3 Kanjanahaluethai, Amornrat; Chen, Zhongbin; Jukneliene, Dalia; Baker, Susan C. 2007 2007-05-10 PMC N PMC1925034 17222884.0 10.1016/j.virol.2006.12.009 us3dybue 0.486667
20 van_Aken_2006 Expression, purification, and in vitro activity of an arterivirus main proteinase van Aken, Danny; Benckhuijsen, Willemien E.; Drijfhout, Jan W.; Wassenaar, Alfred L.M.; Gorbalenya, Alexander E.; Snijder, Eric J. 2006 2006-09-30 PMC N PMC7114227 16527369.0 10.1016/j.virusres.2006.01.025 y1cm58r6 0.473023 Yang_2010, Tibbles_1999 Piñón_1997
21 Tian_2009 Structure and Cleavage Specificity of the Chymotrypsin-Like Serine Protease (3CLSP/nsp4) of Porcine Reproductive and Respiratory Syndrome Virus (PRRSV) Tian, Xinsheng; Lu, Guangwen; Gao, Feng; Peng, Hao; Feng, Youjun; Ma, Guangpeng; Bartlam, Mark; Tian, Kegong; Yan, Jinghua; Hilgenfeld, Rolf; Gao, George F. 2009 2009-10-02 PMC N PMC7094510 19646449.0 10.1016/j.jmb.2009.07.062 w8ukokl7 0.472362 Piñón_1997
22 Rozanov_1995 Papain-like proteinase of turnip yellow mosaic virus: a prototype of a new viral proteinase group Rozanov, M. N.; Drugeon, G.; Haenni, A. -L. 1995 1995-01-01 PMC N PMC7086826 7710355.0 10.1007/bf01309862 r7ofnxf1 0.471236 Yang_2010
23 Piñón_1999 Further Requirements for Cleavage by the Murine Coronavirus 3C-like Proteinase: Identification of a Cleavage Site within ORF1b Piñón, Josefina D.; Teng, Henry; Weiss, Susan R. 1999 1999-10-25 PMC N PMC7131300 10544119.0 10.1006/viro.1999.9954 xpj6c0vx 0.466065 Yang_2010 Piñón_1997, Teng_2002
24 Srivastava_2008 Proteolytic processing of a precursor protein for a growth-promoting peptide by a subtilisin serine protease in Arabidopsis Srivastava, Renu; Liu, Jian-Xiang; Howell, Stephen H 2008 2008-08-01 COMM-USE N PMC2667306 18643977.0 10.1111/j.1365-313x.2008.03598.x vg57cnqw 0.441427 Chen_2015, Yang_2010 Denison_1992
25 Wang_2015 The nonstructural protein 11 of porcine reproductive and respiratory syndrome virus inhibits NF-κB signaling by means of its deubiquitinating activity Wang, Dang; Fan, Jinxiu; Fang, Liurong; Luo, Rui; Ouyang, Haiping; Ouyang, Chao; Zhang, Huan; Chen, Huanchun; Li, Kui; Xiao, Shaobo 2015 2015-12-31 PMC N PMC7112538 26342881.0 10.1016/j.molimm.2015.08.011 s0ypy2hf 0.408177 Ma_Z_2013
26 Piotrowski_2008 Crystal structures of the X-domains of a Group-1 and a Group-3 coronavirus reveal that ADP-ribose-binding may not be a conserved property Piotrowski, Yvonne; Hansen, Guido; Boomaars-van der Zanden, A Linda; Snijder, Eric J; Gorbalenya, Alexander E; Hilgenfeld, Rolf 2008 2008-01-01 PMC N PMC2708038 19177346.0 10.1002/pro.15 zt9fg3qs 0.406286 Yang_2009, Brandmann_2015
27 Ye_S_2012 Identification and characterization of Iflavirus 3C-like protease processing activities Ye, Shan; Xia, Hongjie; Dong, Chen; Cheng, Zhenyun; Xia, Xiaoling; Zhang, Jiamin; Zhou, Xi; Hu, Yuanyang 2012 2012-07-05 PMC N PMC7111971 22534091.0 10.1016/j.virol.2012.04.002 g2yta1ra 0.400031 Yang_2010 van_der_Linden_2014, Sun_D_2019
28 Fang_2010 The PRRSV replicase: Exploring the multifunctionality of an intriguing set of nonstructural proteins Fang, Ying; Snijder, Eric J. 2010 2010-12-31 PMC N PMC7114499 20696193.0 10.1016/j.virusres.2010.07.030 qm0jwl2x 0.400018
29 ZHANG_2018 Identification of the strain-specifically truncated nonstructural protein 10 of porcine reproductive and respiratory syndrome virus in infected cells ZHANG, Zhi-bang; XU, Lei; WEN, Xue-xia; DONG, Jian-guo; ZHOU, Lei; GE, Xin-na; YANG, Han-chun; GUO, Xin 2018 2018-05-31 PMC N PMC7128467 10.1016/s2095-3119(17)61896-3 ytkn0nhg 0.394417
30 Shi_Y_2016 A Dimerization-Dependent Mechanism Drives the Endoribonuclease Function of Porcine Reproductive and Respiratory Syndrome Virus nsp11 Shi, Yuejun; Li, Youwen; Lei, Yingying; Ye, Gang; Shen, Zhou; Sun, Limeng; Luo, Rui; Wang, Dang; Fu, Zhen F.; Xiao, Shaobo; Peng, Guiqing 2016 2016-04-14 COMM-USE N PMC4836315 26912626.0 10.1128/jvi.03065-15 2bw2sly8 0.362824
31 Zhang_2004 Old drugs as lead compounds for a new disease? Binding analysis of SARS coronavirus main proteinase with HIV, psychotic and parasite drugs Zhang, Xue Wu; Yap, Yee Leng 2004 2004-05-15 PMC N PMC7126105 15110833.0 10.1016/j.bmc.2004.03.035 d4loia11 0.333536 Kao_R_2004, Zhang_2004
32 Wei_Z_2020 Aspartic acid at residue 185 modulates the capacity of HP-PRRSV nsp4 to antagonize IFN-I expression Wei, Ze-yu; Liu, Fang; Li, Yu; Wang, Hong-lei; Zhang, Zi-ding; Chen, Zhong-zhou; Feng, Wen-hai 2020 2020-04-21 PMC N 10.1016/j.virol.2020.04.007 dc09yj4t 0.329668 Yang_2010
33 Ulferts_2010 Characterization of Bafinivirus Main Protease Autoprocessing Activities Ulferts, Rachel; Mettenleiter, Thomas C.; Ziebuhr, John 2010 2010-11-10 None N PMC3020504 21068254.0 10.1128/jvi.01716-10 5vil4pp3 0.319349 Someya_2008, Piñón_1997
34 Zhang_2004 Exploring the binding mechanism of the main proteinase in SARS-associated coronavirus and its implication to anti-SARS drug design Zhang, Xue Wu; Yap, Yee Leng 2004 2004-05-01 PMC N PMC7125554 15080921.0 10.1016/j.bmc.2004.02.015 occ03hp0 0.311965 Zhu_L_2011
35 Fang_2008 Proteolytic processing of polyproteins 1a and 1ab between non-structural proteins 10 and 11/12 of Coronavirus infectious bronchitis virus is dispensable for viral replication in cultured cells Fang, Shou Guo; Shen, Hongyuan; Wang, Jibin; Tay, Felicia P.L.; Liu, Ding Xiang 2008 2008-09-30 PMC N PMC7103401 18678384.0 10.1016/j.virol.2008.06.038 lawrigpl 0.308920 Graham_2006
36 Chisholm_2001 Expression and partial purification of recombinant tomato ringspot nepovirus 3C-like proteinase: comparison of the activity of the mature proteinase and the VPg-proteinase precursor Chisholm, Joan; Wieczorek, Andrew; Sanfaçon, Hélène 2001 2001-11-05 PMC N 11551656.0 10.1016/s0168-1702(01)00344-6 3jelm70c 0.302878 Yang_2010