Topic 10 -- Abstracts with Biological Entities (English) - 75 Topics / Sub-Topic Model 55 - 15 Topics

cite ad title authors publish year publish time dataset abstract mentions covid pmcid pubmed id doi cord uid topic weight Similarity scispacy Similarity specter
1 Guo_X_2008 Cleavage mechanism of the H5N1 hemagglutinin by trypsin and furin Guo, X.-L.; Li, L.; Wei, D.-Q.; Zhu, Y.-S.; Chou, K.-C. 2008 2008-01-31 PMC N PMC7088033 18235997.0 10.1007/s00726-007-0611-3 o3co0l8u 0.781909 Yang_2010 van_der_Linden_2014, Someya_2008
2 Lan_D_2011 An improved nonchromatographic method for the purification of recombinant proteins using elastin-like polypeptide-tagged proteases Lan, Dongming; Huang, Guangrui; Shao, Hongwei; Zhang, Lichun; Ma, Lixin; Chen, Shangwu; Xu, Anlong 2011 2011-08-15 PMC N PMC7094418 21600185.0 10.1016/j.ab.2011.04.034 frauasts 0.695826 Piñón_1997
3 Chuck_2010 Profiling of Substrate Specificity of SARS-CoV 3CL(pro) Chuck, Chi-Pang; Chong, Lin-Tat; Chen, Chao; Chow, Hak-Fun; Wan, David Chi-Cheong; Wong, Kam-Bo 2010 2010-10-06 COMM-USE N PMC2950840 20949131.0 10.1371/journal.pone.0013197 eh8k8y4c 0.660310 Kuo_C_2009
4 Chuck_2011 Profiling of Substrate Specificities of 3C-Like Proteases from Group 1, 2a, 2b, and 3 Coronaviruses Chuck, Chi-Pang; Chow, Hak-Fun; Wan, David Chi-Cheong; Wong, Kam-Bo 2011 2011-11-02 COMM-USE N PMC3206940 22073294.0 10.1371/journal.pone.0027228 0vu7bobr 0.619161 Yang_2010 Lee_C_2009, Kuo_C_2009
5 Song_2018 iProt-Sub: a comprehensive package for accurately mapping and predicting protease-specific substrates and cleavage sites Song, Jiangning; Wang, Yanan; Li, Fuyi; Akutsu, Tatsuya; Rawlings, Neil D; Webb, Geoffrey I; Chou, Kuo-Chen 2018 2018-04-19 COMM-USE N PMC6556904 29897410.0 10.1093/bib/bby028 78vjzrpx 0.595735 Someya_2008
6 Sandholt_2019 Biochemical characterization of a native group III trypsin ZT from Atlantic cod (Gadus morhua) Sandholt, Gunnar B.; Stefansson, Bjarki; Scheving, Reynir; Gudmundsdottir, Ágústa 2019 2019-03-15 PMC N PMC7112495 30550824.0 10.1016/j.ijbiomac.2018.12.099 lu0l4njv 0.594392 Yang_2010 Rozanov_1995
7 Chen_2006 The rubella virus nonstructural protease recognizes itself via an internal sequence present upstream of the cleavage site for trans-activity Chen, H. H.; Stark, C. J.; Atreya, C. D. 2006 2006-03-27 PMC N PMC7086818 16570206.0 10.1007/s00705-006-0744-9 vnz15x84 0.551520 Yang_2010
8 Watson_2011 Robust substrate profiling method reveals striking differences in specificities of serum and lung fluid proteases Watson, Douglas S.; Jambunathan, Kalyani; Askew, David S.; Kodukula, Krishna; Galande, Amit K. 2011 2011-08-01 PMC N PMC3159512 21806553.0 10.2144/000113717 8wvd1qvf 0.550840 Antalis_2010 van_der_Linden_2014, Kuo_C_2004
9 Shan_2005 Study on Substrate Specificity at Subsites for Severe Acute Respiratory Syndrome Coronavirus 3CL Protease Shan, Yu-Fei; Xu, Gen-Jun 2005 2005-12-23 PMC N PMC7109883 16331324.0 10.1111/j.1745-7270.2005.00114.x 32z5llgd 0.549824 van_der_Linden_2014, Someya_2008
10 Tao_H_2006 Template‐assisted rational design of peptide inhibitors of furin using the lysine fragment of the mung bean trypsin inhibitor Tao, Hu; Zhang, Zhen; Shi, Jiahao; Shao, Xiao‐xia; Cui, Dafu; Chi, Cheng‐wu 2006 2006-07-28 PMC N PMC7164071 16934032.0 10.1111/j.1742-4658.2006.05393.x k8nh8pd5 0.526801 Yang_2010
11 Chu_L_2006 Rapid peptide-based screening on the substrate specificity of severe acute respiratory syndrome (SARS) coronavirus 3C-like protease by matrix-assisted laser desorption/ionization time-of-flight mass spectrometry Chu, Ling-Hon Matthew; Choy, Wai-Yan; Tsai, Sau-Na; Rao, Zihe; Ngai, Sai-Ming 2006 2006-03-07 PMC N PMC2242481 16600962.0 10.1110/ps.052007306 arivkkj0 0.524509 Yang_2010 Lin_C_2004, Kuang_2005, Shan_2004
12 Zheng_2008 Specific and efficient cleavage of fusion proteins by recombinant plum pox virus NIa protease Zheng, Nuoyan; Pérez, José de Jesús; Zhang, Zhonghui; Domínguez, Elvira; Garcia, Juan Antonio; Xie, Qi 2008 2008-02-29 PMC N PMC7130002 18024078.0 10.1016/j.pep.2007.10.008 8kj0c09x 0.519140 Yang_2010 van_der_Linden_2014
13 Du_Q_2004 Polyprotein cleavage mechanism of SARS CoV Mpro and chemical modification of the octapeptide Du, Qi-Shi; Wang, Shu-Qing; Zhu, Yu; Wei, Dong-Qing; Guo, Hong; Sirois, Suzanne; Chou, Kuo-Chen 2004 2004-11-30 PMC N PMC7115412 15501516.0 10.1016/j.peptides.2004.06.018 4jrro0gd 0.514431 Wei_P_2006, Cheng_2010, Kuo_C_2009
14 Muramatsu_2013 Autoprocessing mechanism of severe acute respiratory syndrome coronavirus 3C‐like protease (SARS‐CoV 3CL (pro)) from its polyproteins Muramatsu, Tomonari; Kim, Yong‐Tae; Nishii, Wataru; Terada, Takaho; Shirouzu, Mikako; Yokoyama, Shigeyuki 2013 2013-03-27 PMC N PMC7164132 23452147.0 10.1111/febs.12222 qd61qvch 0.503559 Vaughan_2012, Yang_2010
15 Kuo_C_2009 Engineering a novel endopeptidase based on SARS 3CL(pro) Kuo, Chih-Jung; Shih, Yan-Ping; Kan, Daphne; Liang, Po-Huang 2009 2009-04-25 COMM-USE N PMC7081961 20041855.0 10.2144/000113303 675lfem3 0.481038 Yang_2010 Piñón_1997, van_der_Linden_2014
16 Woo_P_2013 In Silico Analysis of ORF1ab in Coronavirus HKU1 Genome Reveals a Unique Putative Cleavage Site of Coronavirus HKU1 3C‐Like Protease Woo, Patrick C.Y.; Huang, Yi; Lau, Susanna K.P.; Tsoi, Hoi‐wah; Yuen, Kwok‐yung 2013 2013-11-14 PMC Y PMC7168382 16237267.0 10.1111/j.1348-0421.2005.tb03681.x 09ots6oj 0.475459
17 Piñón_1999 Further Requirements for Cleavage by the Murine Coronavirus 3C-like Proteinase: Identification of a Cleavage Site within ORF1b Piñón, Josefina D.; Teng, Henry; Weiss, Susan R. 1999 1999-10-25 PMC N PMC7131300 10544119.0 10.1006/viro.1999.9954 xpj6c0vx 0.474498 Yang_2010 Piñón_1997, Teng_2002
18 Du_Q_2005 Molecular modeling and chemical modification for finding peptide inhibitor against severe acute respiratory syndrome coronavirus main proteinase Du, Qishi; Wang, Shuqing; Wei, Dongqing; Sirois, Suzanne; Chou, Kuo-Chen 2005 2005-02-15 PMC N PMC7094278 15691506.0 10.1016/j.ab.2004.10.003 vtmwv8zl 0.466103 Yang_2010 Du_Q_2004, Wei_P_2006, Taranto_2008, Zhu_L_2011
19 Carrington_1992 Characterization of the potyviral HC-pro autoproteolytic cleavage site Carrington, James C.; Herndon, Kerri L. 1992 1992-03-31 PMC N 1736533.0 10.1016/0042-6822(92)90319-k vv5j1awz 0.466103 Yang_2010
20 Wei_C_2013 Substrate specificity of Tulane virus protease Wei, Chao; Meller, Jarek; Jiang, Xi 2013 2013-02-05 PMC N PMC3545077 23141588.0 10.1016/j.virol.2012.10.010 degxirlx 0.459924 Yang_2010 van_der_Linden_2014
21 Purbey_2006 pC6-2/caspase-6 system to purify glutathione-S-transferase-free recombinant fusion proteins expressed in Escherichia coli Purbey, Prabhat Kumar; Jayakumar, P Cyril; Patole, Milind S; Galande, Sanjeev 2006 2006-11-16 PMC N PMC7086577 17487164.0 10.1038/nprot.2006.310 l31wdsoy 0.456443 van_der_Linden_2014
22 Chisholm_2001 Expression and partial purification of recombinant tomato ringspot nepovirus 3C-like proteinase: comparison of the activity of the mature proteinase and the VPg-proteinase precursor Chisholm, Joan; Wieczorek, Andrew; Sanfaçon, Hélène 2001 2001-11-05 PMC N 11551656.0 10.1016/s0168-1702(01)00344-6 3jelm70c 0.449482 Yang_2010
23 Pasquato_2007 Heparin enhances the furin cleavage of HIV-1 gp160 peptides Pasquato, A.; Dettin, M.; Basak, A.; Gambaretto, R.; Tonin, L.; Seidah, N.G.; Di Bello, C. 2007 2007-12-22 PMC N PMC7125586 18037384.0 10.1016/j.febslet.2007.11.050 r7jt95ko 0.430702 Cheng_2010, van_der_Linden_2014
24 Vey_M_1992 Hemagglutinin activation of pathogenic avian influenza viruses of serotype H7 requires the protease recognition motif R-X-K/R-R Vey, Martin; Orlich, Michaela; Adler, Sabine; Klenk, Hans-Dieter; Rott, Rudolf; Garten, Wolfgang 1992 1992-05-31 PMC N 1566583.0 10.1016/0042-6822(92)90775-k g9qmmugg 0.367400 Yang_2010
25 Seidah_2006 Unexpected similarity between the cytosolic West Nile virus NS3 and the secretory furin-like serine proteinases Seidah, Nabil G. 2006 2006-01-15 PMC N PMC1360712 16371006.0 10.1042/bj20051787 i584s7y0 0.367122 Rozanov_1995, Mielech_2014
26 Kuo_C_2015 Characterization and Inhibition of the Main Protease of Severe Acute Respiratory Syndrome Coronavirus Kuo, Chih‐Jung; Liang, Po‐Huang 2015 2015-02-25 PMC N PMC7159133 10.1002/cben.201400031 lgrk3w7w 0.358263 Yang_2010
27 Subramanian_2009 Hemoglobin Cleavage Site-Specificity of the Plasmodium falciparum Cysteine Proteases Falcipain-2 and Falcipain-3 Subramanian, Shoba; Hardt, Markus; Choe, Youngchool; Niles, Richard K.; Johansen, Eric B.; Legac, Jennifer; Gut, Jiri; Kerr, Iain D.; Craik, Charles S.; Rosenthal, Philip J. 2009 2009-04-09 COMM-USE N PMC2663817 19357776.0 10.1371/journal.pone.0005156 zvs5qe8x 0.357170 Yang_2010, Saura_1999 Grazioso_2012
28 Rawlings_2009 A large and accurate collection of peptidase cleavages in the MEROPS database Rawlings, Neil D. 2009 2009-11-02 NONCOMM N PMC2790309 20157488.0 10.1093/database/bap015 0rq0wdpq 0.348131 Yin_J_2007
29 Drag_2008 Positional-scanning fluorogenic substrate libraries reveal unexpected specificity determinants of deubiquitinating enzymes (DUBs) Drag, Marcin; Mikolajczyk, Jowita; Bekes, Miklos; Reyes-Turcu, Francisca E.; Ellman, Jonathan A.; Wilkinson, Keith D.; Salvesen, Guy S. 2008 2008-10-15 PMC N PMC2766241 18601651.0 10.1042/bj20080779 hgnri5ch 0.335866 Sato_2019, Yan_J_2007 Flierman_2016, Sato_2019, Deng_2019
30 Eid_E_2020 Total Chemical Synthesis of ISGylated-Ubiquitin Hybrid Chain Assisted by Acetamidomethyl Derivatives with Dual Functions Eid, Emad; Boross, Gábor N.; Sun, Hao; Msallam, Muna; Singh, Sumeet K.; Brik, Ashraf 2020 2020-02-18 PMC N PMC7086396 32069038.0 10.1021/acs.bioconjchem.0c00026 ukvr6d4n 0.304762 Deng_2019, Buller_2012